RPSBLAST alignment for GI: 254780533 and conserved domain: cd00832
>gnl|CDD|29419 cd00832, CLF, Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.. Length = 399
Score = 210 bits (535), Expect = 7e-55
Identities = 133/417 (31%), Positives = 202/417 (48%), Gaps = 22/417 (5%)
Query: 2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDG 61
RR VVTG+G++ P G GV+ W ++ G G+ + +FD G +++AG +P
Sbjct: 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPI-TRFDPSGYPARLAGEVP------- 52
Query: 62 TFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNR 121
F+ + + L + D+ + A+D ALAD+G P GVV S GG
Sbjct: 53 DFDAAEHLPGRLLPQTDRMTRLALAAADWALADAGVDPAAL-PPYDMGVVTASAAGGFEF 111
Query: 122 IVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDA 181
L GPR +S + ++ +G ISIR+ +RGP+ V + G A+ A
Sbjct: 112 GQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRGPSGVVVAEQAGGLDALAQA 171
Query: 182 SRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMG 241
RL+ G ++V+GG ++ +C G + + LST +DDP RA PFD G+V G
Sbjct: 172 RRLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLST--SDDPARAYLPFDAAAAGYVPG 228
Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGA--YRCMSSAIARA 299
EG LVLED A+ RGA++Y EI GY + D PP G R + A+A A
Sbjct: 229 EGGAILVLEDAAAARERGARVYGEIAGYAATFDP-----PPGSGRPPGLARAIRLALADA 283
Query: 300 KLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEA 358
L P D+D + A D E A+ + G V +++ K+ G L ++
Sbjct: 284 GLTPEDVDVVFADAAGVPELDRAEAAALAAVFGP--RGVPVTAPKTMTGRLYAGGAPLDV 341
Query: 359 AICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLV 415
A LA+RDG++P T+N+ + +DLV R + A+ + G GG N +LV
Sbjct: 342 ATALLALRDGVIPPTVNVTDVPPAYGLDLVTGRPRPAALRTALVLARGRGGFNSALV 398