RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780533|ref|YP_003064946.1| 3-oxoacyl-(acyl carrier
protein) synthase II [Candidatus Liberibacter asiaticus str. psy62]
         (423 letters)



>gnl|CDD|29421 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP)
           synthase (KAS), type I and II. KASs are responsible for
           the elongation steps in fatty acid biosynthesis. KASIII
           catalyses the initial condensation and KAS I and II
           catalyze further elongation steps by Claisen
           condensation of malonyl-acyl carrier protein (ACP) with
           acyl-ACP..
          Length = 406

 Score =  500 bits (1289), Expect = e-142
 Identities = 233/416 (56%), Positives = 297/416 (71%), Gaps = 11/416 (2%)

Query: 2   RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDG 61
           RRVV+TGLG +TPLG GV+  W  L+AG  GIR +  +FD  G  S+IAG +P       
Sbjct: 1   RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPI-TRFDASGFPSRIAGEVPD------ 53

Query: 62  TFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNR 121
            F+ ED++   +LR++D+F  + + A++ ALAD+G  P  + D    GVV GSG+GGL  
Sbjct: 54  -FDPEDYLDRKELRRMDRFAQFALAAAEEALADAGLDP-EELDPERIGVVIGSGIGGLAT 111

Query: 122 IVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDA 181
           I E+   L + GPR++SPF VP ++ ++ +G ++IR  LRGPN+ V+TAC+SGAHAIGDA
Sbjct: 112 IEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTVSTACASGAHAIGDA 171

Query: 182 SRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMG 241
           +RLI  G ADV++AGGAEA I  L +A FAA RALSTR NDDP +ASRPFD+DRDGFV+G
Sbjct: 172 ARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTR-NDDPEKASRPFDKDRDGFVLG 230

Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKL 301
           EGAG LVLE LEHAKARGAKIY+EI+GYG S DA+HIT P  DG GA R M +A+A A L
Sbjct: 231 EGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAGL 290

Query: 302 LPSDIDYINAHGTSTIA-DTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAAI 360
            P DIDYINAHGTST   D  E  A++R+ G+    V +SSTKS  GHLLGAAGAVEA  
Sbjct: 291 SPEDIDYINAHGTSTPLNDAAESKAIKRVFGEHAKKVPVSSTKSMTGHLLGAAGAVEAIA 350

Query: 361 CNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLVF 416
             LA+RDG++P T+NL+ P  +  +D VP+ A +  +  A+SNSFGFGG N SLVF
Sbjct: 351 TLLALRDGVLPPTINLEEPDPECDLDYVPNEAREAPIRYALSNSFGFGGHNASLVF 406


>gnl|CDD|36608 KOG1394, KOG1394, KOG1394, 3-oxoacyl-(acyl-carrier-protein)
           synthase (I and II) [Lipid transport and metabolism,
           Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 440

 Score =  467 bits (1203), Expect = e-132
 Identities = 219/426 (51%), Positives = 288/426 (67%), Gaps = 16/426 (3%)

Query: 1   MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60
           MRRVV+TG+G +TPLG GV  SW  L++GE GI  L+   D + +   +AG IP      
Sbjct: 23  MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLE-GPDYKSIPFTVAGKIP------ 75

Query: 61  GTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPK--TDKDRNSTGVVFGSGMGG 118
             F+ ED++   D R++ +F    + A++ AL D+G      +++D+  TGV+ G+GMG 
Sbjct: 76  -RFSVEDYVSKGDERRMSKFTKLALTAAEEALKDAGLLDVNLSEEDKEKTGVLIGTGMGD 134

Query: 119 LNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAI 178
           L  I E++  L + G R++SPF VP  + ++ +G +S++  LRGPNH+V+TAC++G H I
Sbjct: 135 LEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSMKYGLRGPNHSVSTACATGNHCI 194

Query: 179 GDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGF 238
           GDA   I  GDADVM+AGG+EA I  L +A F+  RALSTR ND+P +ASRPFD+ RDGF
Sbjct: 195 GDAFNFIRLGDADVMLAGGSEACINPLSLAGFSRARALSTR-NDNPQKASRPFDKKRDGF 253

Query: 239 VMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIAR 298
           VMGEGAG LVLE+LEHAK RGA IY+E++GYGLS DA+HIT P  DG GA   M  A+  
Sbjct: 254 VMGEGAGVLVLEELEHAKKRGAPIYAEVLGYGLSSDAYHITSPDPDGAGAVLAMERALKD 313

Query: 299 AKLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVE 357
           A L P DIDY+NAH TST + D  E  A++R+ G+      +SSTK A+GHLLGAAGAVE
Sbjct: 314 AGLSPEDIDYVNAHATSTPLGDAAEAEAIKRVFGEHNIASKVSSTKGAIGHLLGAAGAVE 373

Query: 358 AAICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKK----NVNVAMSNSFGFGGTNVS 413
           A    LAI DG++P TLNL+NP     +D VP +A +K     V VA+SNSFGFGGTN S
Sbjct: 374 AIFTVLAINDGVLPPTLNLENPDPGVDLDYVPLKASEKKGGNKVRVALSNSFGFGGTNAS 433

Query: 414 LVFRKF 419
           L F KF
Sbjct: 434 LCFAKF 439


>gnl|CDD|30652 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid
           metabolism / Secondary metabolites biosynthesis,
           transport, and catabolism].
          Length = 412

 Score =  455 bits (1173), Expect = e-129
 Identities = 230/423 (54%), Positives = 292/423 (69%), Gaps = 15/423 (3%)

Query: 1   MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60
           MRRVV+TGLG+++ LG GV+  W+ L+AG+ GIR +  +FD  GL  KIAG I       
Sbjct: 2   MRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPIT-RFDASGLGVKIAGEIK------ 54

Query: 61  GTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLN 120
              + +D I   + R +D+F    +VA+  AL D+G   + + D    GV  GSG+GGL 
Sbjct: 55  ---DLDDQIAKKERRFMDRFSQLAVVAAVEALEDAGLDNELNVD-MRVGVAIGSGIGGLE 110

Query: 121 RIVESSNVLRDGGPRK-ISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIG 179
            I    + L   G RK ISPF VP  + +L +GN++I   L+GPN+   TAC++GAHAIG
Sbjct: 111 DIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPVTACATGAHAIG 170

Query: 180 DASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFV 239
           DA RLI  G ADV++AGGAEA I  LG+A F A RALSTR NDDP +ASRPFD++RDGFV
Sbjct: 171 DAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTR-NDDPEKASRPFDKNRDGFV 229

Query: 240 MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARA 299
           +GEGAGALVLE+LEHA ARGAKIY+EI+GYG + DA+HIT P  DG GA R M +A+A A
Sbjct: 230 IGEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADA 289

Query: 300 KLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEA 358
            L P DIDYINAHGTST   D  E  A++R+ G+    + +SSTKS  GH LGAAGAVEA
Sbjct: 290 GLTPEDIDYINAHGTSTPANDKAESLAIKRVFGEHAKSLPVSSTKSLTGHTLGAAGAVEA 349

Query: 359 AICNLAIRDGIVPATLNLDNPAKKTF-IDLVPHRAIKKNVNVAMSNSFGFGGTNVSLVFR 417
            I  LA+RDGI+P T+NLDNP  +   +D+VP+ A    V  A+SNSFGFGGTN SLVF+
Sbjct: 350 IISLLALRDGIIPPTINLDNPDPEAADLDVVPNEARTGAVRAALSNSFGFGGTNASLVFK 409

Query: 418 KFQ 420
           ++Q
Sbjct: 410 RYQ 412


>gnl|CDD|29415 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a
           subclass of decarboxylating condensing enzymes,
           including beta-ketoacyl [ACP] synthase, type I and II
           and polyketide synthases.They are characterized by the
           utlization of acyl carrier protein (ACP) thioesters as
           primer substrates, as well as the nature of their active
           site residues..
          Length = 407

 Score =  222 bits (567), Expect = 1e-58
 Identities = 144/421 (34%), Positives = 211/421 (50%), Gaps = 22/421 (5%)

Query: 2   RRVVVTGLGMITPLGCG---VDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNG 58
            RVV+TG+G+++P G G   V+  W  L  G  GI  + +          +AG IP    
Sbjct: 1   SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLKS--RFDRGVAGQIP---- 54

Query: 59  SDGTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGG 118
              T +   W        +D+  L  +VA++ ALAD+G     +   +  GVV GSGMGG
Sbjct: 55  ---TGDIPGWDAKR-TGIVDRTTLLALVATEEALADAGITDPYEVHPSEVGVVVGSGMGG 110

Query: 119 LNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQL-RGPNHAVTTACSSGAHA 177
           L  +     +        +SP  +     + ++G ++I      GP      AC++   A
Sbjct: 111 LRFLRRGGKLDARAVNPYVSPKWML--SPNTVAGWVNILLLSSHGPIKTPVGACATALEA 168

Query: 178 IGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDG 237
           +  A   I  G AD++V GG E P+   G++ FA   ALST   ++P   SRPFD+ RDG
Sbjct: 169 LDLAVEAIRSGKADIVVVGGVEDPLE-EGLSGFANMGALSTA-EEEPEEMSRPFDETRDG 226

Query: 238 FVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIA 297
           FV  EGAG LVLE  E A ARGA IY  + G   + D    ++P   G G  R + +A+A
Sbjct: 227 FVEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPA-GGKGIARAIRTALA 285

Query: 298 RAKLLPSDIDYINAHGTSTIA-DTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAV 356
           +A L   D+D I+AHGTST A D  E  A+  + G     + +++ K+  GH  GAAGA+
Sbjct: 286 KAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGAL 345

Query: 357 EAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPH--RAIKKNVNVAMSNSFGFGGTNVSL 414
           +      ++  G++P T NLD+         V    R +   V  A+ N+FGFGG+N +L
Sbjct: 346 QLIGALQSLEHGLIPPTANLDDVDPDVEHLSVVGLSRDLNLKVRAALVNAFGFGGSNAAL 405

Query: 415 V 415
           V
Sbjct: 406 V 406


>gnl|CDD|29419 cd00832, CLF, Chain-length factor (CLF) is a factor required for
           polyketide chain initiation of aromatic
           antibiotic-producing polyketide synthases (PKSs) of
           filamentous bacteria. CLFs have been shown to have
           decarboxylase activity towards malonyl-acyl carrier
           protein (ACP). CLFs are similar to other elongation
           ketosynthase domains, but their active site cysteine is
           replaced by a conserved glutamine..
          Length = 399

 Score =  210 bits (535), Expect = 7e-55
 Identities = 133/417 (31%), Positives = 202/417 (48%), Gaps = 22/417 (5%)

Query: 2   RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDG 61
           RR VVTG+G++ P G GV+  W  ++ G  G+  +  +FD  G  +++AG +P       
Sbjct: 1   RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPI-TRFDPSGYPARLAGEVP------- 52

Query: 62  TFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNR 121
            F+  + +    L + D+     + A+D ALAD+G  P         GVV  S  GG   
Sbjct: 53  DFDAAEHLPGRLLPQTDRMTRLALAAADWALADAGVDPAAL-PPYDMGVVTASAAGGFEF 111

Query: 122 IVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDA 181
                  L   GPR +S +       ++ +G ISIR+ +RGP+  V    + G  A+  A
Sbjct: 112 GQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRGPSGVVVAEQAGGLDALAQA 171

Query: 182 SRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMG 241
            RL+  G   ++V+GG ++ +C  G  +  +   LST  +DDP RA  PFD    G+V G
Sbjct: 172 RRLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLST--SDDPARAYLPFDAAAAGYVPG 228

Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGA--YRCMSSAIARA 299
           EG   LVLED   A+ RGA++Y EI GY  + D      PP  G      R +  A+A A
Sbjct: 229 EGGAILVLEDAAAARERGARVYGEIAGYAATFDP-----PPGSGRPPGLARAIRLALADA 283

Query: 300 KLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEA 358
            L P D+D + A        D  E  A+  + G     V +++ K+  G L      ++ 
Sbjct: 284 GLTPEDVDVVFADAAGVPELDRAEAAALAAVFGP--RGVPVTAPKTMTGRLYAGGAPLDV 341

Query: 359 AICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLV 415
           A   LA+RDG++P T+N+ +      +DLV  R     +  A+  + G GG N +LV
Sbjct: 342 ATALLALRDGVIPPTVNVTDVPPAYGLDLVTGRPRPAALRTALVLARGRGGFNSALV 398


>gnl|CDD|143886 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal
           domain.  The structure of beta-ketoacyl synthase is
           similar to that of the thiolase family (pfam00108) and
           also chalcone synthase. The active site of beta-ketoacyl
           synthase is located between the N and C-terminal
           domains. The N-terminal domain contains most of the
           structures involved in dimer formation and also the
           active site cysteine.
          Length = 243

 Score =  209 bits (534), Expect = 1e-54
 Identities = 90/255 (35%), Positives = 124/255 (48%), Gaps = 12/255 (4%)

Query: 1   MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60
              V +TG+G   P G G +  W  L+AG   IR            S++AG I   +   
Sbjct: 1   AEPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPADLSGLYPPSRVAGEIYGFDFDA 60

Query: 61  GTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLN 120
             F     I   +   +D      + A+  AL D+G  P + +  + TGV  GSG G   
Sbjct: 61  AFFG----ISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSDRTGVFVGSGSGDYA 116

Query: 121 RIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGD 180
              E   +   GGPR+ SP+     + S+ +G IS R  LRGP+  V TACSS   A+  
Sbjct: 117 ---ELQALDSAGGPRRGSPYLTGAWMPSVAAGRISYRLGLRGPSVTVDTACSSSLVALHA 173

Query: 181 ASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVM 240
           A R I  G+ D+ +AGG EAP+   G A F+A  AL +   D P +A  PF    DGFV 
Sbjct: 174 AVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSP--DGPCKAFDPFA---DGFVR 228

Query: 241 GEGAGALVLEDLEHA 255
           GEG GA++L++L  A
Sbjct: 229 GEGVGAVLLKELSEA 243


>gnl|CDD|29420 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
           acids into a large variety of different products, called
           polyketides, by successive decarboxylating Claisen
           condensations. PKSs can be divided into 2 groups,
           modular type I PKSs consisting of one or more large
           multifunctional proteins and iterative type II PKSs,
           complexes of several monofunctional subunits..
          Length = 421

 Score =  195 bits (496), Expect = 3e-50
 Identities = 127/437 (29%), Positives = 188/437 (43%), Gaps = 40/437 (9%)

Query: 3   RVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHL-DQKFDLEGLSSKIAGLIPVGNGSDG 61
            + + G+    P     D  W  L+ G   I  + + ++D +G                G
Sbjct: 2   PIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGG 61

Query: 62  TFNYEDW-------ILSSDLRKID-QFILYGMVASDMALADSGWAPKTDKDRNSTGVVFG 113
             +  D        I   +   +D Q  L   VA + AL D+G++P++      TGV  G
Sbjct: 62  FLDDVDAFDAAFFGISPREAEAMDPQQRLLLEVAWE-ALEDAGYSPESLAGSR-TGVFVG 119

Query: 114 SGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSS 173
           +       ++          P +I  +   G+  + L+  IS    LRGP+  V TACSS
Sbjct: 120 ASSSDYLELLARD-------PDEIDAYAATGTSRAFLANRISYFFDLRGPSLTVDTACSS 172

Query: 174 GAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQ 233
              A+  A + +  G+ D+ + GG    +       F+    LS      P    RPFD 
Sbjct: 173 SLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS------PDGRCRPFDA 226

Query: 234 DRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLS--GDAFHITMPPEDGNGAYRC 291
           D DG+V GEG G +VL+ L  A   G +IY+ I G  ++  G    IT P   G      
Sbjct: 227 DADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAP--SGEAQAAL 284

Query: 292 MSSAIARAKLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVS---MSSTKSAMG 347
           +  A ARA + PSDIDY+ AHGT T + D IE+ A+ ++ G S        + S KS +G
Sbjct: 285 IRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIG 344

Query: 348 HLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFID----LVPHRAI----KKNVNV 399
           HL  AAG        LA+  G++P  L+ + P  K   +     VP  A           
Sbjct: 345 HLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDFEESPLRVPTEARPWPAPAGPRR 404

Query: 400 AMSNSFGFGGTNVSLVF 416
           A  +SFGFGGTN  ++ 
Sbjct: 405 AGVSSFGFGGTNAHVIL 421


>gnl|CDD|73238 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes;
           Family of enzymes that catalyze the formation of a new
           carbon-carbon bond by a decarboxylating Claisen-like
           condensation reaction. Members are involved in the
           synthesis of fatty acids and polyketides, a diverse
           group of natural products. Both pathways are an
           iterative series of additions of small carbon units,
           usually acetate, to a nascent acyl group. There are 2
           classes of decarboxylating condensing enzymes, which can
           be distinguished by sequence similarity, type of active
           site residues and type of primer units (acetyl CoA or
           acyl carrier protein (ACP) linked units)..
          Length = 332

 Score =  169 bits (428), Expect = 1e-42
 Identities = 113/334 (33%), Positives = 167/334 (50%), Gaps = 17/334 (5%)

Query: 83  YGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTV 142
            G  A++ A+AD+G + +  K+    GVV G+G G          V      R + P+ V
Sbjct: 14  LGFEAAERAIADAGLSREYQKNP-IVGVVVGTGGGS-----PRFQVFGADAMRAVGPYVV 67

Query: 143 PGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPI 202
             ++    SG I+    + GP + V+ AC+   HA+  A+  +  G  D+++AGG+E   
Sbjct: 68  TKAMFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEEL- 126

Query: 203 CRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKI 262
                  F A  ALST     P +ASR FD   DGFV G+GAGALV+E+LEHA ARGA I
Sbjct: 127 AAPMDCEFDAMGALST-----PEKASRTFDAAADGFVFGDGAGALVVEELEHALARGAHI 181

Query: 263 YSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTST-IADTI 321
           Y+EI+G   + D   +        G  R    A+A A L   DIDY+ AHGT T I D  
Sbjct: 182 YAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVK 241

Query: 322 ELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAK 381
           EL  +    GD     ++S+TK+  G+L  AA  +      L +  G +P +++++   +
Sbjct: 242 ELKLLRSEFGD--KSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDE 299

Query: 382 KTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLV 415
                 +      + +  A+ N FG GGTN +LV
Sbjct: 300 A--GLNIVTETTPRELRTALLNGFGLGGTNATLV 331


>gnl|CDD|33130 COG3321, COG3321, Polyketide synthase modules and related proteins
           [Secondary metabolites biosynthesis, transport, and
           catabolism].
          Length = 1061

 Score =  145 bits (367), Expect = 2e-35
 Identities = 105/342 (30%), Positives = 161/342 (47%), Gaps = 37/342 (10%)

Query: 91  ALADSGWAPKTDKDRNSTGVVFGSGMGG-LNRIVESSNVLRDGGPRKISPFTVPGSIISL 149
           AL D+G  P +    ++TGV  G+ +   L  ++                + + G+  S+
Sbjct: 102 ALEDAGIYPDSL-RGSATGVFAGASVADYLLLLLAD--------DEAEPEYAITGNSSSV 152

Query: 150 LSGNISIRNQLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVAS 209
            +G IS    L GP+  V TACSS   A+  A + +  G+ D+ +AGG    +       
Sbjct: 153 AAGRISYVLGLSGPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYL 212

Query: 210 FAACRALSTRFNDDPTRASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGY 269
           F+A   LS      P    + FD D DG+V GEGAG +VL+ L  A+  G +IY+ I G 
Sbjct: 213 FSAGGMLS------PDGRCKAFDADADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGS 266

Query: 270 GLSGD--AFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTST-IADTIELGAV 326
            ++ D  +  +T P  +       +  A+A A + P+ + Y+ AHGT T + D IE  A+
Sbjct: 267 AVNQDGRSNGLTAP--NLEAQADVIREALADAGIDPATVQYVEAHGTGTPLGDPIEANAL 324

Query: 327 ERLMGDSCY--HVSMSSTKSAMGHLLGAAGAVEAAICN---LAIRDGIVPATLNLDNPAK 381
             + G+       ++ S KS +GHL  AAG    A      LA++ G +P TL+ D P  
Sbjct: 325 GAVYGEGAPAQPCAIGSVKSNIGHLEAAAG---IAGLIKTALALKHGYIPPTLHFDTPNP 381

Query: 382 KTFID----LVPHRAIKKNVNV----AMSNSFGFGGTNVSLV 415
           +   D    +VP  A           A  +SFGFGGTN  ++
Sbjct: 382 EIDFDSSPFVVPTEATPWPTGGGPRRAGVSSFGFGGTNAHVI 423


>gnl|CDD|145778 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal
           domain.  The structure of beta-ketoacyl synthase is
           similar to that of the thiolase family (pfam00108) and
           also chalcone synthase. The active site of beta-ketoacyl
           synthase is located between the N and C-terminal
           domains.
          Length = 117

 Score =  130 bits (330), Expect = 5e-31
 Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 2/117 (1%)

Query: 263 YSEIIGYGLSGD-AFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTST-IADT 320
           Y+ I G  ++ D A H  +   +G    R + +A+A A L P D+DY+ AHGT T + D 
Sbjct: 1   YAVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDP 60

Query: 321 IELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLD 377
           IE  A++ + G     + + S KS +GHL  AAG        LA+R G++P TLNLD
Sbjct: 61  IEAEALKAVFGPGRRPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVIPPTLNLD 117


>gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and
           related proteins [Lipid transport and metabolism].
          Length = 2376

 Score =  103 bits (258), Expect = 9e-23
 Identities = 104/429 (24%), Positives = 180/429 (41%), Gaps = 36/429 (8%)

Query: 1   MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFD--LEGLSSKIAGLIPVGNG 58
              +V++G+    P    V      L+AG   +    ++++  L GL  +   L  +   
Sbjct: 10  QEDIVISGMSGKLPESDNVKEFGDNLLAGVDMVTDDPRRWEAGLYGLPKRSGKLKDLNKF 69

Query: 59  SDGTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGG 118
             G F     +       +D  +   + A+  A+ D+G  P  D   + TGV  G     
Sbjct: 70  DAGFFG----VHPKQANTMDPQLRLLLEATWEAIVDAGINP-DDLRGSRTGVFVGVSG-- 122

Query: 119 LNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAI 178
                E+S  L    P  ++ +++ G + ++ +  IS     +GP+ +V TACSS   A+
Sbjct: 123 ----SETSGALSQD-PDTVNGYSMTGCVRAMFANRISYTFDFQGPSFSVDTACSSSLMAL 177

Query: 179 GDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGF 238
            +A + I  G  D  +  GA   +       F     LS      P  + + FD+  +G+
Sbjct: 178 QNAFQDIRSGQCDAAIVAGANLILKPTTSLQFLRLGMLS------PDGSCKAFDEAGNGY 231

Query: 239 VMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFH---ITMPPEDGNGAYRCMSSA 295
              EG  A++L+    A+    ++Y+ I+    + D F    +T P   G+   + +   
Sbjct: 232 CRSEGVVAVLLQRKSLAR----RVYATILNARTNTDGFKEQGVTFP--SGDMQEQLIRET 285

Query: 296 IARAKLLPSDIDYINAHGTST-IADTIELGAVER-LMGDSCYHVSMSSTKSAMGHLLGAA 353
            + A L P  + Y+ AHGT T + D  E   + R         + + S KS MGH   A+
Sbjct: 286 YSEAGLNPESVVYVEAHGTGTKVGDPQEANGITRFFCATRTTPLLIGSVKSNMGHAEPAS 345

Query: 354 GAVEAAICNLAIRDGIVPATL--NLDNPAKKTFID---LVPHRAIKKNVNVAMSNSFGFG 408
           G    A   L++ +G++P  L  N  NP     +D    V  R +     +   NSFGFG
Sbjct: 346 GVCALAKILLSMEEGLIPPNLHYNTPNPEIPALVDGRLKVVDRPLPWRGGIVGINSFGFG 405

Query: 409 GTNVSLVFR 417
           G+N  ++ +
Sbjct: 406 GSNAHVILK 414


>gnl|CDD|73194 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that
           catalyze a (decarboxylating or non-decarboxylating)
           Claisen-like condensation reaction. Members are share
           strong structural similarity, and are involved in the
           synthesis and degradation of fatty acids, and the
           production of polyketides, a diverse group of natural
           products..
          Length = 254

 Score =  103 bits (258), Expect = 1e-22
 Identities = 75/256 (29%), Positives = 102/256 (39%), Gaps = 63/256 (24%)

Query: 162 GPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFN 221
           GP ++V  AC++G  A+  A + +  G AD+++AGG+E                      
Sbjct: 59  GPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE--------------------- 97

Query: 222 DDPTRASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGD-AFHITM 280
                           FV G+GA A V+E  EHA  RGA   +EI+    + D A  +  
Sbjct: 98  ----------------FVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMVPA 141

Query: 281 PPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSM 339
               G G  R    A+  A L PSDIDY+ AHGT T I D +EL       G     V  
Sbjct: 142 V--SGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAV-- 197

Query: 340 SSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNV 399
           S+T    GH LGAAG        L +    +P T       +                  
Sbjct: 198 SATLIMTGHPLGAAGLAILDELLLMLEHEFIPPT---PREPRT----------------- 237

Query: 400 AMSNSFGFGGTNVSLV 415
            +   FG GGTN ++V
Sbjct: 238 VLLLGFGLGGTNAAVV 253


>gnl|CDD|143885 pfam00108, Thiolase_N, Thiolase, N-terminal domain.  Thiolase is
           reported to be structurally related to beta-ketoacyl
           synthase (pfam00109), and also chalcone synthase.
          Length = 264

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE----APIC 203
           P   +   C SG  A+  A++ I  GDAD++VAGG E    AP  
Sbjct: 80  PAVTINKVCGSGLKAVALAAQAIRAGDADIVVAGGVESMSNAPYV 124


>gnl|CDD|29411 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze
           the reversible thiolytic cleavage of 3-ketoacyl-CoA into
           acyl-CoA and acetyl-CoA, a 2-step reaction involving a
           covalent intermediate formed with a catalytic cysteine.
           They are found in prokaryotes and eukaryotes (cytosol,
           microbodies and mitochondria). There are 2 functional
           different classes: thiolase-I (3-ketoacyl-CoA thiolase)
           and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I
           can cleave longer fatty acid molecules and plays an
           important role in the beta-oxidative degradation of
           fatty acids. Thiolase-II has a high substrate
           specificity. Although it can cleave acetoacyl-CoA, its
           main function is the synthesis of acetoacyl-CoA from two
           molecules of acetyl-CoA, which gives it importance in
           several biosynthetic pathways..
          Length = 386

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFND 222
           P   V   C SG  A+  A++ IA G+ADV+VAGG E     +  A +   +A       
Sbjct: 76  PATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVE----SMSRAPYLLPKARRGGRLG 131

Query: 223 DPTRASRPFDQDRDGFV---MGEGA 244
             T      D   D F    MG  A
Sbjct: 132 LNTLDGMLDDGLTDPFTGLSMGITA 156



 Score = 39.3 bits (92), Expect = 0.002
 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 243 GAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLL 302
           GA A++L   E AK  G K  + I+GY ++G       P   G G    +  A+ RA L 
Sbjct: 247 GAAAVLLMSEEKAKELGLKPLARIVGYAVAGVD-----PAIMGIGPVPAIPKALKRAGLT 301

Query: 303 PSDIDYINAHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA 355
             DID I  +     A   +  A  + +G     V+++    A+GH LGA+GA
Sbjct: 302 LDDIDLIEINE----AFAAQALACLKELGLDPEKVNVNGGAIALGHPLGASGA 350


>gnl|CDD|30532 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism].
          Length = 392

 Score = 38.4 bits (89), Expect = 0.004
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%)

Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE----APICRLGV 207
           P   V  AC+SG  A+  A++ IA G+ADV++AGG E    AP+ R GV
Sbjct: 84  PAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAPMGREGV 132



 Score = 30.7 bits (69), Expect = 0.86
 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 13/118 (11%)

Query: 243 GAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLL 302
           GA AL+L     AK  G    + I  Y ++G      + P   +G    +  A+  A LL
Sbjct: 249 GAAALLLMSESKAKELGLAPLAAIRAYAMAG------VDPSIMDGPVAAVHDALTIAGLL 302

Query: 303 -PSDIDYINAHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAA 359
              D+              + LG  + L GD    V+ S    A+GH +GA GA    
Sbjct: 303 ALEDLGLAEKGEA---FAAVALGVTKIL-GD--LPVNPSGGAIALGHPIGATGARILV 354


>gnl|CDD|36606 KOG1392, KOG1392, KOG1392, Acetyl-CoA acetyltransferase [Lipid
           transport and metabolism].
          Length = 465

 Score = 37.7 bits (87), Expect = 0.006
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%)

Query: 134 PRKISPFTVPGSIIS-LLSGNISIRNQL------RGPNHAVTTACSSGAHAIGDASRLIA 186
           P++   + + G++I  + + NI+    L      + P H VT AC S   A+     LIA
Sbjct: 84  PKEQLDYIICGTVIQEVKTSNIAREAALLAGFSDKTPAHTVTMACISSNVAMTTGMGLIA 143

Query: 187 FGDADVMVAGGAE 199
            G+ADV+VAGG E
Sbjct: 144 TGNADVIVAGGVE 156


>gnl|CDD|29416 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol
           carrier protein (SCP)-x isoform and related proteins;
           SCP-2  has multiple roles in intracellular lipid
           circulation and metabolism. The N-terminal presequence
           in the SCP-x isoform represents a peroxisomal
           3-ketacyl-Coa thiolase specific for branched-chain acyl
           CoAs, which is proteolytically cleaved from the sterol
           carrier protein..
          Length = 375

 Score = 34.5 bits (79), Expect = 0.057
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 236 DGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDG--NGAYRCMS 293
           D   + +GA A+VL   E A+    +    I+G G + D   ++   +    + A     
Sbjct: 200 DCCPVSDGAAAVVLASEERARELTDR-PVWILGVGAASDTPSLSERDDFLSLDAARLAAR 258

Query: 294 SAIARAKLLPSDIDYINAHGTSTIADTIEL 323
            A   A + P DID    +   TIA+ + L
Sbjct: 259 RAYKMAGITPDDIDVAELYDCFTIAELLAL 288



 Score = 33.7 bits (77), Expect = 0.098
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 160 LRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAP 201
           L  P   V  A +SG+ A+  A+  IA G ADV++  GAE  
Sbjct: 66  LGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKM 107


>gnl|CDD|36604 KOG1390, KOG1390, KOG1390, Acetyl-CoA acetyltransferase [Lipid
           transport and metabolism].
          Length = 396

 Score = 33.7 bits (77), Expect = 0.10
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 15/117 (12%)

Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKL 301
           +GA A+VL   E AK  G K  + I+ +G +      T P +        +  A+ +A L
Sbjct: 255 DGAAAVVLMSGEAAKELGLKPLARIVAWGDAA-----TEPIDFTIAPALAIPKALKKAGL 309

Query: 302 LPSDIDY--IN-AHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA 355
             SD+DY  IN A     +A+  +LG            V++     A+GH LG +GA
Sbjct: 310 EQSDVDYWEINEAFSVVVLANIKKLGLDPSK-------VNVHGGAVALGHPLGMSGA 359



 Score = 33.3 bits (76), Expect = 0.14
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 167 VTTACSSGAHAIGDASRLIAFGDADVMVAGGAEA 200
           V   C+SG  A+  A++ I  G AD++VAGG E+
Sbjct: 88  VNKVCASGMKAVILAAQSIQTGHADIVVAGGMES 121


>gnl|CDD|36605 KOG1391, KOG1391, KOG1391, Acetyl-CoA acetyltransferase [Lipid
           transport and metabolism].
          Length = 396

 Score = 33.1 bits (75), Expect = 0.14
 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 9/116 (7%)

Query: 240 MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARA 299
           + +GAGA+++   +  K    K  + I+ Y + G       P   G G    +S  + ++
Sbjct: 252 IADGAGAVIVASEDAVKKHNLKPLARIVAYSVVG-----CDPSIMGIGPVPAISGVLKKS 306

Query: 300 KLLPSDIDYINAHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA 355
            L   DID +  +     A   +  AVER +      ++++    A+GH LGA+G+
Sbjct: 307 GLKLKDIDLVEVNE----AFAPQYLAVERSLDLDISKLNVNGGAIALGHPLGASGS 358



 Score = 27.7 bits (61), Expect = 6.6
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)

Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE----APIC 203
           P   +   C SG  +I + ++ I  G+A++++ GG E    AP C
Sbjct: 83  PALTINRLCGSGFQSIVNGAQEICVGEAEIVLCGGTENMSQAPFC 127


>gnl|CDD|30680 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein].
          Length = 323

 Score = 32.5 bits (74), Expect = 0.22
 Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 43/165 (26%)

Query: 167 VTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTR 226
           +  ACS   +A+  A  LI  G    ++  GAE                  +R  D   R
Sbjct: 109 LQAACSGFLYALSVADGLIRSGGYKNVLVVGAE----------------TLSRILDWTDR 152

Query: 227 ASRPFDQDRDGFVMGEGAGALVLEDLE--------HAKARGAKIYSEIIGYGLSG----- 273
            +          + G+GAGA+VLE  E           + G++     +  G S      
Sbjct: 153 DTC--------VLFGDGAGAVVLEATEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEE 204

Query: 274 -DAFHITMP-PEDGNGAYRCMSSAI----ARAKLLPSDIDYINAH 312
                + M   E    A R M  AI     +A L P DID+   H
Sbjct: 205 SGGGLLVMDGREVFKFAVRAMPKAIEEVLEKAGLTPEDIDWFVPH 249


>gnl|CDD|29417 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III
           (KASIII) initiates the elongation in type II fatty acid
           synthase systems. It is found in bacteria and plants.
           Elongation of fatty acids in the type II systems occurs
           by Claisen condensation of malonyl-acyl carrier protein
           (ACP) with acyl-ACP. KASIII initiates this process by
           specifically using acetyl-CoA over acyl-CoA..
          Length = 320

 Score = 31.3 bits (71), Expect = 0.56
 Identities = 39/167 (23%), Positives = 59/167 (35%), Gaps = 45/167 (26%)

Query: 167 VTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTR 226
           +  ACS   + +  A+ LI  G A  ++  GAE                  +R  D   R
Sbjct: 107 INAACSGFLYGLSTAAGLIRSGGAKNVLVVGAET----------------LSRILDWTDR 150

Query: 227 ASRPFDQDRDGFVMGEGAGALVLEDLEHAKA-RGAKIYSEIIGYG-LSGDAFHITMPPED 284
           ++          + G+GAGA+VLE  E       + + S+  G   L+  A     P ED
Sbjct: 151 STA--------VLFGDGAGAVVLEATEEDPGILDSVLGSDGSGADLLTIPAGGSRSPFED 202

Query: 285 GNGAYRCM-------------------SSAIARAKLLPSDIDYINAH 312
             G    +                     A+ +A L P DID+   H
Sbjct: 203 AEGGDPYLVMDGREVFKFAVRLMPESIEEALEKAGLTPDDIDWFVPH 249


>gnl|CDD|73239 cd00826, nondecarbox_cond_enzymes, nondecarboxylating condensing
           enzymes; In general, thiolases catalyze the reversible
           thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and
           acetyl-CoA, a 2-step reaction involving a covalent
           intermediate formed with a catalytic cysteine. There are
           2 functional different classes: thiolase-I
           (3-ketoacyl-CoA thiolase) and thiolase-II
           (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer
           fatty acid molecules and plays an important role in the
           beta-oxidative degradation of fatty acids. Thiolase-II
           has a high substrate specificity. Although it can cleave
           acetoacyl-CoA, its main function is the synthesis of
           acetoacyl-CoA from two molecules of acetyl-CoA, which
           gives it importance in several biosynthetic pathways..
          Length = 393

 Score = 31.0 bits (69), Expect = 0.58
 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 15/113 (13%)

Query: 167 VTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTR 226
           +   C SG  A+  A +LIA GDA+ ++AGG E         + A  + +    N    R
Sbjct: 81  MNNLCGSGLRALALAMQLIAGGDANCILAGGFEK--METSAENNAKEKHIDVLINKYGMR 138

Query: 227 ASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHIT 279
           A        D F +   AGA      E A+  G     E   +G+ G    I 
Sbjct: 139 A------CPDAFALAGQAGA------EAAEKDGRFK-DEFAKFGVKGRKGDIH 178


>gnl|CDD|31955 COG1769, COG1769, Uncharacterized protein predicted to be involved
           in DNA repair (RAMP superfamily) [DNA replication,
           recombination, and repair].
          Length = 335

 Score = 30.4 bits (68), Expect = 0.98
 Identities = 10/49 (20%), Positives = 17/49 (34%)

Query: 122 IVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTA 170
           +V   + +  GG  K   F     I +       I+N      + +T A
Sbjct: 193 LVSGLDGVFLGGESKWVAFEHVEEINTTAFDPPKIKNVAYYKVYLITPA 241


>gnl|CDD|36603 KOG1389, KOG1389, KOG1389, 3-oxoacyl CoA thiolase [Lipid transport
           and metabolism].
          Length = 435

 Score = 30.0 bits (67), Expect = 1.3
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 12/89 (13%)

Query: 119 LNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIR-NQLRG------PNHAVTTAC 171
           L  ++E +N+     P  I    V G++++  SG    R            P   V   C
Sbjct: 69  LRAVIEKTNL----DPSLIGDIVV-GTVLAPGSGASECRMAAFYAGFPETVPVRTVNRQC 123

Query: 172 SSGAHAIGDASRLIAFGDADVMVAGGAEA 200
           SSG  A+ D +  I  G  D+ +A G E+
Sbjct: 124 SSGLQAVADIAAKIRAGFYDIGLAAGVES 152



 Score = 27.3 bits (60), Expect = 7.7
 Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 15/119 (12%)

Query: 240 MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPED-GNGAYRCMSSAIAR 298
           + +GAGA++L     A   G  +      +   G      +PP   G G    +  A+  
Sbjct: 279 VSDGAGAVLLMKRSVAMQLGLPVLGVFRDFAAVG------VPPAIMGIGPAVAIPKALKA 332

Query: 299 AKLLPSDIDY--INAHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA 355
           A L   DID   IN    S              +G     V+++    A+GH LGA GA
Sbjct: 333 AGLEVDDIDLFEINEAFASQALYCR------NKLGLDPEKVNVNGGAIALGHPLGATGA 385


>gnl|CDD|32520 COG2373, COG2373, Large extracellular alpha-helical protein
           [General function prediction only].
          Length = 1621

 Score = 29.2 bits (65), Expect = 2.0
 Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 210 FAACRALSTRFNDDPTRASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGA--KIYSEII 267
           F   R L     D   R    F Q     +   G G    +  E    R      +S I+
Sbjct: 910 FFGQRRLGVETRDIYGRIIDGF-QGVAKPLRTGGDGGRAAKQGEPPTRREKPVAAFSGIV 968

Query: 268 GYGLSGDAFHITMPPEDGNGAYRCMSSAI 296
                G A  +T P  D NG  R M+ A 
Sbjct: 969 ETDAQGKA-TVTFPIPDFNGRLRVMAVAW 996


>gnl|CDD|176657 cd06587, Glo_EDI_BRP_like, This domain superfamily is found in a
           variety of structurally related metalloproteins,
           including the type I extradiol dioxygenases, glyoxalase
           I and a group of antibiotic resistance proteins.  This
           domain superfamily is found in a variety of structurally
           related metalloproteins, including the type I extradiol
           dioxygenases, glyoxalase I and a group of antibiotic
           resistance proteins. A bound metal ion is required for
           protein activities for the members of this superfamily.
           A variety of metal ions have been found in the catalytic
           centers of these proteins including Fe(II), Mn(II),
           Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases
           catalyze the incorporation of both atoms of molecular
           oxygen into aromatic substrates, which results in the
           cleavage of aromatic rings. They are key enzymes in the
           degradation of aromatic compounds. Type I extradiol
           dioxygenases include class I and class II enzymes. Class
           I and II enzymes show sequence similarity; the
           two-domain class II enzymes evolved from a class I
           enzyme through gene duplication. Glyoxylase I catalyzes
           the glutathione-dependent inactivation of toxic
           methylglyoxal, requiring zinc or nickel ions for
           activity. The antibiotic resistance proteins in this
           family use a variety of mechanisms to block the function
           of antibiotics. Bleomycin resistance protein (BLMA)
           sequesters bleomycin's activity by directly binding to
           it. Whereas, three types of fosfomycin resistance
           proteins employ different mechanisms to render
           fosfomycin inactive by modifying the fosfomycin
           molecule. Although the proteins in this superfamily are
           functionally distinct, their structures are similar. The
           difference among the three dimensional structures of the
           three types of proteins in this superfamily is
           interesting from an evolutionary perspective. Both
           glyoxalase I and BLMA show domain swapping between
           subunits. However, there is no domain swapping for type
           1 extradiol dioxygenases.
          Length = 112

 Score = 29.3 bits (66), Expect = 2.2
 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 6/45 (13%)

Query: 246 ALVLEDL----EHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGN 286
           A  ++D+    E  KA G ++  E       G   +   P  DGN
Sbjct: 66  AFEVDDVDAAYERLKAAGVEVLGEPREEPWGGRVAYFRDP--DGN 108


>gnl|CDD|32336 COG2153, ElaA, Predicted acyltransferase [General function
           prediction only].
          Length = 155

 Score = 27.9 bits (62), Expect = 5.5
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 8/46 (17%)

Query: 263 YSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDY 308
           Y E+ G  L GD  H+     DG          +A A+LLP   +Y
Sbjct: 37  YPELDGKDLLGDTRHLLGWTPDGE--------LVAYARLLPPGAEY 74


>gnl|CDD|31876 COG1690, RtcB, Uncharacterized conserved protein [Function
           unknown].
          Length = 432

 Score = 28.0 bits (62), Expect = 5.5
 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 7   TGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDG 61
              G+I+P G G D++   +      +   D +  L  +  ++   IP G G+ G
Sbjct: 63  VDNGVISPGGVGFDINCG-VRLLRTNLDREDLQPRLPAVMDRLDRAIPRGVGTAG 116


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.319    0.136    0.402 

Gapped
Lambda     K      H
   0.267   0.0756    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 5,069,674
Number of extensions: 272532
Number of successful extensions: 693
Number of sequences better than 10.0: 1
Number of HSP's gapped: 630
Number of HSP's successfully gapped: 41
Length of query: 423
Length of database: 6,263,737
Length adjustment: 96
Effective length of query: 327
Effective length of database: 4,189,273
Effective search space: 1369892271
Effective search space used: 1369892271
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)