RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddA 21,609 sequences; 6,263,737 total letters Searching..................................................done Query= gi|254780533|ref|YP_003064946.1| 3-oxoacyl-(acyl carrier protein) synthase II [Candidatus Liberibacter asiaticus str. psy62] (423 letters) >gnl|CDD|29421 cd00834, KAS_I_II, Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II. KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.. Length = 406 Score = 500 bits (1289), Expect = e-142 Identities = 233/416 (56%), Positives = 297/416 (71%), Gaps = 11/416 (2%) Query: 2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDG 61 RRVV+TGLG +TPLG GV+ W L+AG GIR + +FD G S+IAG +P Sbjct: 1 RRVVITGLGAVTPLGNGVEEFWEALLAGRSGIRPI-TRFDASGFPSRIAGEVPD------ 53 Query: 62 TFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNR 121 F+ ED++ +LR++D+F + + A++ ALAD+G P + D GVV GSG+GGL Sbjct: 54 -FDPEDYLDRKELRRMDRFAQFALAAAEEALADAGLDP-EELDPERIGVVIGSGIGGLAT 111 Query: 122 IVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDA 181 I E+ L + GPR++SPF VP ++ ++ +G ++IR LRGPN+ V+TAC+SGAHAIGDA Sbjct: 112 IEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRLGLRGPNYTVSTACASGAHAIGDA 171 Query: 182 SRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMG 241 +RLI G ADV++AGGAEA I L +A FAA RALSTR NDDP +ASRPFD+DRDGFV+G Sbjct: 172 ARLIRLGRADVVIAGGAEALITPLTLAGFAALRALSTR-NDDPEKASRPFDKDRDGFVLG 230 Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKL 301 EGAG LVLE LEHAKARGAKIY+EI+GYG S DA+HIT P DG GA R M +A+A A L Sbjct: 231 EGAGVLVLESLEHAKARGAKIYAEILGYGASSDAYHITAPDPDGEGAARAMRAALADAGL 290 Query: 302 LPSDIDYINAHGTSTIA-DTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAAI 360 P DIDYINAHGTST D E A++R+ G+ V +SSTKS GHLLGAAGAVEA Sbjct: 291 SPEDIDYINAHGTSTPLNDAAESKAIKRVFGEHAKKVPVSSTKSMTGHLLGAAGAVEAIA 350 Query: 361 CNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLVF 416 LA+RDG++P T+NL+ P + +D VP+ A + + A+SNSFGFGG N SLVF Sbjct: 351 TLLALRDGVLPPTINLEEPDPECDLDYVPNEAREAPIRYALSNSFGFGGHNASLVF 406 >gnl|CDD|36608 KOG1394, KOG1394, KOG1394, 3-oxoacyl-(acyl-carrier-protein) synthase (I and II) [Lipid transport and metabolism, Secondary metabolites biosynthesis, transport and catabolism]. Length = 440 Score = 467 bits (1203), Expect = e-132 Identities = 219/426 (51%), Positives = 288/426 (67%), Gaps = 16/426 (3%) Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60 MRRVV+TG+G +TPLG GV SW L++GE GI L+ D + + +AG IP Sbjct: 23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLE-GPDYKSIPFTVAGKIP------ 75 Query: 61 GTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPK--TDKDRNSTGVVFGSGMGG 118 F+ ED++ D R++ +F + A++ AL D+G +++D+ TGV+ G+GMG Sbjct: 76 -RFSVEDYVSKGDERRMSKFTKLALTAAEEALKDAGLLDVNLSEEDKEKTGVLIGTGMGD 134 Query: 119 LNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAI 178 L I E++ L + G R++SPF VP + ++ +G +S++ LRGPNH+V+TAC++G H I Sbjct: 135 LEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSMKYGLRGPNHSVSTACATGNHCI 194 Query: 179 GDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGF 238 GDA I GDADVM+AGG+EA I L +A F+ RALSTR ND+P +ASRPFD+ RDGF Sbjct: 195 GDAFNFIRLGDADVMLAGGSEACINPLSLAGFSRARALSTR-NDNPQKASRPFDKKRDGF 253 Query: 239 VMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIAR 298 VMGEGAG LVLE+LEHAK RGA IY+E++GYGLS DA+HIT P DG GA M A+ Sbjct: 254 VMGEGAGVLVLEELEHAKKRGAPIYAEVLGYGLSSDAYHITSPDPDGAGAVLAMERALKD 313 Query: 299 AKLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVE 357 A L P DIDY+NAH TST + D E A++R+ G+ +SSTK A+GHLLGAAGAVE Sbjct: 314 AGLSPEDIDYVNAHATSTPLGDAAEAEAIKRVFGEHNIASKVSSTKGAIGHLLGAAGAVE 373 Query: 358 AAICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKK----NVNVAMSNSFGFGGTNVS 413 A LAI DG++P TLNL+NP +D VP +A +K V VA+SNSFGFGGTN S Sbjct: 374 AIFTVLAINDGVLPPTLNLENPDPGVDLDYVPLKASEKKGGNKVRVALSNSFGFGGTNAS 433 Query: 414 LVFRKF 419 L F KF Sbjct: 434 LCFAKF 439 >gnl|CDD|30652 COG0304, FabB, 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]. Length = 412 Score = 455 bits (1173), Expect = e-129 Identities = 230/423 (54%), Positives = 292/423 (69%), Gaps = 15/423 (3%) Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60 MRRVV+TGLG+++ LG GV+ W+ L+AG+ GIR + +FD GL KIAG I Sbjct: 2 MRRVVITGLGIVSSLGNGVEEVWAALLAGKSGIRPIT-RFDASGLGVKIAGEIK------ 54 Query: 61 GTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLN 120 + +D I + R +D+F +VA+ AL D+G + + D GV GSG+GGL Sbjct: 55 ---DLDDQIAKKERRFMDRFSQLAVVAAVEALEDAGLDNELNVD-MRVGVAIGSGIGGLE 110 Query: 121 RIVESSNVLRDGGPRK-ISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIG 179 I + L G RK ISPF VP + +L +GN++I L+GPN+ TAC++GAHAIG Sbjct: 111 DIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIVFGLKGPNYTPVTACATGAHAIG 170 Query: 180 DASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFV 239 DA RLI G ADV++AGGAEA I LG+A F A RALSTR NDDP +ASRPFD++RDGFV Sbjct: 171 DAVRLIRLGKADVVIAGGAEAAITPLGIAGFEAMRALSTR-NDDPEKASRPFDKNRDGFV 229 Query: 240 MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARA 299 +GEGAGALVLE+LEHA ARGAKIY+EI+GYG + DA+HIT P DG GA R M +A+A A Sbjct: 230 IGEGAGALVLEELEHALARGAKIYAEIVGYGTTSDAYHITAPAPDGEGAIRAMRAALADA 289 Query: 300 KLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEA 358 L P DIDYINAHGTST D E A++R+ G+ + +SSTKS GH LGAAGAVEA Sbjct: 290 GLTPEDIDYINAHGTSTPANDKAESLAIKRVFGEHAKSLPVSSTKSLTGHTLGAAGAVEA 349 Query: 359 AICNLAIRDGIVPATLNLDNPAKKTF-IDLVPHRAIKKNVNVAMSNSFGFGGTNVSLVFR 417 I LA+RDGI+P T+NLDNP + +D+VP+ A V A+SNSFGFGGTN SLVF+ Sbjct: 350 IISLLALRDGIIPPTINLDNPDPEAADLDVVPNEARTGAVRAALSNSFGFGGTNASLVFK 409 Query: 418 KFQ 420 ++Q Sbjct: 410 RYQ 412 >gnl|CDD|29415 cd00828, elong_cond_enzymes, "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases.They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.. Length = 407 Score = 222 bits (567), Expect = 1e-58 Identities = 144/421 (34%), Positives = 211/421 (50%), Gaps = 22/421 (5%) Query: 2 RRVVVTGLGMITPLGCG---VDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNG 58 RVV+TG+G+++P G G V+ W L G GI + + +AG IP Sbjct: 1 SRVVITGIGVVSPHGEGCDEVEEFWEALREGRSGIAPVARLKS--RFDRGVAGQIP---- 54 Query: 59 SDGTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGG 118 T + W +D+ L +VA++ ALAD+G + + GVV GSGMGG Sbjct: 55 ---TGDIPGWDAKR-TGIVDRTTLLALVATEEALADAGITDPYEVHPSEVGVVVGSGMGG 110 Query: 119 LNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQL-RGPNHAVTTACSSGAHA 177 L + + +SP + + ++G ++I GP AC++ A Sbjct: 111 LRFLRRGGKLDARAVNPYVSPKWML--SPNTVAGWVNILLLSSHGPIKTPVGACATALEA 168 Query: 178 IGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDG 237 + A I G AD++V GG E P+ G++ FA ALST ++P SRPFD+ RDG Sbjct: 169 LDLAVEAIRSGKADIVVVGGVEDPLE-EGLSGFANMGALSTA-EEEPEEMSRPFDETRDG 226 Query: 238 FVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIA 297 FV EGAG LVLE E A ARGA IY + G + D ++P G G R + +A+A Sbjct: 227 FVEAEGAGVLVLERAELALARGAPIYGRVAGTASTTDGAGRSVPA-GGKGIARAIRTALA 285 Query: 298 RAKLLPSDIDYINAHGTSTIA-DTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAV 356 +A L D+D I+AHGTST A D E A+ + G + +++ K+ GH GAAGA+ Sbjct: 286 KAGLSLDDLDVISAHGTSTPANDVAESRAIAEVAGALGAPLPVTAQKALFGHSKGAAGAL 345 Query: 357 EAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPH--RAIKKNVNVAMSNSFGFGGTNVSL 414 + ++ G++P T NLD+ V R + V A+ N+FGFGG+N +L Sbjct: 346 QLIGALQSLEHGLIPPTANLDDVDPDVEHLSVVGLSRDLNLKVRAALVNAFGFGGSNAAL 405 Query: 415 V 415 V Sbjct: 406 V 406 >gnl|CDD|29419 cd00832, CLF, Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria. CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.. Length = 399 Score = 210 bits (535), Expect = 7e-55 Identities = 133/417 (31%), Positives = 202/417 (48%), Gaps = 22/417 (5%) Query: 2 RRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDG 61 RR VVTG+G++ P G GV+ W ++ G G+ + +FD G +++AG +P Sbjct: 1 RRAVVTGIGVVAPNGLGVEEYWKAVLDGRSGLGPI-TRFDPSGYPARLAGEVP------- 52 Query: 62 TFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNR 121 F+ + + L + D+ + A+D ALAD+G P GVV S GG Sbjct: 53 DFDAAEHLPGRLLPQTDRMTRLALAAADWALADAGVDPAAL-PPYDMGVVTASAAGGFEF 111 Query: 122 IVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDA 181 L GPR +S + ++ +G ISIR+ +RGP+ V + G A+ A Sbjct: 112 GQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHGMRGPSGVVVAEQAGGLDALAQA 171 Query: 182 SRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMG 241 RL+ G ++V+GG ++ +C G + + LST +DDP RA PFD G+V G Sbjct: 172 RRLVRRG-TPLVVSGGVDSALCPWGWVAQLSSGRLST--SDDPARAYLPFDAAAAGYVPG 228 Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGA--YRCMSSAIARA 299 EG LVLED A+ RGA++Y EI GY + D PP G R + A+A A Sbjct: 229 EGGAILVLEDAAAARERGARVYGEIAGYAATFDP-----PPGSGRPPGLARAIRLALADA 283 Query: 300 KLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEA 358 L P D+D + A D E A+ + G V +++ K+ G L ++ Sbjct: 284 GLTPEDVDVVFADAAGVPELDRAEAAALAAVFGP--RGVPVTAPKTMTGRLYAGGAPLDV 341 Query: 359 AICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLV 415 A LA+RDG++P T+N+ + +DLV R + A+ + G GG N +LV Sbjct: 342 ATALLALRDGVIPPTVNVTDVPPAYGLDLVTGRPRPAALRTALVLARGRGGFNSALV 398 >gnl|CDD|143886 pfam00109, ketoacyl-synt, Beta-ketoacyl synthase, N-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. The N-terminal domain contains most of the structures involved in dimer formation and also the active site cysteine. Length = 243 Score = 209 bits (534), Expect = 1e-54 Identities = 90/255 (35%), Positives = 124/255 (48%), Gaps = 12/255 (4%) Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSD 60 V +TG+G P G G + W L+AG IR S++AG I + Sbjct: 1 AEPVAITGMGCRFPGGVGPEEFWELLLAGRDAIREFPADLSGLYPPSRVAGEIYGFDFDA 60 Query: 61 GTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLN 120 F I + +D + A+ AL D+G P + + + TGV GSG G Sbjct: 61 AFFG----ISPREAEAMDPQQRLALEAAWEALEDAGLDPASLRGSDRTGVFVGSGSGDYA 116 Query: 121 RIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGD 180 E + GGPR+ SP+ + S+ +G IS R LRGP+ V TACSS A+ Sbjct: 117 ---ELQALDSAGGPRRGSPYLTGAWMPSVAAGRISYRLGLRGPSVTVDTACSSSLVALHA 173 Query: 181 ASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVM 240 A R I G+ D+ +AGG EAP+ G A F+A AL + D P +A PF DGFV Sbjct: 174 AVRSIRRGECDLALAGGVEAPLTPGGFAGFSAAGALLSP--DGPCKAFDPFA---DGFVR 228 Query: 241 GEGAGALVLEDLEHA 255 GEG GA++L++L A Sbjct: 229 GEGVGAVLLKELSEA 243 >gnl|CDD|29420 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations. PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.. Length = 421 Score = 195 bits (496), Expect = 3e-50 Identities = 127/437 (29%), Positives = 188/437 (43%), Gaps = 40/437 (9%) Query: 3 RVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHL-DQKFDLEGLSSKIAGLIPVGNGSDG 61 + + G+ P D W L+ G I + + ++D +G G Sbjct: 2 PIAIVGMACRFPGAADPDEFWENLLEGRDAISEIPEDRWDADGYYPDPGKPGKTYTRRGG 61 Query: 62 TFNYEDW-------ILSSDLRKID-QFILYGMVASDMALADSGWAPKTDKDRNSTGVVFG 113 + D I + +D Q L VA + AL D+G++P++ TGV G Sbjct: 62 FLDDVDAFDAAFFGISPREAEAMDPQQRLLLEVAWE-ALEDAGYSPESLAGSR-TGVFVG 119 Query: 114 SGMGGLNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSS 173 + ++ P +I + G+ + L+ IS LRGP+ V TACSS Sbjct: 120 ASSSDYLELLARD-------PDEIDAYAATGTSRAFLANRISYFFDLRGPSLTVDTACSS 172 Query: 174 GAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQ 233 A+ A + + G+ D+ + GG + F+ LS P RPFD Sbjct: 173 SLVALHLACQSLRSGECDLALVGGVNLILSPDMFVGFSKAGMLS------PDGRCRPFDA 226 Query: 234 DRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLS--GDAFHITMPPEDGNGAYRC 291 D DG+V GEG G +VL+ L A G +IY+ I G ++ G IT P G Sbjct: 227 DADGYVRGEGVGVVVLKRLSDALRDGDRIYAVIRGSAVNQDGRTKGITAP--SGEAQAAL 284 Query: 292 MSSAIARAKLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVS---MSSTKSAMG 347 + A ARA + PSDIDY+ AHGT T + D IE+ A+ ++ G S + S KS +G Sbjct: 285 IRRAYARAGVDPSDIDYVEAHGTGTPLGDPIEVEALAKVFGGSRSADQPLLIGSVKSNIG 344 Query: 348 HLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFID----LVPHRAI----KKNVNV 399 HL AAG LA+ G++P L+ + P K + VP A Sbjct: 345 HLEAAAGLAGLIKVVLALEHGVIPPNLHFETPNPKIDFEESPLRVPTEARPWPAPAGPRR 404 Query: 400 AMSNSFGFGGTNVSLVF 416 A +SFGFGGTN ++ Sbjct: 405 AGVSSFGFGGTNAHVIL 421 >gnl|CDD|73238 cd00825, decarbox_cond_enzymes, decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction. Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).. Length = 332 Score = 169 bits (428), Expect = 1e-42 Identities = 113/334 (33%), Positives = 167/334 (50%), Gaps = 17/334 (5%) Query: 83 YGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGGLNRIVESSNVLRDGGPRKISPFTV 142 G A++ A+AD+G + + K+ GVV G+G G V R + P+ V Sbjct: 14 LGFEAAERAIADAGLSREYQKNP-IVGVVVGTGGGS-----PRFQVFGADAMRAVGPYVV 67 Query: 143 PGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPI 202 ++ SG I+ + GP + V+ AC+ HA+ A+ + G D+++AGG+E Sbjct: 68 TKAMFPGASGQIATPLGIHGPAYDVSAACAGSLHALSLAADAVQNGKQDIVLAGGSEEL- 126 Query: 203 CRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKI 262 F A ALST P +ASR FD DGFV G+GAGALV+E+LEHA ARGA I Sbjct: 127 AAPMDCEFDAMGALST-----PEKASRTFDAAADGFVFGDGAGALVVEELEHALARGAHI 181 Query: 263 YSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTST-IADTI 321 Y+EI+G + D + G R A+A A L DIDY+ AHGT T I D Sbjct: 182 YAEIVGTAATIDGAGMGAFAPSAEGLARAAKEALAVAGLTVWDIDYLVAHGTGTPIGDVK 241 Query: 322 ELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAK 381 EL + GD ++S+TK+ G+L AA + L + G +P +++++ + Sbjct: 242 ELKLLRSEFGD--KSPAVSATKAMTGNLSSAAVVLAVDEAVLMLEHGFIPPSIHIEELDE 299 Query: 382 KTFIDLVPHRAIKKNVNVAMSNSFGFGGTNVSLV 415 + + + A+ N FG GGTN +LV Sbjct: 300 A--GLNIVTETTPRELRTALLNGFGLGGTNATLV 331 >gnl|CDD|33130 COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]. Length = 1061 Score = 145 bits (367), Expect = 2e-35 Identities = 105/342 (30%), Positives = 161/342 (47%), Gaps = 37/342 (10%) Query: 91 ALADSGWAPKTDKDRNSTGVVFGSGMGG-LNRIVESSNVLRDGGPRKISPFTVPGSIISL 149 AL D+G P + ++TGV G+ + L ++ + + G+ S+ Sbjct: 102 ALEDAGIYPDSL-RGSATGVFAGASVADYLLLLLAD--------DEAEPEYAITGNSSSV 152 Query: 150 LSGNISIRNQLRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVAS 209 +G IS L GP+ V TACSS A+ A + + G+ D+ +AGG + Sbjct: 153 AAGRISYVLGLSGPSVTVDTACSSSLVAVHLACQSLRLGECDLALAGGVNLVLSPESSYL 212 Query: 210 FAACRALSTRFNDDPTRASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGY 269 F+A LS P + FD D DG+V GEGAG +VL+ L A+ G +IY+ I G Sbjct: 213 FSAGGMLS------PDGRCKAFDADADGYVRGEGAGVVVLKRLSDAERDGDRIYAVIRGS 266 Query: 270 GLSGD--AFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTST-IADTIELGAV 326 ++ D + +T P + + A+A A + P+ + Y+ AHGT T + D IE A+ Sbjct: 267 AVNQDGRSNGLTAP--NLEAQADVIREALADAGIDPATVQYVEAHGTGTPLGDPIEANAL 324 Query: 327 ERLMGDSCY--HVSMSSTKSAMGHLLGAAGAVEAAICN---LAIRDGIVPATLNLDNPAK 381 + G+ ++ S KS +GHL AAG A LA++ G +P TL+ D P Sbjct: 325 GAVYGEGAPAQPCAIGSVKSNIGHLEAAAG---IAGLIKTALALKHGYIPPTLHFDTPNP 381 Query: 382 KTFID----LVPHRAIKKNVNV----AMSNSFGFGGTNVSLV 415 + D +VP A A +SFGFGGTN ++ Sbjct: 382 EIDFDSSPFVVPTEATPWPTGGGPRRAGVSSFGFGGTNAHVI 423 >gnl|CDD|145778 pfam02801, Ketoacyl-synt_C, Beta-ketoacyl synthase, C-terminal domain. The structure of beta-ketoacyl synthase is similar to that of the thiolase family (pfam00108) and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains. Length = 117 Score = 130 bits (330), Expect = 5e-31 Identities = 45/117 (38%), Positives = 65/117 (55%), Gaps = 2/117 (1%) Query: 263 YSEIIGYGLSGD-AFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTST-IADT 320 Y+ I G ++ D A H + +G R + +A+A A L P D+DY+ AHGT T + D Sbjct: 1 YAVIRGSAVNQDGAAHNGLTAPNGPAQARAIRAALADAGLDPEDVDYVEAHGTGTPLGDP 60 Query: 321 IELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLD 377 IE A++ + G + + S KS +GHL AAG LA+R G++P TLNLD Sbjct: 61 IEAEALKAVFGPGRRPLPVGSVKSNIGHLEAAAGVAGLIKAVLALRHGVIPPTLNLD 117 >gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]. Length = 2376 Score = 103 bits (258), Expect = 9e-23 Identities = 104/429 (24%), Positives = 180/429 (41%), Gaps = 36/429 (8%) Query: 1 MRRVVVTGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFD--LEGLSSKIAGLIPVGNG 58 +V++G+ P V L+AG + ++++ L GL + L + Sbjct: 10 QEDIVISGMSGKLPESDNVKEFGDNLLAGVDMVTDDPRRWEAGLYGLPKRSGKLKDLNKF 69 Query: 59 SDGTFNYEDWILSSDLRKIDQFILYGMVASDMALADSGWAPKTDKDRNSTGVVFGSGMGG 118 G F + +D + + A+ A+ D+G P D + TGV G Sbjct: 70 DAGFFG----VHPKQANTMDPQLRLLLEATWEAIVDAGINP-DDLRGSRTGVFVGVSG-- 122 Query: 119 LNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTACSSGAHAI 178 E+S L P ++ +++ G + ++ + IS +GP+ +V TACSS A+ Sbjct: 123 ----SETSGALSQD-PDTVNGYSMTGCVRAMFANRISYTFDFQGPSFSVDTACSSSLMAL 177 Query: 179 GDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTRASRPFDQDRDGF 238 +A + I G D + GA + F LS P + + FD+ +G+ Sbjct: 178 QNAFQDIRSGQCDAAIVAGANLILKPTTSLQFLRLGMLS------PDGSCKAFDEAGNGY 231 Query: 239 VMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFH---ITMPPEDGNGAYRCMSSA 295 EG A++L+ A+ ++Y+ I+ + D F +T P G+ + + Sbjct: 232 CRSEGVVAVLLQRKSLAR----RVYATILNARTNTDGFKEQGVTFP--SGDMQEQLIRET 285 Query: 296 IARAKLLPSDIDYINAHGTST-IADTIELGAVER-LMGDSCYHVSMSSTKSAMGHLLGAA 353 + A L P + Y+ AHGT T + D E + R + + S KS MGH A+ Sbjct: 286 YSEAGLNPESVVYVEAHGTGTKVGDPQEANGITRFFCATRTTPLLIGSVKSNMGHAEPAS 345 Query: 354 GAVEAAICNLAIRDGIVPATL--NLDNPAKKTFID---LVPHRAIKKNVNVAMSNSFGFG 408 G A L++ +G++P L N NP +D V R + + NSFGFG Sbjct: 346 GVCALAKILLSMEEGLIPPNLHYNTPNPEIPALVDGRLKVVDRPLPWRGGIVGINSFGFG 405 Query: 409 GTNVSLVFR 417 G+N ++ + Sbjct: 406 GSNAHVILK 414 >gnl|CDD|73194 cd00327, cond_enzymes, Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.. Length = 254 Score = 103 bits (258), Expect = 1e-22 Identities = 75/256 (29%), Positives = 102/256 (39%), Gaps = 63/256 (24%) Query: 162 GPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFN 221 GP ++V AC++G A+ A + + G AD+++AGG+E Sbjct: 59 GPAYSVNQACATGLTALALAVQQVQNGKADIVLAGGSEE--------------------- 97 Query: 222 DDPTRASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGD-AFHITM 280 FV G+GA A V+E EHA RGA +EI+ + D A + Sbjct: 98 ----------------FVFGDGAAAAVVESEEHALRRGAHPQAEIVSTAATFDGASMVPA 141 Query: 281 PPEDGNGAYRCMSSAIARAKLLPSDIDYINAHGTST-IADTIELGAVERLMGDSCYHVSM 339 G G R A+ A L PSDIDY+ AHGT T I D +EL G V Sbjct: 142 V--SGEGLARAARKALEGAGLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAV-- 197 Query: 340 SSTKSAMGHLLGAAGAVEAAICNLAIRDGIVPATLNLDNPAKKTFIDLVPHRAIKKNVNV 399 S+T GH LGAAG L + +P T + Sbjct: 198 SATLIMTGHPLGAAGLAILDELLLMLEHEFIPPT---PREPRT----------------- 237 Query: 400 AMSNSFGFGGTNVSLV 415 + FG GGTN ++V Sbjct: 238 VLLLGFGLGGTNAAVV 253 >gnl|CDD|143885 pfam00108, Thiolase_N, Thiolase, N-terminal domain. Thiolase is reported to be structurally related to beta-ketoacyl synthase (pfam00109), and also chalcone synthase. Length = 264 Score = 46.1 bits (110), Expect = 2e-05 Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 4/45 (8%) Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE----APIC 203 P + C SG A+ A++ I GDAD++VAGG E AP Sbjct: 80 PAVTINKVCGSGLKAVALAAQAIRAGDADIVVAGGVESMSNAPYV 124 >gnl|CDD|29411 cd00751, thiolase, Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.. Length = 386 Score = 43.9 bits (104), Expect = 7e-05 Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 7/85 (8%) Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFND 222 P V C SG A+ A++ IA G+ADV+VAGG E + A + +A Sbjct: 76 PATTVNRVCGSGLQAVALAAQSIAAGEADVVVAGGVE----SMSRAPYLLPKARRGGRLG 131 Query: 223 DPTRASRPFDQDRDGFV---MGEGA 244 T D D F MG A Sbjct: 132 LNTLDGMLDDGLTDPFTGLSMGITA 156 Score = 39.3 bits (92), Expect = 0.002 Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 9/113 (7%) Query: 243 GAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLL 302 GA A++L E AK G K + I+GY ++G P G G + A+ RA L Sbjct: 247 GAAAVLLMSEEKAKELGLKPLARIVGYAVAGVD-----PAIMGIGPVPAIPKALKRAGLT 301 Query: 303 PSDIDYINAHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA 355 DID I + A + A + +G V+++ A+GH LGA+GA Sbjct: 302 LDDIDLIEINE----AFAAQALACLKELGLDPEKVNVNGGAIALGHPLGASGA 350 >gnl|CDD|30532 COG0183, PaaJ, Acetyl-CoA acetyltransferase [Lipid metabolism]. Length = 392 Score = 38.4 bits (89), Expect = 0.004 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%) Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE----APICRLGV 207 P V AC+SG A+ A++ IA G+ADV++AGG E AP+ R GV Sbjct: 84 PAVTVNRACASGLAAVRLAAQAIASGEADVVLAGGVEKMSDAPMGREGV 132 Score = 30.7 bits (69), Expect = 0.86 Identities = 32/118 (27%), Positives = 46/118 (38%), Gaps = 13/118 (11%) Query: 243 GAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLL 302 GA AL+L AK G + I Y ++G + P +G + A+ A LL Sbjct: 249 GAAALLLMSESKAKELGLAPLAAIRAYAMAG------VDPSIMDGPVAAVHDALTIAGLL 302 Query: 303 -PSDIDYINAHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGAVEAA 359 D+ + LG + L GD V+ S A+GH +GA GA Sbjct: 303 ALEDLGLAEKGEA---FAAVALGVTKIL-GD--LPVNPSGGAIALGHPIGATGARILV 354 >gnl|CDD|36606 KOG1392, KOG1392, KOG1392, Acetyl-CoA acetyltransferase [Lipid transport and metabolism]. Length = 465 Score = 37.7 bits (87), Expect = 0.006 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 7/73 (9%) Query: 134 PRKISPFTVPGSIIS-LLSGNISIRNQL------RGPNHAVTTACSSGAHAIGDASRLIA 186 P++ + + G++I + + NI+ L + P H VT AC S A+ LIA Sbjct: 84 PKEQLDYIICGTVIQEVKTSNIAREAALLAGFSDKTPAHTVTMACISSNVAMTTGMGLIA 143 Query: 187 FGDADVMVAGGAE 199 G+ADV+VAGG E Sbjct: 144 TGNADVIVAGGVE 156 >gnl|CDD|29416 cd00829, SCP-x_thiolase, Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism. The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.. Length = 375 Score = 34.5 bits (79), Expect = 0.057 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 3/90 (3%) Query: 236 DGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDG--NGAYRCMS 293 D + +GA A+VL E A+ + I+G G + D ++ + + A Sbjct: 200 DCCPVSDGAAAVVLASEERARELTDR-PVWILGVGAASDTPSLSERDDFLSLDAARLAAR 258 Query: 294 SAIARAKLLPSDIDYINAHGTSTIADTIEL 323 A A + P DID + TIA+ + L Sbjct: 259 RAYKMAGITPDDIDVAELYDCFTIAELLAL 288 Score = 33.7 bits (77), Expect = 0.098 Identities = 17/42 (40%), Positives = 23/42 (54%) Query: 160 LRGPNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAP 201 L P V A +SG+ A+ A+ IA G ADV++ GAE Sbjct: 66 LGKPATRVEAAGASGSAAVRAAAAAIASGLADVVLVVGAEKM 107 >gnl|CDD|36604 KOG1390, KOG1390, KOG1390, Acetyl-CoA acetyltransferase [Lipid transport and metabolism]. Length = 396 Score = 33.7 bits (77), Expect = 0.10 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 15/117 (12%) Query: 242 EGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKL 301 +GA A+VL E AK G K + I+ +G + T P + + A+ +A L Sbjct: 255 DGAAAVVLMSGEAAKELGLKPLARIVAWGDAA-----TEPIDFTIAPALAIPKALKKAGL 309 Query: 302 LPSDIDY--IN-AHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA 355 SD+DY IN A +A+ +LG V++ A+GH LG +GA Sbjct: 310 EQSDVDYWEINEAFSVVVLANIKKLGLDPSK-------VNVHGGAVALGHPLGMSGA 359 Score = 33.3 bits (76), Expect = 0.14 Identities = 15/34 (44%), Positives = 22/34 (64%) Query: 167 VTTACSSGAHAIGDASRLIAFGDADVMVAGGAEA 200 V C+SG A+ A++ I G AD++VAGG E+ Sbjct: 88 VNKVCASGMKAVILAAQSIQTGHADIVVAGGMES 121 >gnl|CDD|36605 KOG1391, KOG1391, KOG1391, Acetyl-CoA acetyltransferase [Lipid transport and metabolism]. Length = 396 Score = 33.1 bits (75), Expect = 0.14 Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 9/116 (7%) Query: 240 MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARA 299 + +GAGA+++ + K K + I+ Y + G P G G +S + ++ Sbjct: 252 IADGAGAVIVASEDAVKKHNLKPLARIVAYSVVG-----CDPSIMGIGPVPAISGVLKKS 306 Query: 300 KLLPSDIDYINAHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA 355 L DID + + A + AVER + ++++ A+GH LGA+G+ Sbjct: 307 GLKLKDIDLVEVNE----AFAPQYLAVERSLDLDISKLNVNGGAIALGHPLGASGS 358 Score = 27.7 bits (61), Expect = 6.6 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%) Query: 163 PNHAVTTACSSGAHAIGDASRLIAFGDADVMVAGGAE----APIC 203 P + C SG +I + ++ I G+A++++ GG E AP C Sbjct: 83 PALTINRLCGSGFQSIVNGAQEICVGEAEIVLCGGTENMSQAPFC 127 >gnl|CDD|30680 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein]. Length = 323 Score = 32.5 bits (74), Expect = 0.22 Identities = 40/165 (24%), Positives = 57/165 (34%), Gaps = 43/165 (26%) Query: 167 VTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTR 226 + ACS +A+ A LI G ++ GAE +R D R Sbjct: 109 LQAACSGFLYALSVADGLIRSGGYKNVLVVGAE----------------TLSRILDWTDR 152 Query: 227 ASRPFDQDRDGFVMGEGAGALVLEDLE--------HAKARGAKIYSEIIGYGLSG----- 273 + + G+GAGA+VLE E + G++ + G S Sbjct: 153 DTC--------VLFGDGAGAVVLEATEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEE 204 Query: 274 -DAFHITMP-PEDGNGAYRCMSSAI----ARAKLLPSDIDYINAH 312 + M E A R M AI +A L P DID+ H Sbjct: 205 SGGGLLVMDGREVFKFAVRAMPKAIEEVLEKAGLTPEDIDWFVPH 249 >gnl|CDD|29417 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.. Length = 320 Score = 31.3 bits (71), Expect = 0.56 Identities = 39/167 (23%), Positives = 59/167 (35%), Gaps = 45/167 (26%) Query: 167 VTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTR 226 + ACS + + A+ LI G A ++ GAE +R D R Sbjct: 107 INAACSGFLYGLSTAAGLIRSGGAKNVLVVGAET----------------LSRILDWTDR 150 Query: 227 ASRPFDQDRDGFVMGEGAGALVLEDLEHAKA-RGAKIYSEIIGYG-LSGDAFHITMPPED 284 ++ + G+GAGA+VLE E + + S+ G L+ A P ED Sbjct: 151 STA--------VLFGDGAGAVVLEATEEDPGILDSVLGSDGSGADLLTIPAGGSRSPFED 202 Query: 285 GNGAYRCM-------------------SSAIARAKLLPSDIDYINAH 312 G + A+ +A L P DID+ H Sbjct: 203 AEGGDPYLVMDGREVFKFAVRLMPESIEEALEKAGLTPDDIDWFVPH 249 >gnl|CDD|73239 cd00826, nondecarbox_cond_enzymes, nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine. There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.. Length = 393 Score = 31.0 bits (69), Expect = 0.58 Identities = 31/113 (27%), Positives = 44/113 (38%), Gaps = 15/113 (13%) Query: 167 VTTACSSGAHAIGDASRLIAFGDADVMVAGGAEAPICRLGVASFAACRALSTRFNDDPTR 226 + C SG A+ A +LIA GDA+ ++AGG E + A + + N R Sbjct: 81 MNNLCGSGLRALALAMQLIAGGDANCILAGGFEK--METSAENNAKEKHIDVLINKYGMR 138 Query: 227 ASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHIT 279 A D F + AGA E A+ G E +G+ G I Sbjct: 139 A------CPDAFALAGQAGA------EAAEKDGRFK-DEFAKFGVKGRKGDIH 178 >gnl|CDD|31955 COG1769, COG1769, Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) [DNA replication, recombination, and repair]. Length = 335 Score = 30.4 bits (68), Expect = 0.98 Identities = 10/49 (20%), Positives = 17/49 (34%) Query: 122 IVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIRNQLRGPNHAVTTA 170 +V + + GG K F I + I+N + +T A Sbjct: 193 LVSGLDGVFLGGESKWVAFEHVEEINTTAFDPPKIKNVAYYKVYLITPA 241 >gnl|CDD|36603 KOG1389, KOG1389, KOG1389, 3-oxoacyl CoA thiolase [Lipid transport and metabolism]. Length = 435 Score = 30.0 bits (67), Expect = 1.3 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 12/89 (13%) Query: 119 LNRIVESSNVLRDGGPRKISPFTVPGSIISLLSGNISIR-NQLRG------PNHAVTTAC 171 L ++E +N+ P I V G++++ SG R P V C Sbjct: 69 LRAVIEKTNL----DPSLIGDIVV-GTVLAPGSGASECRMAAFYAGFPETVPVRTVNRQC 123 Query: 172 SSGAHAIGDASRLIAFGDADVMVAGGAEA 200 SSG A+ D + I G D+ +A G E+ Sbjct: 124 SSGLQAVADIAAKIRAGFYDIGLAAGVES 152 Score = 27.3 bits (60), Expect = 7.7 Identities = 31/119 (26%), Positives = 45/119 (37%), Gaps = 15/119 (12%) Query: 240 MGEGAGALVLEDLEHAKARGAKIYSEIIGYGLSGDAFHITMPPED-GNGAYRCMSSAIAR 298 + +GAGA++L A G + + G +PP G G + A+ Sbjct: 279 VSDGAGAVLLMKRSVAMQLGLPVLGVFRDFAAVG------VPPAIMGIGPAVAIPKALKA 332 Query: 299 AKLLPSDIDY--INAHGTSTIADTIELGAVERLMGDSCYHVSMSSTKSAMGHLLGAAGA 355 A L DID IN S +G V+++ A+GH LGA GA Sbjct: 333 AGLEVDDIDLFEINEAFASQALYCR------NKLGLDPEKVNVNGGAIALGHPLGATGA 385 >gnl|CDD|32520 COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]. Length = 1621 Score = 29.2 bits (65), Expect = 2.0 Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 4/89 (4%) Query: 210 FAACRALSTRFNDDPTRASRPFDQDRDGFVMGEGAGALVLEDLEHAKARGA--KIYSEII 267 F R L D R F Q + G G + E R +S I+ Sbjct: 910 FFGQRRLGVETRDIYGRIIDGF-QGVAKPLRTGGDGGRAAKQGEPPTRREKPVAAFSGIV 968 Query: 268 GYGLSGDAFHITMPPEDGNGAYRCMSSAI 296 G A +T P D NG R M+ A Sbjct: 969 ETDAQGKA-TVTFPIPDFNGRLRVMAVAW 996 >gnl|CDD|176657 cd06587, Glo_EDI_BRP_like, This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. This domain superfamily is found in a variety of structurally related metalloproteins, including the type I extradiol dioxygenases, glyoxalase I and a group of antibiotic resistance proteins. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). Type I extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into aromatic substrates, which results in the cleavage of aromatic rings. They are key enzymes in the degradation of aromatic compounds. Type I extradiol dioxygenases include class I and class II enzymes. Class I and II enzymes show sequence similarity; the two-domain class II enzymes evolved from a class I enzyme through gene duplication. Glyoxylase I catalyzes the glutathione-dependent inactivation of toxic methylglyoxal, requiring zinc or nickel ions for activity. The antibiotic resistance proteins in this family use a variety of mechanisms to block the function of antibiotics. Bleomycin resistance protein (BLMA) sequesters bleomycin's activity by directly binding to it. Whereas, three types of fosfomycin resistance proteins employ different mechanisms to render fosfomycin inactive by modifying the fosfomycin molecule. Although the proteins in this superfamily are functionally distinct, their structures are similar. The difference among the three dimensional structures of the three types of proteins in this superfamily is interesting from an evolutionary perspective. Both glyoxalase I and BLMA show domain swapping between subunits. However, there is no domain swapping for type 1 extradiol dioxygenases. Length = 112 Score = 29.3 bits (66), Expect = 2.2 Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 6/45 (13%) Query: 246 ALVLEDL----EHAKARGAKIYSEIIGYGLSGDAFHITMPPEDGN 286 A ++D+ E KA G ++ E G + P DGN Sbjct: 66 AFEVDDVDAAYERLKAAGVEVLGEPREEPWGGRVAYFRDP--DGN 108 >gnl|CDD|32336 COG2153, ElaA, Predicted acyltransferase [General function prediction only]. Length = 155 Score = 27.9 bits (62), Expect = 5.5 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 8/46 (17%) Query: 263 YSEIIGYGLSGDAFHITMPPEDGNGAYRCMSSAIARAKLLPSDIDY 308 Y E+ G L GD H+ DG +A A+LLP +Y Sbjct: 37 YPELDGKDLLGDTRHLLGWTPDGE--------LVAYARLLPPGAEY 74 >gnl|CDD|31876 COG1690, RtcB, Uncharacterized conserved protein [Function unknown]. Length = 432 Score = 28.0 bits (62), Expect = 5.5 Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Query: 7 TGLGMITPLGCGVDVSWSRLIAGEVGIRHLDQKFDLEGLSSKIAGLIPVGNGSDG 61 G+I+P G G D++ + + D + L + ++ IP G G+ G Sbjct: 63 VDNGVISPGGVGFDINCG-VRLLRTNLDREDLQPRLPAVMDRLDRAIPRGVGTAG 116 Database: CddA Posted date: Feb 4, 2011 9:38 PM Number of letters in database: 6,263,737 Number of sequences in database: 21,609 Lambda K H 0.319 0.136 0.402 Gapped Lambda K H 0.267 0.0756 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21609 Number of Hits to DB: 5,069,674 Number of extensions: 272532 Number of successful extensions: 693 Number of sequences better than 10.0: 1 Number of HSP's gapped: 630 Number of HSP's successfully gapped: 41 Length of query: 423 Length of database: 6,263,737 Length adjustment: 96 Effective length of query: 327 Effective length of database: 4,189,273 Effective search space: 1369892271 Effective search space used: 1369892271 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 59 (26.5 bits)