Query gi|254780534|ref|YP_003064947.1| acyl carrier protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 85 No_of_seqs 105 out of 1696 Neff 6.9 Searched_HMMs 23785 Date Tue May 31 20:02:25 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780534.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2dnw_A Acyl carrier protein; A 99.8 6.7E-19 2.8E-23 125.6 7.7 82 2-84 10-91 (99) 2 3gzm_A Acyl carrier protein; h 99.7 5.1E-18 2.1E-22 120.6 9.3 79 4-83 2-80 (81) 3 2l4b_A Acyl carrier protein; i 99.7 1E-17 4.2E-22 119.0 10.0 82 2-84 3-87 (88) 4 1f80_D Acyl carrier protein; t 99.7 1.4E-18 5.9E-23 123.8 5.5 80 2-82 2-81 (81) 5 1l0i_A Acyl carrier protein; a 99.7 6.1E-18 2.5E-22 120.2 7.3 76 7-83 3-78 (78) 6 2cnr_A FAS, ACP, acyl carrier 99.7 1.2E-17 5E-22 118.6 7.3 81 1-82 1-81 (82) 7 2ehs_A ACP, acyl carrier prote 99.7 4.3E-17 1.8E-21 115.4 8.7 74 8-82 2-75 (77) 8 1klp_A ACP, ACPM, meromycolate 99.7 5.4E-17 2.3E-21 114.9 9.1 83 1-84 1-83 (115) 9 2kwl_A ACP, acyl carrier prote 99.7 6.4E-17 2.7E-21 114.5 8.5 81 2-83 4-84 (84) 10 2qnw_A Acyl carrier protein; m 99.7 1.3E-16 5.4E-21 112.8 9.3 79 3-82 3-81 (82) 11 1x3o_A Acyl carrier protein; s 99.7 1.6E-16 6.9E-21 112.2 9.3 79 3-82 1-79 (80) 12 3ejb_A Acyl carrier protein; p 99.6 1.8E-16 7.5E-21 112.0 6.8 78 5-83 20-97 (97) 13 2ava_A ACP I, acyl carrier pro 99.6 1.4E-16 5.7E-21 112.6 6.2 80 4-84 1-80 (82) 14 2kci_A Putative acyl carrier p 99.6 1.5E-15 6.5E-20 106.7 6.9 76 8-84 3-78 (87) 15 2l3v_A ACP, acyl carrier prote 99.6 1.6E-16 6.6E-21 112.3 1.3 78 4-82 1-78 (79) 16 1vku_A Acyl carrier protein; T 99.6 2.5E-15 1.1E-19 105.6 7.5 80 2-83 12-91 (100) 17 1dv5_A APO-DCP, APO-D-alanyl c 99.6 5.7E-16 2.4E-20 109.1 3.7 78 4-82 1-80 (80) 18 2cgq_A Acyl carrier protein AC 99.6 6E-15 2.5E-19 103.4 6.9 77 4-82 23-99 (113) 19 2kw2_A Specialized acyl carrie 99.5 1.6E-15 6.8E-20 106.6 3.3 74 7-81 3-76 (101) 20 3ce7_A Specific mitochodrial a 99.5 1.8E-14 7.8E-19 100.7 8.0 80 5-84 17-99 (107) 21 2amw_A Hypothetical protein NE 99.4 1E-13 4.2E-18 96.6 6.2 76 8-83 3-82 (83) 22 2jq4_A AGR_C_4658P, hypothetic 99.4 3.1E-13 1.3E-17 93.8 8.2 81 3-84 18-101 (105) 23 1nq4_A Oxytetracycline polyket 99.4 3E-13 1.2E-17 93.9 6.2 80 2-83 3-82 (95) 24 1af8_A Actinorhodin polyketide 99.3 3.6E-13 1.5E-17 93.5 2.6 79 3-83 5-83 (86) 25 2afd_A Protein ASL1650; twiste 99.3 7E-12 3E-16 86.2 8.8 78 2-81 9-86 (88) 26 2kr5_A PKS, aflatoxin biosynth 99.2 7.4E-12 3.1E-16 86.1 6.0 79 4-84 8-88 (89) 27 1or5_A Acyl carrier protein; A 99.1 2.7E-11 1.1E-15 83.0 4.3 73 10-84 7-82 (83) 28 2ju1_A Erythronolide synthase; 99.1 2.4E-10 9.9E-15 77.7 7.7 76 6-82 19-94 (95) 29 1fh1_A NODF, nodulation protei 99.1 3.4E-12 1.4E-16 88.0 -1.7 76 6-83 11-86 (92) 30 1dny_A Non-ribosomal peptide s 98.9 4.5E-09 1.9E-13 70.5 7.9 74 5-82 12-85 (91) 31 2cg5_B Fatty acid synthase; tr 98.8 4.7E-09 2E-13 70.4 5.1 75 6-83 5-80 (91) 32 2cq8_A 10-formyltetrahydrofola 98.6 1.4E-07 5.9E-12 62.1 8.6 77 4-83 22-99 (110) 33 2jgp_A Tyrocidine synthetase 3 98.6 1.4E-07 5.7E-12 62.2 8.1 75 6-84 9-83 (520) 34 2roq_A Enterobactin synthetase 98.4 2.5E-07 1E-11 60.8 4.7 73 6-82 16-88 (343) 35 2vsq_A Surfactin synthetase su 98.2 1.7E-06 7.2E-11 56.1 4.7 75 5-83 970-1044(1304) 36 2vz8_A Fatty acid synthase; tr 97.6 6.2E-06 2.6E-10 52.9 0.0 70 8-79 2124-2193(2512) 37 2fq1_A Isochorismatase; ENTB, 96.2 0.0062 2.6E-07 36.1 5.0 70 10-83 218-287 (287) 38 1rqt_A L8, 50S ribosomal prote 69.9 2.1 8.8E-05 22.0 2.3 21 40-60 14-34 (37) 39 2oai_A Hemolysin; PFAM03471, s 56.6 5.7 0.00024 19.5 2.5 31 49-79 28-58 (94) 40 1dd4_C 50S ribosomal protein L 46.1 11 0.00047 17.9 2.6 23 39-61 12-34 (40) 41 1v32_A AT5G08430, hypothetical 42.0 18 0.00075 16.8 3.1 57 2-58 34-92 (101) 42 3gwh_A Transcriptional antiter 31.9 28 0.0012 15.6 2.9 22 45-66 79-100 (111) 43 2rg8_A Programmed cell death p 31.5 29 0.0012 15.6 2.8 41 1-44 2-42 (165) 44 3ded_A Probable hemolysin; str 31.2 25 0.0011 15.9 2.5 31 49-79 45-77 (113) 45 1uhr_A SWI/SNF related, matrix 31.0 17 0.00072 16.9 1.6 55 3-58 27-84 (93) 46 2pli_A Uncharacterized protein 29.7 24 0.001 16.0 2.2 28 49-79 28-55 (91) 47 2r2z_A Hemolysin; APC85144, st 29.3 29 0.0012 15.6 2.5 27 49-78 26-52 (93) 48 3llb_A Uncharacterized protein 28.6 31 0.0013 15.4 2.6 26 50-78 20-45 (83) 49 3lae_A UPF0053 protein HI0107; 27.8 31 0.0013 15.5 2.4 26 50-78 20-45 (81) 50 2bnk_A Early protein GP16.7; D 27.3 34 0.0014 15.2 3.9 35 49-83 12-51 (67) 51 2icg_A LIN2918 protein; hypoth 26.0 34 0.0014 15.2 2.4 45 4-63 2-46 (160) 52 2rk5_A Putative hemolysin; str 25.3 37 0.0016 15.0 2.5 28 49-79 18-45 (87) 53 2p13_A CBS domain; alpha-beta 24.7 29 0.0012 15.6 1.9 29 49-78 25-53 (90) 54 2pls_A CBS domain protein; APC 24.2 29 0.0012 15.6 1.7 31 49-79 19-50 (86) 55 2o3g_A Putative protein; APC85 21.3 20 0.00084 16.5 0.5 30 49-79 27-56 (92) 56 2p3h_A Uncharacterized CBS dom 21.1 45 0.0019 14.5 2.4 26 50-78 23-48 (101) No 1 >2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=99.77 E-value=6.7e-19 Score=125.57 Aligned_cols=82 Identities=29% Similarity=0.545 Sum_probs=78.0 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 87858999999999999836999988487867454206571009999999999838834888985058899999999985 Q gi|254780534|r 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA 81 (85) Q Consensus 2 ~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~ 81 (85) |||.++|.++|++++++.+ +++++.++++++|.+|||||||++++++..+|++||++||++++.++.||+++++||.+| T Consensus 10 pmt~~eI~~~V~~iv~~~~-~i~~~~i~~d~~l~~dlg~DSl~~~elv~~iE~~fgi~i~~~~l~~~~Tv~~lv~~I~~k 88 (99) T 2dnw_A 10 PLTLEGIQDRVLYVLKLYD-KIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADK 88 (99) T ss_dssp CCCHHHHHHHHHHHHHHCT-TSCTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCSHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHC T ss_conf 8899999999999999884-999988799985688749757999999999999988996999997389999999999977 Q ss_pred HHC Q ss_conf 537 Q gi|254780534|r 82 KQT 84 (85) Q Consensus 82 ~~~ 84 (85) +.. T Consensus 89 ~~~ 91 (99) T 2dnw_A 89 KDV 91 (99) T ss_dssp CCS T ss_pred CCC T ss_conf 787 No 2 >3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} PDB: 3gzl_A* 2fq0_A* 2fq2_A* Probab=99.75 E-value=5.1e-18 Score=120.65 Aligned_cols=79 Identities=47% Similarity=0.749 Sum_probs=75.5 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 85899999999999983699998848786745420657100999999999983883488898505889999999998553 Q gi|254780534|r 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ 83 (85) Q Consensus 4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~ 83 (85) +..+++++|++|+++.+ ++++++|+++++|..|||+|||+.++++..+|++||++||++++.++.||+++++||.+|.+ T Consensus 2 ~~~~t~e~v~~iia~~l-~~~~~~i~~~~~~~~dlg~DSl~~~el~~~le~~f~i~i~~~~~~~~~Tv~~l~~~i~~~~k 80 (81) T 3gzm_A 2 SLKSTFDDIKKIISKQL-SVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNNK 80 (81) T ss_dssp CHHHHHHHHHHHHHHHH-TCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC- T ss_pred CHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHCC T ss_conf 67889999999999998-87998869998536654987588999999999998899799998738999999999998635 No 3 >2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum} Probab=99.74 E-value=1e-17 Score=118.97 Aligned_cols=82 Identities=29% Similarity=0.511 Sum_probs=76.0 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCC---HHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHH Q ss_conf 87858999999999999836999---988487867454206571009999999999838834888985058899999999 Q gi|254780534|r 2 PNANDDVFEAVKEVILSQLTSVK---EDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFI 78 (85) Q Consensus 2 ~~t~~ei~~~v~~ii~~~l~~~~---~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I 78 (85) +|+++++..+|+++|++.+. ++ ++.++++++|.+|||+|||+.++++..+|++||++||++++.++.||+++++|| T Consensus 3 ~m~~eei~~~v~eiv~~~L~-~~~~~~~~i~~~~~l~~DLG~DSl~~~el~~~le~~f~i~i~~~~~~~~~Tv~~lv~~i 81 (88) T 2l4b_A 3 SMVSEEIKAQVMESVIGCLK-LNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICRYI 81 (88) T ss_dssp SSSCHHHHHHHHHHHHHHHT-CCHHHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHHHHHTCCSHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHH T ss_conf 78899999999999999977-78532101898653888749848999999999999968998999987179999999999 Q ss_pred HHHHHC Q ss_conf 985537 Q gi|254780534|r 79 RKAKQT 84 (85) Q Consensus 79 ~~~~~~ 84 (85) .+|+.. T Consensus 82 ~~~~~~ 87 (88) T 2l4b_A 82 ASKSSD 87 (88) T ss_dssp HHHSSC T ss_pred HHHCCC T ss_conf 973318 No 4 >1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A Probab=99.74 E-value=1.4e-18 Score=123.75 Aligned_cols=80 Identities=46% Similarity=0.732 Sum_probs=75.9 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 87858999999999999836999988487867454206571009999999999838834888985058899999999985 Q gi|254780534|r 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA 81 (85) Q Consensus 2 ~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~ 81 (85) |+..+++.++|++|+++.+ ++++++|+++++|.+|||+|||+.++++..+|++||++||++++.++.||+++++||.+| T Consensus 2 p~~~~~v~~~v~~iia~~l-~~~~~~I~~~~~l~~dLg~DSl~~~el~~~le~~f~i~i~~~~l~~~~Tv~dl~~~I~~k 80 (81) T 1f80_D 2 PLGSADTLERVTKIIVDRL-GVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQNQ 80 (81) T ss_dssp ---CCHHHHHHHHHHHHHS-SCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHCC-- T ss_pred CCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHC T ss_conf 9978999999999999998-849988799986687749868789999999999988998999986399999999999876 Q ss_pred H Q ss_conf 5 Q gi|254780534|r 82 K 82 (85) Q Consensus 82 ~ 82 (85) + T Consensus 81 ~ 81 (81) T 1f80_D 81 Q 81 (81) T ss_dssp - T ss_pred C T ss_conf 5 No 5 >1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynthesis, lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 1l0h_A 2fhs_C 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A Probab=99.73 E-value=6.1e-18 Score=120.21 Aligned_cols=76 Identities=49% Similarity=0.767 Sum_probs=72.6 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 99999999999983699998848786745420657100999999999983883488898505889999999998553 Q gi|254780534|r 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ 83 (85) Q Consensus 7 ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~ 83 (85) ++.++|++||++.+ ++++++|+++++|.+|||+|||+.++++..+|++||++||++++.++.||+++++||.+|+. T Consensus 3 ~i~~~i~~ii~~~~-~~~~~~i~~~~~l~~dLg~DSl~~~el~~~ie~~f~i~i~~~~~~~~~Tv~dl~~~i~~~~A 78 (78) T 1l0i_A 3 TIEERVKKIIGEQL-GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAIDYINGHQA 78 (78) T ss_dssp CHHHHHHHHHHHHH-TCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHTCC T ss_pred HHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCC T ss_conf 69999999999998-87998869998637652887689999999999998899799998708999999999987719 No 6 >2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A* Probab=99.71 E-value=1.2e-17 Score=118.59 Aligned_cols=81 Identities=25% Similarity=0.509 Sum_probs=78.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHH Q ss_conf 98785899999999999983699998848786745420657100999999999983883488898505889999999998 Q gi|254780534|r 1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRK 80 (85) Q Consensus 1 M~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~ 80 (85) |+.+++++.+++++++++.+ ++++++|+++++|.+|||+||++.++++..+|++||++||.+++.+++||+++++||.+ T Consensus 1 Ma~t~~ei~~~l~~ii~~~l-~i~~~~i~~~~~~~~dlG~DSl~~~~l~~~ie~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 79 (82) T 2cnr_A 1 MAATQEEIVAGLAEIVNEIA-GIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILD 79 (82) T ss_dssp CCCCHHHHHHHHHHHHHHHS-CCCTTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGGGGGTCSBHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHH T ss_conf 99999999999999999998-93998879995489883998689999999999999889899998649999999999988 Q ss_pred HH Q ss_conf 55 Q gi|254780534|r 81 AK 82 (85) Q Consensus 81 ~~ 82 (85) ++ T Consensus 80 ~~ 81 (82) T 2cnr_A 80 HQ 81 (82) T ss_dssp SB T ss_pred CC T ss_conf 61 No 7 >2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.30A {Aquifex aeolicus VF5} PDB: 2eht_A Probab=99.70 E-value=4.3e-17 Score=115.44 Aligned_cols=74 Identities=51% Similarity=0.856 Sum_probs=70.8 Q ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH Q ss_conf 999999999998369999884878674542065710099999999998388348889850588999999999855 Q gi|254780534|r 8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK 82 (85) Q Consensus 8 i~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~ 82 (85) |.++|++|+++.+ ++++++++++++|.+|||||||+.++++..+|++||++||++++.++.||+++++||+++. T Consensus 2 I~e~v~~ii~~~~-~~~~~~i~~~~~l~~dLg~DSl~~~el~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~l 75 (77) T 2ehs_A 2 LEERVKEIIAEQL-GVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQTVGDVINYLKEKV 75 (77) T ss_dssp HHHHHHHHHHHHH-CCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH T ss_conf 8999999999998-8599887999867877399768999999999999889869999971899999999999870 No 8 >1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis H37RV} SCOP: a.28.1.1 Probab=99.70 E-value=5.4e-17 Score=114.90 Aligned_cols=83 Identities=28% Similarity=0.564 Sum_probs=78.9 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHH Q ss_conf 98785899999999999983699998848786745420657100999999999983883488898505889999999998 Q gi|254780534|r 1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRK 80 (85) Q Consensus 1 M~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~ 80 (85) |+++++++.++|++++++.+ ++++++|.++++|.+|||+||+..++++..++++||++||...+.++.||+++++||.+ T Consensus 1 m~~t~~ei~~~l~~iia~~l-~~~~~~i~~~~~~~~dlG~DSl~~~~l~~~l~~~fgi~i~~~~~~~~~Tv~~l~~~i~~ 79 (115) T 1klp_A 1 MPVTQEEIIAGIAEIIEEVT-GIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQK 79 (115) T ss_dssp CCCCHHHHHHHHHHHHHHHT-CCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHH T ss_pred CCCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHH T ss_conf 99899999999999999997-94998879874636653987189999999999986874389999649999999999998 Q ss_pred HHHC Q ss_conf 5537 Q gi|254780534|r 81 AKQT 84 (85) Q Consensus 81 ~~~~ 84 (85) ..+. T Consensus 80 ~~~~ 83 (115) T 1klp_A 80 LEEE 83 (115) T ss_dssp HHSS T ss_pred HHCC T ss_conf 7157 No 9 >2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi} Probab=99.69 E-value=6.4e-17 Score=114.47 Aligned_cols=81 Identities=47% Similarity=0.746 Sum_probs=77.1 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 87858999999999999836999988487867454206571009999999999838834888985058899999999985 Q gi|254780534|r 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA 81 (85) Q Consensus 2 ~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~ 81 (85) .|+++++.++|++|+++.+ +++++++.++++|.++||+||++.++++..+|++||++||.+++.++.||+++++||.+| T Consensus 4 ~m~~~ei~~~v~~ii~~~l-~~~~~~i~~~~~l~~dlg~DSl~~~~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~ 82 (84) T 2kwl_A 4 SMDNDEIFSKVRSIISEQL-DKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVNFIKKR 82 (84) T ss_dssp CSTHHHHHHHHHHHHHHHH-CCCGGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTTTGGGGCSSHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHC T ss_conf 8999999999999999997-878876687500888558638999999999999988997999997289999999999886 Q ss_pred HH Q ss_conf 53 Q gi|254780534|r 82 KQ 83 (85) Q Consensus 82 ~~ 83 (85) +. T Consensus 83 ~G 84 (84) T 2kwl_A 83 KG 84 (84) T ss_dssp HC T ss_pred CC T ss_conf 29 No 10 >2qnw_A Acyl carrier protein; malaria, SGC, structural genomics consortium, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.90A {Toxoplasma gondii RH} Probab=99.68 E-value=1.3e-16 Score=112.76 Aligned_cols=79 Identities=51% Similarity=0.770 Sum_probs=74.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH Q ss_conf 78589999999999998369999884878674542065710099999999998388348889850588999999999855 Q gi|254780534|r 3 NANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK 82 (85) Q Consensus 3 ~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~ 82 (85) ..++++.++|++++++.+ ++++++|+++++|.+|||+|||+.++++..+|++||++||.+++.+++||+++++||++|+ T Consensus 3 ~~~~~i~e~v~~iia~~l-~~~~~~i~~~~~~~~dlg~DSl~~~~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~~ 81 (82) T 2qnw_A 3 SDDRPLLERVKDVVADQL-GVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDALSYIEKAK 81 (82) T ss_dssp CCSHHHHHHHHHHHHHHH-CCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCC T ss_conf 850799999999999997-8698875853018988399778999999999999989979999974999999999998833 No 11 >1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.50A {Thermus thermophilus HB8} Probab=99.68 E-value=1.6e-16 Score=112.20 Aligned_cols=79 Identities=51% Similarity=0.784 Sum_probs=75.7 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH Q ss_conf 78589999999999998369999884878674542065710099999999998388348889850588999999999855 Q gi|254780534|r 3 NANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK 82 (85) Q Consensus 3 ~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~ 82 (85) |+++++.++|++++++.+ +++++.|.++++|.+|||+||++.++++..+|++||++||.+++.++.||+++++||.++. T Consensus 1 Mt~~ei~~~v~~ii~~~l-~i~~~~i~~~~~~~~dlG~DSl~~~~l~~~ie~~f~i~i~~~~~~~~~tv~~l~~~i~~~l 79 (80) T 1x3o_A 1 MTEQEIFEKVKAVIADKL-QVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVEYIKAKL 79 (80) T ss_dssp CCHHHHHHHHHHHHHHHH-TCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCBHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHC T ss_conf 999999999999999998-9399887999767988598589999999999999889989999874999999999999826 No 12 >3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A* Probab=99.65 E-value=1.8e-16 Score=111.97 Aligned_cols=78 Identities=49% Similarity=0.746 Sum_probs=73.1 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 5899999999999983699998848786745420657100999999999983883488898505889999999998553 Q gi|254780534|r 5 NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ 83 (85) Q Consensus 5 ~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~ 83 (85) ..++.++|++|+++.+ +++++.|+++++|.++||+||++.++++..+|++||++||.+++.++.||+++++||++|+. T Consensus 20 ms~i~e~l~~iia~~l-~i~~~~i~~d~~~~~dlG~DSl~~~~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~I~~~~A 97 (97) T 3ejb_A 20 MSTIEERVKKIIGEQL-GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA 97 (97) T ss_dssp CCCHHHHHHHHHHHHS-CCCTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHHHHC-- T ss_pred HHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCC T ss_conf 7799999999999997-88988737763578875875799999999999998899799999759999999999988619 No 13 >2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* Probab=99.65 E-value=1.4e-16 Score=112.64 Aligned_cols=80 Identities=33% Similarity=0.552 Sum_probs=75.3 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 85899999999999983699998848786745420657100999999999983883488898505889999999998553 Q gi|254780534|r 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ 83 (85) Q Consensus 4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~ 83 (85) +++++.++|++|+++.+ +++++.+.++++|.+|||+|||+.++++..+|++||++||++++.++.||+++++||.++.+ T Consensus 1 a~~ei~~~v~~ii~~~l-~~~~~~i~~~~~~~~dlG~DSl~~~el~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~~~ 79 (82) T 2ava_A 1 AKKETIDKVSDIVKEKL-ALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGLLE 79 (82) T ss_dssp CCHHHHHHHHHHHHHHT-TCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCGGGSSSCCSHHHHHHHHHHHHH T ss_pred CHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH T ss_conf 96899999999999998-93988769973289886985799999999999998899799998629999999999999987 Q ss_pred C Q ss_conf 7 Q gi|254780534|r 84 T 84 (85) Q Consensus 84 ~ 84 (85) . T Consensus 80 ~ 80 (82) T 2ava_A 80 K 80 (82) T ss_dssp H T ss_pred C T ss_conf 5 No 14 >2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2kwm_A* Probab=99.59 E-value=1.5e-15 Score=106.74 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=70.4 Q ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHC Q ss_conf 99999999999836999988487867454206571009999999999838834888985058899999999985537 Q gi|254780534|r 8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQT 84 (85) Q Consensus 8 i~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~~ 84 (85) ..+++++|+++.+ +++++.|+++++|.+++|||||+.++++..+|++||++||++++.++.||+++++||.++.++ T Consensus 3 tle~L~~I~~e~l-~~~~~~i~~~t~~~d~~g~DSL~~veli~~ie~~f~i~i~~~~~~~~~Tv~~l~~~I~~kl~~ 78 (87) T 2kci_A 3 TLDALTPIFRQVF-DDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKLAR 78 (87) T ss_dssp SHHHHHHHHHHHT-TCSCCCCCTTCCSTTCCCCCSTHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHH-CCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEECHHHHHHCCCHHHHHHHHHHHHHH T ss_conf 4999999999995-897323488778033689877899999999999959656598886069999999999999998 No 15 >2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis} Probab=99.59 E-value=1.6e-16 Score=112.30 Aligned_cols=78 Identities=54% Similarity=0.848 Sum_probs=73.0 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH Q ss_conf 8589999999999998369999884878674542065710099999999998388348889850588999999999855 Q gi|254780534|r 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK 82 (85) Q Consensus 4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~ 82 (85) +..++.++|++++++.+ ++++++|+++++|.+|||+||++.++++..+|++||+++|.+++.++.||+++++||++++ T Consensus 1 sms~i~~~v~~iia~~l-~~~~~~i~~~~~~~~dlG~DSl~~~~l~~~ie~~f~i~l~~~~~~~~~Tv~~l~~~i~~~~ 78 (79) T 2l3v_A 1 SMSDTAERVKKIVVEHL-GVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKFIDKAS 78 (79) T ss_dssp CCTHHHHHHHHHHHHHT-CCCSTTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCCCHHHHTTCSSSSTTHHHHHHTC T ss_pred CHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCC T ss_conf 97799999999999998-9499887998458988499758999999999999889989999862999999999998854 No 16 >1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.00A {Thermotoga maritima MSB8} SCOP: a.28.1.1 Probab=99.59 E-value=2.5e-15 Score=105.56 Aligned_cols=80 Identities=33% Similarity=0.544 Sum_probs=75.2 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 87858999999999999836999988487867454206571009999999999838834888985058899999999985 Q gi|254780534|r 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA 81 (85) Q Consensus 2 ~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~ 81 (85) .|+++++.++|++++++.+ +++++.+.++++| .+||+||++.++++..+|++||++||.+++.+++||+++++||.++ T Consensus 12 ~m~r~~i~~~l~~iia~~l-~i~~~~i~~~~~~-~dlG~DSl~~~el~~~le~~f~i~i~~~~l~~~~Ti~~l~~~I~~~ 89 (100) T 1vku_A 12 HMERKKLIAKFVEIASEKM-GKDLETVDEENTF-KELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKK 89 (100) T ss_dssp TTHHHHHHHHHHHHHHHTT-CCCCCSCCTTSBT-TTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCH-HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH T ss_conf 7899999999999999998-9299888999998-8868965899999999999988995999996499999999999998 Q ss_pred HH Q ss_conf 53 Q gi|254780534|r 82 KQ 83 (85) Q Consensus 82 ~~ 83 (85) .+ T Consensus 90 l~ 91 (100) T 1vku_A 90 LE 91 (100) T ss_dssp HH T ss_pred HC T ss_conf 52 No 17 >1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A Probab=99.58 E-value=5.7e-16 Score=109.13 Aligned_cols=78 Identities=14% Similarity=0.222 Sum_probs=72.7 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH--HCCCCHHHHHHHHHHH Q ss_conf 85899999999999983699998848786745420657100999999999983883488898--5058899999999985 Q gi|254780534|r 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA--NKILTVKDAVDFIRKA 81 (85) Q Consensus 4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~--~~~~Tv~dlv~~I~~~ 81 (85) ++++|.++|++++++.+ +.++..+.++++|.+++|+|||+.++++..+|++||++||.+++ .++.||+++++||+++ T Consensus 1 sde~i~~~V~~il~~~l-~~~~~~i~~d~~l~e~~glDSl~~vel~~~ie~~f~i~i~~~~l~~~~~~Tv~~i~~~i~~l 79 (80) T 1dv5_A 1 ADEAIKNGVLDILADLT-GSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQA 79 (80) T ss_dssp CCHHHHHHHHHHHHHHH-TSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHC T ss_conf 93899999999999997-85876569996887806988599999999999998898798996687568999999999973 Q ss_pred H Q ss_conf 5 Q gi|254780534|r 82 K 82 (85) Q Consensus 82 ~ 82 (85) | T Consensus 80 q 80 (80) T 1dv5_A 80 Q 80 (80) T ss_dssp C T ss_pred C T ss_conf 9 No 18 >2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopantetheine; 1.83A {Mycobacterium tuberculosis} Probab=99.55 E-value=6e-15 Score=103.43 Aligned_cols=77 Identities=25% Similarity=0.333 Sum_probs=70.2 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH Q ss_conf 8589999999999998369999884878674542065710099999999998388348889850588999999999855 Q gi|254780534|r 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK 82 (85) Q Consensus 4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~ 82 (85) ++..+.++++.++++.+ +.+. .++++++|.+|||+|||+.++++..+|++||+++|++++.++.||+++++||.++. T Consensus 23 ~~~~i~e~l~~ii~~vl-~~d~-~i~~d~~l~~DLGlDSL~~vel~~~ie~~fgi~i~~~~~~~~~Tv~dl~~~I~~~~ 99 (113) T 2cgq_A 23 FQGAMEEAINATIQRIL-RTDR-GITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYTSVAVWF 99 (113) T ss_dssp ---CHHHHHHHHHHHHH-TCCS-CCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCBHHHHHHHHHTTC T ss_pred CHHHHHHHHHHHHHHHH-CCCC-CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHC T ss_conf 46899999999999996-7776-76887124876486579999999999999889979999973899999999999865 No 19 >2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 3lmo_A Probab=99.54 E-value=1.6e-15 Score=106.61 Aligned_cols=74 Identities=20% Similarity=0.374 Sum_probs=68.5 Q ss_pred HHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 999999999999836999988487867454206571009999999999838834888985058899999999985 Q gi|254780534|r 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA 81 (85) Q Consensus 7 ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~ 81 (85) +++++|++|+++.+ ++++++|+++++|.+|||+|||+.++++..+|++||++||.+++.++.||++++.++... T Consensus 3 ~t~e~v~~Iia~~l-~~~~~~I~~d~~l~~dLG~DSl~~vel~~~le~~f~i~i~~~~~~~~~Tv~~l~~~~~~~ 76 (101) T 2kw2_A 3 STFDRVATIIAETC-DIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFV 76 (101) T ss_dssp CHHHHHHHHHHHHH-CCCGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSSCHHHHHB T ss_pred HHHHHHHHHHHHHH-CCCHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH T ss_conf 89999999999997-878876687503898728757899999999999988997999987289999999999999 No 20 >3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma} Probab=99.53 E-value=1.8e-14 Score=100.69 Aligned_cols=80 Identities=26% Similarity=0.358 Sum_probs=67.5 Q ss_pred HHHHHHHHHHHHHHHH---CCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 5899999999999983---6999988487867454206571009999999999838834888985058899999999985 Q gi|254780534|r 5 NDDVFEAVKEVILSQL---TSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA 81 (85) Q Consensus 5 ~~ei~~~v~~ii~~~l---~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~ 81 (85) .+.+.+++..++.+.+ .+++|+.+.+++++.+|||+|||+.+||+..+|++||++||++++.++.||+++++||.++ T Consensus 17 ~~~i~~~i~~~i~~il~~~~~i~p~~~~~~~~~~~DLG~DSL~~~el~~~le~~f~i~i~~~~~~~~~TV~dl~~~i~~k 96 (107) T 3ce7_A 17 INAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIADFVVSE 96 (107) T ss_dssp HHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH T ss_conf 58899999999999987750789011044210256408766999999999999978998989973469899999999984 Q ss_pred HHC Q ss_conf 537 Q gi|254780534|r 82 KQT 84 (85) Q Consensus 82 ~~~ 84 (85) ... T Consensus 97 ~a~ 99 (107) T 3ce7_A 97 RAK 99 (107) T ss_dssp HHS T ss_pred HHC T ss_conf 621 No 21 >2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} Probab=99.44 E-value=1e-13 Score=96.56 Aligned_cols=76 Identities=18% Similarity=0.318 Sum_probs=65.8 Q ss_pred HHHHHHHHHHHHHCC-CCHHHCCCCCCHH-HHCCCCHHHHHHHHHHHHHHHCCCCCHHHH--HCCCCHHHHHHHHHHHHH Q ss_conf 999999999998369-9998848786745-420657100999999999983883488898--505889999999998553 Q gi|254780534|r 8 VFEAVKEVILSQLTS-VKEDQIVESARFI-EELGADSLDVVELVMIFEEKFSLEIPEESA--NKILTVKDAVDFIRKAKQ 83 (85) Q Consensus 8 i~~~v~~ii~~~l~~-~~~~~i~~ds~l~-~dLg~DSLd~vel~~~lE~~f~i~i~~~~~--~~~~Tv~dlv~~I~~~~~ 83 (85) ..++|+++|++.+.. .+++.+.++++|. ++||+|||+.+++++.+|++||++||++++ +++.||+.+++||++|.. T Consensus 3 ~~e~vr~~i~e~l~l~~~~~~l~~d~~L~~~~lglDSl~~vel~~~lE~~fgi~i~d~dl~~~~f~tv~~l~~~v~~klA 82 (83) T 2amw_A 3 HLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLALFVEHKLS 82 (83) T ss_dssp THHHHHHHHHHHTTCGGGGGSCCTTSCSTTTSTTTTHHHHHHHHHHHHHHTTCCCCTTTCCGGGSSSHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHCCCHHHHHHHHHHHHC T ss_conf 49999999999808888723368985222367698808999999999999498268122008756899999999999853 No 22 >2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1 Probab=99.44 E-value=3.1e-13 Score=93.84 Aligned_cols=81 Identities=20% Similarity=0.313 Sum_probs=71.3 Q ss_pred CCHHHHHHHHHHHHHHHHC-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHH--CCCCHHHHHHHHH Q ss_conf 7858999999999999836-999988487867454206571009999999999838834888985--0588999999999 Q gi|254780534|r 3 NANDDVFEAVKEVILSQLT-SVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN--KILTVKDAVDFIR 79 (85) Q Consensus 3 ~t~~ei~~~v~~ii~~~l~-~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~--~~~Tv~dlv~~I~ 79 (85) .....+.++|++++++.+. .+++++|.++++|. |||+|||+.++++..+|++||++||++++. .+.||+++++||. T Consensus 18 ~~~~~v~e~i~~ila~~l~l~~~~e~i~~d~~l~-dlGlDSL~~vel~~~ie~~fgi~i~~~~l~~~~~~ti~~La~~V~ 96 (105) T 2jq4_A 18 YFQGHMNATIREILAKFGQLPTPVDTIADEADLY-AAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVK 96 (105) T ss_dssp -----CHHHHHHHHHHTSCCSSCGGGCCTTSCGG-GGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH T ss_conf 8999999999999999866899998869999888-818858999999999999979846899984875278999999999 Q ss_pred HHHHC Q ss_conf 85537 Q gi|254780534|r 80 KAKQT 84 (85) Q Consensus 80 ~~~~~ 84 (85) +.++. T Consensus 97 ~~~~~ 101 (105) T 2jq4_A 97 LILDG 101 (105) T ss_dssp HHHHT T ss_pred HHHCC T ss_conf 98826 No 23 >1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1 Probab=99.40 E-value=3e-13 Score=93.94 Aligned_cols=80 Identities=19% Similarity=0.272 Sum_probs=73.0 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 87858999999999999836999988487867454206571009999999999838834888985058899999999985 Q gi|254780534|r 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA 81 (85) Q Consensus 2 ~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~ 81 (85) .+|.+++.+.+++++.+. .+++++.+.++++|. +||+|||+.++++..++++||++||.+.+.++.|++++++||.++ T Consensus 3 ~~t~~~l~~~lr~~~~~~-~~vd~~~i~~d~~~~-dlG~DSl~~~~l~~~l~~~~gi~l~~~~~~~~~Ti~~l~~~v~~~ 80 (95) T 1nq4_A 3 LLTLSDLLTLLRECAGEE-ESIDLGGDVEDVAFD-ALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNAS 80 (95) T ss_dssp CCCHHHHHHHHHHHHTCS-STTCSCSCCSSSCHH-HHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHH-HCCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH T ss_conf 578999999999999888-388820078998998-939978999999999999998986899997599999999999976 Q ss_pred HH Q ss_conf 53 Q gi|254780534|r 82 KQ 83 (85) Q Consensus 82 ~~ 83 (85) .. T Consensus 81 l~ 82 (95) T 1nq4_A 81 LT 82 (95) T ss_dssp HH T ss_pred CC T ss_conf 45 No 24 >1af8_A Actinorhodin polyketide synthase acyl carrier protein; solution structure, structure, antibiotic biosynthesis; NMR {Streptomyces coelicolor A3} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A* Probab=99.32 E-value=3.6e-13 Score=93.46 Aligned_cols=79 Identities=24% Similarity=0.354 Sum_probs=66.3 Q ss_pred CCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH Q ss_conf 78589999999999998369999884878674542065710099999999998388348889850588999999999855 Q gi|254780534|r 3 NANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK 82 (85) Q Consensus 3 ~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~ 82 (85) +|.+++...+++.+.+. .+++++.+.++++|. |||+|||+.++++..+|++||++||...+.++.|++++++||.++. T Consensus 5 ~t~e~l~~il~e~~~~~-~~~~~~~i~~d~~f~-dlG~DSl~~~el~~~le~~~gv~l~~~~~~~~~Tv~~l~~~v~~~l 82 (86) T 1af8_A 5 LTTDDLRRALVECAGET-DGTDLSGDFLDLRFE-DIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGAL 82 (86) T ss_dssp SCHHHHHHHHHTTCCCC-SCCCTTTCSSTTSTT-TTTCCTTTHHHHHHHHTTTTCSCCCTTTTTTCCSHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH T ss_conf 14999999999997641-277832144687899-9199889999999999999989858999966999999999998765 Q ss_pred H Q ss_conf 3 Q gi|254780534|r 83 Q 83 (85) Q Consensus 83 ~ 83 (85) . T Consensus 83 a 83 (86) T 1af8_A 83 A 83 (86) T ss_dssp H T ss_pred H T ss_conf 4 No 25 >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein family, structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A Probab=99.31 E-value=7e-12 Score=86.23 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=73.1 Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH Q ss_conf 87858999999999999836999988487867454206571009999999999838834888985058899999999985 Q gi|254780534|r 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA 81 (85) Q Consensus 2 ~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~ 81 (85) |.+.+++.+++++++++.+ ++++++|.++.+|. ++|+||+..+++...++++||+++|...+.++.|++++++|+.+. T Consensus 9 p~s~e~i~~~L~~~va~~l-~~~~~~I~~~~~~~-~lG~DSl~~~~l~~~l~~~~g~~l~~~~~~~~~ti~~La~~L~e~ 86 (88) T 2afd_A 9 PASVEDIQSWLIDQFAQQL-DVDPDDIDMEESFD-NYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAKRLGEL 86 (88) T ss_dssp CSSHHHHHHHHHHHHHHHH-TSCGGGCCTTSCGG-GTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHHHHHHHHHHH T ss_pred CCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH T ss_conf 9999999999999999998-93998879999998-959869999999999999988998899998499999999999986 No 26 >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} Probab=99.25 E-value=7.4e-12 Score=86.11 Aligned_cols=79 Identities=19% Similarity=0.354 Sum_probs=71.2 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCH--HHHHCCCCHHHHHHHHHHH Q ss_conf 85899999999999983699998848786745420657100999999999983883488--8985058899999999985 Q gi|254780534|r 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPE--ESANKILTVKDAVDFIRKA 81 (85) Q Consensus 4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~--~~~~~~~Tv~dlv~~I~~~ 81 (85) ..+++.++|++++++.+ ++++++|.++++|. +||+||+..+++...++++||+++|. ..+.++.|++++++|+... T Consensus 8 ~~~~~~~~v~~iia~~l-gi~~~~i~~~~~f~-~lGlDSl~~~~l~~~l~~~~~~~l~~~~s~~~e~pTi~~L~~~l~~~ 85 (89) T 2kr5_A 8 VSNEKLDAVMRVVSEES-GIALEELTDDSNFA-DMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFMLGS 85 (89) T ss_dssp CCHHHHHHHHHHHHHHH-CCCGGGCCTTCBHH-HHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHHHHHHHTT T ss_pred CCHHHHHHHHHHHHHHH-CCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHC T ss_conf 85799999999999998-93998869998999-92997799999999999998998894564775089899999998646 Q ss_pred HHC Q ss_conf 537 Q gi|254780534|r 82 KQT 84 (85) Q Consensus 82 ~~~ 84 (85) .++ T Consensus 86 ~~a 88 (89) T 2kr5_A 86 GDA 88 (89) T ss_dssp TCC T ss_pred CCC T ss_conf 789 No 27 >1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1 Probab=99.13 E-value=2.7e-11 Score=82.98 Aligned_cols=73 Identities=19% Similarity=0.395 Sum_probs=60.0 Q ss_pred HHHHHHHHHHHC---CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHC Q ss_conf 999999999836---999988487867454206571009999999999838834888985058899999999985537 Q gi|254780534|r 10 EAVKEVILSQLT---SVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQT 84 (85) Q Consensus 10 ~~v~~ii~~~l~---~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~~ 84 (85) +.+++++++.+. +.++ .+.++++|. ++|+|||..++++..+|++||+++|.+.+.++.|++++++||.++..+ T Consensus 7 e~l~~il~e~~g~~~~~~~-~~d~d~~f~-dlG~DSl~~~~l~~~ie~~~g~~l~~~~~~~~~Tv~~l~~~i~~~~a~ 82 (83) T 1or5_A 7 DDLKKLLAETAGEDDSVDL-AGELDTPFV-DLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTPAT 82 (83) T ss_dssp HHHHHHHHHHSCCCSSCCG-GGCSSSCHH-HHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTCCSC T ss_pred HHHHHHHHHHHCCCCCCCC-CCCCCCCHH-HCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCCCC T ss_conf 9999999999787756677-777787988-819968999999999999998985999997399999999998546779 No 28 >2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A Probab=99.09 E-value=2.4e-10 Score=77.69 Aligned_cols=76 Identities=18% Similarity=0.253 Sum_probs=67.0 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH Q ss_conf 89999999999998369999884878674542065710099999999998388348889850588999999999855 Q gi|254780534|r 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK 82 (85) Q Consensus 6 ~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~ 82 (85) ..+.+.|+++++..+...+++.|.++.+|. ++|+|||..+++...+++.||+++|...+.++.||++++.||.+.. T Consensus 19 ~~l~~~vr~~~a~vL~~~~~~~i~~d~~f~-~lGlDSl~~~~l~~~l~~~lg~~l~~~~l~~~pTi~~La~~l~~~L 94 (95) T 2ju1_A 19 AELVRLVRTSTATVLGHDDPKAVRATTPFK-ELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAGFLDAEL 94 (95) T ss_dssp HHHHHHHHHHHHHHTTCCCGGGCCSSSCHH-HHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHC T ss_conf 999999999999996899775679999988-8398789999999999999899857999982999999999999874 No 29 >1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1 Probab=99.09 E-value=3.4e-12 Score=88.02 Aligned_cols=76 Identities=18% Similarity=0.279 Sum_probs=68.2 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 899999999999983699998848786745420657100999999999983883488898505889999999998553 Q gi|254780534|r 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ 83 (85) Q Consensus 6 ~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~ 83 (85) ..+.+++++++++.+ ++++++|.++++|. |+|+||+..++++..++++||+++|...+.++.|++++++||...+. T Consensus 11 s~i~~~l~~~~ae~l-~i~~~~i~~~~~f~-dlG~DSl~~~~l~~~l~~~~gi~l~~~~~~~~~ti~~la~~v~~~~~ 86 (92) T 1fh1_A 11 SAINKLVKAENGERT-SVALGEITTDTELT-SLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVVEAVRG 86 (92) T ss_dssp HHHHHHC------------------------------CTTTTHHHHHHHC-----------------CTTTSTHHHHC T ss_pred HHHHHHHHHHHHHHH-CCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHH T ss_conf 999999999999996-98998879999888-83886499999999999998898887898735999999999999998 No 30 >1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A Probab=98.90 E-value=4.5e-09 Score=70.53 Aligned_cols=74 Identities=18% Similarity=0.277 Sum_probs=66.5 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH Q ss_conf 589999999999998369999884878674542065710099999999998388348889850588999999999855 Q gi|254780534|r 5 NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK 82 (85) Q Consensus 5 ~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~ 82 (85) ..+++.++.++.++.+ +.+ .+.++.+|. ++|.|||..+.++..++++||+.+|-.++.+..||+++++||..+- T Consensus 12 ~~~~E~~l~~i~~~vL-~~~--~i~~~~~Ff-~lGgdSL~a~~l~~~i~~~~~~~l~~~~lf~~pTi~~LA~~i~~rs 85 (91) T 1dny_A 12 TNAVESKLAEIWERVL-GVS--GIGILDNFF-QIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATRS 85 (91) T ss_dssp SSHHHHHHHHHHHHHH-TCS--SCCSSCCTT-SSCCSSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHHHHHHHC-- T ss_pred CCHHHHHHHHHHHHHC-CCC--CCCCCCCHH-HCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCC T ss_conf 8999999999999984-999--889998978-8289589999999999999889978999985998999999999816 No 31 >2cg5_B Fatty acid synthase; transferase/hydrolase, transferase/hydrolase (complex), fatty acid biosynthesis, phosphopantetheine transferase, FAsn, ACP; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A Probab=98.79 E-value=4.7e-09 Score=70.43 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=64.7 Q ss_pred HHHHHHHHHHHHHHHCCC-CHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 899999999999983699-998848786745420657100999999999983883488898505889999999998553 Q gi|254780534|r 6 DDVFEAVKEVILSQLTSV-KEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ 83 (85) Q Consensus 6 ~ei~~~v~~ii~~~l~~~-~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~ 83 (85) .+...+|.+++++.+ ++ +++.|.++.+|. +||+|||..+++...++++||+++|..++.+ .|+..+.+++....+ T Consensus 5 ~d~~~~l~~~~a~vL-g~~~~~~i~~~~~f~-~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~-~T~~~La~l~~~~~~ 80 (91) T 2cg5_B 5 RDSQRDLVEAVAHIL-GIRDLAAVNLDSSLA-DLGLDALMSVEVRQTLERELNLVLSVREVRQ-LTLRKLQELSSKADE 80 (91) T ss_dssp ---CTTHHHHHHHHT-TCCSCTTSCTTSBTT-TTTCCHHHHHHHHHHHHHHHCCCCCHHHHHT-CBHHHHHHHHHCC-- T ss_pred CHHHHHHHHHHHHHH-CCCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHH-CCHHHHHHHHHCCCC T ss_conf 289999999999991-899876769998889-9577679999999999999889877999972-039999999853256 No 32 >2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=98.63 E-value=1.4e-07 Score=62.14 Aligned_cols=77 Identities=29% Similarity=0.294 Sum_probs=66.6 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-CCCCHHHHHCCCCHHHHHHHHHHHH Q ss_conf 858999999999999836999988487867454206571009999999999838-8348889850588999999999855 Q gi|254780534|r 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFS-LEIPEESANKILTVKDAVDFIRKAK 82 (85) Q Consensus 4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~-i~i~~~~~~~~~Tv~dlv~~I~~~~ 82 (85) ....+.++|+.+.++.+. . +..|.++++|+ +||.|||..+.++..+.++|+ ++++-.++....|+++++.+|.++. T Consensus 22 ~e~~~e~~l~~iw~~vL~-~-~~~i~~~~~FF-~lGGdSL~a~~l~~~ir~~~~~~~l~~~dlf~~pTl~~la~~i~~~~ 98 (110) T 2cq8_A 22 AELVTAEAVRSVWQRILP-K-VLEVEDSTDFF-KSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKL 98 (110) T ss_dssp THHHHHHHHHHHHHHHCS-S-CSCCCTTCBHH-HHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHCC-C-CCCCCCCCCHH-HCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHH T ss_conf 627999999999999838-9-87789998878-74896999999999999984897115999884877999999999983 Q ss_pred H Q ss_conf 3 Q gi|254780534|r 83 Q 83 (85) Q Consensus 83 ~ 83 (85) + T Consensus 99 ~ 99 (110) T 2cq8_A 99 R 99 (110) T ss_dssp H T ss_pred C T ss_conf 3 No 33 >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensation domain, peptide bond formation, ligase, antibiotics; 1.85A {Brevibacillus brevis} Probab=98.61 E-value=1.4e-07 Score=62.24 Aligned_cols=75 Identities=19% Similarity=0.277 Sum_probs=66.3 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHC Q ss_conf 8999999999999836999988487867454206571009999999999838834888985058899999999985537 Q gi|254780534|r 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQT 84 (85) Q Consensus 6 ~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~~ 84 (85) .+.+.++.+|.++.+ +++ .|..+.+|. +||.|||..+.++..+.+++|++|+-.++.+..|+++++.++.+..+. T Consensus 9 t~~E~~l~~iw~~vL-~~~--~i~~~d~Ff-~lGgDSi~Ai~l~~~l~~~~g~~i~~~di~~~~ti~~la~~~~~~~~~ 83 (520) T 2jgp_A 9 SVWEARLAQVWEQVL-NVP--QVGALDDFF-ALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAAFIEETAKG 83 (520) T ss_dssp SHHHHHHHHHHHHHH-TCS--CCCTTCBTT-TTTCCHHHHHHHHHHHHHHHCBCCCHHHHHHSCBHHHHHHHHHHCCTT T ss_pred CHHHHHHHHHHHHHC-CCC--CCCCCCCHH-HHCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHCCC T ss_conf 999999999999983-999--979999967-741779999999999998659977899996699599999998863668 No 34 >2roq_A Enterobactin synthetase component F; T-TE, PCP, thioesterase, peptidyl carrier protein, thiolation domain, non-ribosomal peptide synthetase; NMR {Escherichia coli} Probab=98.39 E-value=2.5e-07 Score=60.77 Aligned_cols=73 Identities=15% Similarity=0.153 Sum_probs=64.0 Q ss_pred HHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH Q ss_conf 89999999999998369999884878674542065710099999999998388348889850588999999999855 Q gi|254780534|r 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK 82 (85) Q Consensus 6 ~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~ 82 (85) .+++.++.+|.++.+ +++ .+..+.+|. +||.|||..++++..++++||++++-.++.+..||++++.++.... T Consensus 16 ~~~E~~l~~iw~~vL-g~~--~ig~~d~Ff-~lGgdSL~a~~l~~~i~~~~g~~l~~~~l~~~pTv~~La~~~~~~~ 88 (343) T 2roq_A 16 AGSETIIAAAFSSLL-GCD--VQDADADFF-ALGGHALLAMKLAAQLSRQVARQVTPGQVMVASTVAKLATIIDAEE 88 (343) T ss_dssp SSHHHHHHHHHHHHT-TSS--CCCSSCCHH-HHTCCTTHHHHHHHHHHHHSSSCCCTTSSSSSSCHHHHHHHHTTCC T ss_pred CHHHHHHHHHHHHHH-CCC--CCCCCCCHH-HCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHCCC T ss_conf 999999999999983-889--779999936-6686699999999999998599746536402776999998751010 No 35 >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, termination module, phosphopantetheine; 2.6A {Bacillus subtilis} Probab=98.16 E-value=1.7e-06 Score=56.06 Aligned_cols=75 Identities=15% Similarity=0.283 Sum_probs=66.3 Q ss_pred HHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 5899999999999983699998848786745420657100999999999983883488898505889999999998553 Q gi|254780534|r 5 NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ 83 (85) Q Consensus 5 ~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~ 83 (85) ..+++.++.+|.++.+. .+ .|..+.+|+ +||.|||..+.++..++++||++++-.++.+..||++++.+|.+... T Consensus 970 ~~~~E~~l~~iw~~vL~-~~--~v~~~d~FF-~lGGdSL~ai~l~~~l~~~~g~~l~~~~lf~~pTi~~La~~l~~~~~ 1044 (1304) T 2vsq_A 970 RNEMEETIAQIWSEVLG-RK--QIGIHDDFF-ALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGGS 1044 (1304) T ss_dssp SSHHHHHHHHHHHHHHT-CS--CCCTTCCTT-TTTCCHHHHHHHHHHSSSTTSCCCCSSCTTTCCSHHHHHHHHHHTTS T ss_pred CCCCCCHHHHHHHHHCC-CC--CCCCCCCHH-HCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCC T ss_conf 98321038999998729-99--768889836-54870799999999999987899789999729989999999973588 No 36 >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Probab=97.62 E-value=6.2e-06 Score=52.93 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=52.7 Q ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHH Q ss_conf 999999999998369999884878674542065710099999999998388348889850588999999999 Q gi|254780534|r 8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIR 79 (85) Q Consensus 8 i~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~ 79 (85) ....+++.++..+...+++.|.++..|. +||+|||..+||...++++||+.+|..++..+ |+..+.++.. T Consensus 2124 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~-~~G~DSl~a~el~~~l~~~~~~~l~~~~~~~~-~~~~l~~l~~ 2193 (2512) T 2vz8_A 2124 SQKDLVKAVAHILGIRDVASINPDSTLV-DLGLDSLMGVEVRQILEREHDLVLSMREVRQL-SLRKLQELSS 2193 (2512) T ss_dssp ------------------------------------------------------------------------ T ss_pred HHHHHHHHHHHHHCCCCHHHCCCCCCHH-HCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHHHHHH T ss_conf 7999999999984899866779998968-81853689999999999997897179998763-0999999996 No 37 >2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli} Probab=96.17 E-value=0.0062 Score=36.13 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=56.5 Q ss_pred HHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH Q ss_conf 99999999983699998848786745420657100999999999983883488898505889999999998553 Q gi|254780534|r 10 EAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ 83 (85) Q Consensus 10 ~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~ 83 (85) +.+++.++. +. .++.++.+|.+|. ++|+||+.+|.|+...-. -|++++-.++.+-.|++.-...++++.+ T Consensus 218 ~~~~~~~~~-~~-~~~~~~~~~~nl~-~~glds~r~m~l~~~wr~-~g~~~~f~~l~~~ptl~~w~~ll~~~~~ 287 (287) T 2fq1_A 218 AALREVILP-LL-DESDEPFDDDNLI-DYGLDSVRMMALAARWRK-VHGDIDFVMLAKNPTIDAWWKLLSREVK 287 (287) T ss_dssp HHHHHHHGG-GC-CCSSCCCTTSCSG-GGTCCTTHHHHHHHHHTT-TCTTCCHHHHHTSCSHHHHHHHHHCC-- T ss_pred CHHHHHHHH-HH-CCCCCCCCCCCHH-HHCCCHHHHHHHHHHHHH-CCCCCCHHHHHHCCCHHHHHHHHHHHCC T ss_conf 226899998-74-5765558971078-727339999999999998-5998639998756689999999888629 No 38 >1rqt_A L8, 50S ribosomal protein L7/L12; protein L7/L12,ribosome,; NMR {Escherichia coli} SCOP: a.108.1.1 Probab=69.88 E-value=2.1 Score=21.98 Aligned_cols=21 Identities=43% Similarity=0.670 Sum_probs=17.5 Q ss_pred CCHHHHHHHHHHHHHHHCCCC Q ss_conf 571009999999999838834 Q gi|254780534|r 40 ADSLDVVELVMIFEEKFSLEI 60 (85) Q Consensus 40 ~DSLd~vel~~~lE~~f~i~i 60 (85) .--++++|++...|++||++- T Consensus 14 mSVmdvveLisaMEeKFGVs~ 34 (37) T 1rqt_A 14 MSVMDVVELISAMEEKFGVSA 34 (37) T ss_dssp SCHHHHHHHHHHHHHHTTCCC T ss_pred HHHHHHHHHHHHHHHHHCCCC T ss_conf 329999999999999848774 No 39 >2oai_A Hemolysin; PFAM03471, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MLY; 1.80A {Xylella fastidiosa TEMECULA1} SCOP: d.145.1.4 PDB: 2r8d_A* Probab=56.63 E-value=5.7 Score=19.53 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=25.0 Q ss_pred HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHH Q ss_conf 9999998388348889850588999999999 Q gi|254780534|r 49 VMIFEEKFSLEIPEESANKILTVKDAVDFIR 79 (85) Q Consensus 49 ~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~ 79 (85) +..+++.||+.+|.++...+.|++.++-... T Consensus 28 l~dl~~~l~~~l~~~e~~~~~TlgG~v~~~l 58 (94) T 2oai_A 28 IEELREVLGAELPDGEENNYHTLAGMCISYF 58 (94) T ss_dssp HHHHHHHHTC-------CCCSBHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 9999998788998544455100999999985 No 40 >1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1 Probab=46.07 E-value=11 Score=17.90 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=18.4 Q ss_pred CCCHHHHHHHHHHHHHHHCCCCC Q ss_conf 65710099999999998388348 Q gi|254780534|r 39 GADSLDVVELVMIFEEKFSLEIP 61 (85) Q Consensus 39 g~DSLd~vel~~~lE~~f~i~i~ 61 (85) ++.-+...|++-.+|++||++-. T Consensus 12 ~ltVlEl~eLvKa~EekfGVsAa 34 (40) T 1dd4_C 12 KLTVSELAELVKKLEDKFGVTAA 34 (40) T ss_dssp TSCHHHHHHHHHHHHHHTCCCSC T ss_pred HCCHHHHHHHHHHHHHHHCCCCC T ss_conf 47499999999999998586514 No 41 >1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1 Probab=42.00 E-value=18 Score=16.77 Aligned_cols=57 Identities=12% Similarity=0.199 Sum_probs=46.5 Q ss_pred CCCHHHHHHHHHHHHHHHHC--CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCC Q ss_conf 87858999999999999836--9999884878674542065710099999999998388 Q gi|254780534|r 2 PNANDDVFEAVKEVILSQLT--SVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSL 58 (85) Q Consensus 2 ~~t~~ei~~~v~~ii~~~l~--~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i 58 (85) .+++.+|..+|-+.|.++=- .-+...|.+|..|..=+|.+.+.+.+|.-.+..+|-- T Consensus 34 ~~sR~eV~k~iw~YIK~n~Lqdp~~kr~I~~D~~L~~lfg~~~v~~f~i~kll~~H~~~ 92 (101) T 1v32_A 34 MISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKE 92 (101) T ss_dssp CCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCS T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHCCC T ss_conf 66799999999999998167885557777466899998389942688799999987488 No 42 >3gwh_A Transcriptional antiterminator (BGLG family); extended helix bundle, AB initio, structure solution, arcimboldo, phaSer, shelxe; 1.95A {Bacillus subtilis} Probab=31.91 E-value=28 Score=15.65 Aligned_cols=22 Identities=18% Similarity=0.295 Sum_probs=16.5 Q ss_pred HHHHHHHHHHHHCCCCCHHHHH Q ss_conf 9999999999838834888985 Q gi|254780534|r 45 VVELVMIFEEKFSLEIPEESAN 66 (85) Q Consensus 45 ~vel~~~lE~~f~i~i~~~~~~ 66 (85) +..+...++++||+.+|++++. T Consensus 79 a~~i~~~le~~~~~~i~~~Ei~ 100 (111) T 3gwh_A 79 AWKLIKILQQTLKKPVHEAEAV 100 (111) T ss_dssp HHHHHHHHHHHHCCCCCTHHHH T ss_pred HHHHHHHHHHHHCCCCCHHHHH T ss_conf 9999999999988999999999 No 43 >2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} Probab=31.53 E-value=29 Score=15.61 Aligned_cols=41 Identities=10% Similarity=0.276 Sum_probs=28.4 Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHH Q ss_conf 98785899999999999983699998848786745420657100 Q gi|254780534|r 1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLD 44 (85) Q Consensus 1 M~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd 44 (85) +|++.++...++..++.+++...+..++ .....+|+..+.- T Consensus 2 ~pl~~ee~kk~~~~il~EYf~~~D~~Ea---~~~l~eL~~~~~~ 42 (165) T 2rg8_A 2 LPLDERAFEKTLTPIIQEYFEHGDTNEV---AEMLRDLNLGEMK 42 (165) T ss_dssp CCSSHHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHTCSGGG T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHCCCHHH T ss_conf 9999999999999999999858999999---9999983881218 No 44 >3ded_A Probable hemolysin; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4 Probab=31.22 E-value=25 Score=15.93 Aligned_cols=31 Identities=29% Similarity=0.389 Sum_probs=23.7 Q ss_pred HHHHHHHHCCCCC--HHHHHCCCCHHHHHHHHH Q ss_conf 9999998388348--889850588999999999 Q gi|254780534|r 49 VMIFEEKFSLEIP--EESANKILTVKDAVDFIR 79 (85) Q Consensus 49 ~~~lE~~f~i~i~--~~~~~~~~Tv~dlv~~I~ 79 (85) +..+++.|++.+| ++.-.++.|++.++-... T Consensus 45 l~dl~~~l~~~lp~~~~e~~d~dTlgGlvl~~l 77 (113) T 3ded_A 45 LDRFREFFELEAPLPGEAGGNIHTLAGVMLYQL 77 (113) T ss_dssp HHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 999999879988877543577231999999986 No 45 >1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1 Probab=30.96 E-value=17 Score=16.87 Aligned_cols=55 Identities=5% Similarity=0.064 Sum_probs=44.6 Q ss_pred CCHHHHHHHHHHHHHHHHCCC---CHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCC Q ss_conf 785899999999999983699---99884878674542065710099999999998388 Q gi|254780534|r 3 NANDDVFEAVKEVILSQLTSV---KEDQIVESARFIEELGADSLDVVELVMIFEEKFSL 58 (85) Q Consensus 3 ~t~~ei~~~v~~ii~~~l~~~---~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i 58 (85) .|..+|..++-+.|.+.- .. +...|.+|..|..=+|.|.+.+.+|--.+..+|-- T Consensus 27 ~tR~~v~k~iw~YIk~n~-Lqd~~dkr~I~~D~~L~~lf~~~~~~~~~i~k~l~~Hl~p 84 (93) T 1uhr_A 27 QTRPVIIQALWQYIKTHK-LQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMP 84 (93) T ss_dssp EEHHHHHHHHHHHHHHTT-CBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEEC T ss_pred CCHHHHHHHHHHHHHHHC-CCCCCCCCEEECCHHHHHHHCCCCCCHHHHHHHHHHHCCC T ss_conf 689999999999999856-8787767878355899998189924399899999966799 No 46 >2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, protein structure initiative; 1.70A {Neisseria meningitidis MC58} SCOP: d.145.1.4 Probab=29.73 E-value=24 Score=15.99 Aligned_cols=28 Identities=18% Similarity=0.013 Sum_probs=21.7 Q ss_pred HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHH Q ss_conf 9999998388348889850588999999999 Q gi|254780534|r 49 VMIFEEKFSLEIPEESANKILTVKDAVDFIR 79 (85) Q Consensus 49 ~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~ 79 (85) +..+++.||+.+|++ ++.|++.++-... T Consensus 28 l~dl~~~~~~~l~~~---e~~Tl~G~i~~~l 55 (91) T 2pli_A 28 IEDINTFFGTEYSSE---EADTIGGLVIQEL 55 (91) T ss_dssp HHHHHHHHCCCCCCS---SCCBHHHHHHHHH T ss_pred HHHHHHHHCCCCCCC---CCHHHHHHHHHHH T ss_conf 999999869899855---3240999999985 No 47 >2r2z_A Hemolysin; APC85144, structure initiative, midwest center for structural genomics, MCSG, PSI-2, protein structure initiative; 1.20A {Enterococcus faecalis V583} SCOP: d.145.1.4 Probab=29.28 E-value=29 Score=15.56 Aligned_cols=27 Identities=15% Similarity=0.149 Sum_probs=20.8 Q ss_pred HHHHHHHHCCCCCHHHHHCCCCHHHHHHHH Q ss_conf 999999838834888985058899999999 Q gi|254780534|r 49 VMIFEEKFSLEIPEESANKILTVKDAVDFI 78 (85) Q Consensus 49 ~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I 78 (85) +..+++.||+.+|++ ++.|++.++-.. T Consensus 26 l~dl~~~~~~~l~~~---~~~TlgG~i~~~ 52 (93) T 2r2z_A 26 IDEFNEVFETDLHMS---DVDTMAGYLITA 52 (93) T ss_dssp HHHHHHHHTCCCCCT---TCCBHHHHHHHH T ss_pred HHHHHHHHCCCCCCC---CCCCHHHHHHHH T ss_conf 999999879799877---631099999998 No 48 >3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} Probab=28.65 E-value=31 Score=15.39 Aligned_cols=26 Identities=27% Similarity=0.243 Sum_probs=19.9 Q ss_pred HHHHHHHCCCCCHHHHHCCCCHHHHHHHH Q ss_conf 99999838834888985058899999999 Q gi|254780534|r 50 MIFEEKFSLEIPEESANKILTVKDAVDFI 78 (85) Q Consensus 50 ~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I 78 (85) ..+++.||+.+|++ ++.|++.++-.. T Consensus 20 ~dl~~~~~~~l~~~---~~~TlgG~i~~~ 45 (83) T 3llb_A 20 DAFNDFFGSEFSDE---EFDTVGGLVMSA 45 (83) T ss_dssp HHHHHHHCCCCCTT---TCSBHHHHHHHH T ss_pred HHHHHHHCCCCCCC---CCHHHHHHHHHH T ss_conf 99999879699976---524099999998 No 49 >3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} PDB: 2o1r_A* Probab=27.75 E-value=31 Score=15.45 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=20.4 Q ss_pred HHHHHHHCCCCCHHHHHCCCCHHHHHHHH Q ss_conf 99999838834888985058899999999 Q gi|254780534|r 50 MIFEEKFSLEIPEESANKILTVKDAVDFI 78 (85) Q Consensus 50 ~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I 78 (85) ..+++.||+.+|++ ++.|++.++-.. T Consensus 20 ~dl~~~~~~~l~~~---~~~TigG~v~~~ 45 (81) T 3lae_A 20 RDLNKMFNWELDTE---DARTFNGLILEH 45 (81) T ss_dssp HHHHHHHCCCCCCS---SCSBHHHHHHHH T ss_pred HHHHHHHCCCCCCC---CCHHHHHHHHHH T ss_conf 99999869799988---770099999998 No 50 >2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A Probab=27.26 E-value=34 Score=15.18 Aligned_cols=35 Identities=14% Similarity=0.426 Sum_probs=27.9 Q ss_pred HHHHHHHHCCCCCHHHH-----HCCCCHHHHHHHHHHHHH Q ss_conf 99999983883488898-----505889999999998553 Q gi|254780534|r 49 VMIFEEKFSLEIPEESA-----NKILTVKDAVDFIRKAKQ 83 (85) Q Consensus 49 ~~~lE~~f~i~i~~~~~-----~~~~Tv~dlv~~I~~~~~ 83 (85) +..+=++-||+||-+-+ .+++|=.++.+||+.+|. T Consensus 12 vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~ 51 (67) T 2bnk_A 12 VLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRT 51 (67) T ss_dssp HHHHHHHTTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHH T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 9989987088673899999998633119999999986576 No 51 >2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- 2, protein structure initiative, joint center for structural genomics, JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1 Probab=26.00 E-value=34 Score=15.16 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=28.4 Q ss_pred CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHH Q ss_conf 858999999999999836999988487867454206571009999999999838834888 Q gi|254780534|r 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE 63 (85) Q Consensus 4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~ 63 (85) |.....++|.+++...-... ...+. ..-|-+..+|+++|+++|++ T Consensus 2 m~~~~~e~i~~~~~~~~~~~---~~~~~------------at~e~I~~~E~~LG~~LP~d 46 (160) T 2icg_A 2 MASSFLEEVDRLITLSGITF---HASGT------------GTPELIKIYQDALGNEFPET 46 (160) T ss_dssp HHHHHHHHHHHHHHHCCSCC---BCCCC------------CCHHHHHHHHHHHTCCCCHH T ss_pred CCHHHHHHHHHHHHHCCCCE---ECCCC------------CCHHHHHHHHHHHCCCCCHH T ss_conf 52789999999998406725---05999------------89999999999978988999 No 52 >2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4 Probab=25.29 E-value=37 Score=14.97 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=21.5 Q ss_pred HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHH Q ss_conf 9999998388348889850588999999999 Q gi|254780534|r 49 VMIFEEKFSLEIPEESANKILTVKDAVDFIR 79 (85) Q Consensus 49 ~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~ 79 (85) +-.+++.||+.+|++ ++.|++.++-... T Consensus 18 l~dl~~~~~~~l~~~---~~dTl~G~i~~~l 45 (87) T 2rk5_A 18 LNDFNEYFETDLESD---NVDTIAGFYLTGV 45 (87) T ss_dssp HHHHHHHHTCCCCCT---TCCBHHHHHHHHH T ss_pred HHHHHHHHCCCCCCC---CCEEHHHHHHHHH T ss_conf 999999879799987---7502999999986 No 53 >2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4 Probab=24.75 E-value=29 Score=15.55 Aligned_cols=29 Identities=7% Similarity=0.103 Sum_probs=21.6 Q ss_pred HHHHHHHHCCCCCHHHHHCCCCHHHHHHHH Q ss_conf 999999838834888985058899999999 Q gi|254780534|r 49 VMIFEEKFSLEIPEESANKILTVKDAVDFI 78 (85) Q Consensus 49 ~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I 78 (85) +..+++.||+.+|++. .++.|++.++-.. T Consensus 25 l~dl~~~~~~~l~~e~-~~~~Tl~G~i~~~ 53 (90) T 2p13_A 25 IRKASNLLEHDLVDEA-ERYSTLGGYLLWQ 53 (90) T ss_dssp HHHHHHHHTSCCCCTT-CCCCBHHHHHHHH T ss_pred HHHHHHHHCCCCCCCC-CCCCCHHHHHHHH T ss_conf 9999998787999866-6750299999998 No 54 >2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, structural genomics PSI-2, protein structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4 Probab=24.16 E-value=29 Score=15.60 Aligned_cols=31 Identities=13% Similarity=0.170 Sum_probs=22.8 Q ss_pred HHHHHHHHCCCCCHH-HHHCCCCHHHHHHHHH Q ss_conf 999999838834888-9850588999999999 Q gi|254780534|r 49 VMIFEEKFSLEIPEE-SANKILTVKDAVDFIR 79 (85) Q Consensus 49 ~~~lE~~f~i~i~~~-~~~~~~Tv~dlv~~I~ 79 (85) +..+++.||+.+|++ +-..+.|++.++-... T Consensus 19 l~dl~~~l~~~~~~~~~~~~~~Tl~G~v~~~l 50 (86) T 2pls_A 19 VPELKDTLGLRAVPEEEKGVYHTLSGMIMWLL 50 (86) T ss_dssp HHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 99999987889986122567543999999976 No 55 >2o3g_A Putative protein; APC85631.1, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.55A {Neisseria meningitidis MC58} SCOP: d.145.1.4 Probab=21.34 E-value=20 Score=16.47 Aligned_cols=30 Identities=17% Similarity=0.089 Sum_probs=22.3 Q ss_pred HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHH Q ss_conf 9999998388348889850588999999999 Q gi|254780534|r 49 VMIFEEKFSLEIPEESANKILTVKDAVDFIR 79 (85) Q Consensus 49 ~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~ 79 (85) +..+++.||+.+|+++ .++.|++.++-... T Consensus 27 l~dl~~~l~~~l~~~~-~~~~Tl~G~i~~~l 56 (92) T 2o3g_A 27 YVELAPQLNLPQQEED-ADFHTVAGLIMEEL 56 (92) T ss_dssp HHHHTTTTTCCCCCTT-CSCSBHHHHHHHHH T ss_pred HHHHHHHHCCCCCCCC-CCCEEHHHHHHHHH T ss_conf 9999997698998645-56304899999983 No 56 >2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transport protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4 Probab=21.06 E-value=45 Score=14.49 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=20.0 Q ss_pred HHHHHHHCCCCCHHHHHCCCCHHHHHHHH Q ss_conf 99999838834888985058899999999 Q gi|254780534|r 50 MIFEEKFSLEIPEESANKILTVKDAVDFI 78 (85) Q Consensus 50 ~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I 78 (85) ..+++.||+.+|++ ++.|++.++-.. T Consensus 23 ~dl~~~l~~~l~~~---~~~Tl~G~v~~~ 48 (101) T 2p3h_A 23 DEVERAIGYELPEG---DYETISGLLFDH 48 (101) T ss_dssp HHHHHHHTSCCCCS---SCCBHHHHHHHH T ss_pred HHHHHHHCCCCCCC---CCHHHHHHHHHH T ss_conf 99999878899876---711199999998 Done!