Query         gi|254780534|ref|YP_003064947.1| acyl carrier protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 85
No_of_seqs    105 out of 1696
Neff          6.9 
Searched_HMMs 23785
Date          Tue May 31 20:02:25 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780534.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2dnw_A Acyl carrier protein; A  99.8 6.7E-19 2.8E-23  125.6   7.7   82    2-84     10-91  (99)
  2 3gzm_A Acyl carrier protein; h  99.7 5.1E-18 2.1E-22  120.6   9.3   79    4-83      2-80  (81)
  3 2l4b_A Acyl carrier protein; i  99.7   1E-17 4.2E-22  119.0  10.0   82    2-84      3-87  (88)
  4 1f80_D Acyl carrier protein; t  99.7 1.4E-18 5.9E-23  123.8   5.5   80    2-82      2-81  (81)
  5 1l0i_A Acyl carrier protein; a  99.7 6.1E-18 2.5E-22  120.2   7.3   76    7-83      3-78  (78)
  6 2cnr_A FAS, ACP, acyl carrier   99.7 1.2E-17   5E-22  118.6   7.3   81    1-82      1-81  (82)
  7 2ehs_A ACP, acyl carrier prote  99.7 4.3E-17 1.8E-21  115.4   8.7   74    8-82      2-75  (77)
  8 1klp_A ACP, ACPM, meromycolate  99.7 5.4E-17 2.3E-21  114.9   9.1   83    1-84      1-83  (115)
  9 2kwl_A ACP, acyl carrier prote  99.7 6.4E-17 2.7E-21  114.5   8.5   81    2-83      4-84  (84)
 10 2qnw_A Acyl carrier protein; m  99.7 1.3E-16 5.4E-21  112.8   9.3   79    3-82      3-81  (82)
 11 1x3o_A Acyl carrier protein; s  99.7 1.6E-16 6.9E-21  112.2   9.3   79    3-82      1-79  (80)
 12 3ejb_A Acyl carrier protein; p  99.6 1.8E-16 7.5E-21  112.0   6.8   78    5-83     20-97  (97)
 13 2ava_A ACP I, acyl carrier pro  99.6 1.4E-16 5.7E-21  112.6   6.2   80    4-84      1-80  (82)
 14 2kci_A Putative acyl carrier p  99.6 1.5E-15 6.5E-20  106.7   6.9   76    8-84      3-78  (87)
 15 2l3v_A ACP, acyl carrier prote  99.6 1.6E-16 6.6E-21  112.3   1.3   78    4-82      1-78  (79)
 16 1vku_A Acyl carrier protein; T  99.6 2.5E-15 1.1E-19  105.6   7.5   80    2-83     12-91  (100)
 17 1dv5_A APO-DCP, APO-D-alanyl c  99.6 5.7E-16 2.4E-20  109.1   3.7   78    4-82      1-80  (80)
 18 2cgq_A Acyl carrier protein AC  99.6   6E-15 2.5E-19  103.4   6.9   77    4-82     23-99  (113)
 19 2kw2_A Specialized acyl carrie  99.5 1.6E-15 6.8E-20  106.6   3.3   74    7-81      3-76  (101)
 20 3ce7_A Specific mitochodrial a  99.5 1.8E-14 7.8E-19  100.7   8.0   80    5-84     17-99  (107)
 21 2amw_A Hypothetical protein NE  99.4   1E-13 4.2E-18   96.6   6.2   76    8-83      3-82  (83)
 22 2jq4_A AGR_C_4658P, hypothetic  99.4 3.1E-13 1.3E-17   93.8   8.2   81    3-84     18-101 (105)
 23 1nq4_A Oxytetracycline polyket  99.4   3E-13 1.2E-17   93.9   6.2   80    2-83      3-82  (95)
 24 1af8_A Actinorhodin polyketide  99.3 3.6E-13 1.5E-17   93.5   2.6   79    3-83      5-83  (86)
 25 2afd_A Protein ASL1650; twiste  99.3   7E-12   3E-16   86.2   8.8   78    2-81      9-86  (88)
 26 2kr5_A PKS, aflatoxin biosynth  99.2 7.4E-12 3.1E-16   86.1   6.0   79    4-84      8-88  (89)
 27 1or5_A Acyl carrier protein; A  99.1 2.7E-11 1.1E-15   83.0   4.3   73   10-84      7-82  (83)
 28 2ju1_A Erythronolide synthase;  99.1 2.4E-10 9.9E-15   77.7   7.7   76    6-82     19-94  (95)
 29 1fh1_A NODF, nodulation protei  99.1 3.4E-12 1.4E-16   88.0  -1.7   76    6-83     11-86  (92)
 30 1dny_A Non-ribosomal peptide s  98.9 4.5E-09 1.9E-13   70.5   7.9   74    5-82     12-85  (91)
 31 2cg5_B Fatty acid synthase; tr  98.8 4.7E-09   2E-13   70.4   5.1   75    6-83      5-80  (91)
 32 2cq8_A 10-formyltetrahydrofola  98.6 1.4E-07 5.9E-12   62.1   8.6   77    4-83     22-99  (110)
 33 2jgp_A Tyrocidine synthetase 3  98.6 1.4E-07 5.7E-12   62.2   8.1   75    6-84      9-83  (520)
 34 2roq_A Enterobactin synthetase  98.4 2.5E-07   1E-11   60.8   4.7   73    6-82     16-88  (343)
 35 2vsq_A Surfactin synthetase su  98.2 1.7E-06 7.2E-11   56.1   4.7   75    5-83    970-1044(1304)
 36 2vz8_A Fatty acid synthase; tr  97.6 6.2E-06 2.6E-10   52.9   0.0   70    8-79   2124-2193(2512)
 37 2fq1_A Isochorismatase; ENTB,   96.2  0.0062 2.6E-07   36.1   5.0   70   10-83    218-287 (287)
 38 1rqt_A L8, 50S ribosomal prote  69.9     2.1 8.8E-05   22.0   2.3   21   40-60     14-34  (37)
 39 2oai_A Hemolysin; PFAM03471, s  56.6     5.7 0.00024   19.5   2.5   31   49-79     28-58  (94)
 40 1dd4_C 50S ribosomal protein L  46.1      11 0.00047   17.9   2.6   23   39-61     12-34  (40)
 41 1v32_A AT5G08430, hypothetical  42.0      18 0.00075   16.8   3.1   57    2-58     34-92  (101)
 42 3gwh_A Transcriptional antiter  31.9      28  0.0012   15.6   2.9   22   45-66     79-100 (111)
 43 2rg8_A Programmed cell death p  31.5      29  0.0012   15.6   2.8   41    1-44      2-42  (165)
 44 3ded_A Probable hemolysin; str  31.2      25  0.0011   15.9   2.5   31   49-79     45-77  (113)
 45 1uhr_A SWI/SNF related, matrix  31.0      17 0.00072   16.9   1.6   55    3-58     27-84  (93)
 46 2pli_A Uncharacterized protein  29.7      24   0.001   16.0   2.2   28   49-79     28-55  (91)
 47 2r2z_A Hemolysin; APC85144, st  29.3      29  0.0012   15.6   2.5   27   49-78     26-52  (93)
 48 3llb_A Uncharacterized protein  28.6      31  0.0013   15.4   2.6   26   50-78     20-45  (83)
 49 3lae_A UPF0053 protein HI0107;  27.8      31  0.0013   15.5   2.4   26   50-78     20-45  (81)
 50 2bnk_A Early protein GP16.7; D  27.3      34  0.0014   15.2   3.9   35   49-83     12-51  (67)
 51 2icg_A LIN2918 protein; hypoth  26.0      34  0.0014   15.2   2.4   45    4-63      2-46  (160)
 52 2rk5_A Putative hemolysin; str  25.3      37  0.0016   15.0   2.5   28   49-79     18-45  (87)
 53 2p13_A CBS domain; alpha-beta   24.7      29  0.0012   15.6   1.9   29   49-78     25-53  (90)
 54 2pls_A CBS domain protein; APC  24.2      29  0.0012   15.6   1.7   31   49-79     19-50  (86)
 55 2o3g_A Putative protein; APC85  21.3      20 0.00084   16.5   0.5   30   49-79     27-56  (92)
 56 2p3h_A Uncharacterized CBS dom  21.1      45  0.0019   14.5   2.4   26   50-78     23-48  (101)

No 1  
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77  E-value=6.7e-19  Score=125.57  Aligned_cols=82  Identities=29%  Similarity=0.545  Sum_probs=78.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf             87858999999999999836999988487867454206571009999999999838834888985058899999999985
Q gi|254780534|r    2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA   81 (85)
Q Consensus         2 ~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~   81 (85)
                      |||.++|.++|++++++.+ +++++.++++++|.+|||||||++++++..+|++||++||++++.++.||+++++||.+|
T Consensus        10 pmt~~eI~~~V~~iv~~~~-~i~~~~i~~d~~l~~dlg~DSl~~~elv~~iE~~fgi~i~~~~l~~~~Tv~~lv~~I~~k   88 (99)
T 2dnw_A           10 PLTLEGIQDRVLYVLKLYD-KIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDAEKLMCPQEIVDYIADK   88 (99)
T ss_dssp             CCCHHHHHHHHHHHHHHCT-TSCTTTCCTTCCCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHTTCCSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHC
T ss_conf             8899999999999999884-999988799985688749757999999999999988996999997389999999999977


Q ss_pred             HHC
Q ss_conf             537
Q gi|254780534|r   82 KQT   84 (85)
Q Consensus        82 ~~~   84 (85)
                      +..
T Consensus        89 ~~~   91 (99)
T 2dnw_A           89 KDV   91 (99)
T ss_dssp             CCS
T ss_pred             CCC
T ss_conf             787


No 2  
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=99.75  E-value=5.1e-18  Score=120.65  Aligned_cols=79  Identities=47%  Similarity=0.749  Sum_probs=75.5

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             85899999999999983699998848786745420657100999999999983883488898505889999999998553
Q gi|254780534|r    4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ   83 (85)
Q Consensus         4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~   83 (85)
                      +..+++++|++|+++.+ ++++++|+++++|..|||+|||+.++++..+|++||++||++++.++.||+++++||.+|.+
T Consensus         2 ~~~~t~e~v~~iia~~l-~~~~~~i~~~~~~~~dlg~DSl~~~el~~~le~~f~i~i~~~~~~~~~Tv~~l~~~i~~~~k   80 (81)
T 3gzm_A            2 SLKSTFDDIKKIISKQL-SVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDALKINTVQDAIDYIEKNNK   80 (81)
T ss_dssp             CHHHHHHHHHHHHHHHH-TCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC-
T ss_pred             CHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHCC
T ss_conf             67889999999999998-87998869998536654987588999999999998899799998738999999999998635


No 3  
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=99.74  E-value=1e-17  Score=118.97  Aligned_cols=82  Identities=29%  Similarity=0.511  Sum_probs=76.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCC---HHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf             87858999999999999836999---988487867454206571009999999999838834888985058899999999
Q gi|254780534|r    2 PNANDDVFEAVKEVILSQLTSVK---EDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFI   78 (85)
Q Consensus         2 ~~t~~ei~~~v~~ii~~~l~~~~---~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I   78 (85)
                      +|+++++..+|+++|++.+. ++   ++.++++++|.+|||+|||+.++++..+|++||++||++++.++.||+++++||
T Consensus         3 ~m~~eei~~~v~eiv~~~L~-~~~~~~~~i~~~~~l~~DLG~DSl~~~el~~~le~~f~i~i~~~~~~~~~Tv~~lv~~i   81 (88)
T 2l4b_A            3 SMVSEEIKAQVMESVIGCLK-LNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISDEDAQKLETVDDICRYI   81 (88)
T ss_dssp             SSSCHHHHHHHHHHHHHHHT-CCHHHHHSCCTTSCTTTTTTCCHHHHHHHHHHHHHHTTCCCCHHHHHTCCSHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHH
T ss_conf             78899999999999999977-78532101898653888749848999999999999968998999987179999999999


Q ss_pred             HHHHHC
Q ss_conf             985537
Q gi|254780534|r   79 RKAKQT   84 (85)
Q Consensus        79 ~~~~~~   84 (85)
                      .+|+..
T Consensus        82 ~~~~~~   87 (88)
T 2l4b_A           82 ASKSSD   87 (88)
T ss_dssp             HHHSSC
T ss_pred             HHHCCC
T ss_conf             973318


No 4  
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=99.74  E-value=1.4e-18  Score=123.75  Aligned_cols=80  Identities=46%  Similarity=0.732  Sum_probs=75.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf             87858999999999999836999988487867454206571009999999999838834888985058899999999985
Q gi|254780534|r    2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA   81 (85)
Q Consensus         2 ~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~   81 (85)
                      |+..+++.++|++|+++.+ ++++++|+++++|.+|||+|||+.++++..+|++||++||++++.++.||+++++||.+|
T Consensus         2 p~~~~~v~~~v~~iia~~l-~~~~~~I~~~~~l~~dLg~DSl~~~el~~~le~~f~i~i~~~~l~~~~Tv~dl~~~I~~k   80 (81)
T 1f80_D            2 PLGSADTLERVTKIIVDRL-GVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAEKIATVGDAVNYIQNQ   80 (81)
T ss_dssp             ---CCHHHHHHHHHHHHHS-SCCSSCCCTTCBHHHHSCCCHHHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHCC--
T ss_pred             CCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHC
T ss_conf             9978999999999999998-849988799986687749868789999999999988998999986399999999999876


Q ss_pred             H
Q ss_conf             5
Q gi|254780534|r   82 K   82 (85)
Q Consensus        82 ~   82 (85)
                      +
T Consensus        81 ~   81 (81)
T 1f80_D           81 Q   81 (81)
T ss_dssp             -
T ss_pred             C
T ss_conf             5


No 5  
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynthesis, lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 1l0h_A 2fhs_C 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=99.73  E-value=6.1e-18  Score=120.21  Aligned_cols=76  Identities=49%  Similarity=0.767  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99999999999983699998848786745420657100999999999983883488898505889999999998553
Q gi|254780534|r    7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ   83 (85)
Q Consensus         7 ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~   83 (85)
                      ++.++|++||++.+ ++++++|+++++|.+|||+|||+.++++..+|++||++||++++.++.||+++++||.+|+.
T Consensus         3 ~i~~~i~~ii~~~~-~~~~~~i~~~~~l~~dLg~DSl~~~el~~~ie~~f~i~i~~~~~~~~~Tv~dl~~~i~~~~A   78 (78)
T 1l0i_A            3 TIEERVKKIIGEQL-GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKMTTVQAAIDYINGHQA   78 (78)
T ss_dssp             CHHHHHHHHHHHHH-TCCGGGCCTTCBTTTTSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCC
T ss_conf             69999999999998-87998869998637652887689999999999998899799998708999999999987719


No 6  
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} PDB: 2koo_A* 2kop_A* 2koq_A* 2kor_A* 2kos_A*
Probab=99.71  E-value=1.2e-17  Score=118.59  Aligned_cols=81  Identities=25%  Similarity=0.509  Sum_probs=78.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf             98785899999999999983699998848786745420657100999999999983883488898505889999999998
Q gi|254780534|r    1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRK   80 (85)
Q Consensus         1 M~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~   80 (85)
                      |+.+++++.+++++++++.+ ++++++|+++++|.+|||+||++.++++..+|++||++||.+++.+++||+++++||.+
T Consensus         1 Ma~t~~ei~~~l~~ii~~~l-~i~~~~i~~~~~~~~dlG~DSl~~~~l~~~ie~~fgi~i~~~~~~~~~Tv~~l~~~i~~   79 (82)
T 2cnr_A            1 MAATQEEIVAGLAEIVNEIA-GIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDVKNLKTVGDATKYILD   79 (82)
T ss_dssp             CCCCHHHHHHHHHHHHHHHS-CCCTTTCCTTSBTTTTSCCCHHHHHHHHHHHHGGGTBCCCGGGGGTCSBHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHH
T ss_conf             99999999999999999998-93998879995489883998689999999999999889899998649999999999988


Q ss_pred             HH
Q ss_conf             55
Q gi|254780534|r   81 AK   82 (85)
Q Consensus        81 ~~   82 (85)
                      ++
T Consensus        80 ~~   81 (82)
T 2cnr_A           80 HQ   81 (82)
T ss_dssp             SB
T ss_pred             CC
T ss_conf             61


No 7  
>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.30A {Aquifex aeolicus VF5} PDB: 2eht_A
Probab=99.70  E-value=4.3e-17  Score=115.44  Aligned_cols=74  Identities=51%  Similarity=0.856  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             999999999998369999884878674542065710099999999998388348889850588999999999855
Q gi|254780534|r    8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK   82 (85)
Q Consensus         8 i~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~   82 (85)
                      |.++|++|+++.+ ++++++++++++|.+|||||||+.++++..+|++||++||++++.++.||+++++||+++.
T Consensus         2 I~e~v~~ii~~~~-~~~~~~i~~~~~l~~dLg~DSl~~~el~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~l   75 (77)
T 2ehs_A            2 LEERVKEIIAEQL-GVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEKIQTVGDVINYLKEKV   75 (77)
T ss_dssp             HHHHHHHHHHHHH-CCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHTCCBHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
T ss_conf             8999999999998-8599887999867877399768999999999999889869999971899999999999870


No 8  
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis H37RV} SCOP: a.28.1.1
Probab=99.70  E-value=5.4e-17  Score=114.90  Aligned_cols=83  Identities=28%  Similarity=0.564  Sum_probs=78.9

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHH
Q ss_conf             98785899999999999983699998848786745420657100999999999983883488898505889999999998
Q gi|254780534|r    1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRK   80 (85)
Q Consensus         1 M~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~   80 (85)
                      |+++++++.++|++++++.+ ++++++|.++++|.+|||+||+..++++..++++||++||...+.++.||+++++||.+
T Consensus         1 m~~t~~ei~~~l~~iia~~l-~~~~~~i~~~~~~~~dlG~DSl~~~~l~~~l~~~fgi~i~~~~~~~~~Tv~~l~~~i~~   79 (115)
T 1klp_A            1 MPVTQEEIIAGIAEIIEEVT-GIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDLAGLRTVGDVVAYIQK   79 (115)
T ss_dssp             CCCCHHHHHHHHHHHHHHHT-CCCTTTCCTTCCTTTTTCSHHHHHHHHHHHHHHHTCCCCCHHHHTTCCSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHH
T ss_conf             99899999999999999997-94998879874636653987189999999999986874389999649999999999998


Q ss_pred             HHHC
Q ss_conf             5537
Q gi|254780534|r   81 AKQT   84 (85)
Q Consensus        81 ~~~~   84 (85)
                      ..+.
T Consensus        80 ~~~~   83 (115)
T 1klp_A           80 LEEE   83 (115)
T ss_dssp             HHSS
T ss_pred             HHCC
T ss_conf             7157


No 9  
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=99.69  E-value=6.4e-17  Score=114.47  Aligned_cols=81  Identities=47%  Similarity=0.746  Sum_probs=77.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf             87858999999999999836999988487867454206571009999999999838834888985058899999999985
Q gi|254780534|r    2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA   81 (85)
Q Consensus         2 ~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~   81 (85)
                      .|+++++.++|++|+++.+ +++++++.++++|.++||+||++.++++..+|++||++||.+++.++.||+++++||.+|
T Consensus         4 ~m~~~ei~~~v~~ii~~~l-~~~~~~i~~~~~l~~dlg~DSl~~~~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~   82 (84)
T 2kwl_A            4 SMDNDEIFSKVRSIISEQL-DKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENEANEFETVGDVVNFIKKR   82 (84)
T ss_dssp             CSTHHHHHHHHHHHHHHHH-CCCGGGCCTTTHHHHTSSSCHHHHHHHHHHHHHHHTCCTTTTGGGGCSSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHC
T ss_conf             8999999999999999997-878876687500888558638999999999999988997999997289999999999886


Q ss_pred             HH
Q ss_conf             53
Q gi|254780534|r   82 KQ   83 (85)
Q Consensus        82 ~~   83 (85)
                      +.
T Consensus        83 ~G   84 (84)
T 2kwl_A           83 KG   84 (84)
T ss_dssp             HC
T ss_pred             CC
T ss_conf             29


No 10 
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics consortium, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.90A {Toxoplasma gondii RH}
Probab=99.68  E-value=1.3e-16  Score=112.76  Aligned_cols=79  Identities=51%  Similarity=0.770  Sum_probs=74.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             78589999999999998369999884878674542065710099999999998388348889850588999999999855
Q gi|254780534|r    3 NANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK   82 (85)
Q Consensus         3 ~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~   82 (85)
                      ..++++.++|++++++.+ ++++++|+++++|.+|||+|||+.++++..+|++||++||.+++.+++||+++++||++|+
T Consensus         3 ~~~~~i~e~v~~iia~~l-~~~~~~i~~~~~~~~dlg~DSl~~~~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~~   81 (82)
T 2qnw_A            3 SDDRPLLERVKDVVADQL-GVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEASKIATVQDALSYIEKAK   81 (82)
T ss_dssp             CCSHHHHHHHHHHHHHHH-CCCGGGCCTTCBHHHHSCCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCC
T ss_conf             850799999999999997-8698875853018988399778999999999999989979999974999999999998833


No 11 
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.50A {Thermus thermophilus HB8}
Probab=99.68  E-value=1.6e-16  Score=112.20  Aligned_cols=79  Identities=51%  Similarity=0.784  Sum_probs=75.7

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             78589999999999998369999884878674542065710099999999998388348889850588999999999855
Q gi|254780534|r    3 NANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK   82 (85)
Q Consensus         3 ~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~   82 (85)
                      |+++++.++|++++++.+ +++++.|.++++|.+|||+||++.++++..+|++||++||.+++.++.||+++++||.++.
T Consensus         1 Mt~~ei~~~v~~ii~~~l-~i~~~~i~~~~~~~~dlG~DSl~~~~l~~~ie~~f~i~i~~~~~~~~~tv~~l~~~i~~~l   79 (80)
T 1x3o_A            1 MTEQEIFEKVKAVIADKL-QVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEAEKIRTVKDAVEYIKAKL   79 (80)
T ss_dssp             CCHHHHHHHHHHHHHHHH-TCCGGGCCTTCBTTTTTCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCBHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHC
T ss_conf             999999999999999998-9399887999767988598589999999999999889989999874999999999999826


No 12 
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=99.65  E-value=1.8e-16  Score=111.97  Aligned_cols=78  Identities=49%  Similarity=0.746  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             5899999999999983699998848786745420657100999999999983883488898505889999999998553
Q gi|254780534|r    5 NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ   83 (85)
Q Consensus         5 ~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~   83 (85)
                      ..++.++|++|+++.+ +++++.|+++++|.++||+||++.++++..+|++||++||.+++.++.||+++++||++|+.
T Consensus        20 ms~i~e~l~~iia~~l-~i~~~~i~~d~~~~~dlG~DSl~~~~l~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~I~~~~A   97 (97)
T 3ejb_A           20 MSTIEERVKKIIGEQL-GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA   97 (97)
T ss_dssp             CCCHHHHHHHHHHHHS-CCCTTTSCTTCBTTTTTCCCTTHHHHHHHHHHHHTTCCCCHHHHHHCCBHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCC
T ss_conf             7799999999999997-88988737763578875875799999999999998899799999759999999999988619


No 13 
>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A*
Probab=99.65  E-value=1.4e-16  Score=112.64  Aligned_cols=80  Identities=33%  Similarity=0.552  Sum_probs=75.3

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             85899999999999983699998848786745420657100999999999983883488898505889999999998553
Q gi|254780534|r    4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ   83 (85)
Q Consensus         4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~   83 (85)
                      +++++.++|++|+++.+ +++++.+.++++|.+|||+|||+.++++..+|++||++||++++.++.||+++++||.++.+
T Consensus         1 a~~ei~~~v~~ii~~~l-~~~~~~i~~~~~~~~dlG~DSl~~~el~~~ie~~f~i~i~~~~~~~~~Tv~~l~~~i~~~~~   79 (82)
T 2ava_A            1 AKKETIDKVSDIVKEKL-ALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDEDKAQDISTIQQAADVIEGLLE   79 (82)
T ss_dssp             CCHHHHHHHHHHHHHHT-TCSSSSCCCSSCCSCCCTTCCSCHHHHHHHHHHHTTCCCCGGGSSSCCSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             96899999999999998-93988769973289886985799999999999998899799998629999999999999987


Q ss_pred             C
Q ss_conf             7
Q gi|254780534|r   84 T   84 (85)
Q Consensus        84 ~   84 (85)
                      .
T Consensus        80 ~   80 (82)
T 2ava_A           80 K   80 (82)
T ss_dssp             H
T ss_pred             C
T ss_conf             5


No 14 
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* 2kwm_A*
Probab=99.59  E-value=1.5e-15  Score=106.74  Aligned_cols=76  Identities=14%  Similarity=0.201  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             99999999999836999988487867454206571009999999999838834888985058899999999985537
Q gi|254780534|r    8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQT   84 (85)
Q Consensus         8 i~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~~   84 (85)
                      ..+++++|+++.+ +++++.|+++++|.+++|||||+.++++..+|++||++||++++.++.||+++++||.++.++
T Consensus         3 tle~L~~I~~e~l-~~~~~~i~~~t~~~d~~g~DSL~~veli~~ie~~f~i~i~~~~~~~~~Tv~~l~~~I~~kl~~   78 (87)
T 2kci_A            3 TLDALTPIFRQVF-DDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQKLKNVGDLADLVDKKLAR   78 (87)
T ss_dssp             SHHHHHHHHHHHT-TCSCCCCCTTCCSTTCCCCCSTHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCEECHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf             4999999999995-897323488778033689877899999999999959656598886069999999999999998


No 15 
>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis}
Probab=99.59  E-value=1.6e-16  Score=112.30  Aligned_cols=78  Identities=54%  Similarity=0.848  Sum_probs=73.0

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             8589999999999998369999884878674542065710099999999998388348889850588999999999855
Q gi|254780534|r    4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK   82 (85)
Q Consensus         4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~   82 (85)
                      +..++.++|++++++.+ ++++++|+++++|.+|||+||++.++++..+|++||+++|.+++.++.||+++++||++++
T Consensus         1 sms~i~~~v~~iia~~l-~~~~~~i~~~~~~~~dlG~DSl~~~~l~~~ie~~f~i~l~~~~~~~~~Tv~~l~~~i~~~~   78 (79)
T 2l3v_A            1 SMSDTAERVKKIVVEHL-GVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAETILTVGDAVKFIDKAS   78 (79)
T ss_dssp             CCTHHHHHHHHHHHHHT-CCCSTTCCTTCCHHHHTCCCSSSSSSTTTTHHHHTTCCCCHHHHTTCSSSSTTHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCC
T ss_conf             97799999999999998-9499887998458988499758999999999999889989999862999999999998854


No 16 
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.00A {Thermotoga maritima MSB8} SCOP: a.28.1.1
Probab=99.59  E-value=2.5e-15  Score=105.56  Aligned_cols=80  Identities=33%  Similarity=0.544  Sum_probs=75.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf             87858999999999999836999988487867454206571009999999999838834888985058899999999985
Q gi|254780534|r    2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA   81 (85)
Q Consensus         2 ~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~   81 (85)
                      .|+++++.++|++++++.+ +++++.+.++++| .+||+||++.++++..+|++||++||.+++.+++||+++++||.++
T Consensus        12 ~m~r~~i~~~l~~iia~~l-~i~~~~i~~~~~~-~dlG~DSl~~~el~~~le~~f~i~i~~~~l~~~~Ti~~l~~~I~~~   89 (100)
T 1vku_A           12 HMERKKLIAKFVEIASEKM-GKDLETVDEENTF-KELGFDSIDVIDLVMFFEDEFALRIEDEEISKIRKVKDLIDIVIKK   89 (100)
T ss_dssp             TTHHHHHHHHHHHHHHHTT-CCCCCSCCTTSBT-TTTTCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCBHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCH-HHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf             7899999999999999998-9299888999998-8868965899999999999988995999996499999999999998


Q ss_pred             HH
Q ss_conf             53
Q gi|254780534|r   82 KQ   83 (85)
Q Consensus        82 ~~   83 (85)
                      .+
T Consensus        90 l~   91 (100)
T 1vku_A           90 LE   91 (100)
T ss_dssp             HH
T ss_pred             HC
T ss_conf             52


No 17 
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=99.58  E-value=5.7e-16  Score=109.13  Aligned_cols=78  Identities=14%  Similarity=0.222  Sum_probs=72.7

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH--HCCCCHHHHHHHHHHH
Q ss_conf             85899999999999983699998848786745420657100999999999983883488898--5058899999999985
Q gi|254780534|r    4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA--NKILTVKDAVDFIRKA   81 (85)
Q Consensus         4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~--~~~~Tv~dlv~~I~~~   81 (85)
                      ++++|.++|++++++.+ +.++..+.++++|.+++|+|||+.++++..+|++||++||.+++  .++.||+++++||+++
T Consensus         1 sde~i~~~V~~il~~~l-~~~~~~i~~d~~l~e~~glDSl~~vel~~~ie~~f~i~i~~~~l~~~~~~Tv~~i~~~i~~l   79 (80)
T 1dv5_A            1 ADEAIKNGVLDILADLT-GSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSEFDRKEWDTPNKIIAKVEQA   79 (80)
T ss_dssp             CCHHHHHHHHHHHHHHH-TSSSTTTCSSCCSSTTSSCCSHHHHHHHHHHTTTSCCCCCCSSCCTTTTTSHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHH-CCCHHHCCCCCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHC
T ss_conf             93899999999999997-85876569996887806988599999999999998898798996687568999999999973


Q ss_pred             H
Q ss_conf             5
Q gi|254780534|r   82 K   82 (85)
Q Consensus        82 ~   82 (85)
                      |
T Consensus        80 q   80 (80)
T 1dv5_A           80 Q   80 (80)
T ss_dssp             C
T ss_pred             C
T ss_conf             9


No 18 
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopantetheine; 1.83A {Mycobacterium tuberculosis}
Probab=99.55  E-value=6e-15  Score=103.43  Aligned_cols=77  Identities=25%  Similarity=0.333  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             8589999999999998369999884878674542065710099999999998388348889850588999999999855
Q gi|254780534|r    4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK   82 (85)
Q Consensus         4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~   82 (85)
                      ++..+.++++.++++.+ +.+. .++++++|.+|||+|||+.++++..+|++||+++|++++.++.||+++++||.++.
T Consensus        23 ~~~~i~e~l~~ii~~vl-~~d~-~i~~d~~l~~DLGlDSL~~vel~~~ie~~fgi~i~~~~~~~~~Tv~dl~~~I~~~~   99 (113)
T 2cgq_A           23 FQGAMEEAINATIQRIL-RTDR-GITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNIKTVGDVYTSVAVWF   99 (113)
T ss_dssp             ---CHHHHHHHHHHHHH-TCCS-CCCTTCBTTTTTCCCHHHHHHHHHHHHHHHTCCCCHHHHHHCCBHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHH-CCCC-CCCCCCHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHC
T ss_conf             46899999999999996-7776-76887124876486579999999999999889979999973899999999999865


No 19 
>2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 3lmo_A
Probab=99.54  E-value=1.6e-15  Score=106.61  Aligned_cols=74  Identities=20%  Similarity=0.374  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf             999999999999836999988487867454206571009999999999838834888985058899999999985
Q gi|254780534|r    7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA   81 (85)
Q Consensus         7 ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~   81 (85)
                      +++++|++|+++.+ ++++++|+++++|.+|||+|||+.++++..+|++||++||.+++.++.||++++.++...
T Consensus         3 ~t~e~v~~Iia~~l-~~~~~~I~~d~~l~~dLG~DSl~~vel~~~le~~f~i~i~~~~~~~~~Tv~~l~~~~~~~   76 (101)
T 2kw2_A            3 STFDRVATIIAETC-DIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWTQEVNDGKATTEQYFV   76 (101)
T ss_dssp             CHHHHHHHHHHHHH-CCCGGGCCTTCBCCCCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSSCHHHHHB
T ss_pred             HHHHHHHHHHHHHH-CCCHHHCCCCHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf             89999999999997-878876687503898728757899999999999988997999987289999999999999


No 20 
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=99.53  E-value=1.8e-14  Score=100.69  Aligned_cols=80  Identities=26%  Similarity=0.358  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHH---CCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf             5899999999999983---6999988487867454206571009999999999838834888985058899999999985
Q gi|254780534|r    5 NDDVFEAVKEVILSQL---TSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA   81 (85)
Q Consensus         5 ~~ei~~~v~~ii~~~l---~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~   81 (85)
                      .+.+.+++..++.+.+   .+++|+.+.+++++.+|||+|||+.+||+..+|++||++||++++.++.||+++++||.++
T Consensus        17 ~~~i~~~i~~~i~~il~~~~~i~p~~~~~~~~~~~DLG~DSL~~~el~~~le~~f~i~i~~~~~~~~~TV~dl~~~i~~k   96 (107)
T 3ce7_A           17 INAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNFQTLQEIADFVVSE   96 (107)
T ss_dssp             HHHHHHHHHHHHHTTBCTTCCCCTTSCGGGSBBTTSSBCCHHHHHHHHHHHHHHHTCCCCHHHHTTCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf             58899999999999987750789011044210256408766999999999999978998989973469899999999984


Q ss_pred             HHC
Q ss_conf             537
Q gi|254780534|r   82 KQT   84 (85)
Q Consensus        82 ~~~   84 (85)
                      ...
T Consensus        97 ~a~   99 (107)
T 3ce7_A           97 RAK   99 (107)
T ss_dssp             HHS
T ss_pred             HHC
T ss_conf             621


No 21 
>2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea}
Probab=99.44  E-value=1e-13  Score=96.56  Aligned_cols=76  Identities=18%  Similarity=0.318  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHCC-CCHHHCCCCCCHH-HHCCCCHHHHHHHHHHHHHHHCCCCCHHHH--HCCCCHHHHHHHHHHHHH
Q ss_conf             999999999998369-9998848786745-420657100999999999983883488898--505889999999998553
Q gi|254780534|r    8 VFEAVKEVILSQLTS-VKEDQIVESARFI-EELGADSLDVVELVMIFEEKFSLEIPEESA--NKILTVKDAVDFIRKAKQ   83 (85)
Q Consensus         8 i~~~v~~ii~~~l~~-~~~~~i~~ds~l~-~dLg~DSLd~vel~~~lE~~f~i~i~~~~~--~~~~Tv~dlv~~I~~~~~   83 (85)
                      ..++|+++|++.+.. .+++.+.++++|. ++||+|||+.+++++.+|++||++||++++  +++.||+.+++||++|..
T Consensus         3 ~~e~vr~~i~e~l~l~~~~~~l~~d~~L~~~~lglDSl~~vel~~~lE~~fgi~i~d~dl~~~~f~tv~~l~~~v~~klA   82 (83)
T 2amw_A            3 HLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDEISAQTFETLGSLALFVEHKLS   82 (83)
T ss_dssp             THHHHHHHHHHHTTCGGGGGSCCTTSCSTTTSTTTTHHHHHHHHHHHHHHTTCCCCTTTCCGGGSSSHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHCCHHHCCCHHHHHHHHHHHHC
T ss_conf             49999999999808888723368985222367698808999999999999498268122008756899999999999853


No 22 
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=99.44  E-value=3.1e-13  Score=93.84  Aligned_cols=81  Identities=20%  Similarity=0.313  Sum_probs=71.3

Q ss_pred             CCHHHHHHHHHHHHHHHHC-CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHH--CCCCHHHHHHHHH
Q ss_conf             7858999999999999836-999988487867454206571009999999999838834888985--0588999999999
Q gi|254780534|r    3 NANDDVFEAVKEVILSQLT-SVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN--KILTVKDAVDFIR   79 (85)
Q Consensus         3 ~t~~ei~~~v~~ii~~~l~-~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~--~~~Tv~dlv~~I~   79 (85)
                      .....+.++|++++++.+. .+++++|.++++|. |||+|||+.++++..+|++||++||++++.  .+.||+++++||.
T Consensus        18 ~~~~~v~e~i~~ila~~l~l~~~~e~i~~d~~l~-dlGlDSL~~vel~~~ie~~fgi~i~~~~l~~~~~~ti~~La~~V~   96 (105)
T 2jq4_A           18 YFQGHMNATIREILAKFGQLPTPVDTIADEADLY-AAGLSSFASVQLMLGIEEAFDIEFPDNLLNRKSFASIKAIEDTVK   96 (105)
T ss_dssp             -----CHHHHHHHHHHTSCCSSCGGGCCTTSCGG-GGTCCHHHHHHHHHHHHHHHSCCCCHHHHSSGGGGCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf             8999999999999999866899998869999888-818858999999999999979846899984875278999999999


Q ss_pred             HHHHC
Q ss_conf             85537
Q gi|254780534|r   80 KAKQT   84 (85)
Q Consensus        80 ~~~~~   84 (85)
                      +.++.
T Consensus        97 ~~~~~  101 (105)
T 2jq4_A           97 LILDG  101 (105)
T ss_dssp             HHHHT
T ss_pred             HHHCC
T ss_conf             98826


No 23 
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
Probab=99.40  E-value=3e-13  Score=93.94  Aligned_cols=80  Identities=19%  Similarity=0.272  Sum_probs=73.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf             87858999999999999836999988487867454206571009999999999838834888985058899999999985
Q gi|254780534|r    2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA   81 (85)
Q Consensus         2 ~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~   81 (85)
                      .+|.+++.+.+++++.+. .+++++.+.++++|. +||+|||+.++++..++++||++||.+.+.++.|++++++||.++
T Consensus         3 ~~t~~~l~~~lr~~~~~~-~~vd~~~i~~d~~~~-dlG~DSl~~~~l~~~l~~~~gi~l~~~~~~~~~Ti~~l~~~v~~~   80 (95)
T 1nq4_A            3 LLTLSDLLTLLRECAGEE-ESIDLGGDVEDVAFD-ALGYDSLALLNTVGRIERDYGVQLGDDAVEKATTPRALIEMTNAS   80 (95)
T ss_dssp             CCCHHHHHHHHHHHHTCS-STTCSCSCCSSSCHH-HHTCCSHHHHHHHHHHHHHTCCCSCTTHHHHCCSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHH-HCCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf             578999999999999888-388820078998998-939978999999999999998986899997599999999999976


Q ss_pred             HH
Q ss_conf             53
Q gi|254780534|r   82 KQ   83 (85)
Q Consensus        82 ~~   83 (85)
                      ..
T Consensus        81 l~   82 (95)
T 1nq4_A           81 LT   82 (95)
T ss_dssp             HH
T ss_pred             CC
T ss_conf             45


No 24 
>1af8_A Actinorhodin polyketide synthase acyl carrier protein; solution structure, structure, antibiotic biosynthesis; NMR {Streptomyces coelicolor A3} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=99.32  E-value=3.6e-13  Score=93.46  Aligned_cols=79  Identities=24%  Similarity=0.354  Sum_probs=66.3

Q ss_pred             CCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             78589999999999998369999884878674542065710099999999998388348889850588999999999855
Q gi|254780534|r    3 NANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK   82 (85)
Q Consensus         3 ~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~   82 (85)
                      +|.+++...+++.+.+. .+++++.+.++++|. |||+|||+.++++..+|++||++||...+.++.|++++++||.++.
T Consensus         5 ~t~e~l~~il~e~~~~~-~~~~~~~i~~d~~f~-dlG~DSl~~~el~~~le~~~gv~l~~~~~~~~~Tv~~l~~~v~~~l   82 (86)
T 1af8_A            5 LTTDDLRRALVECAGET-DGTDLSGDFLDLRFE-DIGYDSLALMETAARLESRYGVSIPDDVAGRVDTPRELLDLINGAL   82 (86)
T ss_dssp             SCHHHHHHHHHTTCCCC-SCCCTTTCSSTTSTT-TTTCCTTTHHHHHHHHTTTTCSCCCTTTTTTCCSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
T ss_conf             14999999999997641-277832144687899-9199889999999999999989858999966999999999998765


Q ss_pred             H
Q ss_conf             3
Q gi|254780534|r   83 Q   83 (85)
Q Consensus        83 ~   83 (85)
                      .
T Consensus        83 a   83 (86)
T 1af8_A           83 A   83 (86)
T ss_dssp             H
T ss_pred             H
T ss_conf             4


No 25 
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein family, structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A
Probab=99.31  E-value=7e-12  Score=86.23  Aligned_cols=78  Identities=17%  Similarity=0.149  Sum_probs=73.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
Q ss_conf             87858999999999999836999988487867454206571009999999999838834888985058899999999985
Q gi|254780534|r    2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA   81 (85)
Q Consensus         2 ~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~   81 (85)
                      |.+.+++.+++++++++.+ ++++++|.++.+|. ++|+||+..+++...++++||+++|...+.++.|++++++|+.+.
T Consensus         9 p~s~e~i~~~L~~~va~~l-~~~~~~I~~~~~~~-~lG~DSl~~~~l~~~l~~~~g~~l~~~~~~~~~ti~~La~~L~e~   86 (88)
T 2afd_A            9 PASVEDIQSWLIDQFAQQL-DVDPDDIDMEESFD-NYDLNSSKALILLGRLEKWLGKELNPVLIFNYPTIAQLAKRLGEL   86 (88)
T ss_dssp             CSSHHHHHHHHHHHHHHHH-TSCGGGCCTTSCGG-GTTCCSTHHHHHHHHHHHHTTSCCCGGGTTTCCSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHH-CCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHH
T ss_conf             9999999999999999998-93998879999998-959869999999999999988998899998499999999999986


No 26 
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=99.25  E-value=7.4e-12  Score=86.11  Aligned_cols=79  Identities=19%  Similarity=0.354  Sum_probs=71.2

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCH--HHHHCCCCHHHHHHHHHHH
Q ss_conf             85899999999999983699998848786745420657100999999999983883488--8985058899999999985
Q gi|254780534|r    4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPE--ESANKILTVKDAVDFIRKA   81 (85)
Q Consensus         4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~--~~~~~~~Tv~dlv~~I~~~   81 (85)
                      ..+++.++|++++++.+ ++++++|.++++|. +||+||+..+++...++++||+++|.  ..+.++.|++++++|+...
T Consensus         8 ~~~~~~~~v~~iia~~l-gi~~~~i~~~~~f~-~lGlDSl~~~~l~~~l~~~~~~~l~~~~s~~~e~pTi~~L~~~l~~~   85 (89)
T 2kr5_A            8 VSNEKLDAVMRVVSEES-GIALEELTDDSNFA-DMGIDSLSSMVIGSRFREDLGLDLGPEFSLFIDCTTVRALKDFMLGS   85 (89)
T ss_dssp             CCHHHHHHHHHHHHHHH-CCCGGGCCTTCBHH-HHTCCHHHHHHHHHHHHHTTCCCCCSSCCTTTSCCBHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHH-CCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHC
T ss_conf             85799999999999998-93998869998999-92997799999999999998998894564775089899999998646


Q ss_pred             HHC
Q ss_conf             537
Q gi|254780534|r   82 KQT   84 (85)
Q Consensus        82 ~~~   84 (85)
                      .++
T Consensus        86 ~~a   88 (89)
T 2kr5_A           86 GDA   88 (89)
T ss_dssp             TCC
T ss_pred             CCC
T ss_conf             789


No 27 
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1
Probab=99.13  E-value=2.7e-11  Score=82.98  Aligned_cols=73  Identities=19%  Similarity=0.395  Sum_probs=60.0

Q ss_pred             HHHHHHHHHHHC---CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             999999999836---999988487867454206571009999999999838834888985058899999999985537
Q gi|254780534|r   10 EAVKEVILSQLT---SVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQT   84 (85)
Q Consensus        10 ~~v~~ii~~~l~---~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~~   84 (85)
                      +.+++++++.+.   +.++ .+.++++|. ++|+|||..++++..+|++||+++|.+.+.++.|++++++||.++..+
T Consensus         7 e~l~~il~e~~g~~~~~~~-~~d~d~~f~-dlG~DSl~~~~l~~~ie~~~g~~l~~~~~~~~~Tv~~l~~~i~~~~a~   82 (83)
T 1or5_A            7 DDLKKLLAETAGEDDSVDL-AGELDTPFV-DLGYDSLALLETAAVLQQRYGIALTDETVGRLGTPRELLDEVNTTPAT   82 (83)
T ss_dssp             HHHHHHHHHHSCCCSSCCG-GGCSSSCHH-HHSCCHHHHHHHHHHHHTTSCCCCSHHHHHHCCCSHHHHHHHTTCCSC
T ss_pred             HHHHHHHHHHHCCCCCCCC-CCCCCCCHH-HCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHCCCCC
T ss_conf             9999999999787756677-777787988-819968999999999999998985999997399999999998546779


No 28 
>2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A
Probab=99.09  E-value=2.4e-10  Score=77.69  Aligned_cols=76  Identities=18%  Similarity=0.253  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             89999999999998369999884878674542065710099999999998388348889850588999999999855
Q gi|254780534|r    6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK   82 (85)
Q Consensus         6 ~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~   82 (85)
                      ..+.+.|+++++..+...+++.|.++.+|. ++|+|||..+++...+++.||+++|...+.++.||++++.||.+..
T Consensus        19 ~~l~~~vr~~~a~vL~~~~~~~i~~d~~f~-~lGlDSl~~~~l~~~l~~~lg~~l~~~~l~~~pTi~~La~~l~~~L   94 (95)
T 2ju1_A           19 AELVRLVRTSTATVLGHDDPKAVRATTPFK-ELGFDSLAAVRLRNLLNAATGLRLPSTLVFDHPNASAVAGFLDAEL   94 (95)
T ss_dssp             HHHHHHHHHHHHHHTTCCCGGGCCSSSCHH-HHTCSSHHHHHHHHHHGGGTSSCCCTTHHHHCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHC
T ss_conf             999999999999996899775679999988-8398789999999999999899857999982999999999999874


No 29 
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=99.09  E-value=3.4e-12  Score=88.02  Aligned_cols=76  Identities=18%  Similarity=0.279  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             899999999999983699998848786745420657100999999999983883488898505889999999998553
Q gi|254780534|r    6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ   83 (85)
Q Consensus         6 ~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~   83 (85)
                      ..+.+++++++++.+ ++++++|.++++|. |+|+||+..++++..++++||+++|...+.++.|++++++||...+.
T Consensus        11 s~i~~~l~~~~ae~l-~i~~~~i~~~~~f~-dlG~DSl~~~~l~~~l~~~~gi~l~~~~~~~~~ti~~la~~v~~~~~   86 (92)
T 1fh1_A           11 SAINKLVKAENGERT-SVALGEITTDTELT-SLGIDSLGLADVLWDLEQLYGIKIEMNTADAWSNLNNIGDVVEAVRG   86 (92)
T ss_dssp             HHHHHHC------------------------------CTTTTHHHHHHHC-----------------CTTTSTHHHHC
T ss_pred             HHHHHHHHHHHHHHH-CCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             999999999999996-98998879999888-83886499999999999998898887898735999999999999998


No 30 
>1dny_A Non-ribosomal peptide synthetase peptidyl carrier protein; four-helix bundle, modular enzyme, domain, flexible region; NMR {Brevibacillus brevis} SCOP: a.28.1.2 PDB: 2gdw_A 2gdx_A 2gdy_A 2k2q_A
Probab=98.90  E-value=4.5e-09  Score=70.53  Aligned_cols=74  Identities=18%  Similarity=0.277  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             589999999999998369999884878674542065710099999999998388348889850588999999999855
Q gi|254780534|r    5 NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK   82 (85)
Q Consensus         5 ~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~   82 (85)
                      ..+++.++.++.++.+ +.+  .+.++.+|. ++|.|||..+.++..++++||+.+|-.++.+..||+++++||..+-
T Consensus        12 ~~~~E~~l~~i~~~vL-~~~--~i~~~~~Ff-~lGgdSL~a~~l~~~i~~~~~~~l~~~~lf~~pTi~~LA~~i~~rs   85 (91)
T 1dny_A           12 TNAVESKLAEIWERVL-GVS--GIGILDNFF-QIGGHSLKAMAVAAQVHREYQVELPLKVLFAQPTIKALAQYVATRS   85 (91)
T ss_dssp             SSHHHHHHHHHHHHHH-TCS--SCCSSCCTT-SSCCSSHHHHHHHHHHHHHCCCCCCHHHHHHSCSHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHC-CCC--CCCCCCCHH-HCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCC
T ss_conf             8999999999999984-999--889998978-8289589999999999999889978999985998999999999816


No 31 
>2cg5_B Fatty acid synthase; transferase/hydrolase, transferase/hydrolase (complex), fatty acid biosynthesis, phosphopantetheine transferase, FAsn, ACP; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A
Probab=98.79  E-value=4.7e-09  Score=70.43  Aligned_cols=75  Identities=20%  Similarity=0.305  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHCCC-CHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             899999999999983699-998848786745420657100999999999983883488898505889999999998553
Q gi|254780534|r    6 DDVFEAVKEVILSQLTSV-KEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ   83 (85)
Q Consensus         6 ~ei~~~v~~ii~~~l~~~-~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~   83 (85)
                      .+...+|.+++++.+ ++ +++.|.++.+|. +||+|||..+++...++++||+++|..++.+ .|+..+.+++....+
T Consensus         5 ~d~~~~l~~~~a~vL-g~~~~~~i~~~~~f~-~lG~DSL~a~~l~~~l~~~~g~~l~~~~l~~-~T~~~La~l~~~~~~   80 (91)
T 2cg5_B            5 RDSQRDLVEAVAHIL-GIRDLAAVNLDSSLA-DLGLDALMSVEVRQTLERELNLVLSVREVRQ-LTLRKLQELSSKADE   80 (91)
T ss_dssp             ---CTTHHHHHHHHT-TCCSCTTSCTTSBTT-TTTCCHHHHHHHHHHHHHHHCCCCCHHHHHT-CBHHHHHHHHHCC--
T ss_pred             CHHHHHHHHHHHHHH-CCCCHHHCCCCCCHH-HHCCCHHHHHHHHHHHHHHHCCCCCHHHHHH-CCHHHHHHHHHCCCC
T ss_conf             289999999999991-899876769998889-9577679999999999999889877999972-039999999853256


No 32 
>2cq8_A 10-formyltetrahydrofolate dehydrogenase; 10-FTHFDH, PP-binding, acyl carrier protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63  E-value=1.4e-07  Score=62.14  Aligned_cols=77  Identities=29%  Similarity=0.294  Sum_probs=66.6

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHC-CCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             858999999999999836999988487867454206571009999999999838-8348889850588999999999855
Q gi|254780534|r    4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFS-LEIPEESANKILTVKDAVDFIRKAK   82 (85)
Q Consensus         4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~-i~i~~~~~~~~~Tv~dlv~~I~~~~   82 (85)
                      ....+.++|+.+.++.+. . +..|.++++|+ +||.|||..+.++..+.++|+ ++++-.++....|+++++.+|.++.
T Consensus        22 ~e~~~e~~l~~iw~~vL~-~-~~~i~~~~~FF-~lGGdSL~a~~l~~~ir~~~~~~~l~~~dlf~~pTl~~la~~i~~~~   98 (110)
T 2cq8_A           22 AELVTAEAVRSVWQRILP-K-VLEVEDSTDFF-KSGAASVDVVRLVEEVKELCDGLELENEDVYMASTFGDFIQLLVRKL   98 (110)
T ss_dssp             THHHHHHHHHHHHHHHCS-S-CSCCCTTCBHH-HHHCCTTHHHHHHHHHHHHHTSCCCCHHHHHHCCBHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCC-C-CCCCCCCCCHH-HCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCHHHHHHHHHHHH
T ss_conf             627999999999999838-9-87789998878-74896999999999999984897115999884877999999999983


Q ss_pred             H
Q ss_conf             3
Q gi|254780534|r   83 Q   83 (85)
Q Consensus        83 ~   83 (85)
                      +
T Consensus        99 ~   99 (110)
T 2cq8_A           99 R   99 (110)
T ss_dssp             H
T ss_pred             C
T ss_conf             3


No 33 
>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensation domain, peptide bond formation, ligase, antibiotics; 1.85A {Brevibacillus brevis}
Probab=98.61  E-value=1.4e-07  Score=62.24  Aligned_cols=75  Identities=19%  Similarity=0.277  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHHC
Q ss_conf             8999999999999836999988487867454206571009999999999838834888985058899999999985537
Q gi|254780534|r    6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQT   84 (85)
Q Consensus         6 ~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~~   84 (85)
                      .+.+.++.+|.++.+ +++  .|..+.+|. +||.|||..+.++..+.+++|++|+-.++.+..|+++++.++.+..+.
T Consensus         9 t~~E~~l~~iw~~vL-~~~--~i~~~d~Ff-~lGgDSi~Ai~l~~~l~~~~g~~i~~~di~~~~ti~~la~~~~~~~~~   83 (520)
T 2jgp_A            9 SVWEARLAQVWEQVL-NVP--QVGALDDFF-ALGGHSLRAMRVLSSMHNEYQVDIPLRILFEKPTIQELAAFIEETAKG   83 (520)
T ss_dssp             SHHHHHHHHHHHHHH-TCS--CCCTTCBTT-TTTCCHHHHHHHHHHHHHHHCBCCCHHHHHHSCBHHHHHHHHHHCCTT
T ss_pred             CHHHHHHHHHHHHHC-CCC--CCCCCCCHH-HHCCHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf             999999999999983-999--979999967-741779999999999998659977899996699599999998863668


No 34 
>2roq_A Enterobactin synthetase component F; T-TE, PCP, thioesterase, peptidyl carrier protein, thiolation domain, non-ribosomal peptide synthetase; NMR {Escherichia coli}
Probab=98.39  E-value=2.5e-07  Score=60.77  Aligned_cols=73  Identities=15%  Similarity=0.153  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf             89999999999998369999884878674542065710099999999998388348889850588999999999855
Q gi|254780534|r    6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAK   82 (85)
Q Consensus         6 ~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~   82 (85)
                      .+++.++.+|.++.+ +++  .+..+.+|. +||.|||..++++..++++||++++-.++.+..||++++.++....
T Consensus        16 ~~~E~~l~~iw~~vL-g~~--~ig~~d~Ff-~lGgdSL~a~~l~~~i~~~~g~~l~~~~l~~~pTv~~La~~~~~~~   88 (343)
T 2roq_A           16 AGSETIIAAAFSSLL-GCD--VQDADADFF-ALGGHALLAMKLAAQLSRQVARQVTPGQVMVASTVAKLATIIDAEE   88 (343)
T ss_dssp             SSHHHHHHHHHHHHT-TSS--CCCSSCCHH-HHTCCTTHHHHHHHHHHHHSSSCCCTTSSSSSSCHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHHHHHH-CCC--CCCCCCCHH-HCCCHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCHHHHHHHHHCCC
T ss_conf             999999999999983-889--779999936-6686699999999999998599746536402776999998751010


No 35 
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, termination module, phosphopantetheine; 2.6A {Bacillus subtilis}
Probab=98.16  E-value=1.7e-06  Score=56.06  Aligned_cols=75  Identities=15%  Similarity=0.283  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             5899999999999983699998848786745420657100999999999983883488898505889999999998553
Q gi|254780534|r    5 NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ   83 (85)
Q Consensus         5 ~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~   83 (85)
                      ..+++.++.+|.++.+. .+  .|..+.+|+ +||.|||..+.++..++++||++++-.++.+..||++++.+|.+...
T Consensus       970 ~~~~E~~l~~iw~~vL~-~~--~v~~~d~FF-~lGGdSL~ai~l~~~l~~~~g~~l~~~~lf~~pTi~~La~~l~~~~~ 1044 (1304)
T 2vsq_A          970 RNEMEETIAQIWSEVLG-RK--QIGIHDDFF-ALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNGGS 1044 (1304)
T ss_dssp             SSHHHHHHHHHHHHHHT-CS--CCCTTCCTT-TTTCCHHHHHHHHHHSSSTTSCCCCSSCTTTCCSHHHHHHHHHHTTS
T ss_pred             CCCCCCHHHHHHHHHCC-CC--CCCCCCCHH-HCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHCCC
T ss_conf             98321038999998729-99--768889836-54870799999999999987899789999729989999999973588


No 36 
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*
Probab=97.62  E-value=6.2e-06  Score=52.93  Aligned_cols=70  Identities=17%  Similarity=0.255  Sum_probs=52.7

Q ss_pred             HHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf             999999999998369999884878674542065710099999999998388348889850588999999999
Q gi|254780534|r    8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIR   79 (85)
Q Consensus         8 i~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~   79 (85)
                      ....+++.++..+...+++.|.++..|. +||+|||..+||...++++||+.+|..++..+ |+..+.++..
T Consensus      2124 ~~~~~~~~~~~~l~~~~~~~i~~~~~~~-~~G~DSl~a~el~~~l~~~~~~~l~~~~~~~~-~~~~l~~l~~ 2193 (2512)
T 2vz8_A         2124 SQKDLVKAVAHILGIRDVASINPDSTLV-DLGLDSLMGVEVRQILEREHDLVLSMREVRQL-SLRKLQELSS 2193 (2512)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHCCCCHHHCCCCCCHH-HCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH-HHHHHHHHHH
T ss_conf             7999999999984899866779998968-81853689999999999997897179998763-0999999996


No 37 
>2fq1_A Isochorismatase; ENTB, NRPS, multi-domain, ACP, hydrolase; 2.30A {Escherichia coli}
Probab=96.17  E-value=0.0062  Score=36.13  Aligned_cols=70  Identities=21%  Similarity=0.290  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf             99999999983699998848786745420657100999999999983883488898505889999999998553
Q gi|254780534|r   10 EAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKAKQ   83 (85)
Q Consensus        10 ~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~~~~~   83 (85)
                      +.+++.++. +. .++.++.+|.+|. ++|+||+.+|.|+...-. -|++++-.++.+-.|++.-...++++.+
T Consensus       218 ~~~~~~~~~-~~-~~~~~~~~~~nl~-~~glds~r~m~l~~~wr~-~g~~~~f~~l~~~ptl~~w~~ll~~~~~  287 (287)
T 2fq1_A          218 AALREVILP-LL-DESDEPFDDDNLI-DYGLDSVRMMALAARWRK-VHGDIDFVMLAKNPTIDAWWKLLSREVK  287 (287)
T ss_dssp             HHHHHHHGG-GC-CCSSCCCTTSCSG-GGTCCTTHHHHHHHHHTT-TCTTCCHHHHHTSCSHHHHHHHHHCC--
T ss_pred             CHHHHHHHH-HH-CCCCCCCCCCCHH-HHCCCHHHHHHHHHHHHH-CCCCCCHHHHHHCCCHHHHHHHHHHHCC
T ss_conf             226899998-74-5765558971078-727339999999999998-5998639998756689999999888629


No 38 
>1rqt_A L8, 50S ribosomal protein L7/L12; protein L7/L12,ribosome,; NMR {Escherichia coli} SCOP: a.108.1.1
Probab=69.88  E-value=2.1  Score=21.98  Aligned_cols=21  Identities=43%  Similarity=0.670  Sum_probs=17.5

Q ss_pred             CCHHHHHHHHHHHHHHHCCCC
Q ss_conf             571009999999999838834
Q gi|254780534|r   40 ADSLDVVELVMIFEEKFSLEI   60 (85)
Q Consensus        40 ~DSLd~vel~~~lE~~f~i~i   60 (85)
                      .--++++|++...|++||++-
T Consensus        14 mSVmdvveLisaMEeKFGVs~   34 (37)
T 1rqt_A           14 MSVMDVVELISAMEEKFGVSA   34 (37)
T ss_dssp             SCHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCC
T ss_conf             329999999999999848774


No 39 
>2oai_A Hemolysin; PFAM03471, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MLY; 1.80A {Xylella fastidiosa TEMECULA1} SCOP: d.145.1.4 PDB: 2r8d_A*
Probab=56.63  E-value=5.7  Score=19.53  Aligned_cols=31  Identities=16%  Similarity=0.161  Sum_probs=25.0

Q ss_pred             HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf             9999998388348889850588999999999
Q gi|254780534|r   49 VMIFEEKFSLEIPEESANKILTVKDAVDFIR   79 (85)
Q Consensus        49 ~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~   79 (85)
                      +..+++.||+.+|.++...+.|++.++-...
T Consensus        28 l~dl~~~l~~~l~~~e~~~~~TlgG~v~~~l   58 (94)
T 2oai_A           28 IEELREVLGAELPDGEENNYHTLAGMCISYF   58 (94)
T ss_dssp             HHHHHHHHTC-------CCCSBHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             9999998788998544455100999999985


No 40 
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=46.07  E-value=11  Score=17.90  Aligned_cols=23  Identities=26%  Similarity=0.390  Sum_probs=18.4

Q ss_pred             CCCHHHHHHHHHHHHHHHCCCCC
Q ss_conf             65710099999999998388348
Q gi|254780534|r   39 GADSLDVVELVMIFEEKFSLEIP   61 (85)
Q Consensus        39 g~DSLd~vel~~~lE~~f~i~i~   61 (85)
                      ++.-+...|++-.+|++||++-.
T Consensus        12 ~ltVlEl~eLvKa~EekfGVsAa   34 (40)
T 1dd4_C           12 KLTVSELAELVKKLEDKFGVTAA   34 (40)
T ss_dssp             TSCHHHHHHHHHHHHHHTCCCSC
T ss_pred             HCCHHHHHHHHHHHHHHHCCCCC
T ss_conf             47499999999999998586514


No 41 
>1v32_A AT5G08430, hypothetical protein RAFL09-47-K03; SWI/SNF complex subunit, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=42.00  E-value=18  Score=16.77  Aligned_cols=57  Identities=12%  Similarity=0.199  Sum_probs=46.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHC--CCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             87858999999999999836--9999884878674542065710099999999998388
Q gi|254780534|r    2 PNANDDVFEAVKEVILSQLT--SVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSL   58 (85)
Q Consensus         2 ~~t~~ei~~~v~~ii~~~l~--~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i   58 (85)
                      .+++.+|..+|-+.|.++=-  .-+...|.+|..|..=+|.+.+.+.+|.-.+..+|--
T Consensus        34 ~~sR~eV~k~iw~YIK~n~Lqdp~~kr~I~~D~~L~~lfg~~~v~~f~i~kll~~H~~~   92 (101)
T 1v32_A           34 MISRYDVSDTIAKYISKEGLLDPSNKKKVVCDKRLVLLFGTRTIFRMKVYDLLEKHYKE   92 (101)
T ss_dssp             CCCHHHHHHHHHHHHHHHTCBCSSCTTEEECCSHHHHHTCCSEEETTHHHHHHHHHSCS
T ss_pred             CCCHHHHHHHHHHHHHHHCCCCCCCCCEECCCHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf             66799999999999998167885557777466899998389942688799999987488


No 42 
>3gwh_A Transcriptional antiterminator (BGLG family); extended helix bundle, AB initio, structure solution, arcimboldo, phaSer, shelxe; 1.95A {Bacillus subtilis}
Probab=31.91  E-value=28  Score=15.65  Aligned_cols=22  Identities=18%  Similarity=0.295  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHHHCCCCCHHHHH
Q ss_conf             9999999999838834888985
Q gi|254780534|r   45 VVELVMIFEEKFSLEIPEESAN   66 (85)
Q Consensus        45 ~vel~~~lE~~f~i~i~~~~~~   66 (85)
                      +..+...++++||+.+|++++.
T Consensus        79 a~~i~~~le~~~~~~i~~~Ei~  100 (111)
T 3gwh_A           79 AWKLIKILQQTLKKPVHEAEAV  100 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCTHHHH
T ss_pred             HHHHHHHHHHHHCCCCCHHHHH
T ss_conf             9999999999988999999999


No 43 
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens}
Probab=31.53  E-value=29  Score=15.61  Aligned_cols=41  Identities=10%  Similarity=0.276  Sum_probs=28.4

Q ss_pred             CCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHH
Q ss_conf             98785899999999999983699998848786745420657100
Q gi|254780534|r    1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLD   44 (85)
Q Consensus         1 M~~t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd   44 (85)
                      +|++.++...++..++.+++...+..++   .....+|+..+.-
T Consensus         2 ~pl~~ee~kk~~~~il~EYf~~~D~~Ea---~~~l~eL~~~~~~   42 (165)
T 2rg8_A            2 LPLDERAFEKTLTPIIQEYFEHGDTNEV---AEMLRDLNLGEMK   42 (165)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHCCHHHH---HHHHHHHTCSGGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHCCCHHH
T ss_conf             9999999999999999999858999999---9999983881218


No 44 
>3ded_A Probable hemolysin; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, membrane; HET: MSE; 2.14A {Chromobacterium violaceum} SCOP: d.145.1.4
Probab=31.22  E-value=25  Score=15.93  Aligned_cols=31  Identities=29%  Similarity=0.389  Sum_probs=23.7

Q ss_pred             HHHHHHHHCCCCC--HHHHHCCCCHHHHHHHHH
Q ss_conf             9999998388348--889850588999999999
Q gi|254780534|r   49 VMIFEEKFSLEIP--EESANKILTVKDAVDFIR   79 (85)
Q Consensus        49 ~~~lE~~f~i~i~--~~~~~~~~Tv~dlv~~I~   79 (85)
                      +..+++.|++.+|  ++.-.++.|++.++-...
T Consensus        45 l~dl~~~l~~~lp~~~~e~~d~dTlgGlvl~~l   77 (113)
T 3ded_A           45 LDRFREFFELEAPLPGEAGGNIHTLAGVMLYQL   77 (113)
T ss_dssp             HHHHHHHTTCCSCCTTGGGTCCCBHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             999999879988877543577231999999986


No 45 
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=30.96  E-value=17  Score=16.87  Aligned_cols=55  Identities=5%  Similarity=0.064  Sum_probs=44.6

Q ss_pred             CCHHHHHHHHHHHHHHHHCCC---CHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             785899999999999983699---99884878674542065710099999999998388
Q gi|254780534|r    3 NANDDVFEAVKEVILSQLTSV---KEDQIVESARFIEELGADSLDVVELVMIFEEKFSL   58 (85)
Q Consensus         3 ~t~~ei~~~v~~ii~~~l~~~---~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i   58 (85)
                      .|..+|..++-+.|.+.- ..   +...|.+|..|..=+|.|.+.+.+|--.+..+|--
T Consensus        27 ~tR~~v~k~iw~YIk~n~-Lqd~~dkr~I~~D~~L~~lf~~~~~~~~~i~k~l~~Hl~p   84 (93)
T 1uhr_A           27 QTRPVIIQALWQYIKTHK-LQDPHEREFVLCDKYLQQIFESQRMKFSEIPQRLHALLMP   84 (93)
T ss_dssp             EEHHHHHHHHHHHHHHTT-CBCSSCSSEECCCTTHHHHTCCSSEEGGGSHHHHHHHEEC
T ss_pred             CCHHHHHHHHHHHHHHHC-CCCCCCCCEEECCHHHHHHHCCCCCCHHHHHHHHHHHCCC
T ss_conf             689999999999999856-8787767878355899998189924399899999966799


No 46 
>2pli_A Uncharacterized protein; CORC-associated region, MCSG, PSI2, structural genomics, protein structure initiative; 1.70A {Neisseria meningitidis MC58} SCOP: d.145.1.4
Probab=29.73  E-value=24  Score=15.99  Aligned_cols=28  Identities=18%  Similarity=0.013  Sum_probs=21.7

Q ss_pred             HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf             9999998388348889850588999999999
Q gi|254780534|r   49 VMIFEEKFSLEIPEESANKILTVKDAVDFIR   79 (85)
Q Consensus        49 ~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~   79 (85)
                      +..+++.||+.+|++   ++.|++.++-...
T Consensus        28 l~dl~~~~~~~l~~~---e~~Tl~G~i~~~l   55 (91)
T 2pli_A           28 IEDINTFFGTEYSSE---EADTIGGLVIQEL   55 (91)
T ss_dssp             HHHHHHHHCCCCCCS---SCCBHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCC---CCHHHHHHHHHHH
T ss_conf             999999869899855---3240999999985


No 47 
>2r2z_A Hemolysin; APC85144, structure initiative, midwest center for structural genomics, MCSG, PSI-2, protein structure initiative; 1.20A {Enterococcus faecalis V583} SCOP: d.145.1.4
Probab=29.28  E-value=29  Score=15.56  Aligned_cols=27  Identities=15%  Similarity=0.149  Sum_probs=20.8

Q ss_pred             HHHHHHHHCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf             999999838834888985058899999999
Q gi|254780534|r   49 VMIFEEKFSLEIPEESANKILTVKDAVDFI   78 (85)
Q Consensus        49 ~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I   78 (85)
                      +..+++.||+.+|++   ++.|++.++-..
T Consensus        26 l~dl~~~~~~~l~~~---~~~TlgG~i~~~   52 (93)
T 2r2z_A           26 IDEFNEVFETDLHMS---DVDTMAGYLITA   52 (93)
T ss_dssp             HHHHHHHHTCCCCCT---TCCBHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCC---CCCCHHHHHHHH
T ss_conf             999999879799877---631099999998


No 48 
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa}
Probab=28.65  E-value=31  Score=15.39  Aligned_cols=26  Identities=27%  Similarity=0.243  Sum_probs=19.9

Q ss_pred             HHHHHHHCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf             99999838834888985058899999999
Q gi|254780534|r   50 MIFEEKFSLEIPEESANKILTVKDAVDFI   78 (85)
Q Consensus        50 ~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I   78 (85)
                      ..+++.||+.+|++   ++.|++.++-..
T Consensus        20 ~dl~~~~~~~l~~~---~~~TlgG~i~~~   45 (83)
T 3llb_A           20 DAFNDFFGSEFSDE---EFDTVGGLVMSA   45 (83)
T ss_dssp             HHHHHHHCCCCCTT---TCSBHHHHHHHH
T ss_pred             HHHHHHHCCCCCCC---CCHHHHHHHHHH
T ss_conf             99999879699976---524099999998


No 49 
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} PDB: 2o1r_A*
Probab=27.75  E-value=31  Score=15.45  Aligned_cols=26  Identities=15%  Similarity=0.084  Sum_probs=20.4

Q ss_pred             HHHHHHHCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf             99999838834888985058899999999
Q gi|254780534|r   50 MIFEEKFSLEIPEESANKILTVKDAVDFI   78 (85)
Q Consensus        50 ~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I   78 (85)
                      ..+++.||+.+|++   ++.|++.++-..
T Consensus        20 ~dl~~~~~~~l~~~---~~~TigG~v~~~   45 (81)
T 3lae_A           20 RDLNKMFNWELDTE---DARTFNGLILEH   45 (81)
T ss_dssp             HHHHHHHCCCCCCS---SCSBHHHHHHHH
T ss_pred             HHHHHHHCCCCCCC---CCHHHHHHHHHH
T ss_conf             99999869799988---770099999998


No 50 
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=27.26  E-value=34  Score=15.18  Aligned_cols=35  Identities=14%  Similarity=0.426  Sum_probs=27.9

Q ss_pred             HHHHHHHHCCCCCHHHH-----HCCCCHHHHHHHHHHHHH
Q ss_conf             99999983883488898-----505889999999998553
Q gi|254780534|r   49 VMIFEEKFSLEIPEESA-----NKILTVKDAVDFIRKAKQ   83 (85)
Q Consensus        49 ~~~lE~~f~i~i~~~~~-----~~~~Tv~dlv~~I~~~~~   83 (85)
                      +..+=++-||+||-+-+     .+++|=.++.+||+.+|.
T Consensus        12 vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~   51 (67)
T 2bnk_A           12 VLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRT   51 (67)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9989987088673899999998633119999999986576


No 51 
>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- 2, protein structure initiative, joint center for structural genomics, JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1
Probab=26.00  E-value=34  Score=15.16  Aligned_cols=45  Identities=20%  Similarity=0.335  Sum_probs=28.4

Q ss_pred             CHHHHHHHHHHHHHHHHCCCCHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHCCCCCHH
Q ss_conf             858999999999999836999988487867454206571009999999999838834888
Q gi|254780534|r    4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE   63 (85)
Q Consensus         4 t~~ei~~~v~~ii~~~l~~~~~~~i~~ds~l~~dLg~DSLd~vel~~~lE~~f~i~i~~~   63 (85)
                      |.....++|.+++...-...   ...+.            ..-|-+..+|+++|+++|++
T Consensus         2 m~~~~~e~i~~~~~~~~~~~---~~~~~------------at~e~I~~~E~~LG~~LP~d   46 (160)
T 2icg_A            2 MASSFLEEVDRLITLSGITF---HASGT------------GTPELIKIYQDALGNEFPET   46 (160)
T ss_dssp             HHHHHHHHHHHHHHHCCSCC---BCCCC------------CCHHHHHHHHHHHTCCCCHH
T ss_pred             CCHHHHHHHHHHHHHCCCCE---ECCCC------------CCHHHHHHHHHHHCCCCCHH
T ss_conf             52789999999998406725---05999------------89999999999978988999


No 52 
>2rk5_A Putative hemolysin; structural genomics, PSI-2, MCSG, protein structure initiative, midwest center for structural genomics, membrane; 1.50A {Streptococcus mutans UA159} SCOP: d.145.1.4
Probab=25.29  E-value=37  Score=14.97  Aligned_cols=28  Identities=14%  Similarity=0.099  Sum_probs=21.5

Q ss_pred             HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf             9999998388348889850588999999999
Q gi|254780534|r   49 VMIFEEKFSLEIPEESANKILTVKDAVDFIR   79 (85)
Q Consensus        49 ~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~   79 (85)
                      +-.+++.||+.+|++   ++.|++.++-...
T Consensus        18 l~dl~~~~~~~l~~~---~~dTl~G~i~~~l   45 (87)
T 2rk5_A           18 LNDFNEYFETDLESD---NVDTIAGFYLTGV   45 (87)
T ss_dssp             HHHHHHHHTCCCCCT---TCCBHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCC---CCEEHHHHHHHHH
T ss_conf             999999879799987---7502999999986


No 53 
>2p13_A CBS domain; alpha-beta structure, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.65A {Nitrosomonas europaea} SCOP: d.145.1.4
Probab=24.75  E-value=29  Score=15.55  Aligned_cols=29  Identities=7%  Similarity=0.103  Sum_probs=21.6

Q ss_pred             HHHHHHHHCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf             999999838834888985058899999999
Q gi|254780534|r   49 VMIFEEKFSLEIPEESANKILTVKDAVDFI   78 (85)
Q Consensus        49 ~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I   78 (85)
                      +..+++.||+.+|++. .++.|++.++-..
T Consensus        25 l~dl~~~~~~~l~~e~-~~~~Tl~G~i~~~   53 (90)
T 2p13_A           25 IRKASNLLEHDLVDEA-ERYSTLGGYLLWQ   53 (90)
T ss_dssp             HHHHHHHHTSCCCCTT-CCCCBHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCC-CCCCCHHHHHHHH
T ss_conf             9999998787999866-6750299999998


No 54 
>2pls_A CBS domain protein; APC86064.2, CORC/HLYC transporter associated domain, structural genomics PSI-2, protein structure initiative; 2.15A {Chlorobium tepidum tls} SCOP: d.145.1.4
Probab=24.16  E-value=29  Score=15.60  Aligned_cols=31  Identities=13%  Similarity=0.170  Sum_probs=22.8

Q ss_pred             HHHHHHHHCCCCCHH-HHHCCCCHHHHHHHHH
Q ss_conf             999999838834888-9850588999999999
Q gi|254780534|r   49 VMIFEEKFSLEIPEE-SANKILTVKDAVDFIR   79 (85)
Q Consensus        49 ~~~lE~~f~i~i~~~-~~~~~~Tv~dlv~~I~   79 (85)
                      +..+++.||+.+|++ +-..+.|++.++-...
T Consensus        19 l~dl~~~l~~~~~~~~~~~~~~Tl~G~v~~~l   50 (86)
T 2pls_A           19 VPELKDTLGLRAVPEEEKGVYHTLSGMIMWLL   50 (86)
T ss_dssp             HHHHHHHHTCSCCTTTTSCSCCBHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             99999987889986122567543999999976


No 55 
>2o3g_A Putative protein; APC85631.1, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.55A {Neisseria meningitidis MC58} SCOP: d.145.1.4
Probab=21.34  E-value=20  Score=16.47  Aligned_cols=30  Identities=17%  Similarity=0.089  Sum_probs=22.3

Q ss_pred             HHHHHHHHCCCCCHHHHHCCCCHHHHHHHHH
Q ss_conf             9999998388348889850588999999999
Q gi|254780534|r   49 VMIFEEKFSLEIPEESANKILTVKDAVDFIR   79 (85)
Q Consensus        49 ~~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I~   79 (85)
                      +..+++.||+.+|+++ .++.|++.++-...
T Consensus        27 l~dl~~~l~~~l~~~~-~~~~Tl~G~i~~~l   56 (92)
T 2o3g_A           27 YVELAPQLNLPQQEED-ADFHTVAGLIMEEL   56 (92)
T ss_dssp             HHHHTTTTTCCCCCTT-CSCSBHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCC-CCCEEHHHHHHHHH
T ss_conf             9999997698998645-56304899999983


No 56 
>2p3h_A Uncharacterized CBS domain-containing protein; structural genomics, CORC_HLYC, PFAM03471, putative transport protein; 1.80A {Corynebacterium glutamicum} SCOP: d.145.1.4
Probab=21.06  E-value=45  Score=14.49  Aligned_cols=26  Identities=19%  Similarity=0.110  Sum_probs=20.0

Q ss_pred             HHHHHHHCCCCCHHHHHCCCCHHHHHHHH
Q ss_conf             99999838834888985058899999999
Q gi|254780534|r   50 MIFEEKFSLEIPEESANKILTVKDAVDFI   78 (85)
Q Consensus        50 ~~lE~~f~i~i~~~~~~~~~Tv~dlv~~I   78 (85)
                      ..+++.||+.+|++   ++.|++.++-..
T Consensus        23 ~dl~~~l~~~l~~~---~~~Tl~G~v~~~   48 (101)
T 2p3h_A           23 DEVERAIGYELPEG---DYETISGLLFDH   48 (101)
T ss_dssp             HHHHHHHTSCCCCS---SCCBHHHHHHHH
T ss_pred             HHHHHHHCCCCCCC---CCHHHHHHHHHH
T ss_conf             99999878899876---711199999998


Done!