RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780534|ref|YP_003064947.1| acyl carrier protein [Candidatus Liberibacter asiaticus str. psy62] (85 letters) >2qnw_A Acyl carrier protein; malaria, SGC, structural genomics consortium, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.90A {Toxoplasma gondii RH} (A:) Length = 82 Score = 53.6 bits (129), Expect = 9e-09 Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 1/77 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 + E VK+ +++ V +I + FI++L ADSLD VELVM FEEKF + IP+E A Sbjct: 6 RPLLERVKD-VVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEA 64 Query: 66 NKILTVKDAVDFIRKAK 82 +KI TV+DA+ +I KAK Sbjct: 65 SKIATVQDALSYIEKAK 81 >2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* (A:1-63) Length = 63 Score = 51.9 bits (125), Expect = 3e-08 Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 1/62 (1%) Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66 +A+ + + + DSL + L++ E + ++ Sbjct: 2 PTLDALTPIFRQVF-DDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQ 60 Query: 67 KI 68 K+ Sbjct: 61 KL 62 >2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} (A:) Length = 83 Score = 51.6 bits (124), Expect = 3e-08 Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Query: 7 DVFEAVKEVILSQL-TSVKEDQIVESARFIEE-LGADSLDVVELVMIFEEKFSLEIPEE- 63 EAV+ ++ L ++ + S+ + DS+ VV ++ EE F + ++ Sbjct: 2 QHLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDE 61 Query: 64 -SANKILTVKDAVDFIRKAK 82 SA T+ F+ Sbjct: 62 ISAQTFETLGSLALFVEHKL 81 >3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} (A:) Length = 97 Score = 51.1 bits (122), Expect = 5e-08 Identities = 36/77 (46%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 + E VK+ I+ + VK++++ +A F+E+LGADSLD VELVM EE+F EIP+E A Sbjct: 21 STIEERVKK-IIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEA 79 Query: 66 NKILTVKDAVDFIRKAK 82 KI TV+ A+D+I + Sbjct: 80 EKITTVQAAIDYINGHQ 96 >1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.50A {Thermus thermophilus HB8} (A:) Length = 80 Score = 50.9 bits (122), Expect = 6e-08 Identities = 37/75 (49%), Positives = 54/75 (72%), Gaps = 1/75 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 ++FE VK +++ V+ +++ ARFIE+LGADSLD VEL+M E++F LEI +E A Sbjct: 4 QEIFEKVKA-VIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEA 62 Query: 66 NKILTVKDAVDFIRK 80 KI TVKDAV++I+ Sbjct: 63 EKIRTVKDAVEYIKA 77 >1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} (D:) Length = 81 Score = 50.5 bits (121), Expect = 8e-08 Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 D E V + I+ V E + A F E+LGAD LDVVELVM E++F +EI +E A Sbjct: 6 ADTLERVTK-IIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDA 64 Query: 66 NKILTVKDAVDFIRKAK 82 KI TV DAV++I+ + Sbjct: 65 EKIATVGDAVNYIQNQQ 81 >2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:) Length = 99 Score = 50.3 bits (120), Expect = 9e-08 Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 + + + V +L + +++ ++ F+++LG DSLD VE++M E++F EIP+ A Sbjct: 14 EGIQDRVLY-VLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDA 72 Query: 66 NKILTVKDAVDFIRKAKQT 84 K++ ++ VD+I K Sbjct: 73 EKLMCPQEIVDYIADKKDV 91 >3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} PDB: 3gzl_A* 2fq0_A* 2fq2_A* (A:) Length = 81 Score = 50.2 bits (120), Expect = 1e-07 Identities = 36/78 (46%), Positives = 57/78 (73%), Gaps = 1/78 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 F+ +K+ I+S+ SV+ED+I ++ F ++LGADSLD+VEL+M EEKF++ I ++ A Sbjct: 4 KSTFDDIKK-IISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDA 62 Query: 66 NKILTVKDAVDFIRKAKQ 83 KI TV+DA+D+I K + Sbjct: 63 LKINTVQDAIDYIEKNNK 80 >3lmo_A Specialized acyl carrier protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Rhodopseudomonas palustris} (A:) Length = 101 Score = 49.5 bits (118), Expect = 1e-07 Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%) Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66 F+ V I+++ + + I + I++LG DSLD +++ ++ F +++P E Sbjct: 3 STFDRVAT-IIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWT 61 Query: 67 KILTVKDAVDFIRKAKQT 84 + + A + Sbjct: 62 QEVNDGKATTEQYFVLKN 79 >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* (A:40-205) Length = 166 Score = 48.8 bits (116), Expect = 2e-07 Identities = 8/62 (12%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61 +A + ++ ++ +Q + +I S + +G S E++ ++F Sbjct: 102 QDAPVTATDVIRALV-AQKLKKELTEIPPSKAIKDLVGGKSTLQNEILGDLGKEFGSTPE 160 Query: 62 EE 63 + Sbjct: 161 KP 162 >1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle; NMR {Lactobacillus casei} (A:) Length = 80 Score = 49.0 bits (117), Expect = 2e-07 Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 3/80 (3%) Query: 5 NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEES 64 ++ + V + IL+ LT + + E DS+ V+L++ + +F ++ P Sbjct: 2 DEAIKNGVLD-ILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSE 60 Query: 65 --ANKILTVKDAVDFIRKAK 82 + T + + +A+ Sbjct: 61 FDRKEWDTPNKIIAKVEQAQ 80 >2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.30A {Aquifex aeolicus VF5} PDB: 2eht_A (A:) Length = 77 Score = 49.0 bits (117), Expect = 2e-07 Identities = 36/74 (48%), Positives = 57/74 (77%), Gaps = 1/74 (1%) Query: 8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANK 67 + E VKE I+++ V++++I A+F+E+LGADSLDVVEL+M FEE+F +EIP+E A K Sbjct: 2 LEERVKE-IIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEK 60 Query: 68 ILTVKDAVDFIRKA 81 I TV D ++++++ Sbjct: 61 IQTVGDVINYLKEK 74 >1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynthesis, lipid transport; HET: PSR; 1.20A {Escherichia coli} (A:) Length = 78 Score = 48.3 bits (115), Expect = 3e-07 Identities = 35/77 (45%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 + E VK+ I+ + VK++++ +A F+E+LGADSLD VELVM EE+F EIP+E A Sbjct: 2 STIEERVKK-IIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEA 60 Query: 66 NKILTVKDAVDFIRKAK 82 K+ TV+ A+D+I + Sbjct: 61 EKMTTVQAAIDYINGHQ 77 >2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* (A:) Length = 82 Score = 47.9 bits (114), Expect = 4e-07 Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%) Query: 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE 63 A + + V + I+ + ++ D +V + +LGADSLD VE+VM EE+F + + E+ Sbjct: 1 AKKETIDKVSD-IVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDED 59 Query: 64 SANKILTVKDAVDFIRKAKQ 83 A I T++ A D I + Sbjct: 60 KAQDISTIQQAADVIEGLLE 79 >1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis H37RV} (A:) Length = 115 Score = 47.4 bits (112), Expect = 8e-07 Identities = 22/76 (28%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 +++ + E I+ ++T ++ +I F+++L DSL +VE+ + E+K+ ++IP+E Sbjct: 6 EEIIAGIAE-IIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDL 64 Query: 66 NKILTVKDAVDFIRKA 81 + TV D V +I+K Sbjct: 65 AGLRTVGDVVAYIQKL 80 >2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} (A:) Length = 82 Score = 46.8 bits (111), Expect = 9e-07 Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 +++ + E I++++ + + + F ++L DSL +VE+V+ EE+F ++IP++ Sbjct: 6 EEIVAGLAE-IVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDV 64 Query: 66 NKILTVKDAVDFIRKAK 82 + TV DA +I + Sbjct: 65 KNLKTVGDATKYILDHQ 81 >1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.00A {Thermotoga maritima MSB8} (A:) Length = 100 Score = 44.5 bits (105), Expect = 5e-06 Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 + E I S+ + + E F +ELG DS+DV++LV FE++F+L I +E Sbjct: 16 KKLIAKFVE-IASEKXGKDLETVDEENTF-KELGFDSIDVIDLVXFFEDEFALRIEDEEI 73 Query: 66 NKILTVKDAVDFIRKA 81 +KI VKD +D + K Sbjct: 74 SKIRKVKDLIDIVIKK 89 >2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopantetheine; 1.83A {Mycobacterium tuberculosis} (A:) Length = 113 Score = 44.6 bits (105), Expect = 5e-06 Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 + EA+ + ++ +++LG DSL + +L+ E++F + I A Sbjct: 25 GAMEEAINA-TIQRILRTDRGITANQ-VLVDDLGFDSLKLFQLITELEDEFDIAISFRDA 82 Query: 66 NKILTVKDAVDFIRKA 81 I TV D + Sbjct: 83 QNIKTVGDVYTSVAVW 98 >1af8_A Actinorhodin polyketide synthase acyl carrier protein; solution structure, structure, antibiotic biosynthesis; NMR {Streptomyces coelicolor} (A:) Length = 86 Score = 42.2 bits (99), Expect = 3e-05 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 DD+ A+ E + RF E++G DSL ++E E ++ + IP++ A Sbjct: 8 DDLRRALVE-CAGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYGVSIPDDVA 65 Query: 66 NKILTVKDAVDFIRKA 81 ++ T ++ +D I A Sbjct: 66 GRVDTPRELLDLINGA 81 >2ju1_A Erythronolide synthase; carrier protein domain, modular polyketide synthase, alpha- helical bundle, acyltransferase; NMR {Saccharopolyspora erythraea} PDB: 2ju2_A (A:) Length = 95 Score = 41.4 bits (97), Expect = 4e-05 Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 1/74 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 ++ V+ + + + + V + +ELG DSL V L + L +P Sbjct: 19 AELVRLVRT-STATVLGHDDPKAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLV 77 Query: 66 NKILTVKDAVDFIR 79 F+ Sbjct: 78 FDHPNASAVAGFLD 91 >1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} (A:) Length = 95 Score = 39.2 bits (91), Expect = 2e-04 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 D+ ++E + S+ VE F + LG DSL ++ V E + +++ +++ Sbjct: 7 SDLLTLLRE-CAGEEESIDLGGDVEDVAF-DALGYDSLALLNTVGRIERDYGVQLGDDAV 64 Query: 66 NKILTVKDAVDFIRKA 81 K T + ++ + Sbjct: 65 EKATTPRALIEMTNAS 80 >2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl carrier protein family, structural genomics, PSI, protein structure initiative; NMR {Nostoc SP} PDB: 2afe_A (A:) Length = 88 Score = 38.7 bits (90), Expect = 3e-04 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 +D+ + + +Q V D I F + +S + L+ E+ E+ Sbjct: 13 EDIQSWLID-QFAQQLDVDPDDIDMEESF-DNYDLNSSKALILLGRLEKWLGKELNPVLI 70 Query: 66 NKILTVKDAVDFIRK 80 T+ + + Sbjct: 71 FNYPTIAQLAKRLGE 85 >2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} (A:) Length = 105 Score = 38.0 bits (88), Expect = 4e-04 Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 2/80 (2%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEES- 64 + ++E++ + + G S V+L++ EE F +E P+ Sbjct: 21 GHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLL 80 Query: 65 -ANKILTVKDAVDFIRKAKQ 83 ++K D ++ Sbjct: 81 NRKSFASIKAIEDTVKLILD 100 >1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} (A:) Length = 92 Score = 37.5 bits (87), Expect = 6e-04 Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 + + VK + TSV +I LG DSL + +++ E+ + ++I +A Sbjct: 11 SAINKLVKA-ENGERTSVALGEITTDTEL-TSLGIDSLGLADVLWDLEQLYGIKIEMNTA 68 Query: 66 NKILTVKDAVDFIRKAKQ 83 + + + D + + Sbjct: 69 DAWSNLNNIGDVVEAVRG 86 >1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} (A:) Length = 83 Score = 35.6 bits (82), Expect = 0.003 Identities = 11/77 (14%), Positives = 35/77 (45%), Gaps = 3/77 (3%) Query: 7 DVFEAVKEVILSQL--TSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEES 64 + +K+++ + F +LG DSL ++E + ++++ + + +E+ Sbjct: 4 LTVDDLKKLLAETAGEDDSVDLAGELDTPF-VDLGYDSLALLETAAVLQQRYGIALTDET 62 Query: 65 ANKILTVKDAVDFIRKA 81 ++ T ++ +D + Sbjct: 63 VGRLGTPRELLDEVNTT 79 >2cg5_B Fatty acid synthase; transferase/hydrolase, transferase/hydrolase (complex), fatty acid biosynthesis, phosphopantetheine transferase, FAsn, ACP; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A (B:) Length = 91 Score = 26.1 bits (57), Expect = 1.7 Identities = 9/46 (19%), Positives = 22/46 (47%) Query: 16 ILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61 ++ + +++ V + +LG D+L VE+ E + +L + Sbjct: 14 AVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLS 59 >1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} (A:23-145) Length = 123 Score = 25.7 bits (56), Expect = 2.2 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 5/37 (13%) Query: 5 NDDVFEAVKEVILSQLTSVKEDQIVESA--RFIEELG 39 N FEA+ +L+Q T + V + Sbjct: 5 NALKFEALLGAVLTQNTKFEA---VLKSLENLKNAFI 38 >2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii} (A:) Length = 342 Score = 25.8 bits (55), Expect = 2.3 Identities = 2/25 (8%), Positives = 8/25 (32%) Query: 25 EDQIVESARFIEELGADSLDVVELV 49 + A+ I + ++ + Sbjct: 251 MHSPEKYAKLILKARPMFVEAKAYM 275 >2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A {Methanocaldococcus jannaschii} (A:) Length = 311 Score = 25.4 bits (54), Expect = 2.7 Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 5/74 (6%) Query: 10 EAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKIL 69 E + I + L D I++ E +++ + + + +L Sbjct: 214 EKKRTCIRTTLIRGYNDDILKFVELYERADVHFIELKSYMHVGYSQK-----RLKKEDML 268 Query: 70 TVKDAVDFIRKAKQ 83 + + + + Sbjct: 269 QHDEILKLAKMLDE 282 >1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation, base twisting, hydrolase; 2.00A {Methanothermobacterthermautotrophicus} (A:29-139) Length = 111 Score = 24.5 bits (53), Expect = 4.7 Identities = 4/20 (20%), Positives = 8/20 (40%) Query: 5 NDDVFEAVKEVILSQLTSVK 24 D + + IL + T+ Sbjct: 4 TRDPYVILITEILLRRTTAG 23 >3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma} (A:38-84) Length = 47 Score = 24.5 bits (53), Expect = 5.5 Identities = 16/46 (34%), Positives = 23/46 (50%) Query: 23 VKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKI 68 V +E R E+ D LD VE V+ EE F + +P+E A+ Sbjct: 1 VTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNF 46 >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} (B:) Length = 310 Score = 24.4 bits (52), Expect = 6.2 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%) Query: 26 DQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVD 76 + V A+ E GAD + + ++ E A V DA+D Sbjct: 74 NDPVAWAKKCVEYGADIVAL--RLVSAHPDGQNRSGAELAEVCKAVADAID 122 >3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* (A:34-143) Length = 110 Score = 24.1 bits (52), Expect = 6.6 Identities = 4/20 (20%), Positives = 10/20 (50%) Query: 5 NDDVFEAVKEVILSQLTSVK 24 + D ++ ++ Q T V+ Sbjct: 3 DRDPYKVWVSEVMLQQTRVE 22 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.313 0.131 0.330 Gapped Lambda K H 0.267 0.0607 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 568,128 Number of extensions: 20933 Number of successful extensions: 135 Number of sequences better than 10.0: 1 Number of HSP's gapped: 134 Number of HSP's successfully gapped: 42 Length of query: 85 Length of database: 4,956,049 Length adjustment: 48 Effective length of query: 37 Effective length of database: 3,333,409 Effective search space: 123336133 Effective search space used: 123336133 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 50 (23.3 bits)