RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780534|ref|YP_003064947.1| acyl carrier protein
[Candidatus Liberibacter asiaticus str. psy62]
(85 letters)
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics
consortium, fatty acid biosynthesis, lipid synthesis,
phosphopantetheine; 1.90A {Toxoplasma gondii RH} (A:)
Length = 82
Score = 53.6 bits (129), Expect = 9e-09
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 1/77 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+ E VK+ +++ V +I + FI++L ADSLD VELVM FEEKF + IP+E A
Sbjct: 6 RPLLERVKD-VVADQLGVDRARINPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEEA 64
Query: 66 NKILTVKDAVDFIRKAK 82
+KI TV+DA+ +I KAK
Sbjct: 65 SKIATVQDALSYIEKAK 81
>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural
genomics, unknown function, PSI- 2, protein structure
initiative; NMR {Geobacter metallireducens gs-15} PDB:
2kjs_A* (A:1-63)
Length = 63
Score = 51.9 bits (125), Expect = 3e-08
Identities = 7/62 (11%), Positives = 19/62 (30%), Gaps = 1/62 (1%)
Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
+A+ + + + DSL + L++ E + ++
Sbjct: 2 PTLDALTPIFRQVF-DDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQ 60
Query: 67 KI 68
K+
Sbjct: 61 KL 62
>2amw_A Hypothetical protein NE2163; all helical protein,
structural genomics, PSI, protein structure initiative;
NMR {Nitrosomonas europaea} (A:)
Length = 83
Score = 51.6 bits (124), Expect = 3e-08
Identities = 16/80 (20%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 7 DVFEAVKEVILSQL-TSVKEDQIVESARFIEE-LGADSLDVVELVMIFEEKFSLEIPEE- 63
EAV+ ++ L ++ + S+ + DS+ VV ++ EE F + ++
Sbjct: 2 QHLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDE 61
Query: 64 -SANKILTVKDAVDFIRKAK 82
SA T+ F+
Sbjct: 62 ISAQTFETLGSLALFVEHKL 81
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome
P450 fold, carrier protein, 4-helix bundle, cytoplasm;
HET: ZMP HTG HEM; 2.00A {Escherichia coli} (A:)
Length = 97
Score = 51.1 bits (122), Expect = 5e-08
Identities = 36/77 (46%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+ E VK+ I+ + VK++++ +A F+E+LGADSLD VELVM EE+F EIP+E A
Sbjct: 21 STIEERVKK-IIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEA 79
Query: 66 NKILTVKDAVDFIRKAK 82
KI TV+ A+D+I +
Sbjct: 80 EKITTVQAAIDYINGHQ 96
>1x3o_A Acyl carrier protein; structural genomics, riken
structural genomics/proteomics initiative, RSGI,
NPPSFA; 1.50A {Thermus thermophilus HB8} (A:)
Length = 80
Score = 50.9 bits (122), Expect = 6e-08
Identities = 37/75 (49%), Positives = 54/75 (72%), Gaps = 1/75 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
++FE VK +++ V+ +++ ARFIE+LGADSLD VEL+M E++F LEI +E A
Sbjct: 4 QEIFEKVKA-VIADKLQVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEA 62
Query: 66 NKILTVKDAVDFIRK 80
KI TVKDAV++I+
Sbjct: 63 EKIRTVKDAVEYIKA 77
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A
{Bacillus subtilis} (D:)
Length = 81
Score = 50.5 bits (121), Expect = 8e-08
Identities = 35/77 (45%), Positives = 47/77 (61%), Gaps = 1/77 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
D E V + I+ V E + A F E+LGAD LDVVELVM E++F +EI +E A
Sbjct: 6 ADTLERVTK-IIVDRLGVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDA 64
Query: 66 NKILTVKDAVDFIRKAK 82
KI TV DAV++I+ +
Sbjct: 65 EKIATVGDAVNYIQNQQ 81
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis,
mitochondria, NADH:ubiquinone oxidereductase,
structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Length = 99
Score = 50.3 bits (120), Expect = 9e-08
Identities = 23/79 (29%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+ + + V +L + +++ ++ F+++LG DSLD VE++M E++F EIP+ A
Sbjct: 14 EGIQDRVLY-VLKLYDKIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIPDIDA 72
Query: 66 NKILTVKDAVDFIRKAKQT 84
K++ ++ VD+I K
Sbjct: 73 EKLMCPQEIVDYIADKKDV 91
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine,
fatty acid biosynthesis, lipid synthesis, transit
peptide, biosynthetic protein; HET: PNS; 1.80A
{Plasmodium falciparum} PDB: 3gzl_A* 2fq0_A* 2fq2_A*
(A:)
Length = 81
Score = 50.2 bits (120), Expect = 1e-07
Identities = 36/78 (46%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
F+ +K+ I+S+ SV+ED+I ++ F ++LGADSLD+VEL+M EEKF++ I ++ A
Sbjct: 4 KSTFDDIKK-IISKQLSVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDA 62
Query: 66 NKILTVKDAVDFIRKAKQ 83
KI TV+DA+D+I K +
Sbjct: 63 LKINTVQDAIDYIEKNNK 80
>3lmo_A Specialized acyl carrier protein; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; 2.00A {Rhodopseudomonas palustris} (A:)
Length = 101
Score = 49.5 bits (118), Expect = 1e-07
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
F+ V I+++ + + I + I++LG DSLD +++ ++ F +++P E
Sbjct: 3 STFDRVAT-IIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWT 61
Query: 67 KILTVKDAVDFIRKAKQT 84
+ + A +
Sbjct: 62 QEVNDGKATTEQYFVLKN 79
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase,
enoyl reductase, ketoacyl synthase, ketoacyl reductase;
3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* (A:40-205)
Length = 166
Score = 48.8 bits (116), Expect = 2e-07
Identities = 8/62 (12%), Positives = 24/62 (38%), Gaps = 1/62 (1%)
Query: 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
+A + ++ ++ +Q + +I S + +G S E++ ++F
Sbjct: 102 QDAPVTATDVIRALV-AQKLKKELTEIPPSKAIKDLVGGKSTLQNEILGDLGKEFGSTPE 160
Query: 62 EE 63
+
Sbjct: 161 KP 162
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle; NMR
{Lactobacillus casei} (A:)
Length = 80
Score = 49.0 bits (117), Expect = 2e-07
Identities = 14/80 (17%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 5 NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEES 64
++ + V + IL+ LT + + E DS+ V+L++ + +F ++ P
Sbjct: 2 DEAIKNGVLD-ILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVSE 60
Query: 65 --ANKILTVKDAVDFIRKAK 82
+ T + + +A+
Sbjct: 61 FDRKEWDTPNKIIAKVEQAQ 80
>2ehs_A ACP, acyl carrier protein; lipid transport, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 1.30A {Aquifex
aeolicus VF5} PDB: 2eht_A (A:)
Length = 77
Score = 49.0 bits (117), Expect = 2e-07
Identities = 36/74 (48%), Positives = 57/74 (77%), Gaps = 1/74 (1%)
Query: 8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANK 67
+ E VKE I+++ V++++I A+F+E+LGADSLDVVEL+M FEE+F +EIP+E A K
Sbjct: 2 LEERVKE-IIAEQLGVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEK 60
Query: 68 ILTVKDAVDFIRKA 81
I TV D ++++++
Sbjct: 61 IQTVGDVINYLKEK 74
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid
biosynthesis, lipid transport; HET: PSR; 1.20A
{Escherichia coli} (A:)
Length = 78
Score = 48.3 bits (115), Expect = 3e-07
Identities = 35/77 (45%), Positives = 53/77 (68%), Gaps = 1/77 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+ E VK+ I+ + VK++++ +A F+E+LGADSLD VELVM EE+F EIP+E A
Sbjct: 2 STIEERVKK-IIGEQLGVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEA 60
Query: 66 NKILTVKDAVDFIRKAK 82
K+ TV+ A+D+I +
Sbjct: 61 EKMTTVQAAIDYINGHQ 77
>2ava_A ACP I, acyl carrier protein I, chloroplast;
four-helix-bundle, biosynthetic protein; NMR {Spinacia
oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* (A:)
Length = 82
Score = 47.9 bits (114), Expect = 4e-07
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE 63
A + + V + I+ + ++ D +V + +LGADSLD VE+VM EE+F + + E+
Sbjct: 1 AKKETIDKVSD-IVKEKLALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDED 59
Query: 64 SANKILTVKDAVDFIRKAKQ 83
A I T++ A D I +
Sbjct: 60 KAQDISTIQQAADVIEGLLE 79
>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein;
four-helix bundle, ligand transport; NMR {Mycobacterium
tuberculosis H37RV} (A:)
Length = 115
Score = 47.4 bits (112), Expect = 8e-07
Identities = 22/76 (28%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+++ + E I+ ++T ++ +I F+++L DSL +VE+ + E+K+ ++IP+E
Sbjct: 6 EEIIAGIAE-IIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKIPDEDL 64
Query: 66 NKILTVKDAVDFIRKA 81
+ TV D V +I+K
Sbjct: 65 AGLRTVGDVVAYIQKL 80
>2cnr_A FAS, ACP, acyl carrier protein; polykdetide,
phosphopantetheine, lipid transport; NMR {Streptomyces
coelicolor} (A:)
Length = 82
Score = 46.8 bits (111), Expect = 9e-07
Identities = 20/77 (25%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+++ + E I++++ + + + F ++L DSL +VE+V+ EE+F ++IP++
Sbjct: 6 EEIVAGLAE-IVNEIAGIPVEDVKLDKSFTDDLDVDSLSMVEVVVAAEERFDVKIPDDDV 64
Query: 66 NKILTVKDAVDFIRKAK 82
+ TV DA +I +
Sbjct: 65 KNLKTVGDATKYILDHQ 81
>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG,
protein structure initiative, PSI, joint center for
structural genomics; 2.00A {Thermotoga maritima MSB8}
(A:)
Length = 100
Score = 44.5 bits (105), Expect = 5e-06
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+ E I S+ + + E F +ELG DS+DV++LV FE++F+L I +E
Sbjct: 16 KKLIAKFVE-IASEKXGKDLETVDEENTF-KELGFDSIDVIDLVXFFEDEFALRIEDEEI 73
Query: 66 NKILTVKDAVDFIRKA 81
+KI VKD +D + K
Sbjct: 74 SKIRKVKDLIDIVIKK 89
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport,
phosphopantetheine; 1.83A {Mycobacterium tuberculosis}
(A:)
Length = 113
Score = 44.6 bits (105), Expect = 5e-06
Identities = 16/76 (21%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+ EA+ + ++ +++LG DSL + +L+ E++F + I A
Sbjct: 25 GAMEEAINA-TIQRILRTDRGITANQ-VLVDDLGFDSLKLFQLITELEDEFDIAISFRDA 82
Query: 66 NKILTVKDAVDFIRKA 81
I TV D +
Sbjct: 83 QNIKTVGDVYTSVAVW 98
>1af8_A Actinorhodin polyketide synthase acyl carrier protein;
solution structure, structure, antibiotic biosynthesis;
NMR {Streptomyces coelicolor} (A:)
Length = 86
Score = 42.2 bits (99), Expect = 3e-05
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
DD+ A+ E + RF E++G DSL ++E E ++ + IP++ A
Sbjct: 8 DDLRRALVE-CAGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYGVSIPDDVA 65
Query: 66 NKILTVKDAVDFIRKA 81
++ T ++ +D I A
Sbjct: 66 GRVDTPRELLDLINGA 81
>2ju1_A Erythronolide synthase; carrier protein domain, modular
polyketide synthase, alpha- helical bundle,
acyltransferase; NMR {Saccharopolyspora erythraea} PDB:
2ju2_A (A:)
Length = 95
Score = 41.4 bits (97), Expect = 4e-05
Identities = 13/74 (17%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
++ V+ + + + + V + +ELG DSL V L + L +P
Sbjct: 19 AELVRLVRT-STATVLGHDDPKAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTLV 77
Query: 66 NKILTVKDAVDFIR 79
F+
Sbjct: 78 FDHPNASAVAGFLD 91
>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein;
solution structure, dynamics, ACP, biosynthetic
protein; NMR {Streptomyces rimosus} (A:)
Length = 95
Score = 39.2 bits (91), Expect = 2e-04
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
D+ ++E + S+ VE F + LG DSL ++ V E + +++ +++
Sbjct: 7 SDLLTLLRE-CAGEEESIDLGGDVEDVAF-DALGYDSLALLNTVGRIERDYGVQLGDDAV 64
Query: 66 NKILTVKDAVDFIRKA 81
K T + ++ +
Sbjct: 65 EKATTPRALIEMTNAS 80
>2afd_A Protein ASL1650; twisted antiparallel helical bundle, acyl
carrier protein family, structural genomics, PSI,
protein structure initiative; NMR {Nostoc SP} PDB:
2afe_A (A:)
Length = 88
Score = 38.7 bits (90), Expect = 3e-04
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+D+ + + +Q V D I F + +S + L+ E+ E+
Sbjct: 13 EDIQSWLID-QFAQQLDVDPDDIDMEESF-DNYDLNSSKALILLGRLEKWLGKELNPVLI 70
Query: 66 NKILTVKDAVDFIRK 80
T+ + +
Sbjct: 71 FNYPTIAQLAKRLGE 85
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown
function, ATC, structural genomics, PSI-2, protein
structure initiative; NMR {Agrobacterium tumefaciens}
(A:)
Length = 105
Score = 38.0 bits (88), Expect = 4e-04
Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 2/80 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEES- 64
+ ++E++ + + G S V+L++ EE F +E P+
Sbjct: 21 GHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLL 80
Query: 65 -ANKILTVKDAVDFIRKAKQ 83
++K D ++
Sbjct: 81 NRKSFASIKAIEDTVKLILD 100
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor,
protein backbone fold, lipid binding protein; NMR
{Rhizobium leguminosarum} (A:)
Length = 92
Score = 37.5 bits (87), Expect = 6e-04
Identities = 15/78 (19%), Positives = 33/78 (42%), Gaps = 2/78 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+ + VK + TSV +I LG DSL + +++ E+ + ++I +A
Sbjct: 11 SAINKLVKA-ENGERTSVALGEITTDTEL-TSLGIDSLGLADVLWDLEQLYGIKIEMNTA 68
Query: 66 NKILTVKDAVDFIRKAKQ 83
+ + + D + +
Sbjct: 69 DAWSNLNNIGDVVEAVRG 86
>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo,
polyketide synthase, PKS, biosynthetic protein; NMR
{Streptomyces roseofulvus} (A:)
Length = 83
Score = 35.6 bits (82), Expect = 0.003
Identities = 11/77 (14%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 7 DVFEAVKEVILSQL--TSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEES 64
+ +K+++ + F +LG DSL ++E + ++++ + + +E+
Sbjct: 4 LTVDDLKKLLAETAGEDDSVDLAGELDTPF-VDLGYDSLALLETAAVLQQRYGIALTDET 62
Query: 65 ANKILTVKDAVDFIRKA 81
++ T ++ +D +
Sbjct: 63 VGRLGTPRELLDEVNTT 79
>2cg5_B Fatty acid synthase; transferase/hydrolase,
transferase/hydrolase (complex), fatty acid
biosynthesis, phosphopantetheine transferase, FAsn,
ACP; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A (B:)
Length = 91
Score = 26.1 bits (57), Expect = 1.7
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 16 ILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
++ + +++ V + +LG D+L VE+ E + +L +
Sbjct: 14 AVAHILGIRDLAAVNLDSSLADLGLDALMSVEVRQTLERELNLVLS 59
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base
excision repair, hydrolase; HET: KCX; 1.64A
{Helicobacter pylori} (A:23-145)
Length = 123
Score = 25.7 bits (56), Expect = 2.2
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 5/37 (13%)
Query: 5 NDDVFEAVKEVILSQLTSVKEDQIVESA--RFIEELG 39
N FEA+ +L+Q T + V +
Sbjct: 5 NALKFEALLGAVLTQNTKFEA---VLKSLENLKNAFI 38
>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme,
metal binding protein, structural genomics, NPPSFA;
2.21A {Pyrococcus horikoshii} (A:)
Length = 342
Score = 25.8 bits (55), Expect = 2.3
Identities = 2/25 (8%), Positives = 8/25 (32%)
Query: 25 EDQIVESARFIEELGADSLDVVELV 49
+ A+ I + ++ +
Sbjct: 251 MHSPEKYAKLILKARPMFVEAKAYM 275
>2z2u_A UPF0026 protein MJ0257; metal binding protein; 2.40A
{Methanocaldococcus jannaschii} (A:)
Length = 311
Score = 25.4 bits (54), Expect = 2.7
Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 10 EAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKIL 69
E + I + L D I++ E +++ + + + +L
Sbjct: 214 EKKRTCIRTTLIRGYNDDILKFVELYERADVHFIELKSYMHVGYSQK-----RLKKEDML 268
Query: 70 TVKDAVDFIRKAKQ 83
+ + + +
Sbjct: 269 QHDEILKLAKMLDE 282
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA
glycosylase, DNA mismatch, methylation, base twisting,
hydrolase; 2.00A
{Methanothermobacterthermautotrophicus} (A:29-139)
Length = 111
Score = 24.5 bits (53), Expect = 4.7
Identities = 4/20 (20%), Positives = 8/20 (40%)
Query: 5 NDDVFEAVKEVILSQLTSVK 24
D + + IL + T+
Sbjct: 4 TRDPYVILITEILLRRTTAG 23
>3ce7_A Specific mitochodrial acyl carrier protein; malaria,
mitochondrial, ACP, fatty acid biosynthesis, lipid
synthesis, phosphopantetheine; 1.64A {Toxoplasma}
(A:38-84)
Length = 47
Score = 24.5 bits (53), Expect = 5.5
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 23 VKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKI 68
V +E R E+ D LD VE V+ EE F + +P+E A+
Sbjct: 1 VTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVPDEVADNF 46
>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein;
heterodimer, beta-alpha-barrels, oxidoreductase; HET:
B12; 1.90A {Carboxydothermus hydrogenoformans} (B:)
Length = 310
Score = 24.4 bits (52), Expect = 6.2
Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 2/51 (3%)
Query: 26 DQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVD 76
+ V A+ E GAD + + ++ E A V DA+D
Sbjct: 74 NDPVAWAKKCVEYGADIVAL--RLVSAHPDGQNRSGAELAEVCKAVADAID 122
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA
glycosylase, transition state analog, DNA repair; HET:
NRI; 2.20A {Geobacillus stearothermophilus} PDB:
3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* (A:34-143)
Length = 110
Score = 24.1 bits (52), Expect = 6.6
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 5 NDDVFEAVKEVILSQLTSVK 24
+ D ++ ++ Q T V+
Sbjct: 3 DRDPYKVWVSEVMLQQTRVE 22
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.313 0.131 0.330
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 568,128
Number of extensions: 20933
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 42
Length of query: 85
Length of database: 4,956,049
Length adjustment: 48
Effective length of query: 37
Effective length of database: 3,333,409
Effective search space: 123336133
Effective search space used: 123336133
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.3 bits)