RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780534|ref|YP_003064947.1| acyl carrier protein
[Candidatus Liberibacter asiaticus str. psy62]
         (85 letters)



>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura
          genomics center for infectious disease, ssgcid, lipid
          bindi protein; NMR {Borrelia burgdorferi}
          Length = 84

 Score = 66.2 bits (162), Expect = 2e-12
 Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 1/78 (1%)

Query: 5  NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEES 64
          ND++F  V+ +I  QL   KED+I   +RF+E+L ADSLD+ EL+ + EE F  +IPE  
Sbjct: 7  NDEIFSKVRSIISEQL-DKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENE 65

Query: 65 ANKILTVKDAVDFIRKAK 82
          AN+  TV D V+FI+K K
Sbjct: 66 ANEFETVGDVVNFIKKRK 83


>2l4b_A Acyl carrier protein; infectious disease, human granulocytic
          anaplasmosis, ssgcid, structural genomics; NMR
          {Anaplasma phagocytophilum}
          Length = 88

 Score = 61.0 bits (148), Expect = 6e-11
 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%)

Query: 5  NDDVFEAVKEVILSQL--TSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPE 62
          ++++   V E ++  L     ++  +  +    ++   DSLD V+L+M  EE+FSLEI +
Sbjct: 6  SEEIKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISD 65

Query: 63 ESANKILTVKDAVDFIRK 80
          E A K+ TV D   +I  
Sbjct: 66 EDAQKLETVDDICRYIAS 83


>2l3v_A ACP, acyl carrier protein; structural genomi seattle structural
          genomics center for infectious disease, lipid binding
          protein; NMR {Brucella melitensis}
          Length = 79

 Score = 60.4 bits (147), Expect = 9e-11
 Identities = 42/76 (55%), Positives = 55/76 (72%), Gaps = 1/76 (1%)

Query: 7  DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
          D  E VK++++  L  V  D++ E A FI++LGADSLD VELVM FEE+F +EIP+++A 
Sbjct: 4  DTAERVKKIVVEHL-GVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAE 62

Query: 67 KILTVKDAVDFIRKAK 82
           ILTV DAV FI KA 
Sbjct: 63 TILTVGDAVKFIDKAS 78


>1klp_A ACP, ACPM, meromycolate extension acyl carrier protein;
          four-helix bundle, ligand transport; NMR {Mycobacterium
          tuberculosis H37RV} SCOP: a.28.1.1
          Length = 115

 Score = 60.0 bits (145), Expect = 1e-10
 Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 1/85 (1%)

Query: 1  MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60
          MP   +++   + E I+ ++T ++  +I     F+++L  DSL +VE+ +  E+K+ ++I
Sbjct: 1  MPVTQEEIIAGIAE-IIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKI 59

Query: 61 PEESANKILTVKDAVDFIRKAKQTN 85
          P+E    + TV D V +I+K ++ N
Sbjct: 60 PDEDLAGLRTVGDVVAYIQKLEEEN 84


>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus
          subtilis} SCOP: a.28.1.1 PDB: 1hy8_A
          Length = 81

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%)

Query: 2  PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
          P  + D  E V ++I+ +L  V E  +   A F E+LGAD LDVVELVM  E++F +EI 
Sbjct: 2  PLGSADTLERVTKIIVDRL-GVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEIS 60

Query: 62 EESANKILTVKDAVDFIRKAK 82
          +E A KI TV DAV++I+  +
Sbjct: 61 DEDAEKIATVGDAVNYIQNQQ 81


>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria,
          NADH:ubiquinone oxidereductase, structural genomics,
          NPPSFA; NMR {Homo sapiens}
          Length = 99

 Score = 57.3 bits (138), Expect = 9e-10
 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 1/81 (1%)

Query: 2  PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
          P   + + + V  V+      +  +++  ++ F+++LG DSLD VE++M  E++F  EIP
Sbjct: 10 PLTLEGIQDRVLYVLKLYD-KIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIP 68

Query: 62 EESANKILTVKDAVDFIRKAK 82
          +  A K++  ++ VD+I   K
Sbjct: 69 DIDAEKLMCPQEIVDYIADKK 89


>3ce7_A Specific mitochodrial acyl carrier protein; malaria,
          mitochondrial, ACP, fatty acid biosynthesis, lipid
          synthesis, phosphopantetheine; 1.64A {Toxoplasma}
          Length = 107

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 22/82 (26%), Positives = 38/82 (46%)

Query: 2  PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
           NA  +    + +  L +   V     +E  R  E+   D LD VE V+  EE F + +P
Sbjct: 17 INAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVP 76

Query: 62 EESANKILTVKDAVDFIRKAKQ 83
          +E A+   T+++  DF+   + 
Sbjct: 77 DEVADNFQTLQEIADFVVSERA 98


>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid
          biosynthesis, lipid transport; HET: PSR; 1.20A
          {Escherichia coli} SCOP: a.28.1.1 PDB: 1l0h_A 2fhs_C
          1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A
          2k94_A
          Length = 78

 Score = 55.6 bits (134), Expect = 3e-09
 Identities = 37/76 (48%), Positives = 54/76 (71%), Gaps = 1/76 (1%)

Query: 7  DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
           + E VK++I  QL  VK++++  +A F+E+LGADSLD VELVM  EE+F  EIP+E A 
Sbjct: 3  TIEERVKKIIGEQL-GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAE 61

Query: 67 KILTVKDAVDFIRKAK 82
          K+ TV+ A+D+I   +
Sbjct: 62 KMTTVQAAIDYINGHQ 77


>2kw2_A Specialized acyl carrier protein; structural genomics, northeast
          structural genomics consortiu PSI-2, protein structure
          initiative; NMR {Rhodopseudomonas palustris} PDB:
          3lmo_A
          Length = 101

 Score = 54.5 bits (131), Expect = 6e-09
 Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 7  DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
            F+ V   I+++   +  + I   +  I++LG DSLD +++    ++ F +++P E   
Sbjct: 3  STFDRVAT-IIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWT 61

Query: 67 KILTVKDAVDFIRKAKQ 83
          + +    A        +
Sbjct: 62 QEVNDGKATTEQYFVLK 78


>3lmo_A Specialized acyl carrier protein; alpha-beta protein, structural
          genomics, PSI-2, protein structure initiative; 2.00A
          {Rhodopseudomonas palustris}
          Length = 101

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 7  DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
            F+ V   I+++   +  + I   +  I++LG DSLD +++    ++ F +++P E   
Sbjct: 3  STFDRVAT-IIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWT 61

Query: 67 KILTVKDAVDFI 78
          + +    A    
Sbjct: 62 QEVNDGKATTEQ 73


>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450
          fold, carrier protein, 4-helix bundle, cytoplasm; HET:
          ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1
          PDB: 3ejd_A* 3eje_A*
          Length = 97

 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 1/77 (1%)

Query: 6  DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
            + E VK++I  QL  VK++++  +A F+E+LGADSLD VELVM  EE+F  EIP+E A
Sbjct: 21 STIEERVKKIIGEQL-GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEA 79

Query: 66 NKILTVKDAVDFIRKAK 82
           KI TV+ A+D+I   +
Sbjct: 80 EKITTVQAAIDYINGHQ 96


>2amw_A Hypothetical protein NE2163; all helical protein, structural
          genomics, PSI, protein structure initiative; NMR
          {Nitrosomonas europaea}
          Length = 83

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 7  DVFEAVKEVILSQL-TSVKEDQIV-ESARFIEELGADSLDVVELVMIFEEKFSLEIPEE- 63
             EAV+ ++   L    ++  +   S         DS+ VV ++   EE F   + ++ 
Sbjct: 2  QHLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDE 61

Query: 64 -SANKILTVKDAVDFIRK 80
           SA    T+     F+  
Sbjct: 62 ISAQTFETLGSLALFVEH 79


>1nq4_A Oxytetracycline polyketide synthase acyl carrier protein;
          solution structure, dynamics, ACP, biosynthetic
          protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1
          Length = 95

 Score = 48.7 bits (116), Expect = 3e-07
 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 6  DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
           D+   ++E    +  S+     VE   F + LG DSL ++  V   E  + +++ +++ 
Sbjct: 7  SDLLTLLRE-CAGEEESIDLGGDVEDVAF-DALGYDSLALLNTVGRIERDYGVQLGDDAV 64

Query: 66 NKILTVKDAVDFIRKA 81
           K  T +  ++    +
Sbjct: 65 EKATTPRALIEMTNAS 80


>2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle,
          biosynthetic protein; NMR {Spinacia oleracea} PDB:
          2fva_A* 2fve_A 2fvf_A*
          Length = 82

 Score = 48.4 bits (115), Expect = 4e-07
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 4  ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE 63
          A  +  + V +++  +L ++  D +V +     +LGADSLD VE+VM  EE+F + + E+
Sbjct: 1  AKKETIDKVSDIVKEKL-ALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDED 59

Query: 64 SANKILTVKDAVDFIRKAKQ 83
           A  I T++ A D I    +
Sbjct: 60 KAQDISTIQQAADVIEGLLE 79


>2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural
          genomics, unknown function, PSI- 2, protein structure
          initiative; NMR {Geobacter metallireducens gs-15} PDB:
          2kjs_A*
          Length = 87

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 8  VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANK 67
            +A+   I  Q+       +       +    DSL  + L++  E  + ++       K
Sbjct: 3  TLDALTP-IFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQK 61

Query: 68 ILTVKDAVDFIRK 80
          +  V D  D + K
Sbjct: 62 LKNVGDLADLVDK 74


>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty
          acid biosynthesis, lipid synthesis, transit peptide,
          biosynthetic protein; HET: PNS; 1.80A {Plasmodium
          falciparum} PDB: 3gzl_A* 2fq0_A* 2fq2_A*
          Length = 81

 Score = 46.9 bits (111), Expect = 1e-06
 Identities = 37/78 (47%), Positives = 57/78 (73%), Gaps = 1/78 (1%)

Query: 6  DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
             F+ +K++I  QL SV+ED+I  ++ F ++LGADSLD+VEL+M  EEKF++ I ++ A
Sbjct: 4  KSTFDDIKKIISKQL-SVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDA 62

Query: 66 NKILTVKDAVDFIRKAKQ 83
           KI TV+DA+D+I K  +
Sbjct: 63 LKINTVQDAIDYIEKNNK 80


>2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics,
          NPPSFA, national project on protein structural and
          functional analyses; 1.30A {Aquifex aeolicus VF5} PDB:
          2eht_A
          Length = 77

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 38/73 (52%), Positives = 57/73 (78%), Gaps = 1/73 (1%)

Query: 8  VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANK 67
          + E VKE+I  QL  V++++I   A+F+E+LGADSLDVVEL+M FEE+F +EIP+E A K
Sbjct: 2  LEERVKEIIAEQL-GVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEK 60

Query: 68 ILTVKDAVDFIRK 80
          I TV D ++++++
Sbjct: 61 IQTVGDVINYLKE 73


>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle; NMR
          {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
          Length = 80

 Score = 46.1 bits (109), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 3/81 (3%)

Query: 4  ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP-- 61
          A++ +   V + IL+ LT   + +        E    DS+  V+L++  + +F ++ P  
Sbjct: 1  ADEAIKNGVLD-ILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVS 59

Query: 62 EESANKILTVKDAVDFIRKAK 82
          E    +  T    +  + +A+
Sbjct: 60 EFDRKEWDTPNKIIAKVEQAQ 80


>2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine,
          lipid transport; NMR {Streptomyces coelicolor}
          Length = 82

 Score = 45.2 bits (106), Expect = 3e-06
 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%)

Query: 1  MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60
          M    +++   + E++        ED  ++ +   ++L  DSL +VE+V+  EE+F ++I
Sbjct: 1  MAATQEEIVAGLAEIVNEIAGIPVEDVKLDKSFT-DDLDVDSLSMVEVVVAAEERFDVKI 59

Query: 61 PEESANKILTVKDAVDFIRKAK 82
          P++    + TV DA  +I   +
Sbjct: 60 PDDDVKNLKTVGDATKYILDHQ 81


>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics
          consortium, fatty acid biosynthesis, lipid synthesis,
          phosphopantetheine; 1.90A {Toxoplasma gondii RH}
          Length = 82

 Score = 45.1 bits (106), Expect = 4e-06
 Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 1/78 (1%)

Query: 5  NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEES 64
          +  + E VK+V+  QL   +       + FI++L ADSLD VELVM FEEKF + IP+E 
Sbjct: 5  DRPLLERVKDVVADQLGVDRARI-NPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEE 63

Query: 65 ANKILTVKDAVDFIRKAK 82
          A+KI TV+DA+ +I KAK
Sbjct: 64 ASKIATVQDALSYIEKAK 81


>1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo,
          polyketide synthase, PKS, biosynthetic protein; NMR
          {Streptomyces roseofulvus} SCOP: a.28.1.1
          Length = 83

 Score = 44.8 bits (106), Expect = 4e-06
 Identities = 12/75 (16%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 8  VFEAVKEVILSQL-TSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
            + +K+++          D   E      +LG DSL ++E   + ++++ + + +E+  
Sbjct: 5  TVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVG 64

Query: 67 KILTVKDAVDFIRKA 81
          ++ T ++ +D +   
Sbjct: 65 RLGTPRELLDEVNTT 79


>1x3o_A Acyl carrier protein; structural genomics, riken structural
          genomics/proteomics initiative, RSGI, NPPSFA; 1.50A
          {Thermus thermophilus HB8}
          Length = 80

 Score = 44.7 bits (105), Expect = 4e-06
 Identities = 40/75 (53%), Positives = 55/75 (73%), Gaps = 1/75 (1%)

Query: 6  DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
           ++FE VK VI  +L  V+ +++   ARFIE+LGADSLD VEL+M  E++F LEI +E A
Sbjct: 4  QEIFEKVKAVIADKL-QVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEA 62

Query: 66 NKILTVKDAVDFIRK 80
           KI TVKDAV++I+ 
Sbjct: 63 EKIRTVKDAVEYIKA 77


>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport,
          phosphopantetheine; 1.83A {Mycobacterium tuberculosis}
          Length = 113

 Score = 44.4 bits (104), Expect = 7e-06
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 11 AVKEVILSQLTSVKEDQ--IVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKI 68
          A++E I + +  +      I  +   +++LG DSL + +L+   E++F + I    A  I
Sbjct: 26 AMEEAINATIQRILRTDRGITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNI 85

Query: 69 LTVKDAVDFI 78
           TV D    +
Sbjct: 86 KTVGDVYTSV 95


>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown
           function, ATC, structural genomics, PSI-2, protein
           structure initiative; NMR {Agrobacterium tumefaciens}
           SCOP: a.28.1.1
          Length = 105

 Score = 43.8 bits (103), Expect = 9e-06
 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 6   DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
             +   ++E++            +     +   G  S   V+L++  EE F +E P+   
Sbjct: 21  GHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLL 80

Query: 66  NK-----ILTVKDAVDFIRKAKQ 83
           N+     I  ++D V  I   K+
Sbjct: 81  NRKSFASIKAIEDTVKLILDGKE 103


>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein
          backbone fold, lipid binding protein; NMR {Rhizobium
          leguminosarum} SCOP: i.11.1.1
          Length = 92

 Score = 42.5 bits (100), Expect = 3e-05
 Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 4/80 (5%)

Query: 6  DDVFEAVKEV---ILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPE 62
           ++  A+ ++      + TSV   +I         LG DSL + +++   E+ + ++I  
Sbjct: 7  LEIISAINKLVKAENGERTSVALGEITTDTEL-TSLGIDSLGLADVLWDLEQLYGIKIEM 65

Query: 63 ESANKILTVKDAVDFIRKAK 82
           +A+    + +  D +   +
Sbjct: 66 NTADAWSNLNNIGDVVEAVR 85


>1af8_A Actinorhodin polyketide synthase acyl carrier protein; solution
          structure, structure, antibiotic biosynthesis; NMR
          {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A
          2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A*
          2kgd_A* 2kge_A*
          Length = 86

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)

Query: 6  DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
          DD+  A+ E    +             RF E++G DSL ++E     E ++ + IP++ A
Sbjct: 8  DDLRRALVEC-AGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYGVSIPDDVA 65

Query: 66 NKILTVKDAVDFIRKA 81
           ++ T ++ +D I  A
Sbjct: 66 GRVDTPRELLDLINGA 81


>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier
          protein, holo, phosphopantetheine, transport protein;
          HET: PNS; NMR {Aspergillus parasiticus}
          Length = 89

 Score = 40.4 bits (95), Expect = 9e-05
 Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 4  ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE 63
           +++  +AV   ++S+ + +  +++ + + F  ++G DSL  + +   F E   L++  E
Sbjct: 8  VSNEKLDAVMR-VVSEESGIALEELTDDSNF-ADMGIDSLSSMVIGSRFREDLGLDLGPE 65

Query: 64 SAN--KILTVKDAVDFI 78
           +      TV+   DF+
Sbjct: 66 FSLFIDCTTVRALKDFM 82


>1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, protein
          structure initiative, PSI, joint center for structural
          genomics; 2.00A {Thermotoga maritima MSB8} SCOP:
          a.28.1.1
          Length = 100

 Score = 35.4 bits (81), Expect = 0.003
 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)

Query: 6  DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
            +     E I S+      + + E   F +ELG DS+DV++LVM FE++F+L I +E  
Sbjct: 16 KKLIAKFVE-IASEKMGKDLETVDEENTF-KELGFDSIDVIDLVMFFEDEFALRIEDEEI 73

Query: 66 NKILTVKDAVDFIRK 80
          +KI  VKD +D + K
Sbjct: 74 SKIRKVKDLIDIVIK 88


>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
            megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
            PDB: 2vz9_A*
          Length = 2512

 Score = 33.6 bits (76), Expect = 0.011
 Identities = 10/45 (22%), Positives = 22/45 (48%)

Query: 17   LSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
            ++ +  +++   +     + +LG DSL  VE+  I E +  L + 
Sbjct: 2132 VAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLS 2176


>2roq_A Enterobactin synthetase component F; T-TE, PCP, thioesterase,
          peptidyl carrier protein, thiolation domain,
          non-ribosomal peptide synthetase; NMR {Escherichia
          coli}
          Length = 343

 Score = 28.4 bits (62), Expect = 0.37
 Identities = 4/25 (16%), Positives = 11/25 (44%)

Query: 37 ELGADSLDVVELVMIFEEKFSLEIP 61
           LG  +L  ++L      + + ++ 
Sbjct: 43 ALGGHALLAMKLAAQLSRQVARQVT 67


>3dtb_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP];
           gluconeogenesis, lyase, cytoplasm, decarboxylase,
           GTP-binding, nucleotide-binding; HET: GDP 1PE EPE; 1.30A
           {Rattus norvegicus} PDB: 2qey_A* 2qf1_A* 2qew_A* 2rk7_A
           2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A*
           3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* 1nhx_A*
           2gmv_A*
          Length = 624

 Score = 28.3 bits (63), Expect = 0.44
 Identities = 7/63 (11%), Positives = 25/63 (39%), Gaps = 13/63 (20%)

Query: 1   MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60
           +P  +    + + +V + +L  + ++   +    I++               E++ + ++
Sbjct: 560 VPKEDALNLKGLGDVNVEELFGISKEFWEKEVEEIDKY-------------LEDQVNADL 606

Query: 61  PEE 63
           P E
Sbjct: 607 PYE 609


>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein,
            ligase phosphoprotein, termination module,
            phosphopantetheine; 2.6A {Bacillus subtilis}
          Length = 1304

 Score = 27.4 bits (60), Expect = 0.78
 Identities = 5/45 (11%), Positives = 19/45 (42%)

Query: 37   ELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA 81
             LG  +L  +      +++  +++P +   +  T+     +++  
Sbjct: 998  ALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNG 1042


>2cg5_B Fatty acid synthase; transferase/hydrolase, transferase/hydrolase
          (complex), fatty acid biosynthesis, phosphopantetheine
          transferase, FAsn, ACP; HET: COA; 2.7A {Homo sapiens}
          PDB: 2png_A
          Length = 91

 Score = 27.2 bits (60), Expect = 0.88
 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 7  DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
          D    + E +   L       +   +   + LG D+L  VE+    E + +L + 
Sbjct: 6  DSQRDLVEAVAHILGIRDLAAVNLDSSLAD-LGLDALMSVEVRQTLERELNLVLS 59


>2i7g_A Monooxygenase, AGR_C_4197P; alpha-beta, TIM barrel, helix-bundle,
          structural genomics, PSI-2, protein structure
          initiative; HET: MSE; 1.73A {Agrobacterium tumefaciens
          str}
          Length = 376

 Score = 27.3 bits (59), Expect = 0.92
 Identities = 4/22 (18%), Positives = 11/22 (50%)

Query: 26 DQIVESARFIEELGADSLDVVE 47
           +++E     +++G D   + E
Sbjct: 49 RELLEEIELADQVGLDVFGLGE 70


>1z69_A COG2141, coenzyme F420-dependent N(5),N(10)-
          methylenetetrahydromethanopterin reductase; (alpha,
          beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A
          {Methanosarcina barkeri}
          Length = 327

 Score = 26.7 bits (57), Expect = 1.4
 Identities = 5/22 (22%), Positives = 11/22 (50%)

Query: 26 DQIVESARFIEELGADSLDVVE 47
           +I   A+  E+ G D + + +
Sbjct: 14 LKIAYYAKLSEQQGFDHVWITD 35


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
           acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 1688

 Score = 26.7 bits (58), Expect = 1.4
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 15/78 (19%)

Query: 5   NDDVFEAVKEVILSQ-LTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE 63
           N +  E ++EVI+ + L   +  +  E+A   +    D +D+             EIPE 
Sbjct: 916 NPEKKEMIQEVIVEEDLEPFEASK--ETAEQFKHQHGDKVDI------------FEIPET 961

Query: 64  SANKILTVKDAVDFIRKA 81
               +  +K A  +I KA
Sbjct: 962 GEYSVKLLKGATLYIPKA 979


>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle,
           phosphorylation, ATP- binding, cell division, disease
           mutation, kinase, nucleotide-binding; 3.00A {Homo
           sapiens}
          Length = 308

 Score = 26.7 bits (58), Expect = 1.5
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 10  EAVKEV-ILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKI 68
             V+EV +L +L + +   +V           D    V LV    ++      +++    
Sbjct: 57  STVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPG 116

Query: 69  LTVKDAVDFIR 79
           L  +   D +R
Sbjct: 117 LPAETIKDLMR 127


>3c8n_A Probable F420-dependent glucose-6-phosphate dehydrogenase FGD1;
          TIM barrel, non-prolyl CIS-peptide, oxidoreductase;
          1.90A {Mycobacterium tuberculosis H37RV} PDB: 3b4y_A
          Length = 356

 Score = 25.8 bits (55), Expect = 2.4
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 26 DQIVESARFIEELGADSLDVVE 47
           ++VE A   E  G DS  V +
Sbjct: 38 RELVELAVAAEAHGMDSATVSD 59


>2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic
          biosynthesis, condensation domain, peptide bond
          formation, ligase, antibiotics; 1.85A {Brevibacillus
          brevis}
          Length = 520

 Score = 25.8 bits (55), Expect = 2.7
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 37 ELGADSLDVVELVMIFEEKFSLEIP 61
           LG  SL  + ++     ++ ++IP
Sbjct: 36 ALGGHSLRAMRVLSSMHNEYQVDIP 60


>1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio
          harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A
          3fgc_B*
          Length = 324

 Score = 25.2 bits (54), Expect = 3.9
 Identities = 6/22 (27%), Positives = 17/22 (77%)

Query: 26 DQIVESARFIEELGADSLDVVE 47
          ++++++A ++++L  D+L V E
Sbjct: 22 EEMLDTAHYVDQLKFDTLAVYE 43


>2wgk_A 3,6-diketocamphane 1,6 monooxygenase; camphor pathway,
          oxidoreductase; 2.00A {Pseudomonas putida}
          Length = 378

 Score = 24.8 bits (53), Expect = 5.2
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 26 DQIVESARFIEELGADSL 43
          D  ++SA   + +G DS+
Sbjct: 24 DWGIKSAVQADSVGIDSM 41


>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer,
           lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB:
           2fah_A* 2qzy_A*
          Length = 608

 Score = 24.0 bits (52), Expect = 8.3
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 13/63 (20%)

Query: 1   MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60
           +P   D     +  V  SQL  +++    E  R + E              + E F  ++
Sbjct: 544 VPKEGDLDLGGLPGVDYSQLFPMEKGFWEEECRQLREY-------------YGENFGADL 590

Query: 61  PEE 63
           P +
Sbjct: 591 PRD 593


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.313    0.131    0.330 

Gapped
Lambda     K      H
   0.267   0.0492    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 656,179
Number of extensions: 25934
Number of successful extensions: 153
Number of sequences better than 10.0: 1
Number of HSP's gapped: 147
Number of HSP's successfully gapped: 57
Length of query: 85
Length of database: 5,693,230
Length adjustment: 53
Effective length of query: 32
Effective length of database: 4,408,298
Effective search space: 141065536
Effective search space used: 141065536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.6 bits)