RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780534|ref|YP_003064947.1| acyl carrier protein [Candidatus Liberibacter asiaticus str. psy62] (85 letters) >2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi} Length = 84 Score = 66.2 bits (162), Expect = 2e-12 Identities = 38/78 (48%), Positives = 53/78 (67%), Gaps = 1/78 (1%) Query: 5 NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEES 64 ND++F V+ +I QL KED+I +RF+E+L ADSLD+ EL+ + EE F +IPE Sbjct: 7 NDEIFSKVRSIISEQL-DKKEDEITTDSRFVEDLNADSLDIYELLYLLEEAFDDKIPENE 65 Query: 65 ANKILTVKDAVDFIRKAK 82 AN+ TV D V+FI+K K Sbjct: 66 ANEFETVGDVVNFIKKRK 83 >2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum} Length = 88 Score = 61.0 bits (148), Expect = 6e-11 Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 2/78 (2%) Query: 5 NDDVFEAVKEVILSQL--TSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPE 62 ++++ V E ++ L ++ + + ++ DSLD V+L+M EE+FSLEI + Sbjct: 6 SEEIKAQVMESVIGCLKLNDEQKQILSGTTNLAKDFNLDSLDFVDLIMSLEERFSLEISD 65 Query: 63 ESANKILTVKDAVDFIRK 80 E A K+ TV D +I Sbjct: 66 EDAQKLETVDDICRYIAS 83 >2l3v_A ACP, acyl carrier protein; structural genomi seattle structural genomics center for infectious disease, lipid binding protein; NMR {Brucella melitensis} Length = 79 Score = 60.4 bits (147), Expect = 9e-11 Identities = 42/76 (55%), Positives = 55/76 (72%), Gaps = 1/76 (1%) Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66 D E VK++++ L V D++ E A FI++LGADSLD VELVM FEE+F +EIP+++A Sbjct: 4 DTAERVKKIVVEHL-GVDADKVTEGASFIDDLGADSLDTVELVMAFEEEFGVEIPDDAAE 62 Query: 67 KILTVKDAVDFIRKAK 82 ILTV DAV FI KA Sbjct: 63 TILTVGDAVKFIDKAS 78 >1klp_A ACP, ACPM, meromycolate extension acyl carrier protein; four-helix bundle, ligand transport; NMR {Mycobacterium tuberculosis H37RV} SCOP: a.28.1.1 Length = 115 Score = 60.0 bits (145), Expect = 1e-10 Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60 MP +++ + E I+ ++T ++ +I F+++L DSL +VE+ + E+K+ ++I Sbjct: 1 MPVTQEEIIAGIAE-IIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKI 59 Query: 61 PEESANKILTVKDAVDFIRKAKQTN 85 P+E + TV D V +I+K ++ N Sbjct: 60 PDEDLAGLRTVGDVVAYIQKLEEEN 84 >1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 1hy8_A Length = 81 Score = 59.1 bits (143), Expect = 2e-10 Identities = 37/81 (45%), Positives = 52/81 (64%), Gaps = 1/81 (1%) Query: 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61 P + D E V ++I+ +L V E + A F E+LGAD LDVVELVM E++F +EI Sbjct: 2 PLGSADTLERVTKIIVDRL-GVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEIS 60 Query: 62 EESANKILTVKDAVDFIRKAK 82 +E A KI TV DAV++I+ + Sbjct: 61 DEDAEKIATVGDAVNYIQNQQ 81 >2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 Score = 57.3 bits (138), Expect = 9e-10 Identities = 24/81 (29%), Positives = 47/81 (58%), Gaps = 1/81 (1%) Query: 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61 P + + + V V+ + +++ ++ F+++LG DSLD VE++M E++F EIP Sbjct: 10 PLTLEGIQDRVLYVLKLYD-KIDPEKLSVNSHFMKDLGLDSLDQVEIIMAMEDEFGFEIP 68 Query: 62 EESANKILTVKDAVDFIRKAK 82 + A K++ ++ VD+I K Sbjct: 69 DIDAEKLMCPQEIVDYIADKK 89 >3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma} Length = 107 Score = 56.1 bits (135), Expect = 2e-09 Identities = 22/82 (26%), Positives = 38/82 (46%) Query: 2 PNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61 NA + + + L + V +E R E+ D LD VE V+ EE F + +P Sbjct: 17 INAVTNYIVGMCQKFLQKGEKVTPSSKLEELRTREDRLWDCLDTVEFVLDVEEIFDVTVP 76 Query: 62 EESANKILTVKDAVDFIRKAKQ 83 +E A+ T+++ DF+ + Sbjct: 77 DEVADNFQTLQEIADFVVSERA 98 >1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynthesis, lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 1l0h_A 2fhs_C 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A Length = 78 Score = 55.6 bits (134), Expect = 3e-09 Identities = 37/76 (48%), Positives = 54/76 (71%), Gaps = 1/76 (1%) Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66 + E VK++I QL VK++++ +A F+E+LGADSLD VELVM EE+F EIP+E A Sbjct: 3 TIEERVKKIIGEQL-GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAE 61 Query: 67 KILTVKDAVDFIRKAK 82 K+ TV+ A+D+I + Sbjct: 62 KMTTVQAAIDYINGHQ 77 >2kw2_A Specialized acyl carrier protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Rhodopseudomonas palustris} PDB: 3lmo_A Length = 101 Score = 54.5 bits (131), Expect = 6e-09 Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66 F+ V I+++ + + I + I++LG DSLD +++ ++ F +++P E Sbjct: 3 STFDRVAT-IIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWT 61 Query: 67 KILTVKDAVDFIRKAKQ 83 + + A + Sbjct: 62 QEVNDGKATTEQYFVLK 78 >3lmo_A Specialized acyl carrier protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Rhodopseudomonas palustris} Length = 101 Score = 53.7 bits (129), Expect = 1e-08 Identities = 15/72 (20%), Positives = 34/72 (47%), Gaps = 1/72 (1%) Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66 F+ V I+++ + + I + I++LG DSLD +++ ++ F +++P E Sbjct: 3 STFDRVAT-IIAETCDIPRETITPESHAIDDLGIDSLDFLDIAFAIDKAFGIKLPLEKWT 61 Query: 67 KILTVKDAVDFI 78 + + A Sbjct: 62 QEVNDGKATTEQ 73 >3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A* Length = 97 Score = 52.4 bits (125), Expect = 2e-08 Identities = 38/77 (49%), Positives = 54/77 (70%), Gaps = 1/77 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 + E VK++I QL VK++++ +A F+E+LGADSLD VELVM EE+F EIP+E A Sbjct: 21 STIEERVKKIIGEQL-GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEA 79 Query: 66 NKILTVKDAVDFIRKAK 82 KI TV+ A+D+I + Sbjct: 80 EKITTVQAAIDYINGHQ 96 >2amw_A Hypothetical protein NE2163; all helical protein, structural genomics, PSI, protein structure initiative; NMR {Nitrosomonas europaea} Length = 83 Score = 51.6 bits (124), Expect = 4e-08 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%) Query: 7 DVFEAVKEVILSQL-TSVKEDQIV-ESARFIEELGADSLDVVELVMIFEEKFSLEIPEE- 63 EAV+ ++ L ++ + S DS+ VV ++ EE F + ++ Sbjct: 2 QHLEAVRNILGDVLNLGERKHTLTASSVLLGNIPELDSMAVVNVITALEEYFDFSVDDDE 61 Query: 64 -SANKILTVKDAVDFIRK 80 SA T+ F+ Sbjct: 62 ISAQTFETLGSLALFVEH 79 >1nq4_A Oxytetracycline polyketide synthase acyl carrier protein; solution structure, dynamics, ACP, biosynthetic protein; NMR {Streptomyces rimosus} SCOP: a.28.1.1 Length = 95 Score = 48.7 bits (116), Expect = 3e-07 Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 2/76 (2%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 D+ ++E + S+ VE F + LG DSL ++ V E + +++ +++ Sbjct: 7 SDLLTLLRE-CAGEEESIDLGGDVEDVAF-DALGYDSLALLNTVGRIERDYGVQLGDDAV 64 Query: 66 NKILTVKDAVDFIRKA 81 K T + ++ + Sbjct: 65 EKATTPRALIEMTNAS 80 >2ava_A ACP I, acyl carrier protein I, chloroplast; four-helix-bundle, biosynthetic protein; NMR {Spinacia oleracea} PDB: 2fva_A* 2fve_A 2fvf_A* Length = 82 Score = 48.4 bits (115), Expect = 4e-07 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE 63 A + + V +++ +L ++ D +V + +LGADSLD VE+VM EE+F + + E+ Sbjct: 1 AKKETIDKVSDIVKEKL-ALGADVVVTADSEFSKLGADSLDTVEIVMNLEEEFGINVDED 59 Query: 64 SANKILTVKDAVDFIRKAKQ 83 A I T++ A D I + Sbjct: 60 KAQDISTIQQAADVIEGLLE 79 >2kci_A Putative acyl carrier protein; alpha, ACP, PCP, structural genomics, unknown function, PSI- 2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 2kjs_A* Length = 87 Score = 46.8 bits (111), Expect = 1e-06 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 1/73 (1%) Query: 8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANK 67 +A+ I Q+ + + DSL + L++ E + ++ K Sbjct: 3 TLDALTP-IFRQVFDDDSIVLTRETSANDIDAWDSLSHMNLIVSLEVHYKIKFALGELQK 61 Query: 68 ILTVKDAVDFIRK 80 + V D D + K Sbjct: 62 LKNVGDLADLVDK 74 >3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, lipid synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} PDB: 3gzl_A* 2fq0_A* 2fq2_A* Length = 81 Score = 46.9 bits (111), Expect = 1e-06 Identities = 37/78 (47%), Positives = 57/78 (73%), Gaps = 1/78 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 F+ +K++I QL SV+ED+I ++ F ++LGADSLD+VEL+M EEKF++ I ++ A Sbjct: 4 KSTFDDIKKIISKQL-SVEEDKIQMNSNFTKDLGADSLDLVELIMALEEKFNVTISDQDA 62 Query: 66 NKILTVKDAVDFIRKAKQ 83 KI TV+DA+D+I K + Sbjct: 63 LKINTVQDAIDYIEKNNK 80 >2ehs_A ACP, acyl carrier protein; lipid transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.30A {Aquifex aeolicus VF5} PDB: 2eht_A Length = 77 Score = 46.1 bits (109), Expect = 2e-06 Identities = 38/73 (52%), Positives = 57/73 (78%), Gaps = 1/73 (1%) Query: 8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANK 67 + E VKE+I QL V++++I A+F+E+LGADSLDVVEL+M FEE+F +EIP+E A K Sbjct: 2 LEERVKEIIAEQL-GVEKEKITPEAKFVEDLGADSLDVVELIMAFEEEFGIEIPDEDAEK 60 Query: 68 ILTVKDAVDFIRK 80 I TV D ++++++ Sbjct: 61 IQTVGDVINYLKE 73 >1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A Length = 80 Score = 46.1 bits (109), Expect = 2e-06 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 3/81 (3%) Query: 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP-- 61 A++ + V + IL+ LT + + E DS+ V+L++ + +F ++ P Sbjct: 1 ADEAIKNGVLD-ILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVS 59 Query: 62 EESANKILTVKDAVDFIRKAK 82 E + T + + +A+ Sbjct: 60 EFDRKEWDTPNKIIAKVEQAQ 80 >2cnr_A FAS, ACP, acyl carrier protein; polykdetide, phosphopantetheine, lipid transport; NMR {Streptomyces coelicolor} Length = 82 Score = 45.2 bits (106), Expect = 3e-06 Identities = 21/82 (25%), Positives = 43/82 (52%), Gaps = 1/82 (1%) Query: 1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60 M +++ + E++ ED ++ + ++L DSL +VE+V+ EE+F ++I Sbjct: 1 MAATQEEIVAGLAEIVNEIAGIPVEDVKLDKSFT-DDLDVDSLSMVEVVVAAEERFDVKI 59 Query: 61 PEESANKILTVKDAVDFIRKAK 82 P++ + TV DA +I + Sbjct: 60 PDDDVKNLKTVGDATKYILDHQ 81 >2qnw_A Acyl carrier protein; malaria, SGC, structural genomics consortium, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.90A {Toxoplasma gondii RH} Length = 82 Score = 45.1 bits (106), Expect = 4e-06 Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 1/78 (1%) Query: 5 NDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEES 64 + + E VK+V+ QL + + FI++L ADSLD VELVM FEEKF + IP+E Sbjct: 5 DRPLLERVKDVVADQLGVDRARI-NPESNFIKDLDADSLDSVELVMAFEEKFGVSIPDEE 63 Query: 65 ANKILTVKDAVDFIRKAK 82 A+KI TV+DA+ +I KAK Sbjct: 64 ASKIATVQDALSYIEKAK 81 >1or5_A Acyl carrier protein; ACP, biosynthesis, frenolicin, holo, polyketide synthase, PKS, biosynthetic protein; NMR {Streptomyces roseofulvus} SCOP: a.28.1.1 Length = 83 Score = 44.8 bits (106), Expect = 4e-06 Identities = 12/75 (16%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 8 VFEAVKEVILSQL-TSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66 + +K+++ D E +LG DSL ++E + ++++ + + +E+ Sbjct: 5 TVDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVG 64 Query: 67 KILTVKDAVDFIRKA 81 ++ T ++ +D + Sbjct: 65 RLGTPRELLDEVNTT 79 >1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.50A {Thermus thermophilus HB8} Length = 80 Score = 44.7 bits (105), Expect = 4e-06 Identities = 40/75 (53%), Positives = 55/75 (73%), Gaps = 1/75 (1%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 ++FE VK VI +L V+ +++ ARFIE+LGADSLD VEL+M E++F LEI +E A Sbjct: 4 QEIFEKVKAVIADKL-QVEPEKVTLEARFIEDLGADSLDTVELIMGLEDEFGLEISDEEA 62 Query: 66 NKILTVKDAVDFIRK 80 KI TVKDAV++I+ Sbjct: 63 EKIRTVKDAVEYIKA 77 >2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopantetheine; 1.83A {Mycobacterium tuberculosis} Length = 113 Score = 44.4 bits (104), Expect = 7e-06 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 2/70 (2%) Query: 11 AVKEVILSQLTSVKEDQ--IVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKI 68 A++E I + + + I + +++LG DSL + +L+ E++F + I A I Sbjct: 26 AMEEAINATIQRILRTDRGITANQVLVDDLGFDSLKLFQLITELEDEFDIAISFRDAQNI 85 Query: 69 LTVKDAVDFI 78 TV D + Sbjct: 86 KTVGDVYTSV 95 >2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, structural genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1 Length = 105 Score = 43.8 bits (103), Expect = 9e-06 Identities = 16/83 (19%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 + ++E++ + + G S V+L++ EE F +E P+ Sbjct: 21 GHMNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLL 80 Query: 66 NK-----ILTVKDAVDFIRKAKQ 83 N+ I ++D V I K+ Sbjct: 81 NRKSFASIKAIEDTVKLILDGKE 103 >1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1 Length = 92 Score = 42.5 bits (100), Expect = 3e-05 Identities = 14/80 (17%), Positives = 35/80 (43%), Gaps = 4/80 (5%) Query: 6 DDVFEAVKEV---ILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPE 62 ++ A+ ++ + TSV +I LG DSL + +++ E+ + ++I Sbjct: 7 LEIISAINKLVKAENGERTSVALGEITTDTEL-TSLGIDSLGLADVLWDLEQLYGIKIEM 65 Query: 63 ESANKILTVKDAVDFIRKAK 82 +A+ + + D + + Sbjct: 66 NTADAWSNLNNIGDVVEAVR 85 >1af8_A Actinorhodin polyketide synthase acyl carrier protein; solution structure, structure, antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A* Length = 86 Score = 41.1 bits (96), Expect = 6e-05 Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 DD+ A+ E + RF E++G DSL ++E E ++ + IP++ A Sbjct: 8 DDLRRALVEC-AGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYGVSIPDDVA 65 Query: 66 NKILTVKDAVDFIRKA 81 ++ T ++ +D I A Sbjct: 66 GRVDTPRELLDLINGA 81 >2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus} Length = 89 Score = 40.4 bits (95), Expect = 9e-05 Identities = 16/77 (20%), Positives = 39/77 (50%), Gaps = 4/77 (5%) Query: 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE 63 +++ +AV ++S+ + + +++ + + F ++G DSL + + F E L++ E Sbjct: 8 VSNEKLDAVMR-VVSEESGIALEELTDDSNF-ADMGIDSLSSMVIGSRFREDLGLDLGPE 65 Query: 64 SAN--KILTVKDAVDFI 78 + TV+ DF+ Sbjct: 66 FSLFIDCTTVRALKDFM 82 >1vku_A Acyl carrier protein; TM0175, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.00A {Thermotoga maritima MSB8} SCOP: a.28.1.1 Length = 100 Score = 35.4 bits (81), Expect = 0.003 Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%) Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65 + E I S+ + + E F +ELG DS+DV++LVM FE++F+L I +E Sbjct: 16 KKLIAKFVE-IASEKMGKDLETVDEENTF-KELGFDSIDVIDLVMFFEDEFALRIEDEEI 73 Query: 66 NKILTVKDAVDFIRK 80 +KI VKD +D + K Sbjct: 74 SKIRKVKDLIDIVIK 88 >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* Length = 2512 Score = 33.6 bits (76), Expect = 0.011 Identities = 10/45 (22%), Positives = 22/45 (48%) Query: 17 LSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61 ++ + +++ + + +LG DSL VE+ I E + L + Sbjct: 2132 VAHILGIRDVASINPDSTLVDLGLDSLMGVEVRQILEREHDLVLS 2176 >2roq_A Enterobactin synthetase component F; T-TE, PCP, thioesterase, peptidyl carrier protein, thiolation domain, non-ribosomal peptide synthetase; NMR {Escherichia coli} Length = 343 Score = 28.4 bits (62), Expect = 0.37 Identities = 4/25 (16%), Positives = 11/25 (44%) Query: 37 ELGADSLDVVELVMIFEEKFSLEIP 61 LG +L ++L + + ++ Sbjct: 43 ALGGHALLAMKLAAQLSRQVARQVT 67 >3dtb_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP]; gluconeogenesis, lyase, cytoplasm, decarboxylase, GTP-binding, nucleotide-binding; HET: GDP 1PE EPE; 1.30A {Rattus norvegicus} PDB: 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* 1nhx_A* 2gmv_A* Length = 624 Score = 28.3 bits (63), Expect = 0.44 Identities = 7/63 (11%), Positives = 25/63 (39%), Gaps = 13/63 (20%) Query: 1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60 +P + + + +V + +L + ++ + I++ E++ + ++ Sbjct: 560 VPKEDALNLKGLGDVNVEELFGISKEFWEKEVEEIDKY-------------LEDQVNADL 606 Query: 61 PEE 63 P E Sbjct: 607 PYE 609 >2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, termination module, phosphopantetheine; 2.6A {Bacillus subtilis} Length = 1304 Score = 27.4 bits (60), Expect = 0.78 Identities = 5/45 (11%), Positives = 19/45 (42%) Query: 37 ELGADSLDVVELVMIFEEKFSLEIPEESANKILTVKDAVDFIRKA 81 LG +L + +++ +++P + + T+ +++ Sbjct: 998 ALGGHALKAMTAASRIKKELGIDLPVKLLFEAPTIAGISAYLKNG 1042 >2cg5_B Fatty acid synthase; transferase/hydrolase, transferase/hydrolase (complex), fatty acid biosynthesis, phosphopantetheine transferase, FAsn, ACP; HET: COA; 2.7A {Homo sapiens} PDB: 2png_A Length = 91 Score = 27.2 bits (60), Expect = 0.88 Identities = 11/55 (20%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61 D + E + L + + + LG D+L VE+ E + +L + Sbjct: 6 DSQRDLVEAVAHILGIRDLAAVNLDSSLAD-LGLDALMSVEVRQTLERELNLVLS 59 >2i7g_A Monooxygenase, AGR_C_4197P; alpha-beta, TIM barrel, helix-bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.73A {Agrobacterium tumefaciens str} Length = 376 Score = 27.3 bits (59), Expect = 0.92 Identities = 4/22 (18%), Positives = 11/22 (50%) Query: 26 DQIVESARFIEELGADSLDVVE 47 +++E +++G D + E Sbjct: 49 RELLEEIELADQVGLDVFGLGE 70 >1z69_A COG2141, coenzyme F420-dependent N(5),N(10)- methylenetetrahydromethanopterin reductase; (alpha, beta)8 barrel, oxidoreductase; HET: F42 1PG; 2.61A {Methanosarcina barkeri} Length = 327 Score = 26.7 bits (57), Expect = 1.4 Identities = 5/22 (22%), Positives = 11/22 (50%) Query: 26 DQIVESARFIEELGADSLDVVE 47 +I A+ E+ G D + + + Sbjct: 14 LKIAYYAKLSEQQGFDHVWITD 35 >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 1688 Score = 26.7 bits (58), Expect = 1.4 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 15/78 (19%) Query: 5 NDDVFEAVKEVILSQ-LTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE 63 N + E ++EVI+ + L + + E+A + D +D+ EIPE Sbjct: 916 NPEKKEMIQEVIVEEDLEPFEASK--ETAEQFKHQHGDKVDI------------FEIPET 961 Query: 64 SANKILTVKDAVDFIRKA 81 + +K A +I KA Sbjct: 962 GEYSVKLLKGATLYIPKA 979 >3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP- binding, cell division, disease mutation, kinase, nucleotide-binding; 3.00A {Homo sapiens} Length = 308 Score = 26.7 bits (58), Expect = 1.5 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 10 EAVKEV-ILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANKI 68 V+EV +L +L + + +V D V LV ++ +++ Sbjct: 57 STVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQDLRTYLDKAPPPG 116 Query: 69 LTVKDAVDFIR 79 L + D +R Sbjct: 117 LPAETIKDLMR 127 >3c8n_A Probable F420-dependent glucose-6-phosphate dehydrogenase FGD1; TIM barrel, non-prolyl CIS-peptide, oxidoreductase; 1.90A {Mycobacterium tuberculosis H37RV} PDB: 3b4y_A Length = 356 Score = 25.8 bits (55), Expect = 2.4 Identities = 8/22 (36%), Positives = 11/22 (50%) Query: 26 DQIVESARFIEELGADSLDVVE 47 ++VE A E G DS V + Sbjct: 38 RELVELAVAAEAHGMDSATVSD 59 >2jgp_A Tyrocidine synthetase 3; multifunctional enzyme, antibiotic biosynthesis, condensation domain, peptide bond formation, ligase, antibiotics; 1.85A {Brevibacillus brevis} Length = 520 Score = 25.8 bits (55), Expect = 2.7 Identities = 6/25 (24%), Positives = 13/25 (52%) Query: 37 ELGADSLDVVELVMIFEEKFSLEIP 61 LG SL + ++ ++ ++IP Sbjct: 36 ALGGHSLRAMRVLSSMHNEYQVDIP 60 >1luc_B Bacterial luciferase; monooxygenase, flavoprotein; 1.50A {Vibrio harveyi} SCOP: c.1.16.1 PDB: 1brl_B 1bsl_A 1xkj_A 3fgc_B* Length = 324 Score = 25.2 bits (54), Expect = 3.9 Identities = 6/22 (27%), Positives = 17/22 (77%) Query: 26 DQIVESARFIEELGADSLDVVE 47 ++++++A ++++L D+L V E Sbjct: 22 EEMLDTAHYVDQLKFDTLAVYE 43 >2wgk_A 3,6-diketocamphane 1,6 monooxygenase; camphor pathway, oxidoreductase; 2.00A {Pseudomonas putida} Length = 378 Score = 24.8 bits (53), Expect = 5.2 Identities = 6/18 (33%), Positives = 11/18 (61%) Query: 26 DQIVESARFIEELGADSL 43 D ++SA + +G DS+ Sbjct: 24 DWGIKSAVQADSVGIDSM 41 >2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A* Length = 608 Score = 24.0 bits (52), Expect = 8.3 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 13/63 (20%) Query: 1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60 +P D + V SQL +++ E R + E + E F ++ Sbjct: 544 VPKEGDLDLGGLPGVDYSQLFPMEKGFWEEECRQLREY-------------YGENFGADL 590 Query: 61 PEE 63 P + Sbjct: 591 PRD 593 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.313 0.131 0.330 Gapped Lambda K H 0.267 0.0492 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 656,179 Number of extensions: 25934 Number of successful extensions: 153 Number of sequences better than 10.0: 1 Number of HSP's gapped: 147 Number of HSP's successfully gapped: 57 Length of query: 85 Length of database: 5,693,230 Length adjustment: 53 Effective length of query: 32 Effective length of database: 4,408,298 Effective search space: 141065536 Effective search space used: 141065536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 50 (23.6 bits)