RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780534|ref|YP_003064947.1| acyl carrier protein
[Candidatus Liberibacter asiaticus str. psy62]
(85 letters)
>d1f80d_ a.28.1.1 (D:) Acyl carrier protein {Bacillus subtilis
[TaxId: 1423]}
Length = 74
Score = 58.6 bits (142), Expect = 1e-10
Identities = 36/73 (49%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
D E V ++I+ +L V E + A F E+LGAD LDVVELVM E++F +EI +E A
Sbjct: 3 DTLERVTKIIVDRL-GVDEADVKLEASFKEDLGADXLDVVELVMELEDEFDMEISDEDAE 61
Query: 67 KILTVKDAVDFIR 79
KI TV DAV++I+
Sbjct: 62 KIATVGDAVNYIQ 74
>d1t8ka_ a.28.1.1 (A:) Acyl carrier protein {Escherichia coli
[TaxId: 562]}
Length = 77
Score = 55.6 bits (134), Expect = 1e-09
Identities = 38/76 (50%), Positives = 54/76 (71%), Gaps = 1/76 (1%)
Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESAN 66
+ E VK++I QL VK++++ +A F+E+LGADSLD VELVM EE+F EIP+E A
Sbjct: 2 TIEERVKKIIGEQL-GVKQEEVTNNASFVEDLGADSLDTVELVMALEEEFDTEIPDEEAE 60
Query: 67 KILTVKDAVDFIRKAK 82
KI TV+ A+D+I +
Sbjct: 61 KITTVQAAIDYINGHQ 76
>d1klpa_ a.28.1.1 (A:) Acyl carrier protein {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 115
Score = 49.8 bits (118), Expect = 6e-08
Identities = 25/85 (29%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Query: 1 MPNANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEI 60
MP +++ + E I+ ++T ++ +I F+++L DSL +VE+ + E+K+ ++I
Sbjct: 1 MPVTQEEIIAGIAE-IIEEVTGIEPSEITPEKSFVDDLDIDSLSMVEIAVQTEDKYGVKI 59
Query: 61 PEESANKILTVKDAVDFIRKAKQTN 85
P+E + TV D V +I+K ++ N
Sbjct: 60 PDEDLAGLRTVGDVVAYIQKLEEEN 84
>d1dv5a_ a.28.1.3 (A:) apo-D-alanyl carrier protein {Lactobacillus
casei [TaxId: 1582]}
Length = 80
Score = 47.2 bits (112), Expect = 4e-07
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 4 ANDDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP-- 61
A++ + V + IL+ LT + + E DS+ V+L++ + +F ++ P
Sbjct: 1 ADEAIKNGVLD-ILADLTGSDDVKKNLDLNLFETGLLDSMGTVQLLLELQSQFGVDAPVS 59
Query: 62 EESANKILTVKDAVDFIRKAK 82
E + T + + +A+
Sbjct: 60 EFDRKEWDTPNKIIAKVEQAQ 80
>d1nq4a_ a.28.1.1 (A:) Oxytetracycline polyketide synthase acyl
carrier {Streptomyces rimosus [TaxId: 1927]}
Length = 95
Score = 44.6 bits (105), Expect = 2e-06
Identities = 15/76 (19%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
D+ ++E + S+ VE F + LG DSL ++ V E + +++ +++
Sbjct: 7 SDLLTLLRE-CAGEEESIDLGGDVEDVAF-DALGYDSLALLNTVGRIERDYGVQLGDDAV 64
Query: 66 NKILTVKDAVDFIRKA 81
K T + ++ +
Sbjct: 65 EKATTPRALIEMTNAS 80
>d1or5a_ a.28.1.1 (A:) Frenolicin polyketide synthase acyl carrier
protein, Fren ACP {Streptomyces roseofulvus [TaxId:
33902]}
Length = 82
Score = 43.0 bits (101), Expect = 7e-06
Identities = 12/74 (16%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 9 FEAVKEVILSQL-TSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESANK 67
+ +K+++ D E +LG DSL ++E + ++++ + + +E+ +
Sbjct: 5 VDDLKKLLAETAGEDDSVDLAGELDTPFVDLGYDSLALLETAAVLQQRYGIALTDETVGR 64
Query: 68 ILTVKDAVDFIRKA 81
+ T ++ +D +
Sbjct: 65 LGTPRELLDEVNTT 78
>d2af8a_ a.28.1.1 (A:) Actinorhodin polyketide synthase acyl
carrier protein, ACT ACP {Streptomyces coelicolor,
A3(2) [TaxId: 1902]}
Length = 86
Score = 40.4 bits (94), Expect = 4e-05
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
DD+ A+ E + RF E++G DSL ++E E ++ + IP++ A
Sbjct: 8 DDLRRALVEC-AGETDGTDLSGDFLDLRF-EDIGYDSLALMETAARLESRYGVSIPDDVA 65
Query: 66 NKILTVKDAVDFIRKA 81
++ T ++ +D I A
Sbjct: 66 GRVDTPRELLDLINGA 81
>d1vkua_ a.28.1.1 (A:) Acyl carrier protein {Thermotoga maritima
[TaxId: 2336]}
Length = 85
Score = 37.7 bits (87), Expect = 3e-04
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 6 DDVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEESA 65
+ E+ ++ + + E F +ELG DS+DV++LVM FE++F+L I +E
Sbjct: 7 KKLIAKFVEIASEKMG-KDLETVDEENTF-KELGFDSIDVIDLVMFFEDEFALRIEDEEI 64
Query: 66 NKILTVKDAVDFIRK 80
+KI VKD +D + K
Sbjct: 65 SKIRKVKDLIDIVIK 79
>d2jq4a1 a.28.1.1 (A:1-83) Hypothetical protein Atu2571
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 83
Score = 32.6 bits (74), Expect = 0.009
Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 8 VFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP-----E 62
+ ++E++ + + G S V+L++ EE F +E P
Sbjct: 1 MNATIREILAKFGQLPTPVDTIADEADLYAAGLSSFASVQLMLGIEEAFDIEFPDNLLNR 60
Query: 63 ESANKILTVKDAVDFIRKAKQ 83
+S I ++D V I K+
Sbjct: 61 KSFASIKAIEDTVKLILDGKE 81
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II
(gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Length = 183
Score = 27.0 bits (59), Expect = 0.43
Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 8/83 (9%)
Query: 7 DVFEAVKEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIPEE--- 63
D FE IL QL SV + +AR + G D E + + +
Sbjct: 13 DAFEQGVRAILGQLVSVAMAAKL-TARVAQLYGERLDDFPEYICFPTPQRLAAADPQALK 71
Query: 64 ----SANKILTVKDAVDFIRKAK 82
+ + + +
Sbjct: 72 ALGMPLKRAEALIHLANAALEGT 94
>d1f07a_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 321
Score = 26.6 bits (57), Expect = 0.61
Identities = 4/22 (18%), Positives = 13/22 (59%)
Query: 26 DQIVESARFIEELGADSLDVVE 47
++IV+ + E++G + + +
Sbjct: 14 EKIVKLVKLAEDVGFEYAWITD 35
>d2pnga1 a.28.1.1 (A:1-76) Type I fatty acid synthase ACP domain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 76
Score = 26.0 bits (57), Expect = 0.92
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 16 ILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSLEIP 61
++ + +++ + + +LG DSL VE+ I E + L +P
Sbjct: 12 AVAHILGIRDLAGINLDSSLADLGLDSLMGVEVRQILEREHDLVLP 57
>d1rhca_ c.1.16.3 (A:) Coenzyme F420 dependent secondary alcohol
dehydrogenase {Archaeon Methanoculleus thermophilicus
[TaxId: 2200]}
Length = 330
Score = 25.1 bits (53), Expect = 1.6
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 26 DQIVESARFIEELGADSLDVVE 47
+E A E++G DS+ V +
Sbjct: 17 MDALEQAIRAEKVGFDSVWVDD 38
>d1ezwa_ c.1.16.3 (A:) Coenzyme F420 dependent
tetrahydromethanopterin reductase {Archaeon
Methanopyrus kandleri [TaxId: 2320]}
Length = 347
Score = 24.7 bits (52), Expect = 2.1
Identities = 3/22 (13%), Positives = 9/22 (40%)
Query: 26 DQIVESARFIEELGADSLDVVE 47
+I + E+ G + + +
Sbjct: 16 TKIAHLIKVAEDNGFEYAWICD 37
>d1l5ia_ d.89.1.4 (A:) DNA-binding domain of REP protein
{Geminivirus (Tomato yellow leaf curl virus - sardinia)
[TaxId: 123735]}
Length = 118
Score = 24.0 bits (52), Expect = 3.3
Identities = 11/46 (23%), Positives = 23/46 (50%)
Query: 13 KEVILSQLTSVKEDQIVESARFIEELGADSLDVVELVMIFEEKFSL 58
KE LSQ+T+++ + EL + + +++ FE K++
Sbjct: 22 KENALSQITNLQTPTNKLFIKICRELHENGEPHLHILIQFEGKYNC 67
>d1w1ha_ b.55.1.1 (A:) 3-phosphoinositide dependent protein
kinase-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 147
Score = 23.1 bits (49), Expect = 6.6
Identities = 6/32 (18%), Positives = 15/32 (46%)
Query: 33 RFIEELGADSLDVVELVMIFEEKFSLEIPEES 64
++I +L ++S ++ E++ LE
Sbjct: 5 QYIHDLDSNSFELDLQFSEDEKRLLLEKQAGG 36
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 22.6 bits (47), Expect = 8.8
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 6 DDVFEAVKEVILSQ 19
VF+AV +VI+
Sbjct: 181 QFVFDAVTDVIIKN 194
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.131 0.330
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 285,540
Number of extensions: 11438
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 29
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)