HHsearch alignment for GI: 254780535 and conserved domain: COG1088

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].
Probab=99.33  E-value=4.1e-10  Score=85.20  Aligned_cols=219  Identities=18%  Similarity=0.183  Sum_probs=150.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCE--EEEEEC-C-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             78999389985789999999988997--999978-9-8999999997213894899988899999999999999999769
Q gi|254780535|r    7 KKALVTGASGSIGLAIAKILYKQGAS--VGLHGT-S-QEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEMGG   82 (247)
Q Consensus         7 K~~lITG~~~GIG~~ia~~la~~Ga~--V~i~~r-~-~~~l~~~~~~~~~~g~~~~~~~Dv~~~~~~~~~~~~~~~~~g~   82 (247)
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l-~~~~~~~~~~fv~~DI~D~~~v~~~~~~~-----~   74 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENL-ADVEDSPRYRFVQGDICDRELVDRLFKEY-----Q   74 (340)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-HHHHCCCCCEEEECCCCCHHHHHHHHHHC-----C
T ss_conf             93799657515778999999960997528997523315778788-86406997158854554799999999744-----8


Q ss_pred             CCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH-------------CCCCC
Q ss_conf             98999678989988754439999999999988999999999999998629984999476233-------------88999
Q gi|254780535|r   83 VDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVG-------------FTGNA  149 (247)
Q Consensus        83 iDilVnnAg~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~~~-------------~~~~~  149 (247)
T Consensus        75 ~D~VvhfAAESHV----DRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~---frf~HISTDEVYG~l~~~~~~FtE~tp~~  147 (340)
T COG1088          75 PDAVVHFAAESHV----DRSIDGPAPFIQTNVVGTYTLLEAARKYWGK---FRFHHISTDEVYGDLGLDDDAFTETTPYN  147 (340)
T ss_pred             CCEEEEECHHCCC----CCCCCCHHHHHHCCHHHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             8759981100133----2233570553400028799999999984666---20799415210256667888754479999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHH--HHCCCHHHHHHHHHCCCCC---------CCCCHHHH
Q ss_conf             857789889999999999999963228599634338817934--4228989999998539798---------88579999
Q gi|254780535|r  150 GQVNYCAAKSGLTGFTKALAQETGRRNVTVNCVAPGFIGSDM--TVNLTEDQKGKIISSIPMK---------RMGAVDDI  218 (247)
Q Consensus       150 ~~~~Y~~sK~ai~~ltk~lA~e~~~~gIrvN~IaPG~i~T~~--~~~~~~~~~~~~~~~~pl~---------R~~~pedi  218 (247)
T Consensus       148 PsSPYSASKAasD~lVray~~TYg---lp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh  224 (340)
T COG1088         148 PSSPYSASKAASDLLVRAYVRTYG---LPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDH  224 (340)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHCC---CCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCEEEEEEEHHH
T ss_conf             999740445567899999998719---96698447777688767155667999999739998543698540205871757


Q ss_pred             HHHHHHHHCHHHCCCCCCEEEECCCE
Q ss_conf             99999973888787788689968950
Q gi|254780535|r  219 AAAVLYLSSLEASYVTGQTIHVNGGM  244 (247)
Q Consensus       219 a~~v~fL~S~~~~~itG~~i~vDGG~  244 (247)
T Consensus       225 ~~ai~~Vl~-k-g~~-GE~YNIgg~~  247 (340)
T COG1088         225 CRAIDLVLT-K-GKI-GETYNIGGGN  247 (340)
T ss_pred             HHHHHHHHH-C-CCC-CCEEEECCCC
T ss_conf             889999995-6-867-7668717875