HHsearch alignment for GI: 254780535 and conserved domain: COG1088
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].
Probab=99.33 E-value=4.1e-10 Score=85.20 Aligned_cols=219 Identities=18% Similarity=0.183 Sum_probs=150.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCCCE--EEEEEC-C-HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 78999389985789999999988997--999978-9-8999999997213894899988899999999999999999769
Q gi|254780535|r 7 KKALVTGASGSIGLAIAKILYKQGAS--VGLHGT-S-QEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEMGG 82 (247)
Q Consensus 7 K~~lITG~~~GIG~~ia~~la~~Ga~--V~i~~r-~-~~~l~~~~~~~~~~g~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 82 (247)
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l-~~~~~~~~~~fv~~DI~D~~~v~~~~~~~-----~ 74 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENL-ADVEDSPRYRFVQGDICDRELVDRLFKEY-----Q 74 (340)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHH-HHHHCCCCCEEEECCCCCHHHHHHHHHHC-----C
T ss_conf 93799657515778999999960997528997523315778788-86406997158854554799999999744-----8
Q ss_pred CCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHH-------------CCCCC
Q ss_conf 98999678989988754439999999999988999999999999998629984999476233-------------88999
Q gi|254780535|r 83 VDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVG-------------FTGNA 149 (247)
Q Consensus 83 iDilVnnAg~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~~~-------------~~~~~ 149 (247)
T Consensus 75 ~D~VvhfAAESHV----DRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~---frf~HISTDEVYG~l~~~~~~FtE~tp~~ 147 (340)
T COG1088 75 PDAVVHFAAESHV----DRSIDGPAPFIQTNVVGTYTLLEAARKYWGK---FRFHHISTDEVYGDLGLDDDAFTETTPYN 147 (340)
T ss_pred CCEEEEECHHCCC----CCCCCCHHHHHHCCHHHHHHHHHHHHHHCCC---CEEEEECCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 8759981100133----2233570553400028799999999984666---20799415210256667888754479999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHH--HHCCCHHHHHHHHHCCCCC---------CCCCHHHH
Q ss_conf 857789889999999999999963228599634338817934--4228989999998539798---------88579999
Q gi|254780535|r 150 GQVNYCAAKSGLTGFTKALAQETGRRNVTVNCVAPGFIGSDM--TVNLTEDQKGKIISSIPMK---------RMGAVDDI 218 (247)
Q Consensus 150 ~~~~Y~~sK~ai~~ltk~lA~e~~~~gIrvN~IaPG~i~T~~--~~~~~~~~~~~~~~~~pl~---------R~~~pedi 218 (247)
T Consensus 148 PsSPYSASKAasD~lVray~~TYg---lp~~ItrcSNNYGPyqfpEKlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh 224 (340)
T COG1088 148 PSSPYSASKAASDLLVRAYVRTYG---LPATITRCSNNYGPYQFPEKLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDH 224 (340)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCC---CCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEECCCCCEEEEEEEHHH
T ss_conf 999740445567899999998719---96698447777688767155667999999739998543698540205871757
Q ss_pred HHHHHHHHCHHHCCCCCCEEEECCCE
Q ss_conf 99999973888787788689968950
Q gi|254780535|r 219 AAAVLYLSSLEASYVTGQTIHVNGGM 244 (247)
Q Consensus 219 a~~v~fL~S~~~~~itG~~i~vDGG~ 244 (247)
T Consensus 225 ~~ai~~Vl~-k-g~~-GE~YNIgg~~ 247 (340)
T COG1088 225 CRAIDLVLT-K-GKI-GETYNIGGGN 247 (340)
T ss_pred HHHHHHHHH-C-CCC-CCEEEECCCC
T ss_conf 889999995-6-867-7668717875