HHsearch alignment for GI: 254780535 and conserved domain: COG1089
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].
Probab=97.91 E-value=8.8e-05 Score=50.87 Aligned_cols=211 Identities=18% Similarity=0.160 Sum_probs=132.2
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH----HHHHH-HHCCCCEEEEECCCCCHHHHHHHHHHHHHH
Q ss_conf 8778999389985789999999988997999978989999----99997-213894899988899999999999999999
Q gi|254780535|r 5 TGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLE----KVAKN-FDDVDRFLLFPANFSDRVSVEYLSKRVNEE 79 (247)
Q Consensus 5 ~~K~~lITG~~~GIG~~ia~~la~~Ga~V~i~~r~~~~l~----~~~~~-~~~~g~~~~~~~Dv~~~~~~~~~~~~~~~~ 79 (247)
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~-- 78 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQ-- 78 (345)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCC--
T ss_conf 972699954458753899999985694898786033557765301111655578617999655435688999998609--
Q ss_pred HCCCCEEEECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCH--HH---------CCCC
Q ss_conf 769989996789899887544399999999999889999999999999986299849994762--33---------8899
Q gi|254780535|r 80 MGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSV--VG---------FTGN 148 (247)
Q Consensus 80 ~g~iDilVnnAg~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~--~~---------~~~~ 148 (247)
T Consensus 79 ---PdEIYNLaAQS~V~----vSFe~P~~T~~~~~iGtlrlLEa-iR~~~-~~~~rfYQAStSE~fG~v~~~pq~E~TPF 149 (345)
T COG1089 79 ---PDEIYNLAAQSHVG----VSFEQPEYTADVDAIGTLRLLEA-IRILG-EKKTRFYQASTSELYGLVQEIPQKETTPF 149 (345)
T ss_pred ---CHHHEECCCCCCCC----CCCCCCCEEEEECHHHHHHHHHH-HHHHC-CCCCEEEECCCHHHHCCCCCCCCCCCCCC
T ss_conf ---44533034323455----30358640253100678899999-99748-76607996561776067666754468999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH---HHCCEEEEECCCCCCCHHHHCCCHHHHH---H------HHHCCCCCCCCCHH
Q ss_conf 9857789889999999999999963---2285996343388179344228989999---9------98539798885799
Q gi|254780535|r 149 AGQVNYCAAKSGLTGFTKALAQETG---RRNVTVNCVAPGFIGSDMTVNLTEDQKG---K------IISSIPMKRMGAVD 216 (247)
Q Consensus 149 ~~~~~Y~~sK~ai~~ltk~lA~e~~---~~gIrvN~IaPG~i~T~~~~~~~~~~~~---~------~~~~~pl~R~~~pe 216 (247)
T Consensus 150 yPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FVTRKIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~ 229 (345)
T COG1089 150 YPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFVTRKITRAVARIKLGLQDKLYLGNLDAKRDWGHAK 229 (345)
T ss_pred CCCCHHHHHHHHHHHEEEEHHHHCCCEEECCEEECCCCCCCCCCEEHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCHH
T ss_conf 88977889998777603014763473343114433789877531033899999999870661268743633102343167
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999973
Q gi|254780535|r 217 DIAAAVLYLS 226 (247)
Q Consensus 217 dia~~v~fL~ 226 (247)
T Consensus 230 DYVe~mwlmL 239 (345)
T COG1089 230 DYVEAMWLML 239 (345)
T ss_pred HHHHHHHHHH
T ss_conf 8999999997