HHsearch alignment for GI: 254780535 and conserved domain: COG1091
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane].
Probab=98.99 E-value=7.4e-08 Score=70.64 Aligned_cols=180 Identities=20% Similarity=0.206 Sum_probs=128.8
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99938998578999999998899799997898999999997213894899988899999999999999999769989996
Q gi|254780535|r 9 ALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEMGGVDILVN 88 (247)
Q Consensus 9 ~lITG~~~GIG~~ia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~g~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDilVn 88 (247)
T Consensus 3 iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~--------------------~Ditd~~~v~~~i~~~-----~PDvVIn 56 (281)
T COG1091 3 ILITGANGQLGTELRRALP-GEFEVIATDRAE--------------------LDITDPDAVLEVIRET-----RPDVVIN 56 (281)
T ss_pred EEEECCCCHHHHHHHHHHC-CCCEEEECCCCC--------------------CCCCCHHHHHHHHHHH-----CCCEEEE
T ss_conf 8997698767999999717-784399515765--------------------5556858999999861-----9998998
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCC-----------CHHHHHH
Q ss_conf 78989988754439999999999988999999999999998629984999476233889998-----------5778988
Q gi|254780535|r 89 NAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNAG-----------QVNYCAA 157 (247)
Q Consensus 89 nAg~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~~~~~~~~~-----------~~~Y~~s 157 (247)
T Consensus 57 ~AAyt~vD~----aE~~~e~A~~vNa~~~~~lA~aa~~~-----ga~lVhiSTDyVFDG~~~~~Y~E~D~~~P~nvYG~s 127 (281)
T COG1091 57 AAAYTAVDK----AESEPELAFAVNATGAENLARAAAEV-----GARLVHISTDYVFDGEKGGPYKETDTPNPLNVYGRS 127 (281)
T ss_pred CCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHHH-----CCEEEEEECCEEECCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 732036541----33898997776779999999999971-----976999634457438989888778999970245477
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCHHHHHHHHHCCCCC-------CCCCHHHHHHHHHHHHCHHH
Q ss_conf 99999999999999632285996343388179344228989999998539798-------88579999999999738887
Q gi|254780535|r 158 KSGLTGFTKALAQETGRRNVTVNCVAPGFIGSDMTVNLTEDQKGKIISSIPMK-------RMGAVDDIAAAVLYLSSLEA 230 (247)
Q Consensus 158 K~ai~~ltk~lA~e~~~~gIrvN~IaPG~i~T~~~~~~~~~~~~~~~~~~pl~-------R~~~pedia~~v~fL~S~~~ 230 (247)
T Consensus 128 Kl~GE~~v~~~~----~~~---~I~Rtswv~g~~g~nFv~tml~la~~~~~l~vv~Dq~gsPt~~~dlA~~i~~ll~~~~ 200 (281)
T COG1091 128 KLAGEEAVRAAG----PRH---LILRTSWVYGEYGNNFVKTMLRLAKEGKELKVVDDQYGSPTYTEDLADAILELLEKEK 200 (281)
T ss_pred HHHHHHHHHHHC----CCE---EEEEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCEEECCCCHHHHHHHHHHHHHCCC
T ss_conf 897899999739----987---9998565545888778999999850599269979845387469999999999983455