HHsearch alignment for GI: 254780535 and conserved domain: PRK09009
>PRK09009 C factor cell-cell signaling protein; Provisional.
Probab=100.00 E-value=0 Score=357.50 Aligned_cols=221 Identities=21% Similarity=0.332 Sum_probs=191.7
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89993899857899999999889979999789899999999721389489998889999999999999999976998999
Q gi|254780535|r 8 KALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEMGGVDILV 87 (247)
Q Consensus 8 ~~lITG~~~GIG~~ia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~g~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDilV 87 (247)
T Consensus 2 nVLITGas~GIG~aia~~l~~~~~~~~v~~~~~~~~~----~~-~~~~v~~~~~Dvt~~~~i~~~----~~~~~~iD~li 72 (235)
T PRK09009 2 NILIVGGSGGIGKAMVKQLLETYPDATVHATYRHHKP----DF-RHDNVQWHALDVTDEAEIKQL----SEQFTQLDWLI 72 (235)
T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCEEEEEEECCCCC----CC-CCCCEEEEECCCCCHHHHHHH----HHHHCCCCEEE
T ss_conf 7999755639999999999856998099997377654----44-579838998747999999999----98708778999
Q ss_pred ECCCCCC------CCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCC---CCCCHHHHHHH
Q ss_conf 6789899------88754439999999999988999999999999998629984999476233889---99857789889
Q gi|254780535|r 88 NNAGIVR------DSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTG---NAGQVNYCAAK 158 (247)
Q Consensus 88 nnAg~~~------~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~~~~~~---~~~~~~Y~~sK 158 (247)
T Consensus 73 nnAGi~~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~l~~~~~~~iv~isS~~g~i~~~~~~g~~~Y~aSK 152 (235)
T PRK09009 73 NCVGMLHTQDKGPEKSLQSLDSDFFLQNITLNTLPSLLLAKHFTPLLKQSESARFAVISAKVGSISDNRLGGWYSYRASK 152 (235)
T ss_pred ECCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 76752446777764686778999999999886199999999999999860787640122234157788888623669999
Q ss_pred HHHHHHHHHHHHHHHHH--CCEEEEECCCCCCCHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCHHHCCCCCC
Q ss_conf 99999999999996322--8599634338817934422898999999853979888579999999999738887877886
Q gi|254780535|r 159 SGLTGFTKALAQETGRR--NVTVNCVAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAVDDIAAAVLYLSSLEASYVTGQ 236 (247)
Q Consensus 159 ~ai~~ltk~lA~e~~~~--gIrvN~IaPG~i~T~~~~~~~~~~~~~~~~~~pl~R~~~pedia~~v~fL~S~~~~~itG~ 236 (247)
T Consensus 153 aAl~~lt~~la~E~~~~~~~i~V~~i~PG~v~T~m~~~--------~~~~~p~~r~~~PeeiA~~i~~L~s~~s~~~tG~ 224 (235)
T PRK09009 153 AALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTPLSKP--------FQQNVPKGKLFTPEYVAQCLLGIIANATPAQSGS 224 (235)
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCH--------HHHCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 99999999999997642699689998148656712306--------7857998888299999999999971697236988
Q ss_pred EEEECCCEE
Q ss_conf 899689504
Q gi|254780535|r 237 TIHVNGGMA 245 (247)
Q Consensus 237 ~i~vDGG~~ 245 (247)
T Consensus 225 ~i~vdG~~~ 233 (235)
T PRK09009 225 FLAYDGEEL 233 (235)
T ss_pred EEEECCCCC
T ss_conf 897897787