HHsearch alignment for GI: 254780535 and conserved domain: TIGR01214
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process.
Probab=98.74 E-value=1e-07 Score=69.80 Aligned_cols=192 Identities=20% Similarity=0.201 Sum_probs=143.6
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89993899857899999999889979999789899999999721389489998889999999999999999976998999
Q gi|254780535|r 8 KALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEMGGVDILV 87 (247)
Q Consensus 8 ~~lITG~~~GIG~~ia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~g~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDilV 87 (247)
T Consensus 1 rilitGa~GQlG~~L~~~l~~~g~~~~~~~~~-~~~~~~---------~~~~~~Dl~dP~~l~~~~r~~-----~Pd~vv 65 (317)
T TIGR01214 1 RILITGANGQLGRELVQQLSKPGRVVVALTRS-TRLKLA---------ARWSQLDLTDPEALEELLRAI-----RPDAVV 65 (317)
T ss_pred CEEEECCCCHHHHHHHHHCCCCCCEEEEECCC-CCCCHH---------HHHHHHCCCCHHHHHHHHHHH-----CCCEEE
T ss_conf 97887387567999999707888278643687-776113---------365440622468899999852-----875376
Q ss_pred ECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCC----CCC-----------CH
Q ss_conf 678989988754439999999999988999999999999998629984999476233889----998-----------57
Q gi|254780535|r 88 NNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTG----NAG-----------QV 152 (247)
Q Consensus 88 nnAg~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~~~~~~----~~~-----------~~ 152 (247)
T Consensus 66 ntAAYT~V----D~AE~~~~~AyavNa~A~~~lA~~A~~~-----Ga~~vh~STDYVFDGdfGG~~~~PY~e~D~~nPln 136 (317)
T TIGR01214 66 NTAAYTDV----DGAESDPEKAYAVNALAPQNLARAAARV-----GARLVHISTDYVFDGDFGGEGKRPYREDDETNPLN 136 (317)
T ss_pred ECCHHCCC----CCCCCCHHHHHHHHHHHHHHHHHHHHHC-----CCEEEEEEECEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 23011010----0003777787657407899999999866-----91599986342344755788866887646879843
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHH---HCCCHHHHHHH-HHCCCCC----CCCCH---HHHHHH
Q ss_conf 7898899999999999999632285996343388179344---22898999999-8539798----88579---999999
Q gi|254780535|r 153 NYCAAKSGLTGFTKALAQETGRRNVTVNCVAPGFIGSDMT---VNLTEDQKGKI-ISSIPMK----RMGAV---DDIAAA 221 (247)
Q Consensus 153 ~Y~~sK~ai~~ltk~lA~e~~~~gIrvN~IaPG~i~T~~~---~~~~~~~~~~~-~~~~pl~----R~~~p---edia~~ 221 (247)
T Consensus 137 vYG~SK~~GE~a~~~~~~----~-e~~lIvRTsWlY~~~g~~g~NF~~tMlrLaG~~~~~l~vV~DQ~GsPTy~~dLA~~ 211 (317)
T TIGR01214 137 VYGQSKLAGEQAVRAAGP----D-ENALIVRTSWLYGAGGGSGRNFVKTMLRLAGKEREELRVVDDQIGSPTYAKDLARA 211 (317)
T ss_pred CCCHHHHHHHHHHHHHCC----C-CCEEEEEEEEEECCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHH
T ss_conf 121115689999998379----9-85788985213448998842179999985378998403785576873589999999
Q ss_pred HHHHHCH
Q ss_conf 9997388
Q gi|254780535|r 222 VLYLSSL 228 (247)
Q Consensus 222 v~fL~S~ 228 (247)
T Consensus 212 ~~~ll~~ 218 (317)
T TIGR01214 212 IAALLER 218 (317)
T ss_pred HHHHHHH
T ss_conf 9999976