HHsearch alignment for GI: 254780535 and conserved domain: TIGR02632
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454 Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=100.00 E-value=0 Score=383.18 Aligned_cols=243 Identities=31% Similarity=0.388 Sum_probs=224.8
Q ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHC---CCCEEE------------EECCCCCHH
Q ss_conf 78877899938998578999999998899799997898999999997213---894899------------988899999
Q gi|254780535|r 3 DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDD---VDRFLL------------FPANFSDRV 67 (247)
Q Consensus 3 ~l~~K~~lITG~~~GIG~~ia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~---~g~~~~------------~~~Dv~~~~ 67 (247)
T Consensus 421 ~LA~~Va~VtGGasGIG~~~A~rL~~eGAhvV~aD~d~~~a~~va~~~~~~fG~d~a~AGsdisaCGPaiGl~~DvT~e~ 500 (709)
T TIGR02632 421 ELARRVAFVTGGASGIGRETARRLVDEGAHVVLADLDAEAAEAVAAEIVDKFGADKAVAGSDISACGPAIGLKLDVTDEE 500 (709)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEECCCCHHCCCCCEEEEEEECCHH
T ss_conf 71570688973886526899999973697799962365789999999863138881211432000467100276317589
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCCCCHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEECCHHHC
Q ss_conf 99999999999976998999678989988754439-999999999988999999999999998629-9849994762338
Q gi|254780535|r 68 SVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRAR-YEDWDDVLSVNLTSAFLLTRQLVPLMIRNR-FGRVINITSVVGF 145 (247)
Q Consensus 68 ~~~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~-~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~-~G~IInisS~~~~ 145 (247)
T Consensus 501 ~v~~~f~~v~~~yGGvD~vv~nAGi~~S~p~~~t~r~~~W~l~~di~atG~FLVareA~r~~~~Q~lGG~~VfiaSkNav 580 (709)
T TIGR02632 501 AVKAAFAEVALAYGGVDIVVNNAGIAVSSPLEETERLEEWDLNLDILATGYFLVAREAARLMRKQGLGGNIVFIASKNAV 580 (709)
T ss_pred HHHHHHHHHHHHHCCEEEEEECCCHHCCCCCHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHCCCCCCEEEECCEEEE
T ss_conf 99999999999749847876525301057702322155432012010120035888999999731798556776110001
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCC--CHHHHCC-----------C----------HHH-HH
Q ss_conf 8999857789889999999999999963228599634338817--9344228-----------9----------899-99
Q gi|254780535|r 146 TGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVNCVAPGFIG--SDMTVNL-----------T----------EDQ-KG 201 (247)
Q Consensus 146 ~~~~~~~~Y~~sK~ai~~ltk~lA~e~~~~gIrvN~IaPG~i~--T~~~~~~-----------~----------~~~-~~ 201 (247)
T Consensus 581 ~A~kn~~AY~aaKA~~~Hl~R~LA~Ela~~GiRVNtV~PdaVl~GS~if~~~W~~~raA~ygi~ftadePtdvl~d~L~~ 660 (709)
T TIGR02632 581 VAGKNASAYSAAKAAEAHLARCLAAELAELGIRVNTVNPDAVLRGSGIFDGEWREERAAAYGIPFTADEPTDVLADKLEE 660 (709)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf 11788405558999999899999981478864640106500110552153367888887707743468723578888988
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHHHCHHHCCCCCCEEEECCCEE
Q ss_conf 99853979888579999999999738887877886899689504
Q gi|254780535|r 202 KIISSIPMKRMGAVDDIAAAVLYLSSLEASYVTGQTIHVNGGMA 245 (247)
Q Consensus 202 ~~~~~~pl~R~~~pedia~~v~fL~S~~~~~itG~~i~vDGG~~ 245 (247)
T Consensus 661 fY~~RslLk~~v~p~d~AeAvf~L~S~~~~~tTG~~i~VDaG~~ 704 (709)
T TIGR02632 661 FYAKRSLLKREVLPADIAEAVFFLASDKLEKTTGLIITVDAGVA 704 (709)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCCCCC
T ss_conf 98754323776680889999999734510102786640377752