HHsearch alignment for GI: 254780535 and conserved domain: TIGR02813
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA; InterPro: IPR004432 Members of this entry represent PfaA, which is involved in omega-3 polyunsaturated fatty acid biosynthesis, for example PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is found together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologues of PfaA, also included in this entry, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis; an alternative to the more familiar iterated mechanism of chain extension and desaturation, and like PfaA the more distant homologues are likewise found near genes for homologues of PfaB, PfaC, and/or PfaD..
Probab=99.21 E-value=8.9e-10 Score=82.99 Aligned_cols=198 Identities=23% Similarity=0.292 Sum_probs=144.8
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEECCHH------------------------------------------
Q ss_conf 8778999389985789999999988-997999978989------------------------------------------
Q gi|254780535|r 5 TGKKALVTGASGSIGLAIAKILYKQ-GASVGLHGTSQE------------------------------------------ 41 (247)
Q Consensus 5 ~~K~~lITG~~~GIG~~ia~~la~~-Ga~V~i~~r~~~------------------------------------------ 41 (247)
T Consensus 2158 ~~~~~LV~GGAKGVT~~C~l~lAK~~~a~FiL~GRS~~~~~~~~P~WA~G~s~~~~LK~AA~~~l~~~GeKPTP~~V~~l 2237 (2773)
T TIGR02813 2158 KDDKVLVTGGAKGVTFECALELAKQCQAHFILAGRSSHIADDELPSWAQGKSDENELKKAAIQHLQASGEKPTPKKVDAL 2237 (2773)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHH
T ss_conf 68717883787622599999998753211455033045552068741046503567899999999863899885225866
Q ss_pred --------HHHHHHHHHHCCC-CEEEEECCCCCHHHHHHHHHHHHHHHC----CCCEEEECCCCCCCCCHHHCCHHHHHH
Q ss_conf --------9999999721389-489998889999999999999999976----998999678989988754439999999
Q gi|254780535|r 42 --------KLEKVAKNFDDVD-RFLLFPANFSDRVSVEYLSKRVNEEMG----GVDILVNNAGIVRDSLFMRARYEDWDD 108 (247)
Q Consensus 42 --------~l~~~~~~~~~~g-~~~~~~~Dv~~~~~~~~~~~~~~~~~g----~iDilVnnAg~~~~~~~~~~~~~~w~~ 108 (247)
T Consensus 2238 v~PV~s~~EI~~aLaA~~a~Ga~A~Y~s~DV~~s~sva~~~~~~~~~~g~gsl~iTGiIHGAGVLADK~I~~KTL~E~~~ 2317 (2773)
T TIGR02813 2238 VKPVLSSLEIAQALAAFKAVGASAEYLSVDVTDSVSVAATVAPLNKLLGQGSLDITGIIHGAGVLADKHIQDKTLEEFNA 2317 (2773)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 41235457899999999851887147886048847899999999986168762100366441134234453401787753
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCC
Q ss_conf 99998899999999999999862998499947623388999857789889999999999999963228599634338817
Q gi|254780535|r 109 VLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVNCVAPGFIG 188 (247)
Q Consensus 109 ~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~~~~~~~~~~~~Y~~sK~ai~~ltk~lA~e~~~~gIrvN~IaPG~i~ 188 (247)
T Consensus 2318 VYgTKv~GL~~lL~a~~~----~~~K~~~lFSSAAGFYGN~GQSDYa~sNdILNKa----Al~l~~~~P~A~V~SF~WGP 2389 (2773)
T TIGR02813 2318 VYGTKVDGLESLLAALNA----EKIKLVALFSSAAGFYGNTGQSDYAMSNDILNKA----ALQLKARNPEAKVLSFNWGP 2389 (2773)
T ss_pred HHCCHHHHHHHHHHHHCH----HCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHH----HHHHHHHCCCCEEEECCCCC
T ss_conf 520016889999975143----1065778751102457888853177888888899----99998619973387314788
Q ss_pred CH--HHHCCCHHHH-HHHHHCCCCC
Q ss_conf 93--4422898999-9998539798
Q gi|254780535|r 189 SD--MTVNLTEDQK-GKIISSIPMK 210 (247)
Q Consensus 189 T~--~~~~~~~~~~-~~~~~~~pl~ 210 (247)
T Consensus 2390 WDGGMV~p~LKkMF~DRGVYvIPL~ 2414 (2773)
T TIGR02813 2390 WDGGMVNPALKKMFIDRGVYVIPLD 2414 (2773)
T ss_pred CCCCCCCHHHHHHHHCCCCEEEECH
T ss_conf 8876227678744303860785003