HHsearch alignment for GI: 254780535 and conserved domain: TIGR03466
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=99.62 E-value=1.2e-13 Score=107.78 Aligned_cols=208 Identities=20% Similarity=0.199 Sum_probs=142.4
Q ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 89993899857899999999889979999789899999999721389489998889999999999999999976998999
Q gi|254780535|r 8 KALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEMGGVDILV 87 (247)
Q Consensus 8 ~~lITG~~~GIG~~ia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~g~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDilV 87 (247)
T Consensus 2 riLVTGgtGfiG~~l~~~L~~~G~~V~~l~r~~~~~~~~----~~~-~~~~~~gDl~d~~~~~~~~~-------~~d~Vi 69 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLERGEEVRVLVRPTSDRRNL----EGL-DVEIVEGDLRDPASLRKALA-------GCRALF 69 (328)
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHH----CCC-CCEEEEEECCCHHHHHHHHH-------CCCEEE
T ss_conf 499986777999999999997849899998999865565----217-97799820799999999971-------785897
Q ss_pred ECCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC---------------CCH
Q ss_conf 67898998875443999999999998899999999999999862998499947623388999---------------857
Q gi|254780535|r 88 NNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNA---------------GQV 152 (247)
Q Consensus 88 nnAg~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~~~~~~~~---------------~~~ 152 (247)
T Consensus 70 H~Aa~~~~---~---~~~~~~~~~~Nv~gt~nll~aa~----~~~v~r~V~~SS~~v~g~~~~~~~~~E~~p~~~~~~~~ 139 (328)
T TIGR03466 70 HVAADYRL---W---APDPEEMYRANVEGTRNLLRAAL----EAGVERVVYTSSVATLGVPGDGTPADETTPSSLEKMIG 139 (328)
T ss_pred EECCCCCC---C---CCCHHHHHHHHHHHHHHHHHHHH----HCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCC
T ss_conf 61342344---6---79989999999999999999999----72987431563357855788887402567654566657
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCH--HHHH-HHHHCCCCC-----CCCCHHHHHHHHHH
Q ss_conf 789889999999999999963228599634338817934422898--9999-998539798-----88579999999999
Q gi|254780535|r 153 NYCAAKSGLTGFTKALAQETGRRNVTVNCVAPGFIGSDMTVNLTE--DQKG-KIISSIPMK-----RMGAVDDIAAAVLY 224 (247)
Q Consensus 153 ~Y~~sK~ai~~ltk~lA~e~~~~gIrvN~IaPG~i~T~~~~~~~~--~~~~-~~~~~~pl~-----R~~~pedia~~v~f 224 (247)
T Consensus 140 ~Y~~sK~~aE~~~~~~~~~---~gl~~~ilRp~~v~Gp~d~~~~~~~~~i~~~~~~~~p~~~~~g~~~v~V~Dva~a~~~ 216 (328)
T TIGR03466 140 HYKRSKFLAEEAALRMIAE---KGLPVVIVNPSTPIGPRDIKPTPTGRIIVDFLRGKMPAYVDTGLNLVHVDDVAEGHLL 216 (328)
T ss_pred HHHHHHHHHHHHHHHHHHH---CCCCEEEECCCCEECCCCCCCCCHHHHHHHHHCCCCCEEECCCCEEEEEHHHHHHHHH
T ss_conf 7889999999999999997---2997599777856889988887669999999759997675587189983899999999
Q ss_pred HHCHHHCCCCCCEEEECCC
Q ss_conf 7388878778868996895
Q gi|254780535|r 225 LSSLEASYVTGQTIHVNGG 243 (247)
Q Consensus 225 L~S~~~~~itG~~i~vDGG 243 (247)
T Consensus 217 a~~-~--~~~g~~y~~~~~ 232 (328)
T TIGR03466 217 ALE-R--GRIGERYILGGE 232 (328)
T ss_pred HHH-C--CCCCCEEEECCC
T ss_conf 975-7--998987997999