HHsearch alignment for GI: 254780535 and conserved domain: pfam04321
>pfam04321 RmlD_sub_bind RmlD substrate binding domain. L-rhamnose is a saccharide required for the virulence of some bacteria. Its precursor, dTDP-L-rhamnose, is synthesized by four different enzymes the final one of which is RmlD. The RmlD substrate binding domain is responsible for binding a sugar nucleotide.
Probab=99.51 E-value=6.5e-12 Score=96.72 Aligned_cols=193 Identities=19% Similarity=0.196 Sum_probs=128.3
Q ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 99938998578999999998899799997898999999997213894899988899999999999999999769989996
Q gi|254780535|r 9 ALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEMGGVDILVN 88 (247)
Q Consensus 9 ~lITG~~~GIG~~ia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~g~~~~~~~Dv~~~~~~~~~~~~~~~~~g~iDilVn 88 (247)
T Consensus 1 ILVtG~~GfiGs~l~~~L~~~g~~v~~~~r~--------------------~~D~~d~~~l~~~~~~~-----~pd~Vih 55 (284)
T pfam04321 1 ILVTGANGQLGRELTRLLAERGVEVVALDRP--------------------ELDLTDPEAVAALVREA-----RPDVVVN 55 (284)
T ss_pred EEEECCCCHHHHHHHHHHHHCCCEEEEECCC--------------------CCCCCCHHHHHHHHHHC-----CCCEEEE
T ss_conf 6996489989999999998689989995486--------------------25788999999999864-----9979997
Q ss_pred CCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHCCCCC-----------CCHHHHHH
Q ss_conf 7898998875443999999999998899999999999999862998499947623388999-----------85778988
Q gi|254780535|r 89 NAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNA-----------GQVNYCAA 157 (247)
Q Consensus 89 nAg~~~~~~~~~~~~~~w~~~~~~Nl~~~~~~~~~~~~~m~~~~~G~IInisS~~~~~~~~-----------~~~~Y~~s 157 (247)
T Consensus 56 lAa~~~~~~----~~~~~~~~~~~Nv~~t~~l~~~~~~----~~-~~~i~~Ss~~Vy~g~~~~p~~E~~~~~P~~~Yg~s 126 (284)
T pfam04321 56 AAAYTAVDK----AESEPELAYAVNALGPGNLAEACAA----RG-APLIHISTDYVFDGAKGGPYREDDPTGPLNVYGRT 126 (284)
T ss_pred CCCCCCCHH----HHHCHHHHHHHHHHHHHHHHHHHHH----CC-CCEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 241355567----7748888998759999999999874----49-85798417530006899885457777898801657
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHCCCHHHHHHHHHCCCC-------CCCCCHHHHHHHHHHHHCHH-
Q ss_conf 9999999999999963228599634338817934422898999999853979-------88857999999999973888-
Q gi|254780535|r 158 KSGLTGFTKALAQETGRRNVTVNCVAPGFIGSDMTVNLTEDQKGKIISSIPM-------KRMGAVDDIAAAVLYLSSLE- 229 (247)
Q Consensus 158 K~ai~~ltk~lA~e~~~~gIrvN~IaPG~i~T~~~~~~~~~~~~~~~~~~pl-------~R~~~pedia~~v~fL~S~~- 229 (247)
T Consensus 127 K~~~E~~~~~~~~~-------~~IlR~~~vyG~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~~~v~D~a~~~~~~~e~~~ 199 (284)
T pfam04321 127 KLAGEQAVLAANPR-------HLILRTAWVYGEYGNNFVKTMLRLAAERDELRVVDDQLGSPTSARDLADALLALIRKRL 199 (284)
T ss_pred HHHHHHHHHHHCCC-------CEEEEEEEECCCCCCCHHHHHHHHHHCCCCCEEECCCCCCCEEHHHHHHHHHHHHHHCC
T ss_conf 58999999972534-------60787734428888788999999986289826853756896989999999999998203
Q ss_pred -HCCCCCCEEEECCC
Q ss_conf -78778868996895
Q gi|254780535|r 230 -ASYVTGQTIHVNGG 243 (247)
Q Consensus 230 -~~~itG~~i~vDGG 243 (247)
T Consensus 200 ~~~~~~g-iyNi~~~ 213 (284)
T pfam04321 200 RGPALAG-TYHLAGS 213 (284)
T ss_pred CCCCCCC-CEEECCC
T ss_conf 3777776-1374189