RPSBLAST alignment for GI: 254780535 and conserved domain: TIGR01832
>gnl|CDD|130891 TIGR01832, kduD, 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. Length = 248
Score = 178 bits (452), Expect = 2e-45
Identities = 95/247 (38%), Positives = 137/247 (55%), Gaps = 8/247 (3%)
Query: 2 FDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQ--EKLEKVAKNFDDVDRFLLF 59
F L GK ALVTGA+ +G IA L + GA + G S+ E ++V RFL
Sbjct: 1 FSLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPSETQQQVEA---LGRRFLSL 57
Query: 60 PANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFL 119
A+ SD +++ L EE G +DILVNNAGI+R + +DWDDV++VNL S F
Sbjct: 58 TADLSDIEAIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFF 117
Query: 120 LTRQLVPLMIRN-RFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVT 178
LT+ ++ R G++INI S++ F G +Y A+K G+ G TK LA E + +
Sbjct: 118 LTQAAAKHFLKQGRGGKIINIASMLSFQGGIRVPSYTASKHGVAGLTKLLANEWAAKGIN 177
Query: 179 VNCVAPGFIGSDMTVNLTEDQK--GKIISSIPMKRMGAVDDIAAAVLYLSSLEASYVTGQ 236
VN +APG++ ++ T L D+ I+ IP R G DDI ++L+S + YV G
Sbjct: 178 VNAIAPGYMATNNTQALRADEDRNAAILERIPAGRWGTPDDIGGPAVFLASSASDYVNGY 237
Query: 237 TIHVNGG 243
T+ V+GG
Sbjct: 238 TLAVDGG 244