RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780535|ref|YP_003064948.1|
3-ketoacyl-(acyl-carrier-protein) reductase [Candidatus Liberibacter
asiaticus str. psy62]
         (247 letters)



>gnl|CDD|36414 KOG1200, KOG1200, KOG1200, Mitochondrial/plastidial
           beta-ketoacyl-ACP reductase [Lipid transport and
           metabolism].
          Length = 256

 Score =  207 bits (527), Expect = 3e-54
 Identities = 99/245 (40%), Positives = 142/245 (57%), Gaps = 2/245 (0%)

Query: 4   LTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANF 63
           L  K A VTG S  IG AIA++L K+GA V +        E  A +         F  + 
Sbjct: 12  LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGYGDHSAFSCDV 71

Query: 64  SDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQ 123
           S    V+   + + + +G   +LVN AGI RD L +R + E WD V++VNLT  FL+T+ 
Sbjct: 72  SKAHDVQNTLEEMEKSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQA 131

Query: 124 LV--PLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVNC 181
            V   +M + +   +IN++S+VG  GN GQ NY A+K G+ GFTK  A+E  R+N+ VN 
Sbjct: 132 AVRAMVMNQQQGLSIINVSSIVGKIGNFGQTNYAASKGGVIGFTKTAARELARKNIRVNV 191

Query: 182 VAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAVDDIAAAVLYLSSLEASYVTGQTIHVN 241
           V PGFI + MT  +      KI+  IPM R+G  +++A  VL+L+S  +SY+TG T+ V 
Sbjct: 192 VLPGFIATPMTEAMPPKVLDKILGMIPMGRLGEAEEVANLVLFLASDASSYITGTTLEVT 251

Query: 242 GGMAM 246
           GG+AM
Sbjct: 252 GGLAM 256


>gnl|CDD|31231 COG1028, FabG, Dehydrogenases with different specificities (related
           to short-chain alcohol dehydrogenases) [Secondary
           metabolites biosynthesis, transport, and catabolism /
           General function prediction only].
          Length = 251

 Score =  190 bits (482), Expect = 5e-49
 Identities = 112/254 (44%), Positives = 148/254 (58%), Gaps = 13/254 (5%)

Query: 2   FDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHG--TSQEKLEKVAKNFDD--VDRFL 57
            DL+GK ALVTGAS  IG AIA+ L ++GA V +    + +E  E +A    +    R  
Sbjct: 1   MDLSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEEAAEALAAAIKEAGGGRAA 60

Query: 58  LFPANFSDRV-SVEYLSKRVNEEMGGVDILVNNAGIVR-DSLFMRARYEDWDDVLSVNLT 115
              A+ SD   SVE L     EE G +DILVNNAGI   D+       EDWD V+ VNL 
Sbjct: 61  AVAADVSDDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLL 120

Query: 116 SAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRR 175
            AFLLTR  +PLM +    R++NI+SV G  G  GQ  Y A+K+ L G TKALA E   R
Sbjct: 121 GAFLLTRAALPLMKK---QRIVNISSVAGLGGPPGQAAYAASKAALIGLTKALALELAPR 177

Query: 176 NVTVNCVAPGFIGSDMTVNLTED---QKGKIISSIPMKRMGAVDDIAAAVLYL-SSLEAS 231
            + VN VAPG+I + MT  L         ++ + IP+ R+G  +++AAAV +L S   AS
Sbjct: 178 GIRVNAVAPGYIDTPMTAALESAELEALKRLAARIPLGRLGTPEEVAAAVAFLASDEAAS 237

Query: 232 YVTGQTIHVNGGMA 245
           Y+TGQT+ V+GG+ 
Sbjct: 238 YITGQTLPVDGGLL 251


>gnl|CDD|35944 KOG0725, KOG0725, KOG0725, Reductases with broad range of substrate
           specificities [General function prediction only].
          Length = 270

 Score =  159 bits (404), Expect = 5e-40
 Identities = 89/259 (34%), Positives = 140/259 (54%), Gaps = 15/259 (5%)

Query: 1   MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAK----NFDDVDRF 56
              L GK ALVTG S  IG AIA +L K GA V + G S+E+LE+ A+          + 
Sbjct: 3   GGRLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKV 62

Query: 57  LLFPANFSDRVSVEYL-SKRVNEEMGGVDILVNNAGIVR-DSLFMRARYEDWDDVLSVNL 114
           L    + S  V VE L    V +  G +DILVNNAG +      +    E +D +++ NL
Sbjct: 63  LAIVCDVSKEVDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNL 122

Query: 115 T-SAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQ-VNYCAAKSGLTGFTKALAQET 172
             SAF L +   P++ +++ G ++NI+SV G     G  V Y  +K+ L   T++LA+E 
Sbjct: 123 RGSAFCLKQAARPMLKKSKGGSIVNISSVAGVGPGPGSGVAYGVSKAALLQLTRSLAKEL 182

Query: 173 GRRNVTVNCVAPGFIGSDMTVNLTEDQKGKII-------SSIPMKRMGAVDDIAAAVLYL 225
            +  + VN V+PG + + +     +D + +          ++P+ R+G  +++A A  +L
Sbjct: 183 AKHGIRVNSVSPGLVKTSLRAAGLDDGEMEEFKEATDSKGAVPLGRVGTPEEVAEAAAFL 242

Query: 226 SSLEASYVTGQTIHVNGGM 244
           +S +ASY+TGQTI V+GG 
Sbjct: 243 ASDDASYITGQTIIVDGGF 261


>gnl|CDD|30648 COG0300, DltE, Short-chain dehydrogenases of various substrate
           specificities [General function prediction only].
          Length = 265

 Score =  150 bits (379), Expect = 4e-37
 Identities = 65/226 (28%), Positives = 113/226 (50%), Gaps = 6/226 (2%)

Query: 1   MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDV--DRFLL 58
              + GK AL+TGAS  IG  +AK L ++G ++ L    ++KLE +AK  +D       +
Sbjct: 1   PGPMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEV 60

Query: 59  FPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAF 118
            PA+ SD  ++E L   + E  G +D+LVNNAG      F+    ++ ++++ +N+ +  
Sbjct: 61  IPADLSDPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALT 120

Query: 119 LLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVT 178
            LT+ ++P M+    G +INI S  G         Y A K+ +  F++AL +E     V 
Sbjct: 121 RLTKAVLPGMVERGAGHIINIGSAAGLIPTPYMAVYSATKAFVLSFSEALREELKGTGVK 180

Query: 179 VNCVAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAVDDIAAAVLY 224
           V  V PG   ++      + +   +    P + + + +D+A A L 
Sbjct: 181 VTAVCPGPTRTEF----FDAKGSDVYLLSPGELVLSPEDVAEAALK 222


>gnl|CDD|33946 COG4221, COG4221, Short-chain alcohol dehydrogenase of unknown
           specificity [General function prediction only].
          Length = 246

 Score =  139 bits (352), Expect = 6e-34
 Identities = 72/233 (30%), Positives = 113/233 (48%), Gaps = 4/233 (1%)

Query: 1   MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFP 60
           M  L GK AL+TGAS  IG A A+ L + GA V L    +E+LE +A         L   
Sbjct: 1   MTTLKGKVALITGASSGIGEATARALAEAGAKVVLAARREERLEALADEIGA-GAALALA 59

Query: 61  ANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLL 120
            + +DR +VE   + + EE G +DILVNNAG+        A  +DWD ++  N+      
Sbjct: 60  LDVTDRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNG 119

Query: 121 TRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVN 180
           TR ++P M+  + G +IN+ S+ G     G   Y A K+ +  F+  L QE     + V 
Sbjct: 120 TRAVLPGMVERKSGHIINLGSIAGRYPYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVT 179

Query: 181 CVAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAV--DDIAAAVLYLSSLEAS 231
            ++PG + +     +  +   +    +  K   A+  +DIA AVL+ ++    
Sbjct: 180 VISPGLVETTEFSTVRFEGDDERADKV-YKGGTALTPEDIAEAVLFAATQPQH 231


>gnl|CDD|36419 KOG1205, KOG1205, KOG1205, Predicted dehydrogenase [Secondary
           metabolites biosynthesis, transport and catabolism].
          Length = 282

 Score =  135 bits (340), Expect = 1e-32
 Identities = 71/230 (30%), Positives = 107/230 (46%), Gaps = 5/230 (2%)

Query: 1   MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDV---DRFL 57
           M  L GK  L+TGAS  IG A+A  L K+GA + L      +LE+VA+    +   ++ L
Sbjct: 7   MERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVL 66

Query: 58  LFPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSA 117
           +   + SD  SV+   +      G VD+LVNNAGI           ED  +V+  N+   
Sbjct: 67  VLQLDVSDEESVKKFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGT 126

Query: 118 FLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGR-RN 176
             LT+  +P M +   G ++ I+S+ G      +  Y A+K  L GF + L QE      
Sbjct: 127 VYLTKAALPSMKKRNDGHIVVISSIAGKMPLPFRSIYSASKHALEGFFETLRQELIPLGT 186

Query: 177 VTVNCVAPGFIGSDMTVNLTEDQKGKIISSIPMKRMGAVDDIAAAVLYLS 226
           + +  V+PG I ++ T      ++GK     P  R   V D  A    +S
Sbjct: 187 IIIILVSPGPIETEFTGKELLGEEGKSQQG-PFLRTEDVADPEAVAYAIS 235


>gnl|CDD|36415 KOG1201, KOG1201, KOG1201, Hydroxysteroid 17-beta dehydrogenase 11
           [Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 300

 Score =  125 bits (315), Expect = 1e-29
 Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 3/192 (1%)

Query: 3   DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPAN 62
            ++G+  L+TG    +G  IA    K+GA + L   +++  E+  K    +     +  +
Sbjct: 35  SVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCD 94

Query: 63  FSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTR 122
            SDR  +  L+K+V +E+G VDILVNNAGIV     +    E+      VN  + F  T+
Sbjct: 95  ISDREEIYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTK 154

Query: 123 QLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQET---GRRNVTV 179
             +P M+ N  G ++ I SV G  G AG  +YCA+K    GF ++L+ E    G+  +  
Sbjct: 155 AFLPKMLENNNGHIVTIASVAGLFGPAGLADYCASKFAAVGFHESLSMELRALGKDGIKT 214

Query: 180 NCVAPGFIGSDM 191
             V P FI + M
Sbjct: 215 TLVCPYFINTGM 226


>gnl|CDD|143883 pfam00106, adh_short, short chain dehydrogenase.  This family
           contains a wide variety of dehydrogenases.
          Length = 167

 Score =  118 bits (299), Expect = 1e-27
 Identities = 46/169 (27%), Positives = 77/169 (45%), Gaps = 8/169 (4%)

Query: 7   KKALVTGASGSIGLAIAKILYKQGAS----VGLHGTSQEKLEKVAKNFDDVDRFLLFPAN 62
              L+TG +G +GLA+A+ L  +GA     V   G +    E VA+         +   +
Sbjct: 1   GTVLITGGTGGLGLALARWLAAEGARHLVLVSRRGDAPGAAELVAELEALGAEVTVAACD 60

Query: 63  FSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTR 122
            +DR ++  L   +   +G +D +V+NAG++ D        E ++ VL+  +T A+ L  
Sbjct: 61  VADRDALAALLAALPAALGPLDGVVHNAGVLDDGPLEELTPERFERVLAPKVTGAWNLHE 120

Query: 123 QLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQE 171
             + L      G  +  +SV G  G+ GQ NY AA + L    +    E
Sbjct: 121 LTLDL----DLGAFVLFSSVAGVLGSPGQANYAAANAALDALAEHRRAE 165


>gnl|CDD|36421 KOG1207, KOG1207, KOG1207, Diacetyl reductase/L-xylulose reductase
           [Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 245

 Score =  114 bits (286), Expect = 3e-26
 Identities = 78/245 (31%), Positives = 115/245 (46%), Gaps = 11/245 (4%)

Query: 3   DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPAN 62
            L G   LVTGA   IG  I   L K GA V     ++  L  + K        L+ P  
Sbjct: 4   SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKE----TPSLIIPIV 59

Query: 63  FSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTR 122
               +S      ++   +  +D LVNNAG+  +  F     + +D   +VN+ +  L+  
Sbjct: 60  GD--LSAWEALFKLLVPVFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVA- 116

Query: 123 QLVP--LMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVN 180
           QLV   L+ R   G ++N++S            YCA K+ L   TK LA E G + + VN
Sbjct: 117 QLVARNLVDRQIKGAIVNVSSQASIRPLDNHTVYCATKAALDMLTKCLALELGPQKIRVN 176

Query: 181 CVAPGFIGSDMTVNLTED--QKGKIISSIPMKRMGAVDDIAAAVLYLSSLEASYVTGQTI 238
            V P  + +DM  +   D  +K K++  IP+KR   VD++  AVL+L S  +S  TG T+
Sbjct: 177 SVNPTVVMTDMGRDNWSDPDKKKKMLDRIPLKRFAEVDEVVNAVLFLLSDNSSMTTGSTL 236

Query: 239 HVNGG 243
            V GG
Sbjct: 237 PVEGG 241


>gnl|CDD|39371 KOG4169, KOG4169, KOG4169, 15-hydroxyprostaglandin dehydrogenase
           and related dehydrogenases [Lipid transport and
           metabolism, General function prediction only].
          Length = 261

 Score =  109 bits (275), Expect = 6e-25
 Identities = 67/204 (32%), Positives = 107/204 (52%), Gaps = 17/204 (8%)

Query: 2   FDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRF---LL 58
            DLTGK ALVTG +G IGLA +K L ++G  V +   S+E  E +AK    ++     + 
Sbjct: 1   MDLTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEENPEAIAK-LQAINPSVSVIF 59

Query: 59  FPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAF 118
              + ++R  +E    ++    G +DIL+N AGI+ D        +DW+  ++VNLT   
Sbjct: 60  IKCDVTNRGDLEAAFDKILATFGTIDILINGAGILDD--------KDWERTINVNLTGVI 111

Query: 119 LLTRQLVPLMIRNRFGR---VINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQET--G 173
             T+  +P M + + G+   ++N++SV G         Y A+K+G+ GFT++LA      
Sbjct: 112 NGTQLALPYMDKKQGGKGGIIVNMSSVAGLDPMPVFPVYAASKAGVVGFTRSLADLAYYQ 171

Query: 174 RRNVTVNCVAPGFIGSDMTVNLTE 197
           R  V  N V PGF  +D+  N+  
Sbjct: 172 RSGVRFNAVCPGFTRTDLAENIDA 195


>gnl|CDD|36413 KOG1199, KOG1199, KOG1199, Short-chain alcohol
           dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary
           metabolites biosynthesis, transport and catabolism].
          Length = 260

 Score =  107 bits (269), Expect = 2e-24
 Identities = 78/254 (30%), Positives = 111/254 (43%), Gaps = 17/254 (6%)

Query: 6   GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSD 65
           G  ALVTG +  +G A A+ L KQGASV L    Q K   VAK       F   PA+ + 
Sbjct: 9   GLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGADVAKELGGKVVFT--PADVTS 66

Query: 66  RVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLF------MRARYEDWDDVLSVNLTSAFL 119
              V     +   + G +D LVN AGI                 ED+  V+ VN+   F 
Sbjct: 67  EKDVRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFN 126

Query: 120 LTRQLVPLMIRN------RFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETG 173
           + R    LM  N      + G +IN  SV  F G  GQ  Y A+K  + G T  +A++  
Sbjct: 127 VIRLGAGLMGENEPDQNGQRGVIINTASVAAFDGQTGQAAYSASKGAIVGMTLPIARDLA 186

Query: 174 RRNVTVNCVAPGFIGSDMTVNLTEDQKGKIISSIPM-KRMGAVDDIAAAVLYLSSLEASY 232
              +  N +APG   + +  +L E  K  +   IP   R+G   + A  V  +  +E  Y
Sbjct: 187 GDGIRFNTIAPGLFDTPLLSSLPEKVKSFLAQLIPFPSRLGHPHEYAHLVQAI--IENPY 244

Query: 233 VTGQTIHVNGGMAM 246
           + G+ I  +G + M
Sbjct: 245 LNGEVIRFDGALRM 258


>gnl|CDD|36232 KOG1014, KOG1014, KOG1014, 17 beta-hydroxysteroid dehydrogenase
           type 3, HSD17B3 [Lipid transport and metabolism].
          Length = 312

 Score =  105 bits (264), Expect = 1e-23
 Identities = 57/193 (29%), Positives = 95/193 (49%), Gaps = 7/193 (3%)

Query: 5   TGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANF- 63
            G  A+VTGA+  IG A A+ L K+G +V L   +QEKLE VAK  ++  +  +      
Sbjct: 48  LGSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEKLEAVAKEIEEKYKVEVRIIAID 107

Query: 64  --SDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYED--WDDVLSVNLTSAFL 119
                   E L +++      V ILVNN G+  D      +Y +    ++++VN+ S  L
Sbjct: 108 FTKGDEVYEKLLEKLAG--LDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTL 165

Query: 120 LTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTV 179
           LT+ ++P M+  + G ++NI S  G         Y A+K+ +  F++ L +E   + + V
Sbjct: 166 LTQLILPGMVERKKGIIVNIGSFAGLIPTPLLSVYSASKAFVDFFSRCLQKEYESKGIFV 225

Query: 180 NCVAPGFIGSDMT 192
             V P  + + M 
Sbjct: 226 QSVIPYLVATKMA 238


>gnl|CDD|36422 KOG1208, KOG1208, KOG1208, Dehydrogenases with different
           specificities (related to short-chain alcohol
           dehydrogenases) [Secondary metabolites biosynthesis,
           transport and catabolism].
          Length = 314

 Score = 95.4 bits (237), Expect = 1e-20
 Identities = 52/203 (25%), Positives = 94/203 (46%), Gaps = 19/203 (9%)

Query: 1   MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAK---NFDDVDRFL 57
             DL+GK ALVTGA+  IG   A+ L  +GA V L   ++E+ E+  +         +  
Sbjct: 30  GIDLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIR 89

Query: 58  LFPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSA 117
           +   + S   SV   ++   ++ G +D+L+NNAG++     +    +  +   + N    
Sbjct: 90  VIQLDLSSLKSVRKFAEEFKKKEGPLDVLINNAGVMAPPFSLTK--DGLELTFATNYLGH 147

Query: 118 FLLTRQLVPLMIRNRFGRVINITSVVG-FTGNAGQVN------------YCAAKSGLTGF 164
           FLLT  L+PL+ R+   R++N++S++G    +   ++            Y  +K      
Sbjct: 148 FLLTELLLPLLKRSAPSRIVNVSSILGGGKIDLKDLSGEKAKLYSSDAAYALSKLANVLL 207

Query: 165 TKALAQETGRRNVTVNCVAPGFI 187
              LA+   ++ VT   V PG +
Sbjct: 208 ANELAKRL-KKGVTTYSVHPGVV 229


>gnl|CDD|36424 KOG1210, KOG1210, KOG1210, Predicted 3-ketosphinganine reductase
           [Secondary metabolites biosynthesis, transport and
           catabolism].
          Length = 331

 Score = 91.5 bits (227), Expect = 2e-19
 Identities = 47/183 (25%), Positives = 77/183 (42%), Gaps = 4/183 (2%)

Query: 7   KKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDD---VDRFLLFPANF 63
           +  L+TG S  +GLA+A    ++GA V +   S +KL +     +    V+       + 
Sbjct: 34  RHILITGGSSGLGLALALECKREGADVTITARSGKKLLEAKAELELLTQVEDVSYKSVDV 93

Query: 64  SDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQ 123
            D  SV  + + + +  G +D L   AG+    LF     E  + ++ VN      + + 
Sbjct: 94  IDYDSVSKVIEELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKA 153

Query: 124 LVPLM-IRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVNCV 182
               M  R   GR+I ++S +   G  G   Y  +K  L G  +AL QE  +  V V   
Sbjct: 154 AARAMKKREHLGRIILVSSQLAMLGIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLY 213

Query: 183 APG 185
            P 
Sbjct: 214 YPP 216


>gnl|CDD|33748 COG3967, DltE, Short-chain dehydrogenase involved in D-alanine
           esterification of lipoteichoic acid and wall teichoic
           acid (D-alanine transfer protein) [Cell envelope
           biogenesis, outer membrane].
          Length = 245

 Score = 91.1 bits (226), Expect = 2e-19
 Identities = 53/183 (28%), Positives = 93/183 (50%), Gaps = 5/183 (2%)

Query: 4   LTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANF 63
            TG   L+TG +  IGLA+AK   + G +V + G ++E+L +      +         + 
Sbjct: 3   TTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKAENPE---IHTEVCDV 59

Query: 64  SDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRAR--YEDWDDVLSVNLTSAFLLT 121
           +DR S   L + + +E   +++L+NNAGI R+     A    +D +  ++ NL +   LT
Sbjct: 60  ADRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLT 119

Query: 122 RQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVNC 181
             L+P ++R     +IN++S + F   A    YCA K+ +  +T AL ++    +V V  
Sbjct: 120 ALLLPHLLRQPEATIINVSSGLAFVPMASTPVYCATKAAIHSYTLALREQLKDTSVEVIE 179

Query: 182 VAP 184
           +AP
Sbjct: 180 LAP 182


>gnl|CDD|30968 COG0623, FabI, Enoyl-[acyl-carrier-protein].
          Length = 259

 Score = 89.8 bits (223), Expect = 5e-19
 Identities = 63/258 (24%), Positives = 123/258 (47%), Gaps = 24/258 (9%)

Query: 1   MFDLTGKKALVTGASG--SIGLAIAKILYKQGASVGLHGTSQEKLEK-VAKNFDDVDRFL 57
           M  L GK+ L+ G +   SI   IAK L +QGA +       E+LEK V +  +++   L
Sbjct: 1   MGLLEGKRILIMGVANNRSIAWGIAKALAEQGAELAF-TYQGERLEKRVEELAEELGSDL 59

Query: 58  LFPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIV-RDSL---FMRARYEDWDDVLSVN 113
           + P + ++  S++ L   + ++ G +D LV++     ++ L   ++    E +   + ++
Sbjct: 60  VLPCDVTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDIS 119

Query: 114 LTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQV-NY---CAAKSGLTGFTKALA 169
             S   L +   PLM  N  G ++ +T    + G+   V NY     AK+ L    + LA
Sbjct: 120 AYSFTALAKAARPLM--NNGGSILTLT----YLGSERVVPNYNVMGVAKAALEASVRYLA 173

Query: 170 QETGRRNVTVNCVAPGFIGSDMTVNLTEDQKGKIISSI----PMKRMGAVDDIAAAVLYL 225
            + G+  + VN ++ G I +     + +    K++       P++R   ++++     +L
Sbjct: 174 ADLGKEGIRVNAISAGPIRTLAASGIGD--FRKMLKENEANAPLRRNVTIEEVGNTAAFL 231

Query: 226 SSLEASYVTGQTIHVNGG 243
            S  +S +TG+ I+V+ G
Sbjct: 232 LSDLSSGITGEIIYVDSG 249


>gnl|CDD|36823 KOG1610, KOG1610, KOG1610, Corticosteroid 11-beta-dehydrogenase and
           related short chain-type dehydrogenases [Secondary
           metabolites biosynthesis, transport and catabolism,
           General function prediction only].
          Length = 322

 Score = 86.1 bits (213), Expect = 8e-18
 Identities = 60/200 (30%), Positives = 95/200 (47%), Gaps = 19/200 (9%)

Query: 3   DLTGKKALVTGASGSIGLAIAKILYKQGASVG---LHGTSQEKLEKVAKNFDDVDRFLLF 59
            L+ K  L+TG     G  +AK L K+G  V    L     E L    K+     R    
Sbjct: 26  SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGAESLRGETKS----PRLRTL 81

Query: 60  PANFSDRVSVEYLSKRVNEEMG--GVDILVNNAGIVR-----DSLFMRARYEDWDDVLSV 112
             + +   SV+  ++ V + +G  G+  LVNNAGI       + L +    ED+  VL+V
Sbjct: 82  QLDVTKPESVKEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTV----EDYRKVLNV 137

Query: 113 NLTSAFLLTRQLVPLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQET 172
           NL     +T+  +PL+ R R GRV+N++SV+G         YC +K  +  F+ +L +E 
Sbjct: 138 NLLGTIRVTKAFLPLLRRAR-GRVVNVSSVLGRVALPALGPYCVSKFAVEAFSDSLRREL 196

Query: 173 GRRNVTVNCVAPGFIGSDMT 192
               V V+ + PGF  +++ 
Sbjct: 197 RPFGVKVSIIEPGFFKTNLA 216


>gnl|CDD|36418 KOG1204, KOG1204, KOG1204, Predicted dehydrogenase [Secondary
           metabolites biosynthesis, transport and catabolism].
          Length = 253

 Score = 66.5 bits (162), Expect = 6e-12
 Identities = 45/202 (22%), Positives = 84/202 (41%), Gaps = 5/202 (2%)

Query: 1   MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFP 60
           M     K  L+TGAS  IG      +  +      +G ++   E         D F+   
Sbjct: 1   MDLNMRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLAELEGLKVAYGDDFVHVV 60

Query: 61  ANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRD--SLFMR-ARYEDWDDVLSVNLTSA 117
            + ++   +  L +   ++ G  DI+++NAG + D     +     + W     +NL S 
Sbjct: 61  GDITEEQLLGALREAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSM 120

Query: 118 FLLTRQLVPLMIRNRF-GRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRN 176
             L +  +P + ++   G V+N++S+      +    YC++K+    +   LA E    +
Sbjct: 121 VSLVQWALPKLKKSPVNGNVVNVSSLAAVRPFSSWAAYCSSKAARNMYFMVLASEE-PFD 179

Query: 177 VTVNCVAPGFIGSDMTVNLTED 198
           V V   APG + + M V + E 
Sbjct: 180 VRVLNYAPGVVDTQMQVCIRET 201


>gnl|CDD|36824 KOG1611, KOG1611, KOG1611, Predicted short chain-type dehydrogenase
           [General function prediction only].
          Length = 249

 Score = 63.0 bits (153), Expect = 7e-11
 Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 22/206 (10%)

Query: 7   KKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVD----RFLLFPAN 62
           K   +TGA+  IGL + K L K      +  T+++  EK A           R  +   +
Sbjct: 4   KSVFITGANRGIGLGLVKELLKDKGIEVIIATARD-PEKAATELALKSKSDSRVHIIQLD 62

Query: 63  FSDRVSVEYLSKRVNEEMG--GVDILVNNAGIVRD-SLFMRARYEDWDDVLSVNLTSAFL 119
            +   S++   + V + +G  G+++L+NNAGI    +  ++       +    N     L
Sbjct: 63  VTCDESIDNFVQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPIL 122

Query: 120 LTRQLVPLMIRNR-----------FGRVINITSVVGFTG---NAGQVNYCAAKSGLTGFT 165
           LT+  +PL+ +                +INI+S  G  G     G   Y  +K+ L  F 
Sbjct: 123 LTQAFLPLLKKAASKVSGDGLSVSRAAIINISSSAGSIGGFRPGGLSAYRMSKAALNMFA 182

Query: 166 KALAQETGRRNVTVNCVAPGFIGSDM 191
           K+L+ +    ++ V  + PG++ +DM
Sbjct: 183 KSLSVDLKDDHILVVSIHPGWVQTDM 208


>gnl|CDD|36423 KOG1209, KOG1209, KOG1209, 1-Acyl dihydroxyacetone phosphate
           reductase and related dehydrogenases [Secondary
           metabolites biosynthesis, transport and catabolism].
          Length = 289

 Score = 60.4 bits (146), Expect = 5e-10
 Identities = 41/186 (22%), Positives = 70/186 (37%), Gaps = 10/186 (5%)

Query: 9   ALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANF---SD 65
            +   +SG IG A+AK   + G  V       E + ++A  F       L P        
Sbjct: 11  LITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLAIQFG------LKPYKLDVSKP 64

Query: 66  RVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLV 125
              V    +      G +D+L NNAG       + A     +    VN+     + R L 
Sbjct: 65  EEVVTVSGEVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALS 124

Query: 126 PLMIRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVNCVAPG 185
             +I+ + G ++N+ S+ G         Y A+K+ +  + + L  E     V V     G
Sbjct: 125 HFLIKAK-GTIVNVGSLAGVVPFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITG 183

Query: 186 FIGSDM 191
            + +D+
Sbjct: 184 GVATDI 189


>gnl|CDD|133446 cd01078, NAD_bind_H4MPT_DH, NADP binding domain of methylene
          tetrahydromethanopterin dehydrogenase.  Methylene
          Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP
          binding domain. NADP-dependent H4MPT DH catalyzes the
          dehydrogenation of methylene- H4MPT and
          methylene-tetrahydrofolate (H4F) with NADP+ as
          cofactor. H4F and H4MPT are both cofactors that carry
          the one-carbon units between the formyl and methyl
          oxidation level. H4F and H4MPT are structurally
          analogous to each other with respect to the pterin
          moiety, but each has distinct side chain. H4MPT is
          present only in anaerobic methanogenic archaea and
          aerobic methylotrophic proteobacteria. H4MPT seems to
          have evolved independently from H4F and functions as a
          distinct carrier in C1 metabolism. Amino acid DH-like
          NAD(P)-binding domains are members of the Rossmann fold
          superfamily and include glutamate, leucine, and
          phenylalanine DHs, methylene tetrahydrofolate DH,
          methylene-tetrahydromethanopterin DH,
          methylene-tetrahydropholate DH/cyclohydrolase,
          Shikimate DH-like proteins, malate oxidoreductases, and
          glutamyl tRNA reductase. Amino acid DHs catalyze the
          deamination of amino acids to keto acids with NAD(P)+
          as a cofactor. The NAD(P)-binding Rossmann fold
          superfamily includes a wide variety of protein families
          including NAD(P)- binding domains of alcohol DHs,
          tyrosine-dependent oxidoreductases,
          glyceraldehyde-3-phosphate DH, lactate/malate DHs,
          formate/glycerate DHs, siroheme synthases,
          6-phosphogluconate DH, amino acid DHs, repressor rex,
          NAD-binding potassium channel  domain, CoA-binding, and
          ornithine cyclodeaminase-like domains. These domains
          have an alpha-beta-alpha configuration. NAD binding
          involves numerous hydrogen and van der Waals contacts.
          Length = 194

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 3  DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAK 48
          DL GK A+V G +G +G   A +L ++GA V L G   E+ +K A 
Sbjct: 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAAD 70


>gnl|CDD|36691 KOG1478, KOG1478, KOG1478, 3-keto sterol reductase [Lipid transport
           and metabolism].
          Length = 341

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 46/232 (19%), Positives = 81/232 (34%), Gaps = 46/232 (19%)

Query: 7   KKALVTGASGSIGLAIAK-ILYKQGASVGLH----GTSQEKLEKVAKNF-----DDVDRF 56
           K AL+TGA+  +GLAI K +L +   +V L       +  K E V               
Sbjct: 4   KVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMSKAEAVCAALKAFHPKSTIEV 63

Query: 57  LLFPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRD----------SLFMRA----- 101
                + S+  SV   SK + +    +D +  NAGI+ +           LF        
Sbjct: 64  TYVLVDVSNMQSVFRASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMT 123

Query: 102 ------------RYEDWDDVLSVNLTSAFLLTRQLVPLMIRNRFGRVINITSVVG----- 144
                         +   ++   N+   F L R+L PL+  +   +++  +S +      
Sbjct: 124 SPTEGLLTQGKISADGLGEIFETNVFGHFYLIRELEPLLCHSDNPQLVWTSSRMARKKNL 183

Query: 145 ----FTGNAGQVNYCAAKSGLTGFTKALAQETGRRNVTVNCVAPGFIGSDMT 192
               F  + G+  Y ++K        AL +      +    V PG   ++  
Sbjct: 184 SLEDFQHSKGKEPYSSSKRLTDLLHVALNRNFKPLGINQYVVQPGIFTTNSF 235


>gnl|CDD|36715 KOG1502, KOG1502, KOG1502, Flavonol reductase/cinnamoyl-CoA
          reductase [Defense mechanisms].
          Length = 327

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 26/70 (37%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 1  MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGT--SQEKLEKV--AKNFDDVDRF 56
          M    GKK  VTGASG IG  I K+L  +G +V   GT    E  +K    +  +     
Sbjct: 1  MDQDEGKKVCVTGASGFIGSWIVKLLLSRGYTV--RGTVRDPEDEKKTEHLRKLEGAKER 58

Query: 57 L-LFPANFSD 65
          L LF A+  D
Sbjct: 59 LKLFKADLLD 68


>gnl|CDD|30800 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell
           envelope biogenesis, outer membrane / Carbohydrate
           transport and metabolism].
          Length = 314

 Score = 39.6 bits (91), Expect = 0.001
 Identities = 28/142 (19%), Positives = 51/142 (35%), Gaps = 19/142 (13%)

Query: 7   KKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDR 66
            + LVTG +G IG  + + L   G  V      ++ L+ +    + V        + +DR
Sbjct: 1   MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFV------VLDLTDR 54

Query: 67  VSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVP 126
             V+ L+K V       D +++ A          +   ++ DV           T  L+ 
Sbjct: 55  DLVDELAKGVP------DAVIHLAAQSSVPDSNASDPAEFLDV-------NVDGTLNLLE 101

Query: 127 LMIRNRFGRVINITSVVGFTGN 148
                   R +  +SV    G+
Sbjct: 102 AARAAGVKRFVFASSVSVVYGD 123


>gnl|CDD|144821 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family.
           This family of proteins utilize NAD as a cofactor. The
           proteins in this family use nucleotide-sugar substrates
           for a variety of chemical reactions.
          Length = 235

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 29/134 (21%), Positives = 49/134 (36%), Gaps = 17/134 (12%)

Query: 9   ALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVS 68
            LVTG +G IG A+ + L ++G  V + G  +              RF     + +D  +
Sbjct: 1   ILVTGGTGFIGSALVRRLLQEGYEVIVLGRRRRSESLN----TGRIRFRFHEGDLTDPDA 56

Query: 69  VEYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLM 128
           +E L           D +++ A          A +ED  + +  N     L T  L+   
Sbjct: 57  LERL-----LAEVQPDAVIHLAAQSGV----GASFEDPAEFIRAN----VLGTLNLLEAA 103

Query: 129 IRNRFGRVINITSV 142
            R    R +  +S 
Sbjct: 104 RRAGVKRFVFASSS 117


>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family.
           NAD(P)(H)-dependent oxidoreductases are the major
           enzymes in the interconversion of alcohols and
           aldehydes, or ketones. This group contains proteins that
           share the characteristic catalytic and structural
           zinc-binding sites of the zinc-dependent alcohol
           dehydrogenase family.  Alcohol dehydrogenase in the
           liver converts ethanol and NAD+ to acetaldehyde and
           NADH, while in yeast and some other microorganisms ADH
           catalyzes the conversion acetaldehyde to ethanol in
           alcoholic fermentation. ADH is a member of the medium
           chain alcohol dehydrogenase family (MDR), which have a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form.  The NAD(H)-binding region is comprised
           of 2 structurally similar halves, each of which contacts
           a mononucleotide. A GxGxxG motif after the first
           mononucleotide contact half allows the close contact of
           the coenzyme with the ADH backbone. The N-terminal
           catalytic domain has a distant homology to GroES. These
           proteins typically form dimers (typically higher plants,
           mammals) or tetramers (yeast, bacteria), and have 2
           tightly bound zinc atoms per subunit, a catalytic zinc
           at the active site and a structural zinc in a lobe of
           the catalytic domain. NAD(H)-binding occurs in the cleft
           between the catalytic and coenzyme-binding domains at
           the active site, and coenzyme binding induces a
           conformational closing of this cleft. Coenzyme binding
           typically precedes and contributes to substrate binding.
           In human ADH catalysis, the zinc ion helps coordinate
           the alcohol, followed by deprotonation of  a histidine
           (His-51), the ribose of NAD, a serine (Ser-48), then the
           alcohol, which allows the transfer of a hydride to NAD+,
           creating NADH and a zinc-bound aldehyde or ketone. In
           yeast and some bacteria, the active site zinc binds an
           aldehyde, polarizing it, and leading to the reverse
           reaction.
          Length = 332

 Score = 35.8 bits (83), Expect = 0.011
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 13/87 (14%)

Query: 6   GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSD 65
           G   LVTGA G +G+   ++    GA V     S EKL+ + +   D    ++  + FS+
Sbjct: 163 GDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKLKILKELGADY---VIDGSKFSE 219

Query: 66  RVSVEYLSKRVNEEMGGVDILVNNAGI 92
            V          +++GG D+++   G 
Sbjct: 220 DV----------KKLGGADVVIELVGS 236


>gnl|CDD|30949 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent
           oxidoreductases [Energy production and conversion /
           General function prediction only].
          Length = 326

 Score = 35.4 bits (81), Expect = 0.016
 Identities = 35/140 (25%), Positives = 58/140 (41%), Gaps = 16/140 (11%)

Query: 6   GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSD 65
           G+  LV GA+G +G A  ++    GA+V    +S EKLE + +            A+   
Sbjct: 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----------LGADHVI 192

Query: 66  RVSVEYLSKRVNEEMGG--VDILVNNAG--IVRDSLFMRARYEDWDDVLSVNLTSAFLLT 121
               E   ++V E  GG  VD++++  G      SL   A       V    L+    + 
Sbjct: 193 NYREEDFVEQVRELTGGKGVDVVLDTVGGDTFAASLAALAPGGRL--VSIGALSGGPPVP 250

Query: 122 RQLVPLMIRNRFGRVINITS 141
             L+PL+ +    R + + S
Sbjct: 251 LNLLPLLGKRLTLRGVTLGS 270


>gnl|CDD|31283 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases
           [Cell envelope biogenesis, outer membrane / Carbohydrate
           transport and metabolism].
          Length = 588

 Score = 34.5 bits (79), Expect = 0.032
 Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 4   LTGKKALVTGASGSIGLAIAKILYKQGAS----VGLHGTSQEKLEKVAKNFDDVDRFLLF 59
           LTGK  LVTG  GSIG  + + + K                  ++   +      +   +
Sbjct: 248 LTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLIDMELREKFPELKLRFY 307

Query: 60  PANFSDRVSVEYL 72
             +  DR  VE  
Sbjct: 308 IGDVRDRDRVERA 320


>gnl|CDD|133451 cd05212, NAD_bind_m-THF_DH_Cyclohyd_like, NAD(P) binding domain
          of methylene-tetrahydrofolate dehydrogenase and
          methylene-tetrahydrofolate
          dehydrogenase/cyclohydrolase.  NAD(P) binding domains
          of methylene-tetrahydrofolate dehydrogenase (m-THF DH)
          and  m-THF DH/cyclohydrolase bifunctional enzymes
          (m-THF DH/cyclohydrolase). M-THF is a versatile carrier
          of activated one-carbon units. The major one-carbon
          folate donors are N-5 methyltetrahydrofolate,
          N5,N10-m-THF, and N10-formayltetrahydrofolate. The
          oxidation of metabolic intermediate m-THF to m-THF
          requires the enzyme m-THF DH. In addition, most DHs
          also have an associated cyclohydrolase activity which
          catalyzes its hydrolysis to N10-formyltetrahydrofolate.
          m-THF DH is typically found as part of a
          multifunctional protein in eukaryotes. NADP-dependent
          m-THF DH in mammals, birds and yeast are components of
          a trifunctional enzyme with DH, cyclohydrolase, and
          synthetase activities. Certain eukaryotic cells also
          contain homodimeric bifunctional DH/cyclodrolase form.
          In bacteria, mono-functional DH, as well as
          bifunctional DH/cyclodrolase are found. In addition,
          yeast (S. cerevisiae) also express a monofunctional DH.
          M-THF DH, like other amino acid DH-like NAD(P)-binding
          domains, is a member of the Rossmann fold superfamily
          which includes glutamate, leucine, and phenylalanine
          DHs, m-THF DH, methylene-tetrahydromethanopterin DH,
          m-THF DH/cyclohydrolase, Shikimate DH-like proteins,
          malate oxidoreductases, and glutamyl tRNA reductase.
          Amino acid DHs catalyze the deamination of amino acids
          to keto acids with NAD(P)+ as a cofactor. The
          NAD(P)-binding Rossmann fold superfamily includes a
          wide variety of protein families including NAD(P)-
          binding domains of alcohol DHs, tyrosine-dependent
          oxidoreductases, glyceraldehyde-3-phosphate DH,
          lactate/malate DHs, formate/glycerate DHs, siroheme
          synthases, 6-phosphogluconate DH, amino acid DHs,
          repressor rex, NAD-binding potassium channel  domain,
          CoA-binding, and ornithine cyclodeaminase-like domains.
          These domains have an alpha-beta-alpha configuration.
          NAD binding involves numerous hydrogen and van der
          Waals contacts.
          Length = 140

 Score = 32.9 bits (75), Expect = 0.082
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 3  DLTGKKALVTGASGSIGLAIAKILYKQGASV-GLHGTSQEKLEKVAK 48
           L GKK LV G SG +G  +  +L + GA+V      + +   KV  
Sbjct: 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHD 71


>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family.  This
           group contains members identified as related to
           zinc-dependent alcohol dehydrogenase and other members
           of the MDR family. The medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group includes
           various activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones. Active site zinc has a
           catalytic role, while structural zinc aids in stability.
            ADH-like proteins typically form dimers (typically
           higher plants, mammals) or tetramers (yeast, bacteria),
           and generally have 2 tightly bound zinc atoms per
           subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 337

 Score = 32.5 bits (75), Expect = 0.098
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 6   GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSD 65
           G   LV GA G IGL + ++   +GA V +     E+LE  A+     D   +   + + 
Sbjct: 160 GDTVLVVGA-GPIGLGVIQVAKARGARVIVVDIDDERLE-FARELGADDTINVGDEDVAA 217

Query: 66  RVS 68
           R+ 
Sbjct: 218 RLR 220


>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           The medium chain reductase/dehydrogenases
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases  (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH) , quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones. ADH-like proteins
           typically form dimers (typically higher plants, mammals)
           or tetramers (yeast, bacteria), and generally have 2
           tightly bound zinc atoms per subunit, a catalytic zinc
           at the active site and a structural zinc in a lobe of
           the catalytic domain. The active site zinc is
           coordinated by a histidine, two cysteines, and a water
           molecule. The second zinc seems to play a structural
           role, affects subunit interactions, and is typically
           coordinated by 4 cysteines. Other MDR members have only
           a catalytic zinc, and some contain no coordinated zinc.
          Length = 271

 Score = 32.3 bits (74), Expect = 0.12
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 6   GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSD 65
           G   LV GA G +GL  A++    GA V +   S EKLE   +         L   +  D
Sbjct: 135 GDTVLVLGA-GGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE---------LGADHVID 184

Query: 66  RVSVEYLSKRVNEEMGGVDILVNNAG 91
               +   +      GG D++++  G
Sbjct: 185 YKEEDLEEELRLTGGGGADVVIDAVG 210


>gnl|CDD|176210 cd08248, RTN4I1, Human Reticulon 4 Interacting Protein 1.  Human
           Reticulon 4 Interacting Protein 1 is a member of the
           medium chain dehydrogenase/ reductase (MDR) family.
           Riticulons are endoplasmic reticulum associated proteins
           involved in membrane trafficking  and neuroendocrine
           secretion. The MDR/zinc-dependent alcohol
           dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.
          Length = 350

 Score = 32.2 bits (74), Expect = 0.13
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 5   TGKKALVTGASGSIGLAIAKILYKQGASV 33
            GK+ L+ G SG +G    ++L   GA V
Sbjct: 162 AGKRVLILGGSGGVGTFAIQLLKAWGAHV 190


>gnl|CDD|36412 KOG1198, KOG1198, KOG1198, Zinc-binding oxidoreductase [Energy
           production and conversion, General function prediction
           only].
          Length = 347

 Score = 31.9 bits (72), Expect = 0.17
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 9/87 (10%)

Query: 5   TGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFS 64
            GK  LV G SG +G A  ++    GA   +   S+EKLE V K     D  +       
Sbjct: 157 KGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEKLELVKKL--GADEVV------- 207

Query: 65  DRVSVEYLSKRVNEEMGGVDILVNNAG 91
           D      +         GVD++++  G
Sbjct: 208 DYKDENVVELIKKYTGKGVDVVLDCVG 234


>gnl|CDD|35292 KOG0069, KOG0069, KOG0069, Glyoxylate/hydroxypyruvate reductase
           (D-isomer-specific 2-hydroxy acid dehydrogenase
           superfamily) [Energy production and conversion].
          Length = 336

 Score = 31.5 bits (71), Expect = 0.20
 Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 11/99 (11%)

Query: 1   MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFP 60
            +DL GK   + G  G IG AIAK L   G  +  H  +Q   E+  + + +        
Sbjct: 157 GYDLEGKTVGILGL-GRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELL 215

Query: 61  ANFSDRVSV---------EYLSKRVNEEMGGVDILVNNA 90
           AN SD + V           ++K+  E+M    +LVN A
Sbjct: 216 AN-SDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTA 253


>gnl|CDD|176203 cd08241, QOR1, Quinone oxidoreductase (QOR).  QOR catalyzes the
           conversion of a quinone + NAD(P)H to a hydroquinone +
           NAD(P)+. Quinones are cyclic diones derived from
           aromatic compounds. Membrane bound QOR acts in the
           respiratory chains of bacteria and mitochondria, while
           soluble QOR acts to protect from toxic quinones (e.g.
           DT-diaphorase) or as a soluble eye-lens protein in some
           vertebrates (e.g. zeta-crystalin). QOR reduces quinones
           through a semi-quinone intermediate via a
           NAD(P)H-dependent single electron transfer. QOR is a
           member of the medium chain dehydrogenase/reductase
           family, but lacks the zinc-binding sites of the
           prototypical alcohol dehydrogenases of this group.
           NAD(P)(H)-dependent oxidoreductases are the major
           enzymes in the interconversion of alcohols and
           aldehydes, or ketones.  Alcohol dehydrogenase in the
           liver converts ethanol and NAD+ to acetaldehyde and
           NADH, while in yeast and some other microorganisms ADH
           catalyzes the conversion acetaldehyde to ethanol in
           alcoholic fermentation.  ADH is a member of the medium
           chain alcohol dehydrogenase family (MDR), which has a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form.  The NAD(H)-binding region is comprised
           of 2 structurally similar halves, each of which contacts
           a mononucleotide.  A GxGxxG motif after the first
           mononucleotide contact half allows the close contact of
           the coenzyme with the ADH backbone.  The N-terminal
           catalytic domain has a distant homology to GroES.  These
           proteins typically form dimers (typically higher plants,
           mammals) or tetramers (yeast, bacteria), and have 2
           tightly bound zinc atoms per subunit, a catalytic zinc
           at the active site, and a structural zinc in a lobe of
           the catalytic domain.  NAD(H)-binding occurs in the
           cleft between the catalytic and coenzyme-binding domains
           at the active site, and coenzyme binding induces a
           conformational closing of this cleft. Coenzyme binding
           typically precedes and contributes to substrate binding.
           In human ADH catalysis, the zinc ion helps coordinate
           the alcohol, followed by deprotonation of  a histidine,
           the ribose of NAD, a serine, then the alcohol, which
           allows the transfer of a hydride to NAD+, creating NADH
           and a zinc-bound aldehyde or ketone. In yeast and some
           bacteria, the active site zinc binds an aldehyde,
           polarizing it, and leading to the reverse reaction.
          Length = 323

 Score = 31.7 bits (73), Expect = 0.21
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 6/44 (13%)

Query: 6   GKKALVTGASGSIGLA---IAKILYKQGASVGLHGTSQEKLEKV 46
           G+  LV GA+G +GLA   +AK L   GA V    +S+EKL   
Sbjct: 140 GETVLVLGAAGGVGLAAVQLAKAL---GARVIAAASSEEKLALA 180


>gnl|CDD|30539 COG0190, FolD, 5,10-methylene-tetrahydrofolate
           dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase
           [Coenzyme metabolism].
          Length = 283

 Score = 31.7 bits (72), Expect = 0.22
 Identities = 16/49 (32%), Positives = 25/49 (51%)

Query: 3   DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFD 51
           DL GK  +V G S  +G  +A +L    A+V +  +  + L  + KN D
Sbjct: 153 DLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRTKDLASITKNAD 201


>gnl|CDD|176234 cd08273, MDR8, Medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           This group is a member of the medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, but lacks the zinc-binding
           sites of the zinc-dependent alcohol dehydrogenases. The
           medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the  NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.  ADH-like proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 331

 Score = 31.5 bits (72), Expect = 0.24
 Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 2/39 (5%)

Query: 4   LTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEK 42
           LTG++ L+ GASG +G A+ ++    GA V  +GT+ E+
Sbjct: 138 LTGQRVLIHGASGGVGQALLELALLAGAEV--YGTASER 174


>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
           glutamyl-tRNA reductase.  Glutamyl-tRNA reductase
           catalyzes the conversion of glutamyl-tRNA to
           glutamate-1-semialdehyde, initiating the synthesis of
           tetrapyrrole. Whereas tRNAs are generally associated
           with peptide bond formation in protein translation, here
           the tRNA activates glutamate in the initiation of
           tetrapyrrole biosynthesis in archaea, plants and many
           bacteria. In the first step, activated glutamate is
           reduced to glutamate-1-semi-aldehyde via the NADPH
           dependent glutamyl-tRNA reductase. Glutamyl-tRNA
           reductase forms a V-shaped dimer. Each monomer has 3
           domains: an N-terminal catalytic domain, a classic
           nucleotide binding domain, and a C-terminal dimerization
           domain. Although the representative structure 1GPJ lacks
           a bound NADPH, a theoretical binding pocket has been
           described. (PMID 11172694). Amino acid dehydrogenase
           (DH)-like NAD(P)-binding domains are members of the
           Rossmann fold superfamily and include glutamate,
           leucine, and phenylalanine DHs, methylene
           tetrahydrofolate DH, methylene-tetrahydromethanopterin
           DH, methylene-tetrahydropholate DH/cyclohydrolase,
           Shikimate DH-like proteins, malate oxidoreductases, and
           glutamyl tRNA reductase. Amino acid DHs catalyze the
           deamination of amino acids to keto acids with NAD(P)+ as
           a cofactor. The NAD(P)-binding Rossmann fold superfamily
           includes a wide variety of protein families including
           NAD(P)- binding domains of alcohol DHs,
           tyrosine-dependent oxidoreductases,
           glyceraldehyde-3-phosphate DH, lactate/malate DHs,
           formate/glycerate DHs, siroheme synthases,
           6-phosphogluconate DH, amino acid DHs, repressor rex,
           NAD-binding potassium channel  domain, CoA-binding, and
           ornithine cyclodeaminase-like domains. These domains
           have an alpha-beta-alpha configuration. NAD binding
           involves numerous hydrogen and van der Waals contacts.
          Length = 311

 Score = 31.1 bits (71), Expect = 0.31
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 1   MFDLTGKKALVTGASGSIGLAIAKILYKQGAS-VGLHGTSQEKLEKVAKNFD 51
             +L GKK LV GA G +G   AK L  +G + + +   + E+ E++AK   
Sbjct: 173 FGNLKGKKVLVIGA-GEMGELAAKHLAAKGVAEITIANRTYERAEELAKELG 223


>gnl|CDD|31286 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope
          biogenesis, outer membrane].
          Length = 345

 Score = 31.0 bits (70), Expect = 0.34
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 5  TGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQE 41
           GK AL+TG +G  G  +A++L ++G  V  HG  + 
Sbjct: 1  MGKVALITGITGQDGSYLAELLLEKGYEV--HGIKRR 35


>gnl|CDD|34587 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
          Length = 866

 Score = 30.8 bits (69), Expect = 0.35
 Identities = 26/81 (32%), Positives = 37/81 (45%), Gaps = 7/81 (8%)

Query: 6   GKKALVTGAS-GSIGLAIAKILYKQGASVGLHGT--SQEKLEKVAKNFDDVDR----FLL 58
            K ALVTGAS GSI  A+   L   GA+V    +  S+E+ E     +    R      +
Sbjct: 396 DKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLSEERTEFYRSLYARHARYGAALWV 455

Query: 59  FPANFSDRVSVEYLSKRVNEE 79
            PAN      V+ L + + +E
Sbjct: 456 VPANMGSYSDVDALIEWIGDE 476


>gnl|CDD|31834 COG1648, CysG, Siroheme synthase (precorrin-2
           oxidase/ferrochelatase domain) [Coenzyme metabolism].
          Length = 210

 Score = 30.7 bits (69), Expect = 0.41
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 19/112 (16%)

Query: 1   MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTS----------QEKLEKVAKNF 50
             DL GKK LV G  GS+ L  A++L K GA V +              + K++ + + F
Sbjct: 7   FLDLEGKKVLVVG-GGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREF 65

Query: 51  D---DVDRFLLFPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGIVRDSLFM 99
           D     D FL+  A        E L++R+ +      ILVN         F+
Sbjct: 66  DAEDLDDAFLVIAA-----TDDEELNERIAKAARERRILVNVVDDPELCDFI 112


>gnl|CDD|144908 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase.
          This family contains both shikimate and quinate
          dehydrogenases. Shikimate 5-dehydrogenase catalyses the
          conversion of shikimate to 5-dehydroshikimate. This
          reaction is part of the shikimate pathway which is
          involved in the biosynthesis of aromatic amino acids.
          Quinate 5-dehydrogenase catalyses the conversion of
          quinate to 5-dehydroquinate. This reaction is part of
          the quinate pathway where quinic acid is exploited as a
          source of carbon in prokaryotes and microbial
          eukaryotes. Both the shikimate and quinate pathways
          share two common pathway metabolites 3-dehydroquinate
          and dehydroshikimate.
          Length = 134

 Score = 30.4 bits (69), Expect = 0.52
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 3  DLTGKKALVTGASGSIGLAIAKILYKQGAS-VGLHGTSQEKLEKVAKNFDDV 53
          DL GKK L+ GA G +    AK L  +GA  + +   + EK +++A+ F   
Sbjct: 9  DLKGKKVLLIGA-GEMARLAAKHLLSKGAKKITIANRTLEKAKELAEEFGGE 59


>gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and
            related proteins [Lipid transport and metabolism].
          Length = 2376

 Score = 29.9 bits (67), Expect = 0.57
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 79   EMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLL---TRQLVPLMIRNRFGR 135
            ++G V  + N A ++RD L      +++ DV     +    L   +R++ P +       
Sbjct: 1845 KLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPEL-----DY 1899

Query: 136  VINITSVVGFTGNAGQVNYCAAKSGL 161
             +  +SV    GNAGQ NY  A S +
Sbjct: 1900 FVVFSSVSCGRGNAGQTNYGLANSAM 1925


>gnl|CDD|31287 COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase
           [General function prediction only].
          Length = 297

 Score = 29.8 bits (67), Expect = 0.68
 Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 25/163 (15%)

Query: 10  LVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVSV 69
           L+TG +G IG A+   L K G  V +      K                  A+ +   +V
Sbjct: 2   LITGGTGLIGRALTARLRKGGHQVTILTRRPPK------------------ASQNLHPNV 43

Query: 70  EYLSKRVNEEMGGVDILVNNAGIVRDSLFMRARYEDWDDVLSVNLTSAFLLTRQLVPLM- 128
                  +    G+D ++N AG   + +  R   E   + +     S    T +LV L+ 
Sbjct: 44  TLWEGLADALTLGIDAVINLAG---EPIAERRWTEKQKEEI---RQSRINTTEKLVELIA 97

Query: 129 IRNRFGRVINITSVVGFTGNAGQVNYCAAKSGLTGFTKALAQE 171
                 +V+   S VG+ G++G             F   L Q+
Sbjct: 98  ASETKPKVLISASAVGYYGHSGDRVVTEESPPGDDFLAQLCQD 140


>gnl|CDD|145831 pfam02882, THF_DHG_CYH_C, Tetrahydrofolate
          dehydrogenase/cyclohydrolase, NAD(P)-binding domain. 
          Length = 159

 Score = 29.7 bits (68), Expect = 0.72
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 3  DLTGKKALVTGASGSIGLAIAKILYKQGASV 33
          DL GK  +V G S  +G  +A +L    A+V
Sbjct: 33 DLAGKNVVVIGRSNIVGKPLALLLLNANATV 63


>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase.  L-threonine dehydrogenase
           (TDH) catalyzes the zinc-dependent formation of
           2-amino-3-ketobutyrate from L-threonine via NAD(H)-
           dependent oxidation.  THD is a member of the
           zinc-requiring, medium chain NAD(H)-dependent alcohol
           dehydrogenase family (MDR). MDRs  have a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form. NAD(P)(H)-dependent oxidoreductases are
           the major enzymes in the interconversion of alcohols and
           aldehydes, or ketones. The N-terminal region typically
           has an all-beta catalytic domain. These proteins
           typically form dimers (typically higher plants, mammals)
           or tetramers (yeast, bacteria) and have 2 tightly bound
           zinc atoms per subunit. Sorbitol and aldose reductase
           are NAD(+) binding proteins of the polyol pathway, which
           interconverts glucose and fructose.
          Length = 341

 Score = 29.5 bits (67), Expect = 0.78
 Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 3   DLTGKKALVTGASGSIGLAIAKILYKQGAS 32
           D++GK  L+TG  G IGL    +    GAS
Sbjct: 161 DVSGKSVLITGC-GPIGLMAIAVAKAAGAS 189


>gnl|CDD|176229 cd08268, MDR2, Medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           This group is a member of the medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, but lacks the zinc-binding
           sites of the zinc-dependent alcohol dehydrogenases. The
           medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the  NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.  ADH-like proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 328

 Score = 29.5 bits (67), Expect = 0.80
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 10  LVTGASGSIGLAIAKILYKQGASV 33
           L+T AS S+GLA  +I    GA+V
Sbjct: 149 LITAASSSVGLAAIQIANAAGATV 172


>gnl|CDD|38800 KOG3593, KOG3593, KOG3593, Predicted receptor-like serine/threonine
           kinase [Signal transduction mechanisms].
          Length = 355

 Score = 29.3 bits (65), Expect = 0.95
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 3/73 (4%)

Query: 21  AIAKILYKQGASVGLHGT--SQEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNE 78
            I  +     A+V  +G   + + LE V +   D    L       +   + Y ++R NE
Sbjct: 60  VIPAVNCGGDAAVDNYGIRFAADPLEGVGRA-SDYGMVLGIGCRAEEEDIILYQTERYNE 118

Query: 79  EMGGVDILVNNAG 91
           E  G D+ +   G
Sbjct: 119 ETFGYDVPIKEDG 131


>gnl|CDD|31252 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases
           [Energy production and conversion / Coenzyme metabolism
           / General function prediction only].
          Length = 324

 Score = 29.4 bits (66), Expect = 0.97
 Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 1   MFDLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVD 54
            FDL GK   + G  G IG A+A+ L   G  V  +  S     +       VD
Sbjct: 141 GFDLRGKTLGIIGL-GRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVD 193


>gnl|CDD|34904 COG5322, COG5322, Predicted dehydrogenase [General function
           prediction only].
          Length = 351

 Score = 29.2 bits (65), Expect = 1.0
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 3   DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEK 45
           DL+     + GA+G I  AIA+ L  +     L     E   +
Sbjct: 164 DLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNR 206


>gnl|CDD|133419 cd00650, LDH_MDH_like, NAD-dependent, lactate dehydrogenase-like,
           2-hydroxycarboxylate dehydrogenase family.  Members of
           this family include ubiquitous enzymes like L-lactate
           dehydrogenases (LDH), L-2-hydroxyisocaproate
           dehydrogenases, and some malate dehydrogenases (MDH).
           LDH catalyzes the last step of glycolysis in which
           pyruvate is converted to L-lactate. MDH is one of the
           key enzymes in the citric acid cycle, facilitating both
           the conversion of malate to oxaloacetate and
           replenishing levels of oxalacetate by reductive
           carboxylation of pyruvate. The LDH/MDH-like proteins are
           part of the NAD(P)-binding Rossmann fold superfamily,
           which includes a wide variety of protein families
           including the NAD(P)-binding domains of alcohol
           dehydrogenases, tyrosine-dependent oxidoreductases,
           glyceraldehyde-3-phosphate dehydrogenases,
           formate/glycerate dehydrogenases, siroheme synthases,
           6-phosphogluconate dehydrogenases, aminoacid
           dehydrogenases, repressor rex, and NAD-binding potassium
           channel domains, among others.
          Length = 263

 Score = 29.2 bits (66), Expect = 1.1
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 20/102 (19%)

Query: 11  VTGASGSIGLAIAKILYKQGASVG----LHGTSQEKLEKVAKNFDDVDRFLLFPANFS-- 64
           V GA G++G A+A  L      +     L+   +EKL+ VA    D+   +   A+    
Sbjct: 3   VIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVA---MDLQDAVEPLADIKVS 59

Query: 65  ---------DRVSVEYLSKRVN--EEMGGVDILVNNAGIVRD 95
                        V  ++  V     MG +D+L  N  IV++
Sbjct: 60  ITDDPYEAFKDADVVIITAGVGRKPGMGRLDLLKRNVPIVKE 101


>gnl|CDD|176228 cd08267, MDR1, Medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           This group is a member of the medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, but lacks the zinc-binding
           sites of the zinc-dependent alcohol dehydrogenases. The
           medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the  NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.  ADH-like proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 319

 Score = 29.1 bits (66), Expect = 1.2
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)

Query: 6   GKKALVTGASGSIGLA---IAKILYKQGASV 33
           G++ L+ GASG +G     IAK L   GA V
Sbjct: 144 GQRVLINGASGGVGTFAVQIAKAL---GAHV 171


>gnl|CDD|31264 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General
           function prediction only].
          Length = 339

 Score = 29.0 bits (65), Expect = 1.3
 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 6   GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAK 48
           GK   V GA G +G    +     GA V     S+EKLE   K
Sbjct: 167 GKWVAVVGAGG-LGHMAVQYAKAMGAEVIAITRSEEKLELAKK 208


>gnl|CDD|176231 cd08270, MDR4, Medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           This group is a member of the medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, but lacks the zinc-binding
           sites of the zinc-dependent alcohol dehydrogenases. The
           medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the  NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.  ADH-like proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 305

 Score = 28.9 bits (65), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 3   DLTGKKALVTGASGSIGLAIAKILYKQGASV 33
            L G++ LVTGASG +G    ++    GA V
Sbjct: 130 PLLGRRVLVTGASGGVGRFAVQLAALAGAHV 160


>gnl|CDD|176205 cd08243, quinone_oxidoreductase_like_1, Quinone oxidoreductase
           (QOR).  NAD(P)(H)-dependent oxidoreductases are the
           major enzymes in the interconversion of alcohols and
           aldehydes, or ketones.  The medium chain alcohol
           dehydrogenase family (MDR) have a NAD(P)(H)-binding
           domain in a Rossmann fold of a beta-alpha form. The
           N-terminal region typically has an all-beta catalytic
           domain. These proteins typically form dimers (typically
           higher plants, mammals) or tetramers (yeast, bacteria),
           and have 2 tightly bound zinc atoms per subunit.
          Length = 320

 Score = 28.7 bits (65), Expect = 1.4
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 19/97 (19%)

Query: 6   GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSD 65
           G   L+ G + S+GLA  K+    GA+V    T   +            R  L     +D
Sbjct: 143 GDTLLIRGGTSSVGLAALKLAKALGATV-TATTRSPE------------RAALLKELGAD 189

Query: 66  RVSVE--YLSKRVNEEMGGVDI---LVNNAGIVRDSL 97
            V ++   +++++    GG D    LV  A  ++DSL
Sbjct: 190 EVVIDDGAIAEQLRAAPGGFDKVLELVGTA-TLKDSL 225


>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of
          Shikimate dehydrogenase.  Shikimate dehydrogenase (DH)
          is an amino acid DH family member. Shikimate pathway
          links metabolism of carbohydrates to de novo
          biosynthesis of aromatic amino acids, quinones and
          folate. It is essential in plants, bacteria, and fungi
          but absent in mammals, thus making enzymes involved in
          this pathway ideal targets for broad spectrum
          antibiotics and herbicides. Shikimate DH catalyzes the
          reduction of 3-hydroshikimate to shikimate using the
          cofactor NADH. Amino acid DH-like NAD(P)-binding
          domains are members of the Rossmann fold superfamily
          and include glutamate, leucine, and phenylalanine DHs,
          methylene tetrahydrofolate DH,
          methylene-tetrahydromethanopterin DH,
          methylene-tetrahydropholate DH/cyclohydrolase,
          Shikimate DH-like proteins, malate oxidoreductases, and
          glutamyl tRNA reductase. Amino acid DHs catalyze the
          deamination of amino acids to keto acids with NAD(P)+
          as a cofactor. The NAD(P)-binding Rossmann fold
          superfamily includes a wide variety of protein families
          including NAD(P)- binding domains of alcohol DHs,
          tyrosine-dependent oxidoreductases,
          glyceraldehyde-3-phosphate DH, lactate/malate DHs,
          formate/glycerate DHs, siroheme synthases,
          6-phosphogluconate DHs, amino acid DHs, repressor rex,
          NAD-binding potassium channel  domain, CoA-binding, and
          ornithine cyclodeaminase-like domains. These domains
          have an alpha-beta-alpha configuration. NAD binding
          involves numerous hydrogen and van der Waals contacts.
          Length = 155

 Score = 28.4 bits (64), Expect = 1.9
 Identities = 22/89 (24%), Positives = 41/89 (46%), Gaps = 16/89 (17%)

Query: 1  MFDLTGKKALVTGASGSIGLAIAKILYKQGAS-VGLHGTSQEKLEKVAKNFDDVDRFLLF 59
            +L GKK L+ GA G+   A+A  L + GA+ + +   + EK + +A+ F +    L  
Sbjct: 14 GIELKGKKVLILGAGGA-ARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE----LGI 68

Query: 60 PANFSDRVSVEYLSKRVNEEMGGVDILVN 88
             + D          + E +   D+++N
Sbjct: 69 AIAYLD----------LEELLAEADLIIN 87


>gnl|CDD|30722 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
          Length = 414

 Score = 28.3 bits (63), Expect = 1.9
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 3   DLTGKKALVTGASGSIGLAIAKILYKQGAS-VGLHGTSQEKLEKVAKNFD 51
            L  KK LV GA G +G  +AK L ++G   + +   + E+ E++AK   
Sbjct: 175 SLKDKKVLVIGA-GEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG 223


>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase.  L-threonine
           dehydrogenase (TDH) catalyzes the zinc-dependent
           formation of 2-amino-3-ketobutyrate from L-threonine,
           via NAD(H)-dependent oxidation.  THD is a member of the
           zinc-requiring, medium chain NAD(H)-dependent alcohol
           dehydrogenase family (MDR). MDRs  have a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form. NAD(P)(H)-dependent oxidoreductases are
           the major enzymes in the interconversion of alcohols and
           aldehydes, or ketones. The N-terminal region typically
           has an all-beta catalytic domain. These proteins
           typically form dimers (typically higher plants, mammals)
           or tetramers (yeast, bacteria),  and have 2 tightly
           bound zinc atoms per subunit. Sorbitol and aldose
           reductase are NAD(+) binding proteins of the polyol
           pathway, which interconverts glucose and fructose.
          Length = 334

 Score = 28.3 bits (64), Expect = 2.3
 Identities = 19/40 (47%), Positives = 25/40 (62%), Gaps = 2/40 (5%)

Query: 6   GKKALVTGASGSIGLAIAKILYKQGAS-VGLHGTSQEKLE 44
           G   LV GA G IGL +A++L   GAS V +   ++EKLE
Sbjct: 160 GDSVLVFGA-GPIGLLLAQLLKLNGASRVTVAEPNEEKLE 198


>gnl|CDD|176235 cd08274, MDR9, Medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family. 
           This group is a member of the medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, but lacks the zinc-binding
           sites of the zinc-dependent alcohol dehydrogenases. The
           medium chain dehydrogenases/reductase
           (MDR)/zinc-dependent alcohol dehydrogenase-like family,
           which contains the zinc-dependent alcohol dehydrogenase
           (ADH-Zn) and related proteins, is a diverse group of
           proteins related to the first identified member, class I
           mammalian ADH.  MDRs display a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of a
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the  NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.  ADH-like proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 350

 Score = 28.0 bits (63), Expect = 2.5
 Identities = 13/29 (44%), Positives = 20/29 (68%)

Query: 5   TGKKALVTGASGSIGLAIAKILYKQGASV 33
            G+  LVTGASG +G A+ ++  ++GA V
Sbjct: 177 AGETVLVTGASGGVGSALVQLAKRRGAIV 205


>gnl|CDD|176179 cd05195, enoyl_red, enoyl reductase of polyketide synthase.
           Putative enoyl reductase of polyketide synthase.
           Polyketide synthases produce polyketides in step by step
           mechanism that is similar to fatty acid synthesis. Enoyl
           reductase reduces a double to single bond. Erythromycin
           is one example of a polyketide generated by 3 complex
           enzymes (megasynthases). 2-enoyl thioester reductase
           (ETR) catalyzes the NADPH-dependent dependent conversion
           of trans-2-enoyl acyl carrier protein/coenzyme A
           (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis.
           2-enoyl thioester reductase activity has been linked in 
           Candida tropicalis as essential in maintaining
           mitiochondrial respiratory function. This ETR family is
           a part of the medium chain dehydrogenase/reductase
           family, but lack the zinc coordination sites
           characteristic of the alcohol dehydrogenases in this
           family. NAD(P)(H)-dependent oxidoreductases are the
           major enzymes in the interconversion of alcohols and
           aldehydes or ketones. Alcohol dehydrogenase in the liver
           converts ethanol and NAD+ to acetaldehyde and NADH,
           while in yeast and some other microorganisms ADH
           catalyzes the conversion acetaldehyde to ethanol in
           alcoholic fermentation.   ADH is a member of the medium
           chain alcohol dehydrogenase family (MDR), which has a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form.  The NAD(H)-binding region is comprised
           of 2 structurally similar halves, each of which contacts
           a mononucleotide. The N-terminal catalytic domain has a
           distant homology  to GroES. These proteins typically
           form dimers (typically higher plants, mammals) or
           tetramers (yeast, bacteria), and have 2 tightly bound
           zinc atoms per subunit, a catalytic zinc at the active
           site, and a structural zinc in a lobe of the catalytic
           domain. NAD(H) binding occurs in the cleft between the
           catalytic  and coenzyme-binding domains, at the active
           site, and coenzyme binding induces a conformational
           closing of this cleft. Coenzyme binding typically
           precedes and contributes to substrate binding.
          Length = 293

 Score = 27.9 bits (63), Expect = 2.5
 Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 20/90 (22%)

Query: 6   GKKALVTGASGSIGLA---IAKILYKQGASVGLHGT--SQEKLEKVAKNFDDVDRFLLFP 60
           G+  L+  A+G +G A   +A+ L   GA V    T  S+EK E + +    VD      
Sbjct: 109 GESVLIHAAAGGVGQAAIQLAQHL---GAEV--FATVGSEEKREFLRELGGPVDHI---- 159

Query: 61  ANFSDRVSVEYLSKRVNEEMG--GVDILVN 88
             FS R      +  +    G  GVD+++N
Sbjct: 160 --FSSRDL--SFADGILRATGGRGVDVVLN 185


>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase.  L-idonate
           5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion
           of L-lodonate to 5-ketogluconate in the metabolism of
           L-Idonate to  6-P-gluconate. In E. coli, this GntII
           pathway is a subsidiary pathway to the canonical GntI
           system, which also phosphorylates and transports
           gluconate.  L-ido 5-DH is found in an operon with a
           regulator indR, transporter idnT, 5-keto-D-gluconate
           5-reductase, and Gnt kinase. L-ido 5-DH is a
           zinc-dependent alcohol dehydrogenase-like protein. The
           alcohol dehydrogenase ADH-like family of proteins is a
           diverse group of proteins related to the first
           identified member, class I mammalian ADH.  This group is
           also called the medium chain dehydrogenases/reductase
           family (MDR) which displays a broad range of activities
           and are distinguished from the smaller short chain
           dehydrogenases(~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of a
           beta-alpha form and an N-terminal GroES-like catalytic
           domain.  The MDR group contains a host of activities,
           including the founding alcohol dehydrogenase (ADH),
           quinone reductase, sorbitol dehydrogenase, formaldehyde
           dehydrogenase, butanediol DH, ketose reductase, cinnamyl
           reductase, and numerous others. The zinc-dependent
           alcohol dehydrogenases (ADHs) catalyze the
           NAD(P)(H)-dependent interconversion of alcohols to
           aldehydes or ketones. ADH-like proteins typically form
           dimers (typically higher plants, mammals) or tetramers
           (yeast, bacteria), and generally have 2 tightly bound
           zinc atoms per subunit. The active site zinc is
           coordinated by a histidine, two cysteines, and a water
           molecule. The second zinc seems to play a structural
           role, affects subunit interactions, and is typically
           coordinated by 4 cysteines.
          Length = 339

 Score = 28.0 bits (63), Expect = 2.8
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 3   DLTGKKALVTGASGSIGLAIAKILYKQGAS 32
           DL GK+ LVTGA G IG  +     + GA+
Sbjct: 163 DLAGKRVLVTGA-GPIGALVVAAARRAGAA 191


>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase. 
           (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent
           medium chain alcohol dehydrogenase, catalyzes the
           NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and
           meso-butanediol to acetoin. BDH functions as a
           homodimer.  NAD(P)(H)-dependent oxidoreductases are the
           major enzymes in the interconversion of alcohols and
           aldehydes, or ketones.  The medium chain alcohol
           dehydrogenase family (MDR) have a NAD(P)(H)-binding
           domain in a Rossmann fold of a beta-alpha form. The
           N-terminal region typically has an all-beta catalytic
           domain. These proteins typically form dimers (typically
           higher plants, mammals) or tetramers (yeast, bacteria),
           and have 2 tightly bound zinc atoms per subunit.
           Sorbitol and aldose reductase are NAD(+) binding
           proteins of the polyol pathway, which interconverts
           glucose and fructose. Sorbitol dehydrogenase is
           tetrameric and has a single catalytic zinc per subunit.
          Length = 351

 Score = 27.9 bits (63), Expect = 2.9
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 6   GKKALVTGASGSIGLAIAKILYKQGAS 32
           G  ALV GA G IGL     L   GAS
Sbjct: 173 GDTALVLGA-GPIGLLTILALKAAGAS 198


>gnl|CDD|111992 pfam03155, Alg6_Alg8, ALG6, ALG8 glycosyltransferase family.
           N-linked (asparagine-linked) glycosylation of proteins
           is mediated by a highly conserved pathway in eukaryotes,
           in which a lipid (dolichol phosphate)-linked
           oligosaccharide is assembled at the endoplasmic
           reticulum membrane prior to the transfer of the
           oligosaccharide moiety to the target asparagine
           residues. This oligosaccharide is composed of
           Glc(3)Man(9)GlcNAc(2). The addition of the three glucose
           residues is the final series of steps in the synthesis
           of the oligosaccharide precursor. Alg6 transfers the
           first glucose residue, and Alg8 transfers the second
           one. In the human alg6 gene, a C->T transition, which
           causes Ala333 to be replaced with Val, has been
           identified as the cause of a congenital disorder of
           glycosylation, designated as type Ic OMIM:603147.
          Length = 463

 Score = 27.7 bits (62), Expect = 3.0
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 117 AFLLTRQLVPLMIRNRFGRVINITSVVGFT 146
            +LL R L     RN F R++ +  VV  T
Sbjct: 198 VYLLRRCLNKKNFRNSFARILKLALVVVGT 227


>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family.  This
           group shares the zinc coordination sites of the
           zinc-dependent alcohol dehydrogenases. The medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR). The MDR proteins have 2 domains: a
           C-terminal NAD(P)-binding Rossmann fold domain of an
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.  The MDR group contains a
           host of activities, including the founding alcohol
           dehydrogenase (ADH), quinone reductase, sorbitol
           dehydrogenase, formaldehyde dehydrogenase, butanediol
           DH, ketose reductase, cinnamyl reductase, and numerous
           others. The zinc-dependent alcohol dehydrogenases (ADHs)
           catalyze the  NAD(P)(H)-dependent interconversion of
           alcohols to aldehydes or ketones.  Active site zinc has
           a catalytic role, while structural zinc aids in
           stability.  ADH-like proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and generally have 2 tightly bound zinc atoms
           per subunit. The active site zinc is coordinated by a
           histidine, two cysteines, and a water molecule. The
           second zinc seems to play a structural role, affects
           subunit interactions, and is typically coordinated by 4
           cysteines.
          Length = 306

 Score = 27.7 bits (62), Expect = 3.4
 Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 18/94 (19%)

Query: 6   GKKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLE-KVAKN--FDDVDRFLLFPAN 62
           G   +V G  G IGL  A++   QGA+V + GT ++++   VAK    D V+        
Sbjct: 165 GDTVVVFG-PGPIGLLAAQVAKLQGATVVVVGTEKDEVRLDVAKELGADAVN-------- 215

Query: 63  FSDRVSVEYLSKRVNEEMG--GVDILVNNAGIVR 94
                  E L++ VNE     G D+++  +G V 
Sbjct: 216 ----GGEEDLAELVNEITDGDGADVVIECSGAVP 245


>gnl|CDD|146532 pfam03949, Malic_M, Malic enzyme, NAD binding domain. 
          Length = 255

 Score = 27.5 bits (62), Expect = 3.7
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 12/57 (21%)

Query: 4  LTGK-----KALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDR 55
          +TGK     K +  GA G+ G+ IA++L       GL        E+  KN   VDR
Sbjct: 18 ITGKPLSDQKIVFFGA-GAAGIGIAELLVAAMVREGL------SEEEARKNIWMVDR 67


>gnl|CDD|176209 cd08247, AST1_like, AST1 is a cytoplasmic protein associated with
           the periplasmic membrane in yeast.  This group contains
           members identified in targeting of yeast membrane
           proteins ATPase. AST1 is a cytoplasmic protein
           associated with the periplasmic membrane in yeast,
           identified as a multicopy suppressor of pma1 mutants
           which cause temperature sensitive growth arrest due to
           the inability of ATPase to target to the cell surface.
           This family is homologous to the medium chain family of
           dehydrogenases and reductases. Medium chain
           dehydrogenases/reductase (MDR)/zinc-dependent alcohol
           dehydrogenase-like family, which contains the
           zinc-dependent alcohol dehydrogenase (ADH-Zn) and
           related proteins, is a diverse group of proteins related
           to the first identified member, class I mammalian ADH.
           MDRs display a broad range of activities and are
           distinguished from the smaller short chain
           dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
           acids of the MDR).  The MDR proteins have 2 domains: a
           C-terminal NAD(P) binding-Rossmann fold domain of an
           beta-alpha form and an N-terminal catalytic domain with
           distant homology to GroES.
          Length = 352

 Score = 27.2 bits (61), Expect = 3.8
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 6/52 (11%)

Query: 6   GKKALVTGASGSIGLA---IAKILYKQGASVGL-HGTSQEKLEKVAKNFDDV 53
             K LV G S S+G     +AK  Y  G  VG     S E  +K+    D  
Sbjct: 152 DSKVLVLGGSTSVGRFAIQLAKNHYNIGTVVGTCSSRSAELNKKL--GADHF 201


>gnl|CDD|36417 KOG1203, KOG1203, KOG1203, Predicted dehydrogenase [Carbohydrate
           transport and metabolism].
          Length = 411

 Score = 27.3 bits (60), Expect = 3.9
 Identities = 17/47 (36%), Positives = 23/47 (48%)

Query: 7   KKALVTGASGSIGLAIAKILYKQGASVGLHGTSQEKLEKVAKNFDDV 53
              LV GA+G +G  I KIL K+G SV      ++K E +   F   
Sbjct: 80  TTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLGVFFVD 126


>gnl|CDD|145720 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein. 
          This is a family of diverse bacterial polysaccharide
          biosynthesis proteins including the CapD protein, WalL
          protein mannosyl-transferase and several putative
          epimerases (e.g. WbiI).
          Length = 280

 Score = 27.1 bits (61), Expect = 5.2
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 10 LVTGASGSIGLAIAKILYKQGAS 32
          LVTG  GSIG  + + + K    
Sbjct: 2  LVTGGGGSIGSELCRQILKFNPK 24


>gnl|CDD|133448 cd01080, NAD_bind_m-THF_DH_Cyclohyd, NADP binding domain of
          methylene-tetrahydrofolate
          dehydrogenase/cyclohydrolase.  NADP binding domain of
          the Methylene-Tetrahydrofolate
          Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase)
          bifunctional enzyme.   Tetrahydrofolate is a versatile
          carrier of activated one-carbon units. The major
          one-carbon folate donors are N-5
          methyltetrahydrofolate, N5,N10-m-THF, and
          N10-formayltetrahydrofolate. The oxidation of metabolic
          intermediate m-THF to m-THF requires the enzyme m-THF
          DH. In addition, most DHs also have an associated
          cyclohydrolase activity which catalyzes its hydrolysis
          to N10-formyltetrahydrofolate. m-THF DH is typically
          found as part of a multifunctional protein in
          eukaryotes. NADP-dependent m-THF DH in mammals, birds
          and yeast are components of a trifunctional enzyme with
          DH, cyclohydrolase, and synthetase activities. Certain
          eukaryotic cells also contain homodimeric bifunctional
          DH/cyclodrolase form. In bacteria, monofucntional DH,
          as well as bifunctional m-THF m-THF DHm-THF
          DHDH/cyclodrolase are found. In addition, yeast (S.
          cerevisiae) also express an monofunctional DH. This
          family contains the bifunctional DH/cyclohydrolase.
          M-THF DH, like other amino acid DH-like NAD(P)-binding
          domains, is a member of the Rossmann fold superfamily
          which includes glutamate, leucine, and phenylalanine
          DHs, m-THF DH, methylene-tetrahydromethanopterin DH,
          m-THF DH/cyclohydrolase, Shikimate DH-like proteins,
          malate oxidoreductases, and glutamyl tRNA reductase.
          Amino acid DHs catalyze the deamination of amino acids
          to keto acids with NAD(P)+ as a cofactor. The
          NAD(P)-binding Rossmann fold superfamily includes a
          wide variety of protein families including NAD(P)-
          binding domains of alcohol DHs, tyrosine-dependent
          oxidoreductases, glyceraldehyde-3-phosphate DH,
          lactate/malate DHs, formate/glycerate DHs, siroheme
          synthases, 6-phosphogluconate DH, amino acid DHs,
          repressor rex, NAD-binding potassium channel  domain,
          CoA-binding, and ornithine cyclodeaminase-like domains.
          Length = 168

 Score = 26.7 bits (60), Expect = 5.5
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 2  FDLTGKKALVTGASGSIGLAIAKILYKQGASV 33
           DL GKK +V G S  +G  +A +L  + A+V
Sbjct: 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATV 71


>gnl|CDD|30801 COG0452, Dfp, Phosphopantothenoylcysteine synthetase/decarboxylase
           [Coenzyme metabolism].
          Length = 392

 Score = 26.9 bits (59), Expect = 5.9
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 29/106 (27%)

Query: 3   DLTGKKALVTG----------------ASGSIGLAIAKILYKQGASVGLHGTSQEKLEKV 46
           DL GKK L+T                 +SG +G A+A    ++GASV L  +    L+  
Sbjct: 180 DLKGKKVLITAGPTREYIDPVRFISNRSSGKMGFALAAAAKRRGASVTLV-SGPTSLKIP 238

Query: 47  AKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEMGGVDILVNNAGI 92
           A                    S E +   V E     DI ++ A +
Sbjct: 239 AG------------VEVVKVESAEEMLNAVLEAALPADIFISAAAV 272


>gnl|CDD|31263 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent
           dehydrogenases [Amino acid transport and metabolism /
           General function prediction only].
          Length = 350

 Score = 26.5 bits (58), Expect = 6.0
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 6   GKKALVTGASGSIGLAIAKILYKQGAS-VGLHGTSQEKLEKVAKNF 50
           G   +V GA G IGL    +    GAS V +   S E+LE   +  
Sbjct: 169 GGTVVVVGA-GPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG 213


>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent
           quinone reductase activity (QOR).  Zeta-crystallin is a
           eye lens protein with NADP-dependent quinone reductase
           activity (QOR). It has been cited as a structural
           component in mammalian eyes, but also has homology to
           quinone reductases in unrelated species. QOR catalyzes
           the conversion of a quinone and NAD(P)H to a
           hydroquinone and NAD(P+. Quinones are cyclic diones
           derived from aromatic compounds. Membrane bound QOR acts
           in the respiratory chains of bacteria and mitochondria,
           while soluble QOR acts to protect from toxic quinones
           (e.g. DT-diaphorase) or as a soluble eye-lens protein in
           some vertebrates (e.g. zeta-crystalin). QOR reduces
           quinones through a semi-quinone intermediate via a
           NAD(P)H-dependent single electron transfer. QOR is a
           member of the medium chain dehydrogenase/reductase
           family, but lacks the zinc-binding sites of the
           prototypical alcohol dehydrogenases of this group.
           Alcohol dehydrogenase in the liver converts ethanol and
           NAD+ to acetaldehyde and NADH, while in yeast and some
           other microorganisms ADH catalyzes the conversion
           acetaldehyde to ethanol in alcoholic fermentation.  ADH
           is a member of the medium chain alcohol dehydrogenase
           family (MDR), which has a NAD(P)(H)-binding domain in a
           Rossmann fold of a beta-alpha form.  The NAD(H)-binding
           region is comprised of 2 structurally similar halves,
           each of which contacts a mononucleotide.  The N-terminal
           catalytic domain has a distant homology to GroES. These
           proteins typically form dimers (typically higher plants,
           mammals) or tetramers (yeast, bacteria), and have 2
           tightly bound zinc atoms per subunit, a catalytic zinc
           at the active site, and a structural zinc in a lobe of
           the catalytic domain.  NAD(H)-binding occurs in the
           cleft between the catalytic and coenzyme-binding domains
           at the active site, and coenzyme binding induces a
           conformational closing of this cleft. Coenzyme binding
           typically precedes and contributes to substrate binding.
           In human ADH catalysis, the zinc ion helps coordinate
           the alcohol, followed by deprotonation of  a histidine,
           the ribose of NAD, a serine, then the alcohol, which
           allows the transfer of a hydride to NAD+, creating NADH
           and a zinc-bound aldehyde or ketone. In yeast and some
           bacteria, the active site zinc binds an aldehyde,
           polarizing it, and leading to the reverse reaction.
          Length = 325

 Score = 26.8 bits (60), Expect = 6.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 4   LTGKKALVTGASGSIGLAIAKILYKQGASV 33
             G+  LV G SG++G A  ++    GA V
Sbjct: 143 KAGETVLVHGGSGAVGHAAVQLARWAGARV 172


>gnl|CDD|176183 cd05280, MDR_yhdh_yhfp, Yhdh and yhfp-like putative quinone
           oxidoreductases.  Yhdh and yhfp-like putative quinone
           oxidoreductases (QOR). QOR catalyzes the conversion of a
           quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones
           are cyclic diones derived from aromatic compounds.
           Membrane bound QOR actin the respiratory chains of
           bacteria and mitochondria, while soluble QOR acts to
           protect from toxic quinones (e.g. DT-diaphorase) or as a
           soluble eye-lens protein in some vertebrates (e.g.
           zeta-crystalin). QOR reduces quinones through a
           semi-quinone intermediate via a NAD(P)H-dependent single
           electron transfer. QOR is a member of the medium chain
           dehydrogenase/reductase family, but lacks the
           zinc-binding sites of the prototypical alcohol
           dehydrogenases of this group.  NAD(P)(H)-dependent
           oxidoreductases are the major enzymes in the
           interconversion of alcohols and aldehydes, or ketones.
           Alcohol dehydrogenase in the liver converts ethanol and
           NAD+ to acetaldehyde and NADH, while in yeast and some
           other microorganisms ADH catalyzes the conversion
           acetaldehyde to ethanol in alcoholic fermentation.  ADH
           is a member of the medium chain alcohol dehydrogenase
           family (MDR), which has a NAD(P)(H)-binding domain in a
           Rossmann fold of a beta-alpha form.  The NAD(H)-binding
           region is comprised of 2 structurally similar halves,
           each of which contacts a mononucleotide.  A GxGxxG motif
           after the first mononucleotide contact half allows the
           close contact of the coenzyme with the ADH backbone.
           The N-terminal catalytic domain has a distant homology
           to GroES. These proteins typically form dimers
           (typically higher plants, mammals) or tetramers (yeast,
           bacteria), and have 2 tightly bound zinc atoms per
           subunit, a catalytic zinc at the active site and a
           structural zinc in a lobe of the catalytic domain.
           NAD(H) binding occurs in the cleft between the catalytic
           and coenzyme-binding domains at the active site, and
           coenzyme binding induces a conformational closing of
           this cleft. Coenzyme binding typically precedes and
           contributes to substrate binding. In human ADH
           catalysis, the zinc ion helps coordinate the alcohol,
           followed by deprotonation of  a histidine, the ribose of
           NAD, a serine, then the alcohol, which allows the
           transfer of a hydride to NAD+, creating NADH and a
           zinc-bound aldehyde or ketone. In yeast and some
           bacteria, the active site zinc binds an aldehyde,
           polarizing it, and leading to the reverse reaction.
          Length = 325

 Score = 26.7 bits (60), Expect = 6.3
 Identities = 14/25 (56%), Positives = 19/25 (76%), Gaps = 2/25 (8%)

Query: 10  LVTGASGSIG-LAIAKILYKQGASV 33
           LVTGA+G +G +A+A IL K G +V
Sbjct: 151 LVTGATGGVGSIAVA-ILAKLGYTV 174


>gnl|CDD|30630 COG0282, ackA, Acetate kinase [Energy production and conversion].
          Length = 396

 Score = 26.7 bits (59), Expect = 6.9
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 3/82 (3%)

Query: 21  AIAKILYKQGASVGLHGTSQEKLEKVAKNFDDVDRFLLFPANFSDRVSVEYLSKRVNEEM 80
            I  +L K+   +GL G S + +  + +   + +   L    F  R+  +Y+       +
Sbjct: 261 EIDTLLNKKSGLLGLSGLSSD-MRDLEEAAAEGNEAKLALDMFVYRI-AKYIGSYAAA-L 317

Query: 81  GGVDILVNNAGIVRDSLFMRAR 102
           GG+D LV  AGI  +S  +R  
Sbjct: 318 GGLDALVFTAGIGENSALVREL 339


>gnl|CDD|145796 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid
          dehydrogenase, NAD binding domain.  This domain is
          inserted into the catalytic domain, the large
          dehydrogenase and D-lactate dehydrogenase families in
          SCOP. N-terminal portion of which is represented by
          family pfam00389.
          Length = 176

 Score = 26.7 bits (60), Expect = 7.0
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 3  DLTGKKALVTGASGSIGLAIAKILYKQGASVGLHGTS-QEKLEKVAKNFDDVDRFL 57
          +L+GK   + G  G IG A+A+ L   G  V  +    + + E +   +  +D  L
Sbjct: 33 ELSGKTVGIIGL-GRIGRAVARRLKAFGMKVIAYDRYPKAEAEALGARYVSLDELL 87


>gnl|CDD|48470 cd03482, MutL_Trans_MutL, MutL_Trans_MutL: transducer domain,
           having a ribosomal S5 domain 2-like fold, found in
           proteins similar to Escherichia coli MutL.  EcMutL
           belongs to the DNA mismatch repair (MutL/MLH1/PMS2)
           family.  This transducer domain is homologous to the
           second domain of the DNA gyrase B subunit, which is
           known to be important in nucleotide hydrolysis and the
           transduction of structural signals from the ATP-binding
           site to the DNA breakage/reunion regions of the enzymes.
            It has been suggested that during initiation of DNA
           mismatch repair in E. coli, the mismatch recognition
           protein MutS recruits MutL in the presence of ATP.  The
           MutS(ATP)-MutL ternary complex formed, then recruits the
           latent endonuclease MutH. Prokaryotic MutS and MutL are
           homodimers..
          Length = 123

 Score = 26.3 bits (58), Expect = 8.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 89  NAGIVRDSLFMRARYEDWDDVLSVNLTSAFLL 120
           N  +VRD L   A  + + DVL      A++L
Sbjct: 51  NGRMVRDKLISHAVRQAYSDVLHGGRHPAYVL 82


>gnl|CDD|35096 COG5537, IRR1, Cohesin [Cell division and chromosome partitioning].
          Length = 740

 Score = 26.1 bits (57), Expect = 8.4
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 12/75 (16%)

Query: 67  VSVEYLSKRVNEEMGGVDILVNNAGIVRD-------SLFMRARYEDWDDVLSVNLTSAFL 119
            S+     R+NE      +   N  ++RD       S+F+ +RY D DDV+ V  + +  
Sbjct: 246 FSLSEKKSRMNELA----LYDLNPSLIRDEIKDICDSVFV-SRYIDVDDVIRVLCSMSLR 300

Query: 120 LTRQLVPLMIRNRFG 134
               LVP   R   G
Sbjct: 301 DWIGLVPDYFRKILG 315


>gnl|CDD|146655 pfam04127, DFP, DNA / pantothenate metabolism flavoprotein.  The
          DNA/pantothenate metabolism flavoprotein (EC:4.1.1.36)
          affects synthesis of DNA, and pantothenate metabolism.
          Length = 197

 Score = 26.1 bits (58), Expect = 8.7
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 14 ASGSIGLAIAKILYKQGASV 33
          +SG +G AIA+   K+GA V
Sbjct: 26 SSGKMGAAIAEEFLKRGADV 45


>gnl|CDD|176180 cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone
           oxidoreductase.  PIG3 p53-inducible quinone
           oxidoreductase, a medium chain dehydrogenase/reductase
           family member, acts in the apoptotic pathway. PIG3
           reduces ortho-quinones, but its apoptotic activity has
           been attributed to oxidative stress generation, since
           overexpression of PIG3 accumulates reactive oxygen
           species. PIG3 resembles the MDR family member quinone
           reductases, which catalyze the reduction of quinone to
           hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are
           the major enzymes in the interconversion of alcohols and
           aldehydes or ketones.  Alcohol dehydrogenase in the
           liver converts ethanol and NAD+ to acetaldehyde and
           NADH, while in yeast and some other microorganisms ADH
           catalyzes the conversion acetaldehyde to ethanol in
           alcoholic fermentation.  ADH is a member of the medium
           chain alcohol dehydrogenase family (MDR), which has a
           NAD(P)(H)-binding domain in a Rossmann fold of a
           beta-alpha form.  The NAD(H)-binding region is comprised
           of 2 structurally similar halves, each of which contacts
           a mononucleotide.  A GxGxxG motif after the first
           mononucleotide contact half allows the close contact of
           the coenzyme with the ADH backbone.  The N-terminal
           catalytic domain has a distant homology  to GroES.
           These proteins typically form dimers (typically higher
           plants, mammals) or tetramers (yeast, bacteria), and
           have 2 tightly bound zinc atoms per subunit, a catalytic
           zinc at the active site, and a structural zinc in a lobe
           of the catalytic domain.  NAD(H) binding occurs in the
           cleft between the catalytic and coenzyme-binding domains
           at the active site, and coenzyme binding induces a
           conformational closing of this cleft. Coenzyme binding
           typically precedes and contributes to substrate binding.
           In human ADH catalysis, the zinc ion helps coordinate
           the alcohol, followed by deprotonation of  a histidine,
           the ribose of NAD, a serine, then the alcohol, which
           allows the transfer of a hydride to NAD+, creating NADH
           and a zinc-bound aldehyde or ketone. In yeast and some
           bacteria, the active site zinc binds an aldehyde,
           polarizing it, and leading to the reverse reaction.
          Length = 323

 Score = 26.3 bits (59), Expect = 9.1
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 10/46 (21%)

Query: 6   GKKALVTGASGSIGLA---IAKILYKQGASVGLHGT--SQEKLEKV 46
           G+  L+ G +  +G A   +AK L   GA V    T  S+EKLE  
Sbjct: 140 GETVLIHGGASGVGTAAIQLAKAL---GARV--IATAGSEEKLEAC 180


>gnl|CDD|177015 CHL00076, chlB, photochlorophyllide reductase subunit B.
          Length = 513

 Score = 26.1 bits (58), Expect = 9.5
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 4   LTGKKALVTGASGSIGLAIAKILYKQ-GASVGLHGT 38
           LTGKKA+V G + +   ++ KIL ++ G  V   GT
Sbjct: 303 LTGKKAVVFGDA-THAASMTKILAREMGIRVSCAGT 337


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.320    0.135    0.379 

Gapped
Lambda     K      H
   0.267   0.0752    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 2,765,722
Number of extensions: 142349
Number of successful extensions: 525
Number of sequences better than 10.0: 1
Number of HSP's gapped: 479
Number of HSP's successfully gapped: 96
Length of query: 247
Length of database: 6,263,737
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,297,318
Effective search space: 670381608
Effective search space used: 670381608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.3 bits)