HHSEARCH alignment of GI: 254780536 and SCOP domain: d1nm2a1

Alignment
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of malonyl-CoA ACP transacylase FabD {Streptomyces coelicolor A3(2) [TaxId: 100226]}
Probab=100.00  E-value=0  Score=421.41  Aligned_cols=238  Identities=31%  Similarity=0.425  Sum_probs=222.2

Q ss_pred             EEEECCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHCCCCHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHC---
Q ss_conf             99980873337311589999859999999999998839897898538986783046765034566665478999971---
Q gi|254780536|r    3 TVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPALTAVSMAFIRVMEKN---   79 (314)
Q Consensus         3 ~~f~FpGQGsq~~gM~~~L~~~~p~~r~~~~~~~~~l~~~l~~~~~~~~~~~l~~~~~~Qp~i~~~~~a~~~~l~~~---   79 (314)
                      +||+||||||||+|||++||+ +|.+++.++++++++|+++.++++.++.+.++++.++||++++++++++++|+++   
T Consensus         3 iafvFpGQGsQ~~gM~~~l~~-~~~~~~~~~~~~~~lg~~l~~~~~~~~~~~l~~t~~~Qp~~~~~~~a~~~~l~~~~~~   81 (253)
T d1nm2a1           3 LVLVAPGQGAQTPGFLTDWLA-LPGAADRVAAWSDAIGLDLAHFGTKADADEIRDTSVAQPLLVAAGILSAAALGTQTSV   81 (253)
T ss_dssp             EEEEECCTTCCCTTTTHHHHT-STTHHHHHHHHHHHHTSCHHHHHHTCCHHHHTCHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             EEEEECCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCH
T ss_conf             999989557758888999986-9899999999998859799999507876554322211168999999999999982002


Q ss_pred             ------CCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             ------88764354424665442012225317865023333345688653100111122222123503553112234421
Q gi|254780536|r   80 ------GLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSMQEAVPPGLGSMVAIIGLDDCVVDSICAQAS  153 (314)
Q Consensus        80 ------gi~~~~~p~~v~GhSlGE~aAl~~aG~ls~eda~~lv~~R~~~m~~~~~~~~g~M~aV~~~~~~~~~~~~~~~~  153 (314)
                            |+    +|++++|||+|||+|+++||+++++|+++++..|+..|.....                         
T Consensus        82 ~~~~~~Gv----~P~~v~GHSlGE~aAl~~aG~l~~~d~~~lv~~r~~~~~~~~~-------------------------  132 (253)
T d1nm2a1          82 ADATGPGF----TPGAVAGHSVGEITAAVFAGVLDDTAALSLVRRRGLAMAEAAA-------------------------  132 (253)
T ss_dssp             ------CC----CCSEEEESTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHH-------------------------
T ss_pred             HHHCCCCC----CCCEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCC-------------------------
T ss_conf             22015631----6554333788889999997588767522034566653103233-------------------------


Q ss_pred             CCCCCEECCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             13542001223222135303311289998888886531003555543234201020378888742223202877654204
Q gi|254780536|r  154 RVGICEIANDNGGGQVVISGLQDAVKCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPN  233 (314)
Q Consensus       154 ~~~~~~ia~~Ns~~q~visG~~~~l~~~~~~~~~~~~~~~~~L~v~~afHs~lm~~~~~~~~~~l~~i~~~~p~ipi~S~  233 (314)
                                                                ..+++|||||+|+|+.++|++.+++++|++|++|+|||
T Consensus       133 ------------------------------------------~~~sgafHs~~m~~~~~~~~~~l~~~~~~~p~~p~~S~  170 (253)
T d1nm2a1         133 ------------------------------------------VTVAGAFHTRHMAPAVDKLAEAAKALTPADPKVTYVSN  170 (253)
T ss_dssp             ------------------------------------------TSCSSCTTSGGGHHHHHHHHHHHTTCCCCCCSSEEBCT
T ss_pred             ------------------------------------------CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf             ------------------------------------------56788988866760399999999750301232224465


Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHH
Q ss_conf             5787100100233222220448501999999999779989999389879999999873898155239989999999874
Q gi|254780536|r  234 FCASPVSSIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSISKVEDIDLALRSI  312 (314)
Q Consensus       234 ~~g~~~~~~~~~~~~l~~ql~~pV~f~~~i~~l~~~g~~~fiEiGP~~~Lt~l~~~~~~~~~~~~~~~~~~~~~~l~~~  312 (314)
                      ++|++++++++++++|++|+++||+|.++|+++.+.|+++|||+|||++|++++|+++++.++.++++.+|++.+.+.+
T Consensus       171 ~~g~~~~~~~~~~~~l~~ql~~pV~f~~~i~~l~~~gv~~fvEiGP~~~Ls~l~k~~~~~~~~~sv~~~~~l~~~~~~~  249 (253)
T d1nm2a1         171 KDGRAVASGTEVLDRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLALKTPDDLDAARELV  249 (253)
T ss_dssp             TTSCBCCCHHHHHHHHHHHTTSCEEHHHHHHHHHHTTCCEEEECSSCSHHHHHHHHHSTTCEEEECCSGGGHHHHHHHH
T ss_pred             CCCCHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCEEECCCHHHHHHHHHHH
T ss_conf             6552134110167665430000242999999999779999999198589999999875999736519999999999999


SCOP domain information

class: Alpha and beta proteins (a/b)
fold: FabD/lysophospholipase-like
superfamily: FabD/lysophospholipase-like
family: FabD-like
domain: Catalytic domain of malonyl-CoA ACP transacylase FabD
species: Streptomyces coelicolor A3(2) [TaxId: 100226]