PSIBLAST alignment of GI: 254780536 and protein with PDB id: 3hhd
>gi|288562972|pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965
>gi|288562973|pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain As A Framework For Inhibitor Design. Length = 965
Score = 99.6 bits (246), Expect = 6e-19, Method: Composition-based stats.
Identities = 62/321 (19%), Positives = 106/321 (33%), Gaps = 27/321 (8%)
Query: 5 LTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHT---LNQNLSDLMWNGSQEELTATCNA 61
G G+Q GMG L R D +S L+ + + ++
Sbjct: 496 FICSGMGTQWRGMGLSLM-RLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHS 554
Query: 62 QPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGK 121
+LTA+ + I ++ G + GHSLGE A S + + RG+
Sbjct: 555 FVSLTAIQIGLIDLLSCMG----LRPDGIVGHSLGEVACGYADGCLSQEEAVLAAYWRGQ 610
Query: 122 SMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKCA 181
++EA P + ++C A N V ISG Q V
Sbjct: 611 CIKEAHLPPGAMAAVGLSWEECKQRCPPGVVP-------ACHNSKDTVTISGPQAPVFEF 663
Query: 182 ADTCLNKGAKRAVFLPVSAPFHSSLMT----PVSKVMKWMLDSVTKQDPVVPILPNFCAS 237
+ +G FHS M P+ + +K ++ + A
Sbjct: 664 VEQLRKEGVFAKEVRTGGMAFHSYFMEAIAPPLLQELKKVIREPKPRSARWLSTSIPEAQ 723
Query: 238 PVSS--IDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDK-SL 294
SS + V + V ++E + H V V E+ +L + KR K S
Sbjct: 724 WHSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAV--VLEIAPHALLQAVLKRGLKPSC 781
Query: 295 SAVSI---SKVEDIDLALRSI 312
+ + + ++++ L I
Sbjct: 782 TIIPLMKKDHRDNLEFFLAGI 802