RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780536|ref|YP_003064949.1| acyl-carrier-protein
S-malonyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(314 letters)
>gnl|CDD|30679 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism].
Length = 310
Score = 334 bits (857), Expect = 3e-92
Identities = 153/309 (49%), Positives = 201/309 (65%), Gaps = 2/309 (0%)
Query: 1 MSTVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCN 60
T FPGQGSQ +GMG+DLY++ PEA+ F+E D L +L L++ G +EEL T N
Sbjct: 2 SKTAFVFPGQGSQSLGMGKDLYENSPEAKETFDEADEALGFDLWALVFEGPEEELNLTQN 61
Query: 61 AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG 120
QPAL VS+A RV+ + GL VK D +VAGHSLGEY+AL AA S D ++LVR RG
Sbjct: 62 TQPALLLVSLAAYRVLAEQGLGVKPD--FVAGHSLGEYSALAAAGVLSFEDALKLVRKRG 119
Query: 121 KSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKC 180
K MQEAVP G G M A++GLDD V+ C +A++ + EIAN N GQ+VISG ++A++
Sbjct: 120 KLMQEAVPRGEGGMAAVLGLDDEQVEKACEEAAQGTVVEIANYNSPGQIVISGTKEALEK 179
Query: 181 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS 240
AA+ GAKRA+ LPVS PFHS LM P + + L+ V DP+VP++ N A PV
Sbjct: 180 AAEILKEAGAKRAIPLPVSGPFHSPLMKPAADELAEALEKVRFSDPLVPVISNVDAKPVL 239
Query: 241 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSIS 300
+EI LL +Q+T VRW ET++ GV E+G GKVLTGLAKRI K L ++
Sbjct: 240 DGEEIRELLAKQLTSPVRWTETVETLKADGVTRFVEIGPGKVLTGLAKRILKGLGVRAVG 299
Query: 301 KVEDIDLAL 309
+ED++ AL
Sbjct: 300 SLEDLNAAL 308
>gnl|CDD|38137 KOG2926, KOG2926, KOG2926, Malonyl-CoA:ACP transacylase [Lipid
transport and metabolism].
Length = 386
Score = 194 bits (493), Expect = 4e-50
Identities = 102/302 (33%), Positives = 156/302 (51%), Gaps = 10/302 (3%)
Query: 3 TVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQ 62
+V+ FPGQG+Q +GMG+ L P AR +F E + L +L + NG +E+L T AQ
Sbjct: 64 SVILFPGQGAQSVGMGQYLLQ-NPAARRLFAEASNVLGYDLLKICVNGPKEKLDRTVIAQ 122
Query: 63 PALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKS 122
PA+ S+A + + G + ++ AG SLGEY AL A A S S ++LV+AR ++
Sbjct: 123 PAIDVSSLAALEQLRLLGPSIIENLVVTAGFSLGEYAALVFAGALSFSSALKLVKARAEA 182
Query: 123 MQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVG------ICEIANDNGGGQVVISGLQD 176
M EA MV I+GL V CA A+++ +CE+AN GQ V+SGL
Sbjct: 183 MSEASELVASGMVMILGLPTSKVQKACASANQLSASQEYPVCEVANYLSPGQRVVSGLVK 242
Query: 177 AVKCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCA 236
A++ + + +R L VS FH+ LM P + + L +V ++PV+P++ N
Sbjct: 243 ALESLEENAKSFKIRRMKRLAVSGAFHTRLMEPAVEPLTKALKAVEIKNPVIPVISNVDG 302
Query: 237 SPVSSIDEISRLLVEQVTGRVRWRETIQWF---ANHGVKSVYEVGSGKVLTGLAKRIDKS 293
P I + L +Q+ V+W +T++ G YEVG G+VL + KR +
Sbjct: 303 KPYRDPGHILKQLAKQIVRPVQWEQTLKTIYSKQGVGFPRSYEVGPGRVLVAILKRNNPQ 362
Query: 294 LS 295
Sbjct: 363 AD 364
>gnl|CDD|33130 COG3321, COG3321, Polyketide synthase modules and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 1061
Score = 132 bits (334), Expect = 1e-31
Identities = 95/312 (30%), Positives = 138/312 (44%), Gaps = 13/312 (4%)
Query: 3 TVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQN----LSDLMWNGSQEELTAT 58
TV FPGQGSQ GMGR+LY P F+ ++ L++ L ++++ L +
Sbjct: 527 TVFVFPGQGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPFLESI 586
Query: 59 CNAQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRA 118
AQPAL AVS+A + G V V GHSLGE A AA SL D +R+V
Sbjct: 587 DFAQPALFAVSVALAALWRSWG--VIPG--AVIGHSLGELAAAVAAGVLSLEDALRVVAT 642
Query: 119 RGKSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAV 178
RG+ MQ+ G G+M+A+ L R + +A N QVVI+G +A+
Sbjct: 643 RGRLMQQL--AGEGAMLAVE-LSLLAEVQELLALGRPQVP-LAAVNSPQQVVIAGDPEAI 698
Query: 179 KCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASP 238
+G RA L VS FHS LM P+ L + + P +P++ N
Sbjct: 699 AALIARLQAQG-VRARRLAVSHAFHSPLMDPILDEFAAALADLAPRPPQIPLISNVTGDL 757
Query: 239 VSSIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVS 298
++ V+ + VR+ + I G ++ EVG G VLT K+ +
Sbjct: 758 AGEPGGDAQYWVQHLRQPVRFADAIAAALADGARTFIEVGPGPVLTESIKQTLRDAILSI 817
Query: 299 ISKVEDIDLALR 310
+ D L
Sbjct: 818 ATLRRDAPELLS 829
>gnl|CDD|144338 pfam00698, Acyl_transf_1, Acyl transferase domain.
Length = 319
Score = 105 bits (263), Expect = 2e-23
Identities = 66/236 (27%), Positives = 96/236 (40%), Gaps = 25/236 (10%)
Query: 4 VLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQ----NLSDLMWNGSQEELTATC 59
V F GQGSQ GMG DL + P D ++ D++ N + L
Sbjct: 1 VFVFSGQGSQWAGMGMDLLKTSPVFAAAIARCDEAFKPQYGFSVLDVLRNNPEGLLERVD 60
Query: 60 NAQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRAR 119
QPAL A+ +A ++ G V V GHSLGE A A A SL + +V R
Sbjct: 61 VVQPALFAMQIALAALLRSYG--VTPAA--VVGHSLGEIAAAVVAGALSLEEAALVVALR 116
Query: 120 GKSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAV- 178
+ M++ P G M A +GL V+ + RV +A N VV++G Q+A+
Sbjct: 117 SRLMRQLAGP--GGMAA-VGLPAEEVEQLARWPDRV---VVAIVNSPRSVVVAGPQEALD 170
Query: 179 ----KCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPI 230
+ A RA + V HS + + + L + + P VP
Sbjct: 171 EFVERVEARG------VRARVIAVDYASHSPQVEAIGDALALALADIAPRTPRVPF 220
>gnl|CDD|36416 KOG1202, KOG1202, KOG1202, Animal-type fatty acid synthase and
related proteins [Lipid transport and metabolism].
Length = 2376
Score = 53.1 bits (127), Expect = 1e-07
Identities = 54/224 (24%), Positives = 89/224 (39%), Gaps = 21/224 (9%)
Query: 7 FPGQGSQVIGMGRDLY--DSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPA 64
+ G GSQ GM +DL + F ++ EV ++ D++ + N+ +
Sbjct: 505 YSGMGSQWAGMAKDLMKLERFRDSIQRSAEVLKPFGLDVIDVLTRSDESTFDNILNSFVS 564
Query: 65 LTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSMQ 124
+TA+ +A ++ G+ + GHSLGE A + T+ RG+S+
Sbjct: 565 ITAIQIALTDLLSCLGI----RPDGIVGHSLGELGCGYADGCLTQEQTVLAAYWRGQSIL 620
Query: 125 EAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKCAADT 184
+ P G+M A +GL S C V C + DN V ISG Q +V
Sbjct: 621 DTHLPK-GAMAA-VGLSWEQCKSRCPPDV-VPACHNSKDN----VTISGPQASV----FA 669
Query: 185 CLNKGAKRAVFLPV----SAPFHSSLMTPVSKVMKWMLDSVTKQ 224
+ + VF FHS M + ++ L+ V +
Sbjct: 670 FVEQLRAEGVFAKEVRTGGYAFHSPYMEAAAPPLRQSLEKVIPE 713
>gnl|CDD|33017 COG3204, COG3204, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 316
Score = 29.9 bits (67), Expect = 1.0
Identities = 18/89 (20%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 7 FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHT-LNQNLSDLMWNGSQEELTATCNAQPAL 65
F + + + R + E R + N+S L +N L A N A+
Sbjct: 51 FKAGQTNGLDLSRYIARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAI 110
Query: 66 TAVSMA--FIRVMEKNGLCVKRDISYVAG 92
++ IR + G I Y+ G
Sbjct: 111 VELTKEGDLIRTIPLTGFSDPETIEYIGG 139
>gnl|CDD|35813 KOG0593, KOG0593, KOG0593, Predicted protein kinase KKIAMRE
[General function prediction only].
Length = 396
Score = 28.4 bits (63), Expect = 3.0
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 30 LVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPALTAVSMAFIRVMEKNGLCVKRDI 87
LVFE DHT+ L + NG EL Q I KN C+ RDI
Sbjct: 78 LVFEYCDHTVLHEL-ERYPNGVPSELVKKYLYQLLKA------IHFCHKNN-CIHRDI 127
>gnl|CDD|132856 cd07217, Pat17_PNPLA8_PNPLA9_like4, Patatin-like phospholipase.
Patatin is a storage protein of the potato tuber that
shows Phospholipase A2 activity (PLA2; EC 3.1.1.4).
Patatin catalyzes the nonspecific hydrolysis of
phospholipids, glycolipids, sulfolipids, and mono- and
diacylglycerols, thereby showing lipid acyl hydrolase
activity. The active site includes an oxyanion hole with
a conserved GGxR motif; it is found in almost all the
members of this family. The catalytic dyad is formed by
a serine and an aspartate. Patatin belongs to the
alpha-beta hydrolase family which is identified by a
characteristic nucleophile elbow with a consensus
sequence of Sm-X-Nu-Sm (Sm = small residue, X = any
residue and Nu = nucleophile). Members of this family
have been found also in vertebrates. This family
includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9
(iPLA2-beta) like phospholipases from human as well as
the Pat17 isozyme from Solanum cardiophyllum.
Length = 344
Score = 28.2 bits (63), Expect = 3.3
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 89 YVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSM 123
+V G S G A C A S++D + G +M
Sbjct: 44 FVGGTSTGSIIAACIALGMSVTDLLSFYTLNGVNM 78
>gnl|CDD|36462 KOG1248, KOG1248, KOG1248, Uncharacterized conserved protein
[Function unknown].
Length = 1176
Score = 27.2 bits (60), Expect = 6.7
Identities = 16/73 (21%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 195 FLPVSAPFHSSLMT-PVSKVMKWMLDSVTKQDPVVPILPNFCASPV---SSIDEISRLLV 250
+P++ + + D++ D + +LP FC PV S +++ +L
Sbjct: 467 IVPLAMSLQLKAKKLKEAGSQVSLYDTL--VDQLWSLLPGFCNYPVDLAESFTDLAPILG 524
Query: 251 EQVTGRVRWRETI 263
+ R RETI
Sbjct: 525 AALLKRPELRETI 537
>gnl|CDD|144380 pfam00756, Esterase, Putative esterase. This family contains
Esterase D. However it is not clear if all members of
the family have the same function. This family is
related to the pfam00135 family.
Length = 243
Score = 27.0 bits (60), Expect = 6.7
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 90 VAGHSLGEYTALCAA 104
+AG S+G AL A
Sbjct: 115 LAGQSMGGLGALYLA 129
>gnl|CDD|37277 KOG2066, KOG2066, KOG2066, Vacuolar assembly/sorting protein VPS41
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 846
Score = 26.8 bits (59), Expect = 7.4
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 257 VRWRET-IQWFANHGVKSVYEVGSGKVLT 284
++WR I W + GVK VY+ + + LT
Sbjct: 166 IKWRGNLIAWANDDGVK-VYDTPTRQRLT 193
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.133 0.389
Gapped
Lambda K H
0.267 0.0661 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,572,013
Number of extensions: 178597
Number of successful extensions: 464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 14
Length of query: 314
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 220
Effective length of database: 4,232,491
Effective search space: 931148020
Effective search space used: 931148020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)