RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780536|ref|YP_003064949.1| acyl-carrier-protein
S-malonyltransferase [Candidatus Liberibacter asiaticus str. psy62]
(314 letters)
>gnl|CDD|161724 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase.
The seed alignment for this family of proteins contains
a single member each from a number of bacterial species
but also an additional pair of closely related,
uncharacterized proteins from B. subtilis, one of which
has a long C-terminal extension.
Length = 290
Score = 288 bits (740), Expect = 8e-79
Identities = 128/294 (43%), Positives = 171/294 (58%), Gaps = 4/294 (1%)
Query: 1 MSTVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCN 60
M FPGQGSQ +GMG+DLY+ +P A+ +F++ L +L L G EEL T
Sbjct: 1 MKIAYVFPGQGSQTVGMGKDLYEQYPIAKELFDQASEALGYDLKKLCQEGPAEELNKTQY 60
Query: 61 AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG 120
QPAL VS +++ G +K D + AGHSLGEY+AL AA A ++LV+ RG
Sbjct: 61 TQPALYVVSAILYLKLKEQG-GLKPD--FAAGHSLGEYSALVAAGALDFETALKLVKKRG 117
Query: 121 KSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKC 180
+ MQEAVP G G+M A+IGLD+ + C +A+ + ++AN N GQVVISG +D V+
Sbjct: 118 ELMQEAVPEGGGAMAAVIGLDEEQLAQACEEATENDV-DLANFNSPGQVVISGTKDGVEA 176
Query: 181 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS 240
AA GAKRAV L VS FHS M P ++ L++ DP VP++ N A P +
Sbjct: 177 AAALFKEMGAKRAVPLEVSGAFHSRFMKPAAEKFAETLEACQFNDPTVPVISNVDAKPYT 236
Query: 241 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSL 294
+ D I L EQ+T VRW ++++ GV EVG GKVLTGL KRI L
Sbjct: 237 NGDRIKEKLSEQLTSPVRWTDSVEKLMARGVTEFAEVGPGKVLTGLIKRIKNDL 290
>gnl|CDD|178353 PLN02752, PLN02752, [acyl-carrier protein] S-malonyltransferase.
Length = 343
Score = 201 bits (513), Expect = 2e-52
Identities = 104/300 (34%), Positives = 162/300 (54%), Gaps = 7/300 (2%)
Query: 7 FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPALT 66
FPGQG+Q +GMG++ P A+ +F++ L +L D+ NG +E+L +T +QPA+
Sbjct: 44 FPGQGAQAVGMGKEA-AEVPAAKALFDKASEILGYDLLDVCVNGPKEKLDSTVVSQPAIY 102
Query: 67 AVSMAFIRVM--EKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSMQ 124
S+A + + G V + AG SLGEYTAL A A S D ++LV+ RG++MQ
Sbjct: 103 VASLAAVEKLRARDGGQAVIDSVDVCAGLSLGEYTALVFAGALSFEDGLKLVKLRGEAMQ 162
Query: 125 EAVPPGLGSMVAIIGLDDCVVDSICAQASR-VG---ICEIANDNGGGQVVISGLQDAVKC 180
A G MV++IGLD V +CA A+ VG + +IAN G +SG + +
Sbjct: 163 AAADAGPSGMVSVIGLDSDKVQELCAAANEEVGEDDVVQIANYLCPGNYAVSGGKKGIDA 222
Query: 181 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS 240
+ A+ V L V+ FH+S M P ++ L +V + P +P++ N A P S
Sbjct: 223 VEAKAKSFKARMTVRLAVAGAFHTSFMEPAVDALEAALAAVEIRTPRIPVISNVDAQPHS 282
Query: 241 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSIS 300
I ++L QVT V+W T++ G++ YE+G GKV+ G+ KR+DK +++
Sbjct: 283 DPATIKKILARQVTSPVQWETTVKTLLEKGLEKSYELGPGKVIAGIVKRVDKGAKIENVT 342
>gnl|CDD|129060 smart00827, PKS_AT, Acyl transferase domain in polyketide synthase
(PKS) enzymes.
Length = 298
Score = 176 bits (449), Expect = 7e-45
Identities = 102/306 (33%), Positives = 144/306 (47%), Gaps = 32/306 (10%)
Query: 7 FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQ----NLSDLMWN--GSQEELTATCN 60
F GQGSQ GMGR+LY++ P R +E D L +L D+++ G+ L T
Sbjct: 1 FTGQGSQWPGMGRELYETEPVFRAALDECDAALQPLLGWSLLDVLFGEDGAASLLRRTEV 60
Query: 61 AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG 120
AQPAL AV +A R+ G+ V GHSLGE A A SL D RLV ARG
Sbjct: 61 AQPALFAVQVALARLWRSWGVRP----DAVVGHSLGEIAAAYVAGVLSLEDAARLVAARG 116
Query: 121 KSMQEAVPPGLGSMVAI-IGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVK 179
+ MQ PG G+M+A+ + ++ V+ + A G +A NG VV+SG +DAV
Sbjct: 117 RLMQAL--PGGGAMLAVGLSEEE--VEELLAG--YGGRVSVAAVNGPSSVVLSGDEDAVD 170
Query: 180 CAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPV 239
A +G RA L V FHS M P+ + L +T + P +P + S V
Sbjct: 171 ELAAALEARG-IRARRLKVDHAFHSPHMDPILDEFREALAGITPRPPRIPFV-----STV 224
Query: 240 SS--IDEISRLL-----VEQVTGRVRWRETIQWFANHGVKSVY-EVGSGKVLTGLAKRID 291
+ ID + L V + VR+ + ++ +V+ EVG VLTG K+
Sbjct: 225 TGELIDG-AELDDAEYWVRNLREPVRFADAVRALLAEQGVTVFLEVGPHPVLTGPIKQTL 283
Query: 292 KSLSAV 297
+
Sbjct: 284 PAAGGA 289
>gnl|CDD|132175 TIGR03131, malonate_mdcH, malonate decarboxylase, epsilon subunit.
Members of this protein family are the epsilon subunit
of malonate decarboxylase. This subunit has
malonyl-CoA/dephospho-CoA acyltransferase activity.
Malonate decarboxylase may be a soluble enzyme, or
linked to membrane subunits and active as a sodium pump.
The epsilon subunit is closely related to the malonyl
CoA-acyl carrier protein (ACP) transacylase family
described by TIGR00128, but acts on an ACP subunit of
malonate decarboxylase that has an unusual coenzyme A
derivative as its prothetic group.
Length = 295
Score = 175 bits (447), Expect = 1e-44
Identities = 98/306 (32%), Positives = 138/306 (45%), Gaps = 13/306 (4%)
Query: 5 LTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCNAQPA 64
L FPGQGSQ GM +L D P V E L + +L E L +T +AQ
Sbjct: 3 LLFPGQGSQRAGMLAELPDH-PAVAAVLAEASDVLGIDPRELD---DAEALASTRSAQLC 58
Query: 65 LTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARGKSMQ 124
+ A +A R + + S VAG+S+GEY A A + D +RLV R M
Sbjct: 59 ILAAGVAAWRALLALL--PRP--SAVAGYSVGEYAAAVVAGVLTFDDALRLVALRAALMD 114
Query: 125 EAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKCAADT 184
+AVP G G M+A++GLD V+++ A+ +A N QVVI+G + A++ A+
Sbjct: 115 QAVPGGYG-MLAVLGLDLAAVEALIAKHG----VYLAIINAPDQVVIAGSRAALRAVAEL 169
Query: 185 CLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVSSIDE 244
GA RA L V P H+ L+ ++ L + P +P L A V +
Sbjct: 170 ARAAGASRAKRLAVRVPSHTPLLAKAAEQFAEALAEIPLAAPRLPYLSGIDARLVRDAAQ 229
Query: 245 ISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSISKVED 304
I L Q+ V W + +Q G + V E+G G VLT LA L A S
Sbjct: 230 IRDDLARQIATPVDWHDCMQAAYERGARLVIELGPGDVLTKLANEAFPELPARSADDFRS 289
Query: 305 IDLALR 310
+D L
Sbjct: 290 LDGLLA 295
>gnl|CDD|163029 TIGR02813, omega_3_PfaA, polyketide-type polyunsaturated fatty acid
synthase PfaA. Members of the seed for this alignment
are involved in omega-3 polyunsaturated fatty acid
biosynthesis, such as the protein PfaA from the
eicosapentaenoic acid biosynthesis operon in
Photobacterium profundum strain SS9. PfaA is encoded
together with PfaB, PfaC, and PfaD, and the functions of
the individual polypeptides have not yet been described.
More distant homologs of PfaA, also included with the
reach of this model, appear to be involved in
polyketide-like biosynthetic mechanisms of
polyunsaturated fatty acid biosynthesis, an alternative
to the more familiar iterated mechanism of chain
extension and desaturation, and in most cases are
encoded near genes for homologs of PfaB, PfaC, and/or
PfaD.
Length = 2582
Score = 133 bits (336), Expect = 5e-32
Identities = 101/330 (30%), Positives = 145/330 (43%), Gaps = 33/330 (10%)
Query: 7 FPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQN----LSDLMW----------NGSQ 52
F GQGSQ + MGR+L +FPE R ++D Q LS +++ +
Sbjct: 585 FAGQGSQYLNMGRELACNFPEVRQAAADMDSVFTQAGKGALSPVLYPIPVFNDESRKAQE 644
Query: 53 EELTATCNAQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDT 112
E LT T +AQ A+ +SM ++ + G K D AGHS GE +ALCAA S D
Sbjct: 645 EALTNTQHAQSAIGTLSMGQYKLFTQAGF--KAD--MTAGHSFGELSALCAAGVISDDDY 700
Query: 113 IRLVRARGKSMQEAVPPG---LGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQV 169
+ L +RG++M A P G +G M A+I I IAN N Q+
Sbjct: 701 MMLAFSRGQAM--AAPTGEADIGFMYAVILAVVGSPTVIANCIKDFEGVSIANYNSPTQL 758
Query: 170 VISGLQDAVKCAADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVP 229
VI+G+ ++ AA KG K A+ LPVS FH+ L+ K +D P+VP
Sbjct: 759 VIAGVSTQIQIAAKALKEKGFK-AIPLPVSGAFHTPLVAHAQKPFSAAIDKAKFNTPLVP 817
Query: 230 ILPNFCASPVSSID--EISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLA 287
+ N + S D I + L + V + E ++ G + E G +L L
Sbjct: 818 LYSNGTGK-LHSNDAAAIKKALKNHMLQSVHFSEQLEAMYAAGARVFVEFGPKNILQKLV 876
Query: 288 KRI--DKSLSAVSIS----KVEDIDLALRS 311
+ DK +IS D D+ LR
Sbjct: 877 ENTLKDKENELCAISINPNPKGDSDMQLRQ 906
>gnl|CDD|149298 pfam08161, NUC173, NUC173 domain. This is the central domain of of
novel family of hypothetical nucleolar proteins.
Length = 198
Score = 28.7 bits (65), Expect = 2.3
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 230 ILPNFCASP---VSSIDEISRLLVEQVTGRVRWRETI 263
+LP FC P S D + L + RV R TI
Sbjct: 154 LLPGFCDLPLDLRESFDSFAETLGNALYERVELRTTI 190
>gnl|CDD|183713 PRK12740, PRK12740, elongation factor G; Reviewed.
Length = 668
Score = 27.4 bits (62), Expect = 4.7
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 114 RLVRARGKSMQEAVPPGLGSMVAIIGLDDCVV-DSICAQA 152
RL R GK +E G +VA+ L D D++C +
Sbjct: 334 RLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKG 373
>gnl|CDD|151613 pfam11171, DUF2958, Protein of unknown function (DUF2958). Some
members are annotated as lipoproteins however this
cannot be confirmed. This family of proteins has no
known function.
Length = 112
Score = 27.3 bits (61), Expect = 5.6
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 63 PALTAVSMAFIR-VMEKNGLCVKRDISYVAGHSLGEYTAL 101
P L VS++ + + GL ++RD+ + A L Y
Sbjct: 64 PELGYVSLSELASIRGPLGLPIERDLYFRAEFPLSVYARA 103
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.133 0.389
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,961,781
Number of extensions: 308517
Number of successful extensions: 646
Number of sequences better than 10.0: 1
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 14
Length of query: 314
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 221
Effective length of database: 3,984,929
Effective search space: 880669309
Effective search space used: 880669309
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)