RPSBLAST alignment of GI: 254780536 and protein with PDBid: 2h1y
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacylase; FABD, MCAT, transferase; 2.50A {Helicobacter pylori SS1} Length = 321
Score = 170 bits (431), Expect = 3e-43
Identities = 94/312 (30%), Positives = 153/312 (49%), Gaps = 7/312 (2%)
Query: 1 MSTVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCN 60
M L FPGQGSQ IGMG+ Y+ A+ +FE + L ++ ++ + E L +
Sbjct: 13 MQYALLFPGQGSQCIGMGKSFYEGHTLAKELFERASNALKVDMKKTLFEEN-ELLKESAY 71
Query: 61 AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG 120
QPA+ VS +++ K + + GHSLGE +A+ + A ++L RG
Sbjct: 72 TQPAIYLVSYIAYQLLNKQANGGLK-PVFALGHSLGEVSAVSLSGALDFEKALKLTHQRG 130
Query: 121 KSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKC 180
K MQEA SM+ ++G+ + + S+C + V AN NGG QVV++G++D +K
Sbjct: 131 KMMQEACANKDASMMVVLGVSEESLLSLCQRTKNV---WCANFNGGMQVVLAGVKDDLKA 187
Query: 181 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS 240
T GAKR VFL +S H + P+ + +L+ K I+ N
Sbjct: 188 LEPTLKEMGAKRVVFLEMSVASHCPFLEPMIFKFQELLEKSLKDKFHFEIISNATNEAYH 247
Query: 241 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSIS 300
+ + LL Q+T VR+++ ++ N V +E+G G VL GL KR+ +S+
Sbjct: 248 NKAKAVELLSLQLTQPVRYQDCVKS-NNDRVDIFFELGCGSVLKGLNKRLSNKP-TISVG 305
Query: 301 KVEDIDLALRSI 312
+ +D A+ +
Sbjct: 306 DNKGLDEAIEFL 317