BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780536|ref|YP_003064949.1| acyl-carrier-protein S-malonyltransferase [Candidatus Liberibacter asiaticus str. psy62] (314 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780536|ref|YP_003064949.1| acyl-carrier-protein S-malonyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 314 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/314 (100%), Positives = 314/314 (100%) Query: 1 MSTVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCN 60 MSTVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCN Sbjct: 1 MSTVLTFPGQGSQVIGMGRDLYDSFPEARLVFEEVDHTLNQNLSDLMWNGSQEELTATCN 60 Query: 61 AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG 120 AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG Sbjct: 61 AQPALTAVSMAFIRVMEKNGLCVKRDISYVAGHSLGEYTALCAAKAFSLSDTIRLVRARG 120 Query: 121 KSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKC 180 KSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKC Sbjct: 121 KSMQEAVPPGLGSMVAIIGLDDCVVDSICAQASRVGICEIANDNGGGQVVISGLQDAVKC 180 Query: 181 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS 240 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS Sbjct: 181 AADTCLNKGAKRAVFLPVSAPFHSSLMTPVSKVMKWMLDSVTKQDPVVPILPNFCASPVS 240 Query: 241 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSIS 300 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSIS Sbjct: 241 SIDEISRLLVEQVTGRVRWRETIQWFANHGVKSVYEVGSGKVLTGLAKRIDKSLSAVSIS 300 Query: 301 KVEDIDLALRSIVG 314 KVEDIDLALRSIVG Sbjct: 301 KVEDIDLALRSIVG 314 >537021.9.peg.759_1 Length = 58 Score = 23.5 bits (49), Expect = 4.4, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 15/24 (62%) Query: 244 EISRLLVEQVTGRVRWRETIQWFA 267 +I+ LL+ + TG + W+E F+ Sbjct: 4 DIAALLIRRTTGEIEWQEVYIEFS 27 >gi|254780823|ref|YP_003065236.1| double-strand break repair protein AddB [Candidatus Liberibacter asiaticus str. psy62] Length = 1040 Score = 23.1 bits (48), Expect = 6.8, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 20/35 (57%) Query: 280 GKVLTGLAKRIDKSLSAVSISKVEDIDLALRSIVG 314 GK L+ L +I ++ S + + +E ID+ R I G Sbjct: 581 GKTLSSLFSKIIETGSCIKANAIEWIDIITRLIDG 615 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.133 0.389 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 189,830 Number of Sequences: 1233 Number of extensions: 7394 Number of successful extensions: 21 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 17 Number of HSP's gapped (non-prelim): 4 length of query: 314 length of database: 328,796 effective HSP length: 74 effective length of query: 240 effective length of database: 237,554 effective search space: 57012960 effective search space used: 57012960 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)