HHsearch alignment for GI: 254780537 and conserved domain: cd01020
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=457.77 Aligned_cols=255 Identities=20% Similarity=0.326 Sum_probs=221.8
Q ss_pred CCCEEEEECHHHHHHHHHHCCCEEEEEEEE-CCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf 882899975289999998518914899962-6889801202271245776037899998876106899999742355752
Q gi|254780537|r 22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLV-EAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKI 100 (294)
Q Consensus 22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li-~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~ 100 (294)
T Consensus 1 gkl~Vvat~~~l~dl~~~I~Gd~v~V~~li~~p~~dPH~yep~p~d~~~l~~Adlvv~nG~~lE~wl~k~~~~~~~-~-~ 78 (264)
T cd01020 1 GKINVVASTNFWGSVAEAVGGDHVEVTSIITNPDVDPHDFEPTPTDAAKVSTADIVVYNGGGYDPWMTKLLADTKD-V-I 78 (264)
T ss_pred CCCEEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCC-C-E
T ss_conf 9737999771999999998288169999447999896568799999999962989999588816899999852899-6-6
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 11123742022210012334630111221356789999999998643188899999989986301455337899886307
Q gi|254780537|r 101 ITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKV 180 (294)
Q Consensus 101 i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~ 180 (294)
T Consensus 79 ~~~~~-------~~~~~~~~~~dPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~L~~~~~~~~~~- 150 (264)
T cd01020 79 VIAAD-------LDGHDDKEGDNPHLWYDPETMSKVANALADALVKADPDNKKYYQANAKKFVASLKPLAAKIAELSAK- 150 (264)
T ss_pred EEECC-------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 88336-------6666677999989377999999999999999998690217999999999999999999999985145-
Q ss_pred CCCCCEEEEECCCCHHHHHHCCCEEEEEC----CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH---HH
Q ss_conf 84473699826652145775297288722----688640007899999997620169718998278997999999---99
Q gi|254780537|r 181 DPEKRWFVTSEGCLVYLAEDFGFKSLYLW----PINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV---AY 253 (294)
Q Consensus 181 p~~~~~~v~~H~af~Y~~~~yGl~~~~~~----~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i---a~ 253 (294)
T Consensus 151 -~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~q~~~~~a~~i~~~a~ 229 (264)
T cd01020 151 -YKGAPVAATEPVFDYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQIDALIVNPQQASSATTNITGLAK 229 (264)
T ss_pred -CCCCEEEEECCCHHHHHHHCCCEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf -7898699965417999997799450442034123788999999999999999986999999828988089999999998
Q ss_pred HHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8299344432012378777886899999999999998620
Q gi|254780537|r 254 ETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 254 e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
T Consensus 230 ~~~v~v~~------l~e~~~~~~tY~~~M~~Nl~~i~~aL 263 (264)
T cd01020 230 RSGVPVVE------VTETMPNGTTYLTWMLKQVDQLEKAL 263 (264)
T ss_pred HCCCEEEE------CCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 55956984------25678999989999999999999973