Query         gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 294
No_of_seqs    135 out of 2447
Neff          7.8 
Searched_HMMs 39220
Date          Sun May 29 22:39:19 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780537.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 cd01137 PsaA Metal binding pro 100.0       0       0  522.9  27.9  276   17-293    11-286 (287)
  2 cd01016 TroA Metal binding pro 100.0       0       0  505.6  27.4  270   23-293     1-275 (276)
  3 PRK09545 znuA high-affinity zi 100.0       0       0  501.0  29.2  286    2-293     1-307 (308)
  4 cd01017 AdcA Metal binding pro 100.0       0       0  490.1  28.0  271   21-293     1-281 (282)
  5 cd01019 ZnuA Zinc binding prot 100.0       0       0  486.9  27.5  267   21-293     1-286 (286)
  6 COG0803 LraI ABC-type metal io 100.0       0       0  473.6  28.3  270   22-293    31-301 (303)
  7 pfam01297 SBP_bac_9 Periplasmi 100.0       0       0  457.7  26.8  263   26-293     1-271 (272)
  8 cd01020 TroA_b Metal binding p 100.0       0       0  457.8  26.3  255   22-293     1-263 (264)
  9 cd01018 ZntC Metal binding pro 100.0       0       0  449.2  26.8  254   22-289     1-264 (266)
 10 COG4531 ZnuA ABC-type Zn2+ tra 100.0       0       0  389.8  22.4  287    1-293     3-316 (318)
 11 cd01145 TroA_c Periplasmic bin 100.0       0       0  368.3  18.4  197   22-221     1-203 (203)
 12 cd00636 TroA-like Helical back  98.4 2.7E-05 6.9E-10   56.1  13.3  132   25-188     2-146 (148)
 13 pfam00148 Oxidored_nitro Nitro  94.9    0.36 9.1E-06   28.3  19.1  151  128-294   227-398 (398)
 14 TIGR03659 IsdE heme ABC transp  93.8    0.63 1.6E-05   26.6  19.6  228   23-294    35-289 (289)
 15 TIGR02467 CbiE precorrin-6y C5  89.3     1.9 4.9E-05   23.3   6.9   92  182-274    93-188 (210)
 16 PRK10957 iron-enterobactin tra  87.9     2.3   6E-05   22.7  11.7   21   23-43     46-66  (319)
 17 cd01981 Pchlide_reductase_B Pc  87.4     2.5 6.4E-05   22.5  18.7  156  128-293   246-427 (430)
 18 PRK10355 xylF D-xylose transpo  85.0     3.3 8.3E-05   21.8  10.7  103    1-107     3-116 (330)
 19 COG0075 Serine-pyruvate aminot  82.7     4.1  0.0001   21.1   9.4   53   22-78     80-137 (383)
 20 cd03795 GT1_like_4 This family  82.6     4.1  0.0001   21.1   6.7   18  242-261   277-294 (357)
 21 PRK06027 purU formyltetrahydro  81.8     3.7 9.4E-05   21.4   5.1   74  162-240    98-171 (285)
 22 PRK10954 periplasmic protein d  81.4     3.1 7.9E-05   21.9   4.6   68    1-77      1-75  (207)
 23 TIGR02155 PA_CoA_ligase phenyl  80.8     4.3 0.00011   20.9   5.2   93  183-290   115-219 (431)
 24 cd03805 GT1_ALG2_like This fam  80.7     4.8 0.00012   20.7   5.3   16   33-48     19-34  (392)
 25 PRK13010 purU formyltetrahydro  80.6     4.8 0.00012   20.6   5.6   73  163-240   104-176 (289)
 26 TIGR03156 GTP_HflX GTP-binding  79.9       5 0.00013   20.5   7.1   72   29-102    18-94  (351)
 27 PRK13011 formyltetrahydrofolat  79.2     5.3 0.00014   20.3   5.3   72  163-239   101-172 (287)
 28 cd03817 GT1_UGDG_like This fam  79.1     4.8 0.00012   20.6   4.9   20   33-52     20-39  (374)
 29 TIGR02668 moaA_archaeal probab  78.4     5.6 0.00014   20.2   5.3   66  197-270    57-127 (324)
 30 pfam00121 TIM Triosephosphate   77.1     6.1 0.00016   19.9   6.7   59  184-258   157-225 (243)
 31 PRK10576 iron-hydroxamate tran  76.7     6.2 0.00016   19.9  15.0  259    1-293     5-289 (292)
 32 cd03814 GT1_like_2 This family  76.1     5.7 0.00014   20.1   4.6   24   33-56     20-43  (364)
 33 TIGR01885 Orn_aminotrans ornit  75.4       4  0.0001   21.1   3.7   60  196-257    92-159 (426)
 34 TIGR01162 purE phosphoribosyla  74.6     5.6 0.00014   20.2   4.2   63  197-262    20-83  (159)
 35 cd03820 GT1_amsD_like This fam  74.2     4.6 0.00012   20.8   3.7   10   71-80     82-91  (348)
 36 smart00187 INB Integrin beta s  73.9     7.3 0.00019   19.4   6.7  123  155-291   199-340 (423)
 37 PHA01735 hypothetical protein   73.5     2.9 7.4E-05   22.1   2.6   37  214-250    27-63  (76)
 38 PRK07810 O-succinylhomoserine   73.3     7.6 0.00019   19.3   7.8   32  145-176   252-283 (406)
 39 cd01974 Nitrogenase_MoFe_beta   72.4       8  0.0002   19.1  16.0  149  128-293   259-433 (435)
 40 cd03808 GT1_cap1E_like This fa  71.8     7.6 0.00019   19.3   4.4   20   33-52     16-35  (359)
 41 cd01965 Nitrogenase_MoFe_beta_  70.3     8.8 0.00022   18.9  16.9  149  128-293   255-427 (428)
 42 TIGR01591 Fdh-alpha formate de  70.0     4.4 0.00011   20.9   2.9  172   29-244   112-304 (694)
 43 PRK11058 putative GTPase HflX;  69.9       9 0.00023   18.8   7.4   73   28-102    25-102 (426)
 44 cd03800 GT1_Sucrose_synthase T  69.4     9.2 0.00023   18.7   7.5   19   33-51     27-45  (398)
 45 pfam00362 Integrin_beta Integr  69.0     9.4 0.00024   18.7   6.9   64  217-291   278-341 (424)
 46 COG0788 PurU Formyltetrahydrof  68.6     9.6 0.00024   18.6   5.3   72  163-239   101-172 (287)
 47 cd04962 GT1_like_5 This family  68.3     9.7 0.00025   18.6   5.9   18   33-50     18-35  (371)
 48 CHL00076 chlB photochlorophyll  67.6      10 0.00025   18.5   9.8   74  183-261   302-394 (510)
 49 PRK07789 acetolactate synthase  66.8      10 0.00026   18.4   7.9   81   20-102   230-327 (612)
 50 PTZ00242 protein tyrosine phos  66.8     6.8 0.00017   19.6   3.2   48  216-267    27-76  (172)
 51 TIGR00514 accC acetyl-CoA carb  66.7     9.2 0.00023   18.7   3.9   86  173-260    63-157 (451)
 52 cd00003 PNPsynthase Pyridoxine  66.6      10 0.00027   18.4   5.3   41  219-262   109-150 (234)
 53 TIGR03525 GldK gliding motilit  66.6     6.1 0.00016   19.9   3.0   31    1-31      1-31  (449)
 54 TIGR01511 ATPase-IB1_Cu copper  66.5      11 0.00027   18.3   4.5   39  221-260   375-413 (545)
 55 PRK13962 bifunctional phosphog  66.3      11 0.00027   18.3   6.0   21   60-80    294-318 (653)
 56 PRK08462 biotin carboxylase; V  66.3     9.1 0.00023   18.8   3.8   12   70-82     74-85  (446)
 57 TIGR01326 OAH_OAS_sulfhy O-ace  65.4      11 0.00028   18.2   6.1   61  191-260   110-179 (434)
 58 pfam03740 PdxJ Pyridoxal phosp  64.7      11 0.00029   18.1   5.3   46  219-268   110-156 (239)
 59 cd03823 GT1_ExpE7_like This fa  64.5      11 0.00029   18.1   5.0   19   34-52     22-40  (359)
 60 TIGR00382 clpX ATP-dependent C  64.4      11 0.00029   18.1   5.4   61  217-282   140-202 (452)
 61 pfam11897 DUF3417 Protein of u  64.4     5.4 0.00014   20.3   2.4   74  122-205    40-117 (119)
 62 KOG0202 consensus               64.3      12 0.00029   18.1   5.4  108  144-259   517-625 (972)
 63 KOG0553 consensus               64.1       6 0.00015   20.0   2.6   48  121-170   143-200 (304)
 64 PRK07798 acyl-CoA synthetase;   64.0      12  0.0003   18.0   8.0   18   24-41    101-118 (532)
 65 KOG1111 consensus               63.8     8.2 0.00021   19.1   3.2   67   48-117   171-246 (426)
 66 PRK07812 O-acetylhomoserine am  63.6      12  0.0003   18.0   9.1   29  145-173   279-307 (436)
 67 cd00614 CGS_like CGS_like: Cys  62.4      12 0.00032   17.8   7.9   83  145-230   219-307 (369)
 68 PRK12696 flgH flagellar basal   62.1     7.2 0.00018   19.4   2.7   21    1-21      1-21  (238)
 69 TIGR01116 ATPase-IIA1_Ca calci  61.7      13 0.00033   17.8   5.2   56  198-257   450-505 (800)
 70 PTZ00333 triosephosphate isome  61.6      13 0.00033   17.7   7.3   59  184-258   161-230 (252)
 71 COG2262 HflX GTPases [General   61.3      13 0.00033   17.7   6.2  128   29-158    21-187 (411)
 72 PRK11627 hypothetical protein;  61.2      11 0.00028   18.3   3.4   20    1-20      1-20  (192)
 73 PRK05265 pyridoxine 5'-phospha  61.2      13 0.00033   17.7   5.3   41  219-262   112-153 (240)
 74 PRK10780 periplasmic chaperone  61.1     5.6 0.00014   20.2   1.9   34    1-34      1-34  (161)
 75 PRK11411 fecB iron-dicitrate t  60.8      13 0.00034   17.6  12.4   70  191-267   195-271 (297)
 76 PRK08043 bifunctional acyl-[ac  59.7      14 0.00035   17.5   3.8   10  216-225   623-632 (719)
 77 cd00311 TIM Triosephosphate is  59.6      14 0.00035   17.5   7.1   60  183-258   154-223 (242)
 78 COG0648 Nfo Endonuclease IV [D  59.5      13 0.00032   17.8   3.5   20  214-233   149-168 (280)
 79 PRK10270 hypothetical protein;  59.5     5.7 0.00014   20.1   1.7   15    1-15      1-15  (340)
 80 cd03821 GT1_Bme6_like This fam  59.5      14 0.00036   17.5   6.5   19   33-51     20-38  (375)
 81 cd01976 Nitrogenase_MoFe_alpha  59.1      14 0.00036   17.5  15.5  146  128-294   252-420 (421)
 82 PRK08133 O-succinylhomoserine   58.9      14 0.00036   17.4   7.6   50  145-194   240-289 (391)
 83 cd06362 PBP1_mGluR Ligand bind  58.2      15 0.00037   17.4   6.5   11   71-81    229-239 (452)
 84 KOG2836 consensus               58.0      14 0.00036   17.5   3.6   29  217-245    25-55  (173)
 85 COG3383 Uncharacterized anaero  57.9      15 0.00038   17.3   8.8  139   30-178   371-526 (978)
 86 pfam10673 DUF2487 Protein of u  57.6      15 0.00038   17.3   8.4   97  169-293    40-139 (143)
 87 COG0240 GpsA Glycerol-3-phosph  56.8      15 0.00039   17.2   4.6   76   34-110    34-111 (329)
 88 PRK07811 cystathionine gamma-s  56.4      16  0.0004   17.2   7.0   32  145-176   237-268 (386)
 89 cd05844 GT1_like_7 Glycosyltra  56.2      16  0.0004   17.1   7.5   39   68-109   138-176 (367)
 90 COG1464 NlpA ABC-type metal io  56.2      16  0.0004   17.1   3.7  126   22-163    29-176 (268)
 91 PRK08134 O-acetylhomoserine am  55.6      16 0.00041   17.1   7.8   28  145-172   275-302 (433)
 92 TIGR00064 ftsY signal recognit  54.6      17 0.00043   17.0   7.1   84  183-270   110-215 (284)
 93 cd03799 GT1_amsK_like This is   53.8      17 0.00044   16.9   7.1   17   67-83    125-141 (355)
 94 cd01967 Nitrogenase_MoFe_alpha  53.0      18 0.00045   16.8  16.3  147  128-294   240-405 (406)
 95 PRK00031 lolA outer-membrane l  52.3     8.9 0.00023   18.8   1.8   21    1-21      1-21  (201)
 96 PRK00315 potassium-transportin  52.1     1.8 4.6E-05   23.5  -1.8   31  117-150   124-154 (195)
 97 pfam01591 6PF2K 6-phosphofruct  52.1      18 0.00047   16.7   5.8   39  205-246    98-136 (223)
 98 pfam01053 Cys_Met_Meta_PP Cys/  52.1      18 0.00047   16.7   8.4   31  145-175   232-262 (381)
 99 PRK06176 cystathionine gamma-s  51.1      19 0.00048   16.6   8.3   34  145-178   228-261 (379)
100 PRK02991 D-serine dehydratase;  51.0      19 0.00048   16.6   5.9   85  172-273   253-338 (443)
101 PRK06814 acylglycerophosphoeth  50.9      19 0.00049   16.6   3.9   16  214-229  1039-1054(1139)
102 PRK00549 competence damage-ind  50.9      19 0.00049   16.6   3.7   55   33-90     22-76  (413)
103 PRK01326 prsA foldase protein   50.7      17 0.00044   16.9   3.0   29    1-29      1-33  (310)
104 PRK09701 D-allose transporter   50.7      19 0.00049   16.6   9.8  102    1-108     1-118 (311)
105 cd03801 GT1_YqgM_like This fam  49.8      20  0.0005   16.5   6.2   21   33-53     20-40  (374)
106 pfam07355 GRDB Glycine/sarcosi  49.2      20 0.00052   16.4   4.1   52   31-84     35-91  (349)
107 PRK05586 biotin carboxylase; V  49.0     9.9 0.00025   18.5   1.6   13   70-83     72-84  (447)
108 PRK13601 putative ribosomal pr  49.0      20 0.00052   16.4   4.7   50  221-270    13-65  (84)
109 PRK00094 gpsA NAD(P)H-dependen  48.8      21 0.00052   16.4   3.7   75   34-109    34-110 (325)
110 TIGR01918 various_sel_PB selen  48.6      18 0.00045   16.8   2.8  177   28-261   185-371 (433)
111 TIGR00469 pheS_mito phenylalan  47.8      20  0.0005   16.5   3.0   28   59-86    156-183 (460)
112 cd06447 D-Ser-dehyd D-Serine d  47.5      21 0.00055   16.2   6.2   85  172-273   228-313 (404)
113 cd01968 Nitrogenase_NifE_I Nit  47.5      21 0.00055   16.2  16.4  148  128-294   238-406 (410)
114 TIGR03087 stp1 sugar transfera  47.5      21 0.00055   16.2   6.5   14  244-259   312-325 (397)
115 TIGR02151 IPP_isom_2 isopenten  47.5      21 0.00055   16.2   5.9   66  211-283   164-233 (349)
116 pfam01261 AP_endonuc_2 Xylose   47.2      22 0.00055   16.2   9.2   22  217-238   132-153 (201)
117 PRK13835 conjugal transfer pro  47.0      15 0.00038   17.3   2.2   25    1-25      1-25  (144)
118 pfam12262 Lipase_bact_N Bacter  46.9      22 0.00056   16.2   3.4   32    1-32      1-33  (269)
119 PRK08248 O-acetylhomoserine am  46.8      22 0.00056   16.2   8.5   30  145-174   275-304 (431)
120 COG1022 FAA1 Long-chain acyl-C  46.3      22 0.00057   16.1   4.6   88  122-210   278-385 (613)
121 pfam09171 DUF1886 Domain of un  46.2      22 0.00057   16.1   7.9  116  159-282   115-234 (246)
122 TIGR02622 CDP_4_6_dhtase CDP-g  46.2      22 0.00057   16.1   6.3   68  183-251     4-77  (361)
123 PRK09423 gldA glycerol dehydro  45.9      23 0.00058   16.1   8.7   39  218-256   289-330 (366)
124 PRK11063 metQ DL-methionine tr  45.6      23 0.00058   16.0   3.8  136   11-162    17-177 (271)
125 COG4607 CeuA ABC-type enteroch  45.5      23 0.00059   16.0  17.3  148  123-293   148-319 (320)
126 TIGR01825 gly_Cac_T_rel pyrido  45.3      23 0.00059   16.0   6.7  137   66-209   134-351 (392)
127 PRK12450 foldase protein PrsA;  45.3      19 0.00049   16.6   2.6   30    1-30      4-36  (309)
128 PRK13883 conjugal transfer pro  45.2      23 0.00059   16.0   3.1   18    1-18      1-18  (156)
129 PRK00042 tpiA triosephosphate   45.2      23 0.00059   16.0   7.7   59  184-258   160-228 (251)
130 PRK03095 prsA peptidylprolyl i  45.1      20 0.00052   16.4   2.7   57  199-260   209-266 (287)
131 KOG1405 consensus               45.0      23  0.0006   16.0   4.5   37  207-243   279-315 (484)
132 cd03809 GT1_mtfB_like This fam  44.7      24  0.0006   16.0   5.1   11   70-80    138-148 (365)
133 PRK07503 methionine gamma-lyas  44.6      24  0.0006   15.9   7.7   30  145-174   245-274 (403)
134 cd03825 GT1_wcfI_like This fam  44.5      24 0.00061   15.9   7.4   40   32-78     18-57  (365)
135 cd00316 Oxidoreductase_nitroge  44.2      24 0.00061   15.9  17.9  201   45-294   180-399 (399)
136 pfam04788 DUF620 Protein of un  43.7     4.7 0.00012   20.7  -0.7  103  127-248    70-183 (242)
137 COG0287 TyrA Prephenate dehydr  43.5      25 0.00063   15.8   5.5   75  174-251   105-181 (279)
138 COG3048 DsdA D-serine dehydrat  43.5      25 0.00063   15.8   5.2   85  171-272   253-338 (443)
139 cd03794 GT1_wbuB_like This fam  43.5      25 0.00063   15.8   7.6   19   33-51     20-38  (394)
140 TIGR01418 PEP_synth phosphoeno  43.3      13 0.00034   17.7   1.5   56   16-85    405-461 (877)
141 TIGR03431 PhnD phosphonate ABC  43.3      25 0.00063   15.8   5.8   75    1-83      1-91  (288)
142 PRK09590 celB cellobiose phosp  43.0      25 0.00064   15.8   3.1   50  217-266    34-85  (104)
143 PTZ00216 acyl-CoA synthetase;   42.5      25 0.00065   15.7   8.5   18   24-41    195-212 (700)
144 PRK08591 acetyl-CoA carboxylas  42.2      15 0.00039   17.2   1.7   15   68-83     70-84  (449)
145 KOG4549 consensus               42.1      26 0.00066   15.7   4.1   49  214-262    40-89  (144)
146 PRK10866 outer membrane protei  41.8      20  0.0005   16.5   2.2   39    1-40      4-42  (243)
147 TIGR02339 thermosome_arch ther  41.6      26 0.00067   15.6   4.1   50  220-271   269-337 (522)
148 PRK08861 cystathionine gamma-s  41.4      26 0.00067   15.6   7.7   31  145-175   232-262 (388)
149 PRK13602 putative ribosomal pr  41.1      27 0.00068   15.6   4.7   49  222-270    16-67  (82)
150 PRK05967 cystathionine beta-ly  40.2      28  0.0007   15.5   7.7   31  145-175   242-272 (392)
151 TIGR03088 stp2 sugar transfera  40.2      28  0.0007   15.5   5.7   49   29-80     38-89  (374)
152 KOG1185 consensus               39.3      28 0.00072   15.4   5.1   29   56-84    260-288 (571)
153 PRK12789 flgI flagellar basal   39.2      15 0.00039   17.3   1.3   39  129-172   195-250 (367)
154 PRK08751 putative long-chain f  38.8      25 0.00064   15.8   2.4   16   26-41    126-141 (560)
155 PRK13138 consensus              38.5      29 0.00075   15.3   5.5   94  192-293   169-263 (264)
156 cd03804 GT1_wbaZ_like This fam  38.2      30 0.00075   15.3   8.2   12   69-80    150-161 (351)
157 PRK11251 DNA-binding transcrip  38.1      30 0.00076   15.3   4.5   66    1-67      1-75  (109)
158 PRK08463 acetyl-CoA carboxylas  38.0      22 0.00057   16.1   2.0   10  279-288   438-447 (478)
159 PRK03002 prsA peptidylprolyl i  37.9      28 0.00073   15.4   2.5   17  244-260   253-269 (285)
160 TIGR01163 rpe ribulose-phospha  37.6      30 0.00077   15.2   6.5  138  127-283    60-213 (216)
161 PRK05613 O-acetylhomoserine am  37.6      30 0.00077   15.2   7.9   60  145-204   284-348 (437)
162 KOG0053 consensus               37.4      30 0.00077   15.2   9.3   71  129-199   240-316 (409)
163 PRK02261 methylaspartate mutas  37.3      30 0.00078   15.2   3.0   37  220-256    99-135 (137)
164 TIGR01245 trpD anthranilate ph  36.7      31 0.00079   15.1   2.6   49  223-272   132-181 (331)
165 PRK13861 type IV secretion sys  36.7      20 0.00052   16.4   1.6   22   42-65     60-81  (293)
166 PRK04792 tolB translocation pr  36.4      32  0.0008   15.1   2.7   30  129-158   157-186 (450)
167 PRK06683 hypothetical protein;  36.3      32 0.00081   15.1   4.9   49  222-270    16-67  (82)
168 pfam07383 DUF1496 Protein of u  36.3      29 0.00073   15.4   2.3   33    1-33      1-33  (88)
169 PRK02910 light-independent pro  36.2      32 0.00081   15.1  11.8  185   36-261   180-385 (524)
170 cd03796 GT1_PIG-A_like This fa  36.0      32 0.00081   15.1   7.8   19   33-51     20-38  (398)
171 PRK13859 type IV secretion sys  35.9      29 0.00073   15.4   2.3   13   56-68     32-44  (55)
172 PRK11557 putative DNA-binding   35.8      32 0.00082   15.1   7.8   73  182-262   131-212 (282)
173 TIGR00670 asp_carb_tr aspartat  35.3      33 0.00084   15.0   3.3   73   33-109    60-146 (336)
174 PRK00591 prfA peptide chain re  35.2      33 0.00084   15.0   9.7   95  122-217    24-160 (360)
175 cd02812 PcrB_like PcrB_like pr  35.1      33 0.00084   15.0   7.3   65  193-262   139-203 (219)
176 PRK10307 predicted glycosyl tr  35.0      33 0.00084   15.0  10.9   19   33-51     21-39  (415)
177 COG4126 Hydantoin racemase [Am  34.8      33 0.00085   15.0   4.3   61  198-260   141-201 (230)
178 TIGR00559 pdxJ pyridoxal phosp  34.8      33 0.00085   14.9   5.3   41  219-262   111-153 (265)
179 pfam00731 AIRC AIR carboxylase  34.7      33 0.00085   14.9   6.7   46  217-262    39-84  (150)
180 CHL00099 ilvB acetohydroxyacid  34.7      34 0.00085   14.9   5.5   24   63-86    271-294 (588)
181 COG0725 ModA ABC-type molybdat  34.5      34 0.00086   14.9   5.4   65   21-94     29-97  (258)
182 cd06350 PBP1_GPCR_family_C_lik  34.2      34 0.00087   14.9   6.9   20  218-237   202-221 (348)
183 COG4770 Acetyl/propionyl-CoA c  34.1      17 0.00043   16.9   0.9   17  186-202   430-446 (645)
184 PRK08316 acyl-CoA synthetase;   34.1      34 0.00087   14.9   7.5   16   24-39    109-124 (525)
185 pfam02153 PDH Prephenate dehyd  34.0      34 0.00088   14.9   5.2   82  168-251    80-168 (258)
186 TIGR00839 aspA aspartate ammon  33.9      13 0.00033   17.7   0.3  184   70-280    72-274 (469)
187 PTZ00008 (NAP-S) nucleosome as  33.8      35 0.00088   14.8   3.4   68  133-200    30-97  (288)
188 PRK07504 O-succinylhomoserine   33.6      35 0.00089   14.8   7.9   31  145-175   244-274 (397)
189 PRK10290 superoxide dismutase;  33.4      30 0.00075   15.3   2.0   21    1-21      1-21  (173)
190 PRK07050 cystathionine beta-ly  33.3      35  0.0009   14.8   7.4   85  145-231   244-335 (394)
191 TIGR02329 propionate_PrpR prop  33.3      35  0.0009   14.8   3.7   59  191-260   109-167 (658)
192 pfam08139 LPAM_1 Prokaryotic m  32.8      33 0.00085   14.9   2.2   20    1-20      1-20  (26)
193 TIGR01854 lipid_A_lpxH UDP-2,3  32.8      36 0.00092   14.7   4.7   47  214-260    48-96  (241)
194 COG5633 Predicted periplasmic   32.6      27 0.00069   15.6   1.7   22    1-22      1-22  (123)
195 TIGR01465 cobM_cbiF precorrin-  32.6      23  0.0006   16.0   1.4   39   62-104    14-53  (252)
196 PRK09028 cystathionine beta-ly  32.4      36 0.00093   14.7   7.4   31  145-175   239-269 (394)
197 cd04955 GT1_like_6 This family  32.4      36 0.00093   14.7   7.0   19   33-51     21-39  (363)
198 pfam02669 KdpC K+-transporting  32.3       6 0.00015   20.0  -1.7   98   49-150    53-153 (188)
199 pfam09403 FadA Adhesion protei  32.2      23  0.0006   16.0   1.3   16    1-16      1-16  (126)
200 cd02037 MRP-like MRP (Multiple  32.1      37 0.00094   14.7   4.9   69  197-267    86-169 (169)
201 TIGR00885 fucP L-fucose:H+ sym  32.0      14 0.00035   17.5   0.2   61   20-80    128-192 (427)
202 PRK04405 prsA peptidylprolyl i  32.0      33 0.00085   14.9   2.1   18  243-260   263-280 (298)
203 TIGR01437 selA_rel pyridoxal p  31.8      37 0.00095   14.6   4.8  135   30-177   168-311 (391)
204 cd01144 BtuF Cobalamin binding  31.5      38 0.00096   14.6  13.5  107  130-253    91-206 (245)
205 PTZ00151 translationally contr  31.5      38 0.00096   14.6   4.4   37  131-167    91-127 (173)
206 COG0041 PurE Phosphoribosylcar  31.3      38 0.00097   14.6   5.4   45  217-261    41-85  (162)
207 TIGR02992 ectoine_eutC ectoine  31.2      38 0.00097   14.6   2.7   64   67-147   189-252 (326)
208 TIGR03516 ppisom_GldI peptidyl  31.2      30 0.00077   15.2   1.8   21    1-21      1-21  (177)
209 TIGR01522 ATPase-IIA2_Ca calci  31.1      38 0.00097   14.5   6.2   90  159-260   454-543 (856)
210 PRK13280 N-glycosylase/DNA lya  30.8      39 0.00099   14.5   9.9  108  156-272   121-232 (265)
211 PRK05994 O-acetylhomoserine am  30.7      39 0.00099   14.5   7.7   30  146-175   275-304 (426)
212 KOG0256 consensus               30.6      39 0.00099   14.5   4.1   39  199-237   221-263 (471)
213 cd01966 Nitrogenase_NifN_1 Nit  30.0      40   0.001   14.4  14.7  147  128-293   256-416 (417)
214 cd01451 vWA_Magnesium_chelatas  30.0      40   0.001   14.4   5.8   52  215-269   114-168 (178)
215 COG3470 Tpd Uncharacterized pr  30.0      27 0.00068   15.6   1.3   73    1-77      3-75  (179)
216 cd02072 Glm_B12_BD B12 binding  29.4      41   0.001   14.4   2.8   35  217-251    92-126 (128)
217 PRK10449 heat-inducible protei  29.3      40   0.001   14.4   2.1   23    1-24      1-23  (140)
218 TIGR01826 CofD_related conserv  29.3      36 0.00091   14.7   1.9   60  219-278   177-241 (331)
219 PRK05445 hypothetical protein;  29.2      41   0.001   14.3   5.0   48  135-182     9-56  (166)
220 PHA00019 phage assembly protei  29.1      41  0.0011   14.3   4.0   42    1-42      1-42  (428)
221 PRK08507 prephenate dehydrogen  28.9      41  0.0011   14.3   3.2   66  186-251   108-178 (275)
222 PRK06882 acetolactate synthase  28.7      42  0.0011   14.3   7.0   64   21-86    206-286 (574)
223 PRK08249 cystathionine gamma-s  28.6      42  0.0011   14.3   8.6   30  145-174   242-271 (398)
224 COG2873 MET17 O-acetylhomoseri  28.5      42  0.0011   14.3   5.8  103  137-243   265-382 (426)
225 PRK06934 flavodoxin; Provision  28.3      43  0.0011   14.2   6.7   28   66-93     53-82  (221)
226 PRK08527 acetolactate synthase  28.2      43  0.0011   14.2  10.1  129   21-160   204-349 (560)
227 cd03818 GT1_ExpC_like This fam  28.2      43  0.0011   14.2   5.3   20   33-52     13-32  (396)
228 cd02767 MopB_ydeP The MopB_yde  28.1      43  0.0011   14.2   7.2  107   66-172   157-284 (574)
229 pfam00838 TCTP Translationally  28.0      43  0.0011   14.2   4.4   38  130-167    86-123 (166)
230 PRK09495 glnH glutamine ABC tr  28.0      43  0.0011   14.2   3.2   34    1-34      1-39  (247)
231 pfam06437 ISN1 IMP-specific 5'  27.7      21 0.00053   16.4   0.4   78  151-229   186-270 (404)
232 COG0149 TpiA Triosephosphate i  27.7      44  0.0011   14.2   8.2   94  171-286   146-248 (251)
233 PRK08045 cystathionine gamma-s  27.6      44  0.0011   14.2   7.8   50  145-194   231-280 (386)
234 TIGR01368 CPSaseIIsmall carbam  27.6      44  0.0011   14.1   3.9   49   44-93     80-130 (383)
235 pfam03652 UPF0081 Uncharacteri  27.5      44  0.0011   14.1   6.4   46  213-258    65-111 (134)
236 PRK06767 methionine gamma-lyas  27.5      44  0.0011   14.1   7.9   57  145-201   240-296 (386)
237 PRK11572 copper homeostasis pr  27.5      44  0.0011   14.1   7.1   69  188-260   118-195 (248)
238 TIGR01405 polC_Gram_pos DNA po  27.3      43  0.0011   14.2   2.0   73   22-94    233-308 (1264)
239 pfam07225 NDUF_B4 NADH-ubiquin  27.2      30 0.00076   15.3   1.2   21   51-71     10-30  (125)
240 PRK09934 putative fimbrial pro  27.0      42  0.0011   14.3   1.9   18    1-18      1-18  (171)
241 TIGR02747 TraV type IV conjuga  27.0      39 0.00099   14.5   1.7   18    1-18      1-20  (174)
242 PRK12999 pyruvate carboxylase;  26.9      31  0.0008   15.1   1.2   30  201-232   704-733 (1147)
243 pfam08123 DOT1 Histone methyla  26.8      45  0.0012   14.1   4.3   23   85-107    29-53  (205)
244 cd01418 Ribosomal_L19e_A Ribos  26.7      34 0.00087   14.9   1.4   19  125-143    18-36  (145)
245 pfam07437 YfaZ YfaZ precursor.  26.6      38 0.00097   14.6   1.6   42    1-54      1-42  (180)
246 PRK05968 hypothetical protein;  26.4      46  0.0012   14.0   8.6   30  145-174   241-270 (389)
247 pfam10933 DUF2827 Protein of u  26.4      46  0.0012   14.0   3.6   68   63-135    66-142 (364)
248 pfam01497 Peripla_BP_2 Peripla  26.4      46  0.0012   14.0  15.0  110  128-253    93-214 (236)
249 COG0626 MetC Cystathionine bet  26.3      46  0.0012   14.0   9.1   81  145-230   244-331 (396)
250 PRK08655 prephenate dehydrogen  26.2      46  0.0012   14.0   4.6   37  215-252   343-382 (441)
251 PRK04043 tolB translocation pr  26.1      46  0.0012   14.0   2.5   76    1-79      1-93  (419)
252 pfam00875 DNA_photolyase DNA p  26.0      47  0.0012   14.0   6.8   18  222-239   106-123 (164)
253 PRK07671 cystathionine beta-ly  25.9      47  0.0012   14.0   8.1   55  140-194   222-277 (377)
254 KOG2847 consensus               25.9      41  0.0011   14.3   1.7   57   83-150    54-111 (286)
255 PRK06702 O-acetylhomoserine am  25.9      47  0.0012   13.9   6.6   29  146-174   273-301 (432)
256 PRK08247 cystathionine gamma-s  25.8      47  0.0012   13.9   5.7   50  145-194   230-279 (366)
257 TIGR00972 3a0107s01c2 phosphat  25.4      47  0.0012   13.9   1.9  135  134-280    96-244 (248)
258 cd00617 Tnase_like Tryptophana  25.4      48  0.0012   13.9   3.6  134  128-262   170-359 (431)
259 PRK08570 rpl19e 50S ribosomal   25.3      39 0.00098   14.5   1.5   19  125-143    21-39  (150)
260 pfam07901 DUF1672 Protein of u  25.3      48  0.0012   13.9   2.1   19    1-19      1-19  (304)
261 COG2344 AT-rich DNA-binding pr  25.3      48  0.0012   13.9   4.5   92  166-260    68-174 (211)
262 cd00481 Ribosomal_L19e Ribosom  25.2      46  0.0012   14.0   1.8   19  125-143    18-36  (145)
263 COG0474 MgtA Cation transport   25.2      48  0.0012   13.9   7.8  115  130-260   474-589 (917)
264 PTZ00097 60S ribosomal protein  25.2      47  0.0012   14.0   1.9   17   62-78     34-50  (175)
265 pfam08981 consensus             25.1      48  0.0012   13.9   6.0   14  225-238    74-87  (181)
266 PRK12698 flgH flagellar basal   25.1      48  0.0012   13.9   2.5   22    1-23      1-22  (224)
267 pfam05540 Serpulina_VSP Serpul  25.1      38 0.00098   14.5   1.4   19    1-19      1-19  (377)
268 PRK10517 magnesium-transportin  24.5      50  0.0013   13.8   7.3   60  199-262   533-592 (900)
269 pfam01280 Ribosomal_L19e Ribos  24.3      49  0.0012   13.8   1.8   19  125-143    20-38  (148)
270 PRK10877 thiol:disulfide inter  24.3      50  0.0013   13.8   1.9   42    1-52      1-42  (232)
271 cd01417 Ribosomal_L19e_E Ribos  24.2      48  0.0012   13.9   1.8   16  126-141    19-34  (164)
272 PRK03757 hypothetical protein;  24.2      50  0.0013   13.7   2.2   18    1-18      1-18  (191)
273 pfam09748 Med10 Transcription   24.0      51  0.0013   13.7   3.7   39  118-156    64-118 (120)
274 TIGR03449 mycothiol_MshA UDP-N  23.9      51  0.0013   13.7   9.0   20   32-51     25-44  (405)
275 PRK12407 flgH flagellar basal   23.9      51  0.0013   13.7   1.9   20    2-21      1-20  (220)
276 cd04299 GT1_Glycogen_Phosphory  23.8      51  0.0013   13.7   2.0   42  211-253   522-565 (778)
277 PRK10598 hypothetical protein;  23.7      51  0.0013   13.7   2.5   20    1-20      1-21  (186)
278 CHL00200 trpA tryptophan synth  23.5      52  0.0013   13.7   7.5   75  217-293   185-261 (263)
279 PRK13237 tyrosine phenol-lyase  23.3      52  0.0013   13.6   3.6  133  128-262   195-384 (459)
280 TIGR00877 purD phosphoribosyla  23.2      52  0.0013   13.6   4.0   70  197-270    87-158 (459)
281 PRK01742 tolB translocation pr  23.1      53  0.0013   13.6   2.5   29  130-158   142-170 (430)
282 TIGR00020 prfB peptide chain r  23.1      53  0.0013   13.6   4.1   22  120-141    40-61  (373)
283 PRK08633 2-acyl-glycerophospho  23.0      53  0.0013   13.6   4.6   87  190-281  1035-1141(1150)
284 PRK06466 acetolactate synthase  22.9      53  0.0014   13.6   7.6   64   21-86    206-286 (574)
285 PRK00109 Holliday junction res  22.9      53  0.0014   13.6   6.4   45  214-258    69-114 (141)
286 PRK13122 consensus              22.8      53  0.0014   13.6   7.2   37  219-255   171-208 (242)
287 TIGR02171 Fb_sc_TIGR02171 Fibr  22.7      54  0.0014   13.6   2.3  143  137-290   789-963 (982)
288 TIGR02475 CobW cobalamin biosy  22.6      39 0.00099   14.5   1.0   44   61-106   176-219 (349)
289 PRK13135 consensus              22.6      54  0.0014   13.5   7.5   47  210-256   180-227 (267)
290 PRK10159 outer membrane phosph  22.5      54  0.0014   13.5   2.0   20    1-20      1-20  (351)
291 COG4047 Uncharacterized protei  22.5      54  0.0014   13.5  11.7  125  129-270    89-213 (243)
292 TIGR01917 gly_red_sel_B glycin  22.5      54  0.0014   13.5   2.6  107   30-142   185-294 (431)
293 PRK03629 tolB translocation pr  22.4      54  0.0014   13.5   2.6   29  129-157   137-165 (430)
294 COG0854 PdxJ Pyridoxal phospha  22.3      55  0.0014   13.5   5.4   42  219-263   110-152 (243)
295 cd01453 vWA_transcription_fact  22.2      55  0.0014   13.5   5.9   44  219-262   122-165 (183)
296 COG2241 CobL Precorrin-6B meth  22.2      55  0.0014   13.5   5.1  160   61-273    14-181 (210)
297 pfam04273 DUF442 Putative phos  22.1      55  0.0014   13.5   4.8   42  215-260    13-61  (110)
298 PRK10027 cryptic adenine deami  22.0      40   0.001   14.4   1.0   47   34-80    132-184 (588)
299 TIGR03302 OM_YfiO outer membra  22.0      55  0.0014   13.5   2.6   40  124-166   122-161 (235)
300 TIGR01457 HAD-SF-IIA-hyp2 HAD-  22.0      55  0.0014   13.5   4.0  121  124-260    35-176 (251)
301 PRK09304 arginine exporter pro  21.9      28 0.00072   15.4   0.2   12  122-133   107-118 (197)
302 PRK13117 consensus              21.8      56  0.0014   13.4  10.4   36  221-256   135-171 (268)
303 PRK13121 consensus              21.6      56  0.0014   13.4   7.7  150  123-293   104-263 (265)
304 COG1535 EntB Isochorismate hyd  21.6      56  0.0014   13.4   3.3   49  184-239    29-77  (218)
305 COG3275 LytS Putative regulato  21.6      56  0.0014   13.4   2.9   57   25-81    223-288 (557)
306 KOG4358 consensus               21.3      55  0.0014   13.5   1.6   46   24-69    301-356 (584)
307 TIGR02733 desat_CrtD C-3',4' d  21.2      43  0.0011   14.2   1.0   24  215-238   227-251 (499)
308 TIGR03519 Bac_Flav_fam_1 Bacte  21.2      50  0.0013   13.8   1.4   16    1-16      1-16  (292)
309 PRK09967 putative outer membra  21.1      58  0.0015   13.3   2.2   20    1-20      1-21  (160)
310 pfam03932 CutC CutC family. Co  21.1      58  0.0015   13.3   8.4   70  188-259   117-195 (202)
311 KOG2183 consensus               21.0      58  0.0015   13.3   2.1   14   73-86     81-96  (492)
312 TIGR01263 4HPPD 4-hydroxypheny  20.9      48  0.0012   13.9   1.2   69  213-292   232-303 (379)
313 PRK01122 potassium-transportin  20.9      58  0.0015   13.3   6.1   53  202-258   438-490 (684)
314 cd02066 GRX_family Glutaredoxi  20.8      58  0.0015   13.3   4.6   58  221-283    12-69  (72)
315 TIGR02045 P_fruct_ADP ADP-spec  20.8      50  0.0013   13.8   1.3   33  116-148    72-104 (466)
316 pfam07269 consensus             20.7      59  0.0015   13.3   2.0   16    1-16      1-16  (55)
317 pfam05643 DUF799 Putative bact  20.6      59  0.0015   13.3   2.4   80    1-80      1-113 (215)
318 PRK05589 peptide chain release  20.4      60  0.0015   13.2   4.4   17  188-204   142-158 (325)
319 TIGR01348 PDHac_trf_long pyruv  20.3      60  0.0015   13.2   2.8   52  184-235   337-388 (655)
320 KOG1538 consensus               20.3      30 0.00076   15.3   0.1   98  124-233   728-825 (1081)
321 PRK13238 tnaA tryptophanase; P  20.1      60  0.0015   13.2   3.6  134  128-262   195-385 (461)
322 PRK08475 F0F1 ATP synthase sub  20.1      60  0.0015   13.2   2.2   16  160-175    79-94  (170)
323 pfam03255 ACCA Acetyl co-enzym  20.1      37 0.00094   14.7   0.5  100  155-258    30-129 (145)
324 pfam05913 DUF871 Bacterial pro  20.1      61  0.0015   13.2   5.1   74  186-259   137-239 (357)

No 1  
>cd01137 PsaA Metal binding protein PsaA.  These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00  E-value=0  Score=522.88  Aligned_cols=276  Identities=43%  Similarity=0.708  Sum_probs=263.4

Q ss_pred             CCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf             64335882899975289999998518914899962688980120227124577603789999887610689999974235
Q gi|254780537|r   17 ASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKK   96 (294)
Q Consensus        17 ~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~   96 (294)
                      .+++++|++||||++|+++||++|+||+++|++|+|+|.|||+|||+|+|+++|++|||||+||.+||+|+.+++++..+
T Consensus        11 ~~~~~~k~~Vvtt~~pl~~~v~~I~Gd~v~V~~Lvp~g~dPH~yep~p~d~~~l~~Adliv~~G~~lE~~~~k~~~~~~~   90 (287)
T cd01137          11 PATAASKLKVVATFSILADIARNIAGDRVNVTSIVPPGADPHEYEPTPSDIKKLSKADLILYNGLNLEPWLERLVKNAGK   90 (287)
T ss_pred             CCCCCCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCC
T ss_conf             75458996699987699999999818845999821879897568899999999957999998588741789999996066


Q ss_pred             CCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             57521112374202221001233463011122135678999999999864318889999998998630145533789988
Q gi|254780537|r   97 GTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTR  176 (294)
Q Consensus        97 ~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~  176 (294)
                      +.+++.++++++.+...+ +++|++.|||+||||.|++.++++|+++|+++||+|+++|++|+++|.++|++|+++++..
T Consensus        91 ~~~~v~~~~~i~~~~~~~-~~~~~~~DPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~Ld~~~~~~  169 (287)
T cd01137          91 DVPVVAVSEGIDPIPLEE-GHYKGKPDPHAWMSPKNAIIYVKNIAKALSEADPANAETYQKNAAAYKAKLKALDEWAKAK  169 (287)
T ss_pred             CCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             898895358843104556-6788999986357999999999999999998682122899999999999999999999999


Q ss_pred             HHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             63078447369982665214577529728872268864000789999999762016971899827899799999999829
Q gi|254780537|r  177 IEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETN  256 (294)
Q Consensus       177 ~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~  256 (294)
                      ++++|..+|.|+++|++|+||+++|||++.++.+++++.||||++|+++++.||+++|+|||+|++++++.+++||+++|
T Consensus       170 l~~vp~~~~~~vt~H~af~Yfa~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~i~~if~E~~~~~k~a~~ia~e~g  249 (287)
T cd01137         170 FATIPAEKRKLVTSEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKETG  249 (287)
T ss_pred             HHCCCCCCCEEEEECCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC
T ss_conf             72487435557851741689998679917764412786666999999999999852997899858999099999999729


Q ss_pred             CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             9344432012378777886899999999999998620
Q gi|254780537|r  257 ASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       257 ~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      +++..++++|+++..+++++||++||++|+++|.+||
T Consensus       250 ~~v~~~l~~d~l~~~~~~~~tY~~~m~~N~~~l~~aL  286 (287)
T cd01137         250 AKIGGQLYTDSLSEKGGPADTYLDMMEHNLDTIVEGL  286 (287)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             9714625655678889983759999999999999864


No 2  
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species.  The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00  E-value=0  Score=505.56  Aligned_cols=270  Identities=26%  Similarity=0.428  Sum_probs=252.5

Q ss_pred             CCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             82899975289999998518914899962688980120227124577603789999887610689999974235575211
Q gi|254780537|r   23 KKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIIT  102 (294)
Q Consensus        23 ~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~  102 (294)
                      ||+||||++||++||++|+||+++|++|+|+|.|||+|||+|+|+++|++|||||+||.+||+|+.+++.+...+..++.
T Consensus         1 kP~Vvtt~~pl~~iv~~I~Gd~v~V~~lv~~g~dPH~yep~p~d~~~l~~ADlii~~G~~lE~~~~~~~~~~~~~~~v~~   80 (276)
T cd01016           1 KPNVVTTTGMIADAVENIGGDHVEVTGLMGPGVDPHLYKATAGDVEKLQNADVVFYNGLHLEGKMSDVLSKLGSSKSVIA   80 (276)
T ss_pred             CCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf             99899968099999999808816999802889896468799999999967999998488631789999985458984797


Q ss_pred             CCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             12374202221001233463011122135678999999999864318889999998998630145533789988630784
Q gi|254780537|r  103 VTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDP  182 (294)
Q Consensus       103 ~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~  182 (294)
                      +++++...... +.++++++|||+||||.|++.++++|++.|+++||+|+++|++|+++|.++|++|+.+++..++.+|.
T Consensus        81 ~~~~~~~~~~~-~~~~~~~~DPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~Ld~~~~~~l~~~p~  159 (276)
T cd01016          81 LEDTLDRSQLI-LDEEEGTYDPHIWFDVKLWKYAVKAVAEVLSEKLPEHKDEFQANSEAYVEELDSLDAYAKKKIAEIPE  159 (276)
T ss_pred             EECCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             02466744456-55568999986447999999999999999998683128999999999999999999999998622555


Q ss_pred             CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE--
Q ss_conf             473699826652145775297288722688640007899999997620169718998278997999999998299344--
Q gi|254780537|r  183 EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG--  260 (294)
Q Consensus       183 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~--  260 (294)
                      ++|.|||+|+||+||+++|||+++++.+++++.||||++|+++++.||+++|++||+|++++++.+++|+++++++..  
T Consensus       160 ~~r~~vt~H~Af~Yfa~~ygl~~~~~~~~~~~~epsp~~l~~li~~ik~~~v~~If~E~~~~~k~~~~i~~~~~a~~~~~  239 (276)
T cd01016         160 QQRVLVTAHDAFGYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVERKIKAIFVESSVNQKSIEALQDAVKARGHDV  239 (276)
T ss_pred             CCEEEEEECCCHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEE
T ss_conf             56089984640677998669827314246888888979999999999983999999848999599999999983357424


Q ss_pred             ---EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             ---432012378777886899999999999998620
Q gi|254780537|r  261 ---GVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       261 ---~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                         ..++.|++++.+.+++||++|||+|+++|++||
T Consensus       240 ~~~~~l~~d~~~~~~~~~~tY~~~M~~N~~~l~eaL  275 (276)
T cd01016         240 QIGGELYSDAMGEEGTSEGTYIGMFKHNVDTIVEAL  275 (276)
T ss_pred             EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             316712323678889987778999999999999972


No 3  
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=100.00  E-value=0  Score=501.04  Aligned_cols=286  Identities=18%  Similarity=0.303  Sum_probs=256.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECC
Q ss_conf             26999999999860464335882899975289999998518914899962688980120227124577603789999887
Q gi|254780537|r    2 LRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGL   81 (294)
Q Consensus         2 ~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~   81 (294)
                      ||+|+.+.++.++.++.+.+.+++|||||+|+++||++||||+++|++|+|+|+|||+|+|+|+|+++|++||+|||||.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~ak~~Vvtsi~Pl~~l~~~I~gd~~~V~~Lvp~g~dPH~yep~Psd~~~l~~ADli~~~G~   80 (308)
T PRK09545          1 KKTLLFAALSAALWGGATQAANAAVVASIKPLGFIASAIADGVTETEVLLPDGASPHDYSLRPSDVKRLQSADLVVWVGP   80 (308)
T ss_pred             CCCHHHHHHHHHHHCCCHHCCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECC
T ss_conf             90449999999996550013898399987689999999848972799812899897467689999999860999999586


Q ss_pred             CCCHHHHHHHHHCCCCCCCCCCCC--CCCHHH------------------HHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             610689999974235575211123--742022------------------210012334630111221356789999999
Q gi|254780537|r   82 HLEETYMKYFTNLKKGTKIITVTD--GINPIG------------------VSEDTSVDSEPNPHAWMSLTNAMIYIENIR  141 (294)
Q Consensus        82 ~~E~~~~~~~~~~~~~~~~i~~~~--~i~~~~------------------~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~  141 (294)
                      +||+|+.+.+.+.... +++.+++  ++..+.                  ..+++|+|++.|||+||||.|++.++++|+
T Consensus        81 ~lE~~l~k~l~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~h~hg~~DPH~WldP~na~~~a~~I~  159 (308)
T PRK09545         81 EMEAFLEKPVSKLPEN-KQVTIAQLPDVKPLLMKSAHHDEDEDDHDHAAEKHDEDHHHGDYNMHLWLSPEIARATAVAIH  159 (308)
T ss_pred             CHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             5677899999736657-806998227854233345456555555554445567655569999714479999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHH
Q ss_conf             99864318889999998998630145533789988630784473699826652145775297288722688640007899
Q gi|254780537|r  142 KALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSM  221 (294)
Q Consensus       142 ~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~  221 (294)
                      ++|+++||+|+++|++|+++|.++|++|+.++++.++  |.++|.|+++|+||+||+++|||+++++.+.+++.+|||++
T Consensus       160 ~~L~~~dP~~~~~y~~N~~~~~~~L~~ld~~~~~~la--~~~~r~~v~~HdAf~Yfa~~ygL~~~~~~~~~~e~~Ps~~~  237 (308)
T PRK09545        160 DKLVELMPQSKAKLDANLKDFEAQLAATDKQIGNQLA--PVKGKGYFVFHDAYGYFEKHYGLTPLGHFTVNPEIQPGAQR  237 (308)
T ss_pred             HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCHHH
T ss_conf             9999868451799999999999999999999999725--77788699977207999998699387887128776789999


Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHC
Q ss_conf             9999976201697189982789979999999982993444320123787778-86899999999999998620
Q gi|254780537|r  222 MRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDG-PAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       222 l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~-~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      |+++++.||+++|+|||.|++++++.+++||+++|++++.   +|+|+.... ..++|+++|+.+.++++.||
T Consensus       238 l~~l~~~ik~~~v~~If~Ep~~~~k~~~~ia~~~g~kv~~---lDpLg~~~~~~~~~Y~~~m~~~~~~~~~CL  307 (308)
T PRK09545        238 LHEIRTQLVEHKATCVFAEPQFRPAVIESVAKGTSVRMGT---LDPLGTNIKLGKTSYSNFLSQLANQYASCL  307 (308)
T ss_pred             HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCEEEE---ECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999998399799965999949999999865985999---678755688881179999999999999973


No 4  
>cd01017 AdcA Metal binding protein AcdA.  These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion.  The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains.  In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00  E-value=0  Score=490.06  Aligned_cols=271  Identities=27%  Similarity=0.459  Sum_probs=249.0

Q ss_pred             CCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC-CCCC
Q ss_conf             588289997528999999851891489996268898012022712457760378999988761068999997423-5575
Q gi|254780537|r   21 TQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLK-KGTK   99 (294)
Q Consensus        21 ~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~-~~~~   99 (294)
                      ++|++||||++|++++|++||||.++|++|+|+|.|||+|+|+|+|+++|++|||||+||.+||+|+.+++.+.. ++..
T Consensus         1 sgki~Vv~S~~p~~~lv~~I~Gd~v~V~~lv~~g~dPH~yep~p~d~~~l~~Adli~~nG~~lE~~l~~~~~~~~~~~~~   80 (282)
T cd01017           1 SGKLKVVTTFYPLYEFTKAIGGDKADVKLIIPAGTEPHDFEPSPKDIARIADADVFVYNGLGMETWAEKVLKSLQNKKLK   80 (282)
T ss_pred             CCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCE
T ss_conf             99828999888999999998199448998159897963675899999999669999991878368999999853689977


Q ss_pred             CCCCCCCCCHHHHH--------HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             21112374202221--------0012334630111221356789999999998643188899999989986301455337
Q gi|254780537|r  100 IITVTDGINPIGVS--------EDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSIL  171 (294)
Q Consensus       100 ~i~~~~~i~~~~~~--------~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~  171 (294)
                      ++++++++..+...        +++|+|++.|||+||||.|++.++++|+++|+++||+|+++|++|+++|.++|++|++
T Consensus        81 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~  160 (282)
T cd01017          81 VVEASKGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWLSPVLAIQQVENIKDALIKLDPDNKEYYEKNAAAYAKKLEALDQ  160 (282)
T ss_pred             EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99877895235567765555555445579999825578155999999999999986844179999999999999999999


Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             89988630784473699826652145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r  172 PLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV  251 (294)
Q Consensus       172 ~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i  251 (294)
                      +++..++.+  ++|.|+++|++|+||+++|||++.++.+++++.+|||++|+++++.||+++|+|||+|++++++.+++|
T Consensus       161 ~~~~~l~~~--~~~~~v~~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~i  238 (282)
T cd01017         161 EYRAKLAKA--KGKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETL  238 (282)
T ss_pred             HHHHHHHCC--CCCCEEEECCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf             999987443--678568735337899986698486543348888999999999999999859989998189990999999


Q ss_pred             HHHHCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHC
Q ss_conf             998299344432012378777-886899999999999998620
Q gi|254780537|r  252 AYETNASYGGVLYVDSLSKPD-GPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       252 a~e~~~~~~~~~~~d~l~~~~-~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      ++++|++++.+.++++++.+. ..+.||++||++|+++|++||
T Consensus       239 a~e~g~~v~~l~pl~~~~~~~~~~~~~Y~~~m~~N~~~i~~aL  281 (282)
T cd01017         239 AKETGAKLLVLNPLETLTKEEIDDGKDYFSLMKENLETLKRAL  281 (282)
T ss_pred             HHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             9981996785447666652348873669999999999999970


No 5  
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+.  They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism.  They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00  E-value=0  Score=486.92  Aligned_cols=267  Identities=24%  Similarity=0.371  Sum_probs=236.5

Q ss_pred             CCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf             58828999752899999985189148999626889801202271245776037899998876106899999742355752
Q gi|254780537|r   21 TQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKI  100 (294)
Q Consensus        21 ~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~  100 (294)
                      +.|++||||++|+++||++|+||+++|++|+|+|+|||+|||+|+|+++|++||||||||.+||+|+.+++.+..+ .++
T Consensus         1 aak~~Vvts~~pl~~i~~~I~Gd~v~V~~L~p~g~dpH~yep~p~d~~~l~~Adliv~~G~~lE~wl~k~~~~~~~-~~~   79 (286)
T cd01019           1 AAEASVLTSIKPLGFIAAAIMGGVGEVEVLVPPGASPHDYELRPSDARKLQEADLVVWIGPDLEAFLDKVLQGRKK-GKV   79 (286)
T ss_pred             CCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCC-CCE
T ss_conf             9998799987799999999828953799805999897367689999999966999999699724689999974778-883


Q ss_pred             CCCCCCCCH--HH----------------HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             111237420--22----------------210012334630111221356789999999998643188899999989986
Q gi|254780537|r  101 ITVTDGINP--IG----------------VSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREY  162 (294)
Q Consensus       101 i~~~~~i~~--~~----------------~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~  162 (294)
                      +.++++...  ..                ..+++|+|++.|||+||||.|++.++++|+++|+++||+|+++|++|+++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~DPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~  159 (286)
T cd01019          80 LTLAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEEGGLDPHLWLSPENAAEVAQAVAEKLSALDPDNAATYAANLEAF  159 (286)
T ss_pred             EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf             78533556554334443455455555555654445568999816348477999999999999886822099999999999


Q ss_pred             HCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             30145533789988630784473699826652145775297288722688640007899999997620169718998278
Q gi|254780537|r  163 SEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSEST  242 (294)
Q Consensus       163 ~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~  242 (294)
                      .++|++|+.+++.+++.+  ++|.|+++|++|+||+++|||+++++.+.+++.+|||++|+++++.||+++|+|||+|++
T Consensus       160 ~~~L~~l~~~~~~~l~~~--~~~~~v~~H~af~Yfa~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~  237 (286)
T cd01019         160 NARLAELDATIKERLAPV--KTKPFFVFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQ  237 (286)
T ss_pred             HHHHHHHHHHHHHHHCCC--CCCEEEEECCCHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             999999999999974455--652289856636899986698386787224677899999999999999839988998289


Q ss_pred             CCHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHC
Q ss_conf             997999999998299344432012378777-886899999999999998620
Q gi|254780537|r  243 NSDQPAKQVAYETNASYGGVLYVDSLSKPD-GPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       243 ~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~-~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      ++++.+++||+++|++++.   +|+|+... ..+++|++||+.|+++|++||
T Consensus       238 ~~~k~a~~ia~e~g~~v~~---ld~l~~~~~~~~~~Y~~~m~~n~~~i~~aL  286 (286)
T cd01019         238 FHPKIAETLAEGTGAKVGE---LDPLGGLIELGKNSYVNFLRNLADSLASCL  286 (286)
T ss_pred             CCHHHHHHHHHHCCCCEEE---ECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf             8939999999971993899---637767788874069999999999999769


No 6  
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=100.00  E-value=0  Score=473.63  Aligned_cols=270  Identities=37%  Similarity=0.578  Sum_probs=258.1

Q ss_pred             CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC-CCC
Q ss_conf             8828999752899999985189148999626889801202271245776037899998876106899999742355-752
Q gi|254780537|r   22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKG-TKI  100 (294)
Q Consensus        22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~-~~~  100 (294)
                      ++++||||++|+++++++|+||+++|.+|+|+|.|||+|||+|+|++++++||+|||||.+||+|+.+++.+..+. ..+
T Consensus        31 ~~~~Vvtt~~~~~d~~~~I~gd~~~V~~iv~~g~dpH~yepsp~di~~i~~ADliv~nG~~le~w~~k~~~~~~~~~~~~  110 (303)
T COG0803          31 AKLKVVTTFPPIADVVKNIAGDKVDVVSLVPPGADPHSYEPTPSDIAKLRKADLIVYNGLGLEPWLEKLLESADKKKVLV  110 (303)
T ss_pred             CCCEEEEECHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCCCEE
T ss_conf             78769997667999999970886028984289999706889989999987499999848865778999998467877516


Q ss_pred             CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf             11123742022210012334630111221356789999999998643188899999989986301455337899886307
Q gi|254780537|r  101 ITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKV  180 (294)
Q Consensus       101 i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~  180 (294)
                      +.+++++.++...++. .++..|||+|+||.|++.++++|+++|+++||+|++.|++|+++|.++|++|+.+++.+++.+
T Consensus       111 i~~s~~i~~~~~~~~~-~~g~~dpH~Wldp~na~~~v~~I~~~L~~~dP~~~~~y~~N~~~y~~kL~~l~~~~~~~~~~~  189 (303)
T COG0803         111 IEVSDGIELLPLPGEE-EEGVNDPHVWLDPKNAKIYAENIADALVELDPENKETYEKNAEAYLKKLNKLDEEAKAKLSKI  189 (303)
T ss_pred             EECCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             8714770345678744-468999982048999999999999999886941389999999999999999999999998447


Q ss_pred             CCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf             84473699826652145775297288722688640007899999997620169718998278997999999998299344
Q gi|254780537|r  181 DPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG  260 (294)
Q Consensus       181 p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~  260 (294)
                      |. +|.|||+|++|+||+++||+++.++.+.+++.||||+++++++++||++++++||.|.+.+++.+++|++++|+++.
T Consensus       190 ~~-~r~~vt~h~af~Y~~~~~g~~~~~i~~~~~~~e~s~~~l~~l~~~ik~~~i~~If~e~~~~~~~~~~la~e~g~~~~  268 (303)
T COG0803         190 PA-QRDVVTSHGAFGYLARDYGLKQVAIAGISPEAEPSPKDLAKLVDLIKKKNIKAIFVESNVSSKSAETLAKETGVKIL  268 (303)
T ss_pred             CC-CCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf             64-66499863720654510598512203658556999999999999998569978998188882799999998598602


Q ss_pred             EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             432012378777886899999999999998620
Q gi|254780537|r  261 GVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       261 ~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      .++++|+++.++.++++|+++|+.|+++|.++|
T Consensus       269 ~~~~~d~~~~~~~~~~~y~~~~~~n~~~i~~~l  301 (303)
T COG0803         269 GLLYLDSLGDKDSKGDTYISMMKANLDTIVEGL  301 (303)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             100223445678764528999999999999863


No 7  
>pfam01297 SBP_bac_9 Periplasmic solute binding protein family. This family includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum.
Probab=100.00  E-value=0  Score=457.75  Aligned_cols=263  Identities=31%  Similarity=0.513  Sum_probs=244.7

Q ss_pred             EEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             99975289999998518914899962688980120227124577603789999887610689999974235575211123
Q gi|254780537|r   26 VLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTD  105 (294)
Q Consensus        26 Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~  105 (294)
                      ||||++||+++|++|+||+++|++|+|+|.|||+|+|+|+|+++|++||+||+||.+||+|+.+++.....+.+++.+++
T Consensus         1 Vv~t~~pl~~iv~~i~gd~~~V~~l~~~g~dpH~y~~~p~d~~~l~~ADlii~~G~~~E~~l~~~~~~~~~~~~~v~~~~   80 (272)
T pfam01297         1 VVASIPPLADLVKAIGGDKVEVTSLVPPGADPHTYEPTPSDIKKLAKADLVVYNGAGLEPWLDKLLASLANKVKVVDLSE   80 (272)
T ss_pred             CEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCEEEECCC
T ss_conf             98965799999999808934899806999796577689999999956999999298716789999985689984898357


Q ss_pred             CCCHHHHH--------HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             74202221--------0012334630111221356789999999998643188899999989986301455337899886
Q gi|254780537|r  106 GINPIGVS--------EDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRI  177 (294)
Q Consensus       106 ~i~~~~~~--------~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~  177 (294)
                      ++......        +++++|++.|||+|+||.|++.++++|++.|+++||+++++|++|+++|.++|++++.+++..+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l  160 (272)
T pfam01297        81 GIELLDAPGHEHDHDEHDHDDHGHGDPHIWLDPKNAKAMAEAIADALSELDPENAATYEKNAAAFLKKLDELDAEIKAKL  160 (272)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             86555576545655555555678999806268277999999999999986854089999999999999999999999875


Q ss_pred             HCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             30784473699826652145775297288722688640007899999997620169718998278997999999998299
Q gi|254780537|r  178 EKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNA  257 (294)
Q Consensus       178 ~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~  257 (294)
                      +.++  ++.|+++|++|+||+++|||+++++.+.+++.+||++++.++++.+|+++|+|||+|++++++.++.|++++|+
T Consensus       161 ~~~~--~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~  238 (272)
T pfam01297       161 APIP--GKRVITFHDAFGYFAKAYGLEQIAILGESPESEPSPADLAELIKLIKEHNVKVIFVEPQFSPKLAETLAEETGA  238 (272)
T ss_pred             HCCC--CCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCC
T ss_conf             1347--64389855506999997799275403003567889999999999999849989998389990999999999699


Q ss_pred             CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             344432012378777886899999999999998620
Q gi|254780537|r  258 SYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       258 ~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      ++. .+++|+++.++  +.+|++||+.|+++|.+||
T Consensus       239 ~~~-~~~~d~l~~~~--~~~Y~~~m~~n~~~l~~al  271 (272)
T pfam01297       239 KVV-PLYLDPLGSEG--GDTYLELMRHNLDTLAEAL  271 (272)
T ss_pred             CEE-EEECCCCCCCC--CCCHHHHHHHHHHHHHHHC
T ss_conf             768-87357888888--4779999999999999864


No 8  
>cd01020 TroA_b Metal binding protein TroA_b.  These proteins are predicted to function as initial receptors in ABC transport of metal ions.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00  E-value=0  Score=457.77  Aligned_cols=255  Identities=20%  Similarity=0.326  Sum_probs=221.8

Q ss_pred             CCCEEEEECHHHHHHHHHHCCCEEEEEEEE-CCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf             882899975289999998518914899962-6889801202271245776037899998876106899999742355752
Q gi|254780537|r   22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLV-EAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKI  100 (294)
Q Consensus        22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li-~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~  100 (294)
                      +|++||||++||+|+|++||||+++|++|+ |||+|||+|||+|+|+++|++|||||+||.+||+|+.+++.+... . .
T Consensus         1 gkl~Vvat~~~l~dl~~~I~Gd~v~V~~li~~p~~dPH~yep~p~d~~~l~~Adlvv~nG~~lE~wl~k~~~~~~~-~-~   78 (264)
T cd01020           1 GKINVVASTNFWGSVAEAVGGDHVEVTSIITNPDVDPHDFEPTPTDAAKVSTADIVVYNGGGYDPWMTKLLADTKD-V-I   78 (264)
T ss_pred             CCCEEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCC-C-E
T ss_conf             9737999771999999998288169999447999896568799999999962989999588816899999852899-6-6


Q ss_pred             CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf             11123742022210012334630111221356789999999998643188899999989986301455337899886307
Q gi|254780537|r  101 ITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKV  180 (294)
Q Consensus       101 i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~  180 (294)
                      +...+       ...++.|++.|||+||||.|++.++++|++.|+++||+|+++|++|+++|.++|++|+.++++.++. 
T Consensus        79 ~~~~~-------~~~~~~~~~~dPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~L~~~~~~~~~~-  150 (264)
T cd01020          79 VIAAD-------LDGHDDKEGDNPHLWYDPETMSKVANALADALVKADPDNKKYYQANAKKFVASLKPLAAKIAELSAK-  150 (264)
T ss_pred             EEECC-------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf             88336-------6666677999989377999999999999999998690217999999999999999999999985145-


Q ss_pred             CCCCCEEEEECCCCHHHHHHCCCEEEEEC----CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH---HH
Q ss_conf             84473699826652145775297288722----688640007899999997620169718998278997999999---99
Q gi|254780537|r  181 DPEKRWFVTSEGCLVYLAEDFGFKSLYLW----PINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV---AY  253 (294)
Q Consensus       181 p~~~~~~v~~H~af~Y~~~~yGl~~~~~~----~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i---a~  253 (294)
                       .+++.|+++|++|+||+++|||++.+..    ...+|.||||++|+++++.||+++|++||+|++++++.++.|   |+
T Consensus       151 -~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~q~~~~~a~~i~~~a~  229 (264)
T cd01020         151 -YKGAPVAATEPVFDYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQIDALIVNPQQASSATTNITGLAK  229 (264)
T ss_pred             -CCCCEEEEECCCHHHHHHHCCCEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf             -7898699965417999997799450442034123788999999999999999986999999828988089999999998


Q ss_pred             HHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             8299344432012378777886899999999999998620
Q gi|254780537|r  254 ETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       254 e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      ++++++..      +++..+.+.||++||++|+++|.+||
T Consensus       230 ~~~v~v~~------l~e~~~~~~tY~~~M~~Nl~~i~~aL  263 (264)
T cd01020         230 RSGVPVVE------VTETMPNGTTYLTWMLKQVDQLEKAL  263 (264)
T ss_pred             HCCCEEEE------CCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             55956984------25678999989999999999999973


No 9  
>cd01018 ZntC Metal binding protein ZntC.  These proteins are predicted to function as initial receptors in ABC transport of metal ions.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains.  In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00  E-value=0  Score=449.17  Aligned_cols=254  Identities=25%  Similarity=0.383  Sum_probs=226.9

Q ss_pred             CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHCCCCCCC
Q ss_conf             882899975289999998518914899962688980120227124577603789999887610-6899999742355752
Q gi|254780537|r   22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLE-ETYMKYFTNLKKGTKI  100 (294)
Q Consensus        22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E-~~~~~~~~~~~~~~~~  100 (294)
                      +||+||||++|+++||++|+||+++|++|+|+|.|||+|+|+|+|+++|++||||||||.+|| +|+.++.. ..++.++
T Consensus         1 dkp~Vvtsi~pl~~~v~~I~gd~v~V~~Lvp~g~dPH~ye~~psd~~~l~~ADlvv~~G~~lE~~~~~~l~~-~~~~~~v   79 (266)
T cd01018           1 DKPTVAVSIEPQKYFVEKIAGDTVDVVVLVPPGSNPHTYEPKPQQMKKLSEADLYFRIGLGFEEVWLERFRS-NNPKMQV   79 (266)
T ss_pred             CCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHH-CCCCCEE
T ss_conf             998899977799999999839934899806999796468699999999966989999587345889999996-0899828


Q ss_pred             CCCCCCCCHHHHHH---------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             11123742022210---------012334630111221356789999999998643188899999989986301455337
Q gi|254780537|r  101 ITVTDGINPIGVSE---------DTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSIL  171 (294)
Q Consensus       101 i~~~~~i~~~~~~~---------~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~  171 (294)
                      +++++++..+...+         ++++|+++|||+||||.|++.++++|+++|+++||+|+++|++|+++|.++|++|+.
T Consensus        80 v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DPH~Wldp~~~~~~a~~Ia~~L~~ldP~~~~~y~~N~~~~~~~L~~L~~  159 (266)
T cd01018          80 VNMSKGITLIPMADHHHHHHGEHEHHHHGNYDPHIWLSPANAKIMAENIYEALAELDPQNATYYQANLDALLAELDALDS  159 (266)
T ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             98678951044566445556654555568999846578676999999999999886935089999999999999999999


Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             89988630784473699826652145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r  172 PLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV  251 (294)
Q Consensus       172 ~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i  251 (294)
                      +++++++.+  .+|.|+++|++|+||+++|||+++++.  .++.||||++|+++++.||+++|+|||+|++++++.+++|
T Consensus       160 ~~~~~l~~~--~~~~~v~~Hdaf~Yf~~~ygl~~~~i~--~~~~eps~~~l~~l~~~ik~~~v~~If~E~~~~~k~~~~i  235 (266)
T cd01018         160 EIRTILSKL--KQRAFMVYHPAWGYFARDYGLTQIPIE--EEGKEPSPADLKRLIDLAKEKGVRVVFVQPQFSTKSAEAI  235 (266)
T ss_pred             HHHHHHCCC--CCCEEEEECCCHHHHHHHCCCEEEECC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf             999973776--787389965447999986798798605--8888989999999999999839989997089990999999


Q ss_pred             HHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99829934443201237877788689999999999999
Q gi|254780537|r  252 AYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKI  289 (294)
Q Consensus       252 a~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l  289 (294)
                      |+++|++++.   +|+|+.      +|.+.|+.+.+.+
T Consensus       236 a~etg~kv~~---ldpL~~------~~~~~~~~~~~~~  264 (266)
T cd01018         236 AREIGAKVVT---IDPLAA------DWEENLLKVADAF  264 (266)
T ss_pred             HHHHCCCEEE---ECCCCC------CHHHHHHHHHHHH
T ss_conf             9970993799---678640------2799999999874


No 10 
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=100.00  E-value=0  Score=389.80  Aligned_cols=287  Identities=21%  Similarity=0.344  Sum_probs=247.8

Q ss_pred             CHHHHHHHHHHHHH-CCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEE
Q ss_conf             92699999999986-04643358828999752899999985189148999626889801202271245776037899998
Q gi|254780537|r    1 MLRYFICLLFSYIP-MSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCN   79 (294)
Q Consensus         1 M~r~~~~l~~~~~~-~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~   79 (294)
                      |+|+++.+..++.+ +.++.......||||+.|+++|+..|+....+...|+|+|.+||+|.+.|||+++|++||||||.
T Consensus         3 ~~~~~~l~~A~~A~~~~~~~a~A~~~Vv~SIKPl~~iasaI~dGVg~p~vlvp~gASpHdYsLrPSDv~rlq~Adlv~Wv   82 (318)
T COG4531           3 LHKKTLLLSALFALLLGSAPAAAAAAVVTSIKPLGFIASAIADGVGEPEVLLPGGASPHDYSLRPSDVKRLQSADLVVWV   82 (318)
T ss_pred             CHHHHHHHHHHHHHHHCCCHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf             05779999999999844530004632146504179999999826899736427999955335783578886318789997


Q ss_pred             CCCCCHHHHHHHHHCCCCCCCCCCCCC--CCHHHH-----------------------HHCCCCCCCCCHHHHHHHHHHH
Q ss_conf             876106899999742355752111237--420222-----------------------1001233463011122135678
Q gi|254780537|r   80 GLHLEETYMKYFTNLKKGTKIITVTDG--INPIGV-----------------------SEDTSVDSEPNPHAWMSLTNAM  134 (294)
Q Consensus        80 G~~~E~~~~~~~~~~~~~~~~i~~~~~--i~~~~~-----------------------~~~~~~~~~~dpH~Wldp~~~~  134 (294)
                      |.++|.|+.|.+... ...++|.+++.  +.++..                       +++++|+|++|+|+||||.|++
T Consensus        83 Gp~lEaFL~Kpl~~l-~~~kvv~l~d~~~v~~L~~r~~hd~~~e~~h~hdH~~~dh~~d~dH~H~G~~d~H~Wl~P~~ak  161 (318)
T COG4531          83 GPDLEAFLDKPLSGL-PGAKVVTLADLPGVKPLLFREAHDHEEEHDHGHDHAGADHKGDHDHHHEGEYDMHLWLSPAIAK  161 (318)
T ss_pred             CCCHHHHHHHHHHCC-CCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHH
T ss_conf             866787763122136-6772786231478743222222564211355434567655675445687875730132606789


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCC
Q ss_conf             99999999986431888999999899863014553378998863078447369982665214577529728872268864
Q gi|254780537|r  135 IYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSD  214 (294)
Q Consensus       135 ~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~  214 (294)
                      .+|..|++.|.++||+|++.|++|+++|..+|.+++..+.++++  |.+++.|+++|+||+||.++||++..+...++|+
T Consensus       162 ~~A~~i~~~L~e~dp~~~a~y~aNlk~f~~~La~~d~~i~~~L~--pvk~Kpf~VFHDAY~YFE~~ygl~~~G~fTVsPe  239 (318)
T COG4531         162 AVAAAIAKKLAELDPQNAAKYDANLKDFEAQLAALDKKVGEELA--PVKGKPFFVFHDAYGYFENAYGLKPLGHFTVSPE  239 (318)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCEEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf             99999999998649455899998899999999988899998712--4578975898424888887407664652776734


Q ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHC
Q ss_conf             00078999999976201697189982789979999999982993444320123787778-86899999999999998620
Q gi|254780537|r  215 SERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDG-PAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       215 ~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~-~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      ..|++++|.+++++|++++..|||.|||+.+++++++++.|.++.++   +|++|.... ..++|..+|++-.+..+.||
T Consensus       240 v~PGA~rl~~Ir~~l~e~~a~CvFaEPQF~Pkvve~v~~GT~vr~g~---LDPlg~~i~lg~~sY~~fl~~lA~sy~~CL  316 (318)
T COG4531         240 VQPGAKRLAEIRTQLKEQKATCVFAEPQFRPKVVETVAEGTSVRSGT---LDPLGTNIKLGKDSYFNFLSNLANSYASCL  316 (318)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCCEEE---ECCCCCCCEECCCHHHHHHHHHHHHHHHHH
T ss_conf             47437899999999997279677218987618999985477543142---066766200384069999999999999985


No 11 
>cd01145 TroA_c Periplasmic binding protein TroA_c.  These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=100.00  E-value=0  Score=368.30  Aligned_cols=197  Identities=23%  Similarity=0.306  Sum_probs=173.2

Q ss_pred             CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             88289997528999999851891489996268898012022712457760378999988761068999997423557521
Q gi|254780537|r   22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKII  101 (294)
Q Consensus        22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i  101 (294)
                      .+++||||++|+++||++||||+++|++|+|+|.|||+|||+|+|+++|++|||||+||.+||+|+.+++....... +.
T Consensus         1 a~l~Vvts~~pl~~iv~~I~Gd~v~V~~Lvp~g~dPH~yep~p~d~~~l~~Adlv~~~G~~lE~~~~k~~~~~~~~~-~~   79 (203)
T cd01145           1 AALNVVVTFPDLKDLVREVAGDAVIVSALTPPGVDPHQYQLKPSDIAKMRKADLVVTSGHELEGFEPKLAELSSNSK-VQ   79 (203)
T ss_pred             CCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC-CC
T ss_conf             99679998779999999983995389980698989756658999999983897999948870779999998656875-21


Q ss_pred             CCCC------CCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             1123------7420222100123346301112213567899999999986431888999999899863014553378998
Q gi|254780537|r  102 TVTD------GINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKT  175 (294)
Q Consensus       102 ~~~~------~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~  175 (294)
                      ....      ........+++++|++.|||+||||.|++.++++|+++|+++||+|+++|++|+++|.++|++|+.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~  159 (203)
T cd01145          80 PGIKILIEDSDTVGMVDRAMGDYHGKGNPHVWLDPNNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWER  159 (203)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             13101222345555456555556799998014799999999999999999868460899999999999999999999999


Q ss_pred             HHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHH
Q ss_conf             8630784473699826652145775297288722688640007899
Q gi|254780537|r  176 RIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSM  221 (294)
Q Consensus       176 ~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~  221 (294)
                      +++  +.++|.||++|+||+||+++|||+++++.+.+||.+|||++
T Consensus       160 ~~~--~~~~~~~v~~H~af~Yfa~~ygl~~~~~~~~~p~~~Ps~~h  203 (203)
T cd01145         160 QFE--GLKGIQVVAYHPSYQYLADWLGIEVVASLEPLPELPPTSSH  203 (203)
T ss_pred             HHC--CCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf             737--76799799978737999997799798987569998989998


No 12 
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+.  Their ligand binding site is formed in the interface between two globular domains linked by a single helix.  Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).  The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe.   Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=98.36  E-value=2.7e-05  Score=56.08  Aligned_cols=132  Identities=23%  Similarity=0.264  Sum_probs=98.8

Q ss_pred             EEEEECHHHHHHHHHHCCCEEEEEEEECCCCC-------------CCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHH
Q ss_conf             89997528999999851891489996268898-------------01202271245776037899998876106899999
Q gi|254780537|r   25 VVLSSFSIIGDITQNIAKDLVTVTTLVEAGND-------------SHSYQVTSADAIKIQNADLILCNGLHLEETYMKYF   91 (294)
Q Consensus        25 ~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~d-------------pH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~   91 (294)
                      .||++.+...+++..++++..-|......+.+             +|.++|++.++.++ +.|+||.++...+.+..++.
T Consensus         2 riv~~~~~~~e~l~~lg~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~~l-~PDlvi~~~~~~~~~~~~l~   80 (148)
T cd00636           2 RVVALDPGATELLLALGGDDKPVGVADPSGYPPEAKALLEKVPDVGHGYEPNLEKIAAL-KPDLIIANGSGLEAWLDKLS   80 (148)
T ss_pred             EEEEECCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCC-CCCEEEEECCCCHHHHHHHH
T ss_conf             19995750899999869998599995677887033200012562688889999999707-99899994666788999998


Q ss_pred             HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             74235575211123742022210012334630111221356789999999998643188899999989986301455337
Q gi|254780537|r   92 TNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSIL  171 (294)
Q Consensus        92 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~  171 (294)
                      . ..  ..++.+.....                   .++.++...++.++..|.         +++++++|.+.+++...
T Consensus        81 ~-~~--~~~~~~~~~~~-------------------~~~~~~~~~i~~lg~~~~---------~~~~a~~~~~~~~~~~~  129 (148)
T cd00636          81 K-IA--IPVVVVDEASE-------------------LSLENIKESIRLIGKALG---------KEENAEELIAELDARLA  129 (148)
T ss_pred             H-CC--CCEEEECCCCC-------------------CCHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHH
T ss_conf             6-39--97899578888-------------------999999999999999969---------81899999999999999


Q ss_pred             HHHHHHHCCCCCCCEEE
Q ss_conf             89988630784473699
Q gi|254780537|r  172 PLKTRIEKVDPEKRWFV  188 (294)
Q Consensus       172 ~~~~~~~~~p~~~~~~v  188 (294)
                      .++.+.+.++..+..++
T Consensus       130 ~i~~~~~~~~~~~~~~~  146 (148)
T cd00636         130 ELRAKLAKIPKKKVSLV  146 (148)
T ss_pred             HHHHHHCCCCCCCEEEE
T ss_conf             99999638999967998


No 13 
>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase.
Probab=94.94  E-value=0.36  Score=28.25  Aligned_cols=151  Identities=10%  Similarity=0.112  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH----HHHHHCCC
Q ss_conf             21356789999999998643188899999989986301455337899886307844736998266521----45775297
Q gi|254780537|r  128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV----YLAEDFGF  203 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~----Y~~~~yGl  203 (294)
                      +.+.+.......|++.|..-.  ..+.+.+.-+++..++.+    ++..+.    .+|.+|...+.+.    -|..++|+
T Consensus       227 ~G~~~T~~~l~~i~~~~g~~~--~~~~i~~e~~~~~~~~~~----~~~~l~----gkrv~v~g~~~~~~~l~~~L~ElG~  296 (398)
T pfam00148       227 IGIEATDRFLRALAELLGKEV--APEVIAEERGRLLDALAD----YHEYLA----GKRVAIYGDPDLAWGLARFLEELGM  296 (398)
T ss_pred             CCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHH----HHHHHC----CCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             777899999999999968998--778999999999999999----988737----9779998884579999999998799


Q ss_pred             EEEEECCCCCCCCC--C-------------HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE--EECC
Q ss_conf             28872268864000--7-------------89999999762016971899827899799999999829934443--2012
Q gi|254780537|r  204 KSLYLWPINSDSER--S-------------PSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV--LYVD  266 (294)
Q Consensus       204 ~~~~~~~~~~~~ep--s-------------~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~--~~~d  266 (294)
                      +++.+.......+-  .             -.+..++.+.|++.+...||..+     .-+.+|++.+++.+..  ...|
T Consensus       297 ~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDliig~s-----~~~~~a~~~~ip~i~~~~P~~~  371 (398)
T pfam00148       297 EVVAVGTGTGHPDDYERLKALLDGTLRVIDDADLEELEELIKELKPDLLIGNS-----KERYLAKKLGIPLVRIGFPIHD  371 (398)
T ss_pred             EEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEEECH-----HHHHHHHHCCCCEEEEECCEEE
T ss_conf             79999967898788998998547897799779999999998726999999891-----7899999739988982278056


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             3787778868999999999999986209
Q gi|254780537|r  267 SLSKPDGPAPTYLDLLRFSLTKIVDTLF  294 (294)
Q Consensus       267 ~l~~~~~~~~~Y~~~m~~N~~~l~~aL~  294 (294)
                      -++....+--.|.+.+ +-++.|.++|.
T Consensus       372 ~~~~~~~p~~Gy~G~~-~l~~~i~n~l~  398 (398)
T pfam00148       372 RNGLHRRPYVGYEGAL-NLADEIANALL  398 (398)
T ss_pred             EECCCCCCEEEHHHHH-HHHHHHHHHHC
T ss_conf             8667788606087599-99999998629


No 14 
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=93.76  E-value=0.63  Score=26.58  Aligned_cols=228  Identities=11%  Similarity=0.099  Sum_probs=90.7

Q ss_pred             CCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             82899975289999998518914899962688980120227124577603789999887610689999974235575211
Q gi|254780537|r   23 KKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIIT  102 (294)
Q Consensus        23 ~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~  102 (294)
                      ...||+..+...++.-.++.+-|=|   -....+      -|...+.+.      ..|...+|-+++++ +.+++.. +.
T Consensus        35 p~RIV~l~~~~~eil~~Lg~~~VGv---~~~~~~------~p~~~k~v~------~vG~~~~pnlE~I~-aLkPDLI-i~   97 (289)
T TIGR03659        35 EERIVATSVAVTEILDKLDLDLVGV---PTSQKT------LPKRYKDVP------EVGNPMSPDMEKIK-SLKPTVV-LS   97 (289)
T ss_pred             CCEEEECCCCHHHHHHHCCCCEEEE---ECCCCC------CHHHHHCCC------CCCCCCCCCHHHHH-HCCCCEE-EE
T ss_conf             9659986863799999869975999---778766------968871857------21887899999997-3699789-95


Q ss_pred             CCCCCCHHHHHHCCCCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf             12374202221001233463011122---135678999999999864318889999998998630145533789988630
Q gi|254780537|r  103 VTDGINPIGVSEDTSVDSEPNPHAWM---SLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEK  179 (294)
Q Consensus       103 ~~~~i~~~~~~~~~~~~~~~dpH~Wl---dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~  179 (294)
                       +.......... - ..-+. |.+-+   +.+.+......+++.+.+-  +.       ++++.+++++-..+++++++.
T Consensus        98 -~~~~~~~~~~~-l-~~~~i-~v~~~~~~~~~~i~~~i~~lg~i~g~e--~~-------A~~li~~~~~~l~~i~~~~~~  164 (289)
T TIGR03659        98 -VTTLEEDLGPK-F-KQLGV-EATFLNLTSVDGMKKSITELGEKYGRE--EQ-------AEKLVKEINEKEAEVKKKVKG  164 (289)
T ss_pred             -CCCCHHHHHHH-H-HHCCC-EEEEECCCCHHHHHHHHHHHHHHHCCH--HH-------HHHHHHHHHHHHHHHHHHHCC
T ss_conf             -57425878999-9-86097-599983789999999999999983877--88-------999999999999999987346


Q ss_pred             CCCCCCEEEEE----------CCCC-HHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC-CCHHH
Q ss_conf             78447369982----------6652-145775297288722688640007899999997620169718998278-99799
Q gi|254780537|r  180 VDPEKRWFVTS----------EGCL-VYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSEST-NSDQP  247 (294)
Q Consensus       180 ~p~~~~~~v~~----------H~af-~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~-~~~~~  247 (294)
                      .. +.+.++..          ..+| +-+.+..|.+.+.-.....-...|.       +.+-+.+..+||.-.. .+...
T Consensus       165 ~~-~~~v~~~~~~~~~~~~~~~~s~~g~il~~~G~~Nv~~~~~~~~~~~s~-------E~l~~~nPDvI~~~~~~~~~~~  236 (289)
T TIGR03659       165 KK-KPKVLILMGVPGSYLVATENSYIGDLVKLAGGENVYKGNKQEYLSSNT-------EYLLKANPDIILRAAHGMPDEV  236 (289)
T ss_pred             CC-CCEEEEEEECCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCH-------HHHHHCCCCEEEEECCCCCHHH
T ss_conf             78-974999993499538845996467899981674202256887554489-------9997609989999557884566


Q ss_pred             HHHHHHHH----------CCCEEEEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             99999982----------993444320123--787778868999999999999986209
Q gi|254780537|r  248 AKQVAYET----------NASYGGVLYVDS--LSKPDGPAPTYLDLLRFSLTKIVDTLF  294 (294)
Q Consensus       248 ~~~ia~e~----------~~~~~~~~~~d~--l~~~~~~~~~Y~~~m~~N~~~l~~aL~  294 (294)
                      .+...++.          -++-..+.++|+  +...  ++..+.+.    ++.|.++||
T Consensus       237 ~~~~~~~~~~np~w~~l~AVKn~~Vy~ld~~~~~~~--~~~~~~~~----l~~l~k~ly  289 (289)
T TIGR03659       237 KKMFDEEFKTNDIWKHFEAVKNNRVYDLDEELFGMT--ANLKVAEA----LDELKKMLY  289 (289)
T ss_pred             HHHHHHHHHCCCCCCCCCHHCCCCEEEECHHHHCCC--CCHHHHHH----HHHHHHHHC
T ss_conf             888999986295121698200894799787880779--75779999----999999749


No 15 
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; InterPro: IPR012818   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CbiE subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=89.29  E-value=1.9  Score=23.34  Aligned_cols=92  Identities=10%  Similarity=0.056  Sum_probs=68.2

Q ss_pred             CCCCEEEEECCCCHHHHHHCCCEEE-EECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC-CCCHH-HHHHHHHHHCCC
Q ss_conf             4473699826652145775297288-72268864000789999999762016971899827-89979-999999982993
Q gi|254780537|r  182 PEKRWFVTSEGCLVYLAEDFGFKSL-YLWPINSDSERSPSMMRHAINQMRSHKIKFIFSES-TNSDQ-PAKQVAYETNAS  258 (294)
Q Consensus       182 ~~~~~~v~~H~af~Y~~~~yGl~~~-~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~-~~~~~-~~~~ia~e~~~~  258 (294)
                      ..+-.++..=.++||++.+.|+.-. +....-|+.+....+.+...+.++.+..-.+++++ ..+++ .++.| .+.|..
T Consensus        93 ~~~~~~iPg~SS~Q~A~ARlg~~w~d~~~~S~HGR~~~~~~~~~~~~~~~~~r~~~~lTd~~~~~P~~iA~~L-~~~g~~  171 (210)
T TIGR02467        93 KEQLEIIPGISSVQLAFARLGLPWQDAVLISLHGRELDEEDKKLLLALLRGARKVAVLTDPARNGPAEIAREL-IELGLG  171 (210)
T ss_pred             CCEEEECCCHHHHHHHHHHCCCCHHHEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHCCCC
T ss_conf             3326871666789999997078811348878740488804568899985079879995287466979999999-974999


Q ss_pred             EE-EEEECCCCCCCCCC
Q ss_conf             44-43201237877788
Q gi|254780537|r  259 YG-GVLYVDSLSKPDGP  274 (294)
Q Consensus       259 ~~-~~~~~d~l~~~~~~  274 (294)
                      .. ++..++.||.+++.
T Consensus       172 ~~~~~~V~EnLg~~~E~  188 (210)
T TIGR02467       172 GSYELTVGENLGYEDER  188 (210)
T ss_pred             CCEEEEEEECCCCCCCE
T ss_conf             50478876005885633


No 16 
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=87.87  E-value=2.3  Score=22.73  Aligned_cols=21  Identities=10%  Similarity=0.031  Sum_probs=13.2

Q ss_pred             CCEEEEECHHHHHHHHHHCCC
Q ss_conf             828999752899999985189
Q gi|254780537|r   23 KKVVLSSFSIIGDITQNIAKD   43 (294)
Q Consensus        23 ~~~Vv~s~~pl~~iv~~I~gd   43 (294)
                      +-.||+......+..-.++..
T Consensus        46 PqRVV~l~~~~~d~llaLg~p   66 (319)
T PRK10957         46 PARIVSTSVTLTGTLLAIDAP   66 (319)
T ss_pred             CCEEEEECCCCHHHHHHCCCC
T ss_conf             967999548627889867996


No 17 
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR).  Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=87.35  E-value=2.5  Score=22.53  Aligned_cols=156  Identities=12%  Similarity=0.162  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCC-C----H-HHH
Q ss_conf             213567899999999986431888999---999899863014553378998863078447369982665-2----1-457
Q gi|254780537|r  128 MSLTNAMIYIENIRKALTALDPSNAKK---YELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGC-L----V-YLA  198 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L~~~dP~~~~~---y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~a-f----~-Y~~  198 (294)
                      .-..+..+....|++.+..-.|.....   +.+....+...+.+.......+  -+ ..+|..| +-++ +    . .++
T Consensus       246 iGi~~T~~fL~~i~~~~g~e~~~e~~~~e~~~~~~~~~~~~~~d~~~~~~~~--~l-~GKrvaI-~gd~~~~~~l~~fl~  321 (430)
T cd01981         246 IGVVATARFLREIQELLGIQIIPELVNVEPYIDSQTRWVSQSARSSRSIDSQ--NL-TGKRAFV-FGDATHVAAATRILA  321 (430)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CC-CCCEEEE-ECCCHHHHHHHHHHH
T ss_conf             6789999999999999589862334557889988776555778876555654--03-7977999-878158999999999


Q ss_pred             HHCCCEEEEECCCCCCC-C---CC----------HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf             75297288722688640-0---07----------8999999976201697189982789979999999982993444320
Q gi|254780537|r  199 EDFGFKSLYLWPINSDS-E---RS----------PSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLY  264 (294)
Q Consensus       199 ~~yGl~~~~~~~~~~~~-e---ps----------~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~  264 (294)
                      ++.|++++..-...... +   ..          -.|..++.+.+++.++..+|.     +.--+.+|++.|+|.+.+-+
T Consensus       322 ~ELGm~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~~D~~el~~~i~~~~pDlliG-----~s~ek~ia~k~giPlirigf  396 (430)
T cd01981         322 REMGFRVVGAGTYCKEDAKWFREQATGYCDEALITDDHTEVGDMIARTEPELIFG-----TQMERHIGKRLDIPCAVISA  396 (430)
T ss_pred             HHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEE-----CCCHHHHHHHHCCCEEEECC
T ss_conf             8569769970677664689999987436980899589999999986249999996-----64189999986969687448


Q ss_pred             ---CCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             ---12378777886899999999999998620
Q gi|254780537|r  265 ---VDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       265 ---~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                         .+..+....+--.|-+. .+-++.|.++|
T Consensus       397 Pi~~~~~~~~~~P~~GY~Ga-~~l~~~I~nal  427 (430)
T cd01981         397 PVHIQNFPLGYRPFLGYEGT-NVIADTVYNSL  427 (430)
T ss_pred             CCEECCCCCCCCCCCCHHHH-HHHHHHHHHHH
T ss_conf             71131446678994202769-99999997763


No 18 
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=85.04  E-value=3.3  Score=21.76  Aligned_cols=103  Identities=9%  Similarity=0.052  Sum_probs=57.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHH---------HHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHH-
Q ss_conf             9269999999998604643358828999752899---------999985189148999626889801202271245776-
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIG---------DITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKI-   70 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~---------~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i-   70 (294)
                      ||++++++++++.+.++++.+.+++|-+|++-+.         .+.++.-.-.++|... .++.|+-.   .-+|+..+ 
T Consensus         3 ~k~~~~~~~~~~~~~~~~a~a~~~~IGv~~~~~~~~~~~~~~~~~~~~Ake~G~~v~v~-dA~~D~~~---Qi~qIe~~I   78 (330)
T PRK10355          3 IKNILLTLCAALLLTSVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQ-SANGNEET---QMSQIENMI   78 (330)
T ss_pred             HHHHHHHHHHHHHHHCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEE-CCCCCHHH---HHHHHHHHH
T ss_conf             68999999999998446112138679999068888689999999999999759989997-18999899---999999999


Q ss_pred             -CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             -0378999988761068999997423557521112374
Q gi|254780537|r   71 -QNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGI  107 (294)
Q Consensus        71 -~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i  107 (294)
                       ++.|.++.+-.+-+....-+.+....+.++|.....+
T Consensus        79 ~qgvdaIiv~p~D~~al~~~v~~A~~aGIPVI~~D~~i  116 (330)
T PRK10355         79 NRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAYDRMI  116 (330)
T ss_pred             HCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf             85999999969987888999999998799499957877


No 19 
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=82.69  E-value=4.1  Score=21.11  Aligned_cols=53  Identities=15%  Similarity=0.156  Sum_probs=24.5

Q ss_pred             CCCEEEEECHHHHHHHHHHCCCE-EEEEEEECCCCCCCCCCCCHHHHHHHCC----CCEEEE
Q ss_conf             88289997528999999851891-4899962688980120227124577603----789999
Q gi|254780537|r   22 QKKVVLSSFSIIGDITQNIAKDL-VTVTTLVEAGNDSHSYQVTSADAIKIQN----ADLILC   78 (294)
Q Consensus        22 ~~~~Vv~s~~pl~~iv~~I~gd~-v~V~~li~~g~dpH~ye~tp~d~~~i~~----Adliv~   78 (294)
                      +...+|.++..++.--.+|+.-. .+|..+-.+-..    ..+|.+++..-+    .+++..
T Consensus        80 gdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~----~v~p~~v~~~L~~~~~~~~V~~  137 (383)
T COG0075          80 GDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE----AVDPEEVEEALDKDPDIKAVAV  137 (383)
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCC----CCCHHHHHHHHHCCCCCCEEEE
T ss_conf             986999827807779999999829966998478888----7999999999852899508999


No 20 
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=82.56  E-value=4.1  Score=21.08  Aligned_cols=18  Identities=6%  Similarity=-0.101  Sum_probs=8.6

Q ss_pred             CCCHHHHHHHHHHHCCCEEE
Q ss_conf             89979999999982993444
Q gi|254780537|r  242 TNSDQPAKQVAYETNASYGG  261 (294)
Q Consensus       242 ~~~~~~~~~ia~e~~~~~~~  261 (294)
                      .++-..+++.|.  |++++.
T Consensus       277 gfg~~~lEAma~--G~PVVa  294 (357)
T cd03795         277 AFGIVLLEAMAF--GKPVIS  294 (357)
T ss_pred             CCCHHHHHHHHC--CCCEEE
T ss_conf             566679999987--998999


No 21 
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=81.75  E-value=3.7  Score=21.40  Aligned_cols=74  Identities=11%  Similarity=0.069  Sum_probs=52.2

Q ss_pred             HHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             6301455337899886307844736998266521457752972887226886400078999999976201697189982
Q gi|254780537|r  162 YSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE  240 (294)
Q Consensus       162 ~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e  240 (294)
                      +--.|.+|.-.+  +..++|..=..+|+.|+.+..++++||+....+.-   +.+-.+++=+++.+.++++++..|..-
T Consensus        98 ~dHCL~DLL~R~--~~GeL~~eI~~VISNH~dL~~lae~~~IPF~~iPv---~~~~K~e~E~~i~~~~~~~~~d~ivla  171 (285)
T PRK06027         98 EDHCLGDLLWRW--RSGELPVEIAAVISNHPDLRSLVESFGIPFHHVPV---TKETKAEAEAQLLELIDEYQPDLVVLA  171 (285)
T ss_pred             CCCCHHHHHHHH--HCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEH
T ss_conf             453789999987--56985625779942857899999986998288268---766537799999999873497199763


No 22 
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=81.37  E-value=3.1  Score=21.91  Aligned_cols=68  Identities=19%  Similarity=0.124  Sum_probs=36.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCC--CCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHH-----HHHHHCCC
Q ss_conf             92699999999986046433--588289997528999999851891489996268898012022712-----45776037
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASAT--TQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSA-----DAIKIQNA   73 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~--~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~-----d~~~i~~A   73 (294)
                      |||+|++++.++++++..+.  .++..-.+--.|+        .+..+|+-..--| |||=|..-|.     ..++--.+
T Consensus         1 mkk~~~~~~~llls~~a~Aa~~~eG~~Y~~L~~p~--------~~~~eV~EfFsy~-CpHCy~fEp~l~i~~~~~k~lp~   71 (207)
T PRK10954          1 MKKIWLALAGMVLAFSASAAQFTDGKQYTTLDKPV--------AGAPQVLEFFSFY-CPHCYQFEEVLHVSDNVKKKLPE   71 (207)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCC--------CCCCCEEEEEEEC-CCCHHHCCHHCCCHHHHHHHCCC
T ss_conf             91599999999999772250354899755888888--------9997089999746-97255107001516999974899


Q ss_pred             CEEE
Q ss_conf             8999
Q gi|254780537|r   74 DLIL   77 (294)
Q Consensus        74 dliv   77 (294)
                      |+-|
T Consensus        72 ~v~f   75 (207)
T PRK10954         72 GTKM   75 (207)
T ss_pred             CCEE
T ss_conf             9789


No 23 
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase; InterPro: IPR011880    Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA) . Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in Gram-positive prokaryotes . In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions ..
Probab=80.83  E-value=4.3  Score=20.92  Aligned_cols=93  Identities=12%  Similarity=0.046  Sum_probs=49.1

Q ss_pred             CCCEEEEECCCCHH-----------HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             47369982665214-----------5775297288722688640007899999997620169718998278997999999
Q gi|254780537|r  183 EKRWFVTSEGCLVY-----------LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV  251 (294)
Q Consensus       183 ~~~~~v~~H~af~Y-----------~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i  251 (294)
                      ++|.=-..|.||||           =++++|..++++.|-..+.     +    +++|++-+.++|.+-|..-=.+++.+
T Consensus       115 GGr~g~~~H~AYGYGLFTGGLG~HyGaEkLG~~~vPiSGG~Tek-----Q----~qLI~Df~P~iI~~TPSY~L~~~e~l  185 (431)
T TIGR02155       115 GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQTEK-----Q----VQLIQDFKPDIIMVTPSYMLNILEEL  185 (431)
T ss_pred             CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCHHH-----H----HHHHHCCCCCEEEECHHHHHHHHHHH
T ss_conf             78988757873054300032456423120660787137978056-----7----77643379888985778999999988


Q ss_pred             HHHHCCCEE-EEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             998299344-432012378777886899999999999998
Q gi|254780537|r  252 AYETNASYG-GVLYVDSLSKPDGPAPTYLDLLRFSLTKIV  290 (294)
Q Consensus       252 a~e~~~~~~-~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~  290 (294)
                      .+.. +... .-+-.--+|.+.     |-+-||.++++..
T Consensus       186 ~r~~-~dp~~~Sl~~gilGaEP-----W~~~mR~~~E~~~  219 (431)
T TIGR02155       186 KRMG-IDPEQTSLKVGILGAEP-----WTNAMRKEIEARL  219 (431)
T ss_pred             HHCC-CCHHHCCEEEEEECCCC-----CHHHHHHHHHHHH
T ss_conf             6406-88645636788723771-----0588999999873


No 24 
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases.  ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=80.71  E-value=4.8  Score=20.65  Aligned_cols=16  Identities=19%  Similarity=0.090  Sum_probs=6.0

Q ss_pred             HHHHHHHHCCCEEEEE
Q ss_conf             9999998518914899
Q gi|254780537|r   33 IGDITQNIAKDLVTVT   48 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~   48 (294)
                      ..++++.++....+|+
T Consensus        19 v~~la~~L~~~Gh~V~   34 (392)
T cd03805          19 VVDAALALQSRGHEVT   34 (392)
T ss_pred             HHHHHHHHHHCCCEEE
T ss_conf             9999999997699399


No 25 
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=80.61  E-value=4.8  Score=20.63  Aligned_cols=73  Identities=8%  Similarity=0.078  Sum_probs=51.7

Q ss_pred             HCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             301455337899886307844736998266521457752972887226886400078999999976201697189982
Q gi|254780537|r  163 SEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE  240 (294)
Q Consensus       163 ~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e  240 (294)
                      --.|.+|.-.+  +..++|..=..+|+.|+.+..++++||+....+.-   +.+-.+.+=+++.+.++++++..|+.-
T Consensus       104 ~HCL~DLL~R~--~~GeL~~eI~~VISNH~dL~~lae~~gIPF~hipv---~~~~k~~~e~~~~~~~~~~~~d~vvla  176 (289)
T PRK13010        104 DHCLNDLLYRW--RMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPV---TPDTKAQQEAQILDLIETSGAELVVLA  176 (289)
T ss_pred             HHHHHHHHHHH--HCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             45099999998--74985860149997877789999977998398268---777526789999999871398899870


No 26 
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=79.94  E-value=5  Score=20.49  Aligned_cols=72  Identities=17%  Similarity=0.318  Sum_probs=35.1

Q ss_pred             ECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHH--HH---HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             7528999999851891489996268898012022712--45---77603789999887610689999974235575211
Q gi|254780537|r   29 SFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSA--DA---IKIQNADLILCNGLHLEETYMKYFTNLKKGTKIIT  102 (294)
Q Consensus        29 s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~--d~---~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~  102 (294)
                      +..-+..+++..+.+-+....--....||-.|==+-+  ++   ..-.++|++|.++ .+.|-=.+.++..- +.++++
T Consensus        18 ~l~El~~L~~t~g~~vv~~~~q~~~~~~~~~~~G~GKl~ei~~~~~~~~~~~vi~d~-~Lsp~Q~rnLe~~~-~~~V~D   94 (351)
T TIGR03156        18 SLEELAELARTAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEALEADLVIFNH-ELSPSQERNLEKAL-GCRVID   94 (351)
T ss_pred             HHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEECCCHHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHH-CCEEEE
T ss_conf             599999999978998999999944899742001501999999999855999999989-79999999999986-988971


No 27 
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=79.19  E-value=5.3  Score=20.33  Aligned_cols=72  Identities=11%  Similarity=0.091  Sum_probs=51.1

Q ss_pred             HCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             30145533789988630784473699826652145775297288722688640007899999997620169718998
Q gi|254780537|r  163 SEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFS  239 (294)
Q Consensus       163 ~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~  239 (294)
                      --.|.+|.-  +.+..++|..=..+|+.|+.+..++++||+....+.-   +.+-.+.+=+++.+.++++++..|..
T Consensus       101 ~HCL~DLL~--R~~~GeL~~eI~~VISNH~dL~~lae~~~IPF~~iPv---~~~~K~e~E~~~~~~~~~~~~d~ivl  172 (287)
T PRK13011        101 DHCLNDLLY--RWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPI---TPDTKPQQEAQVLDVIEESGAELVVL  172 (287)
T ss_pred             CCCHHHHHH--HHHCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCCEEEH
T ss_conf             236999999--9764986844658734986789999976998288378---87763789999999987339739943


No 28 
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=79.11  E-value=4.8  Score=20.61  Aligned_cols=20  Identities=15%  Similarity=0.182  Sum_probs=9.8

Q ss_pred             HHHHHHHHCCCEEEEEEEEC
Q ss_conf             99999985189148999626
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTLVE   52 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~li~   52 (294)
                      ...+++.+.....+|+.+.+
T Consensus        20 ~~~La~~L~~~GheV~Vit~   39 (374)
T cd03817          20 IRRLAEELEKRGHEVYVVAP   39 (374)
T ss_pred             HHHHHHHHHHCCCEEEEEEC
T ss_conf             99999999977998999972


No 29 
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485    This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=78.44  E-value=5.6  Score=20.18  Aligned_cols=66  Identities=21%  Similarity=0.255  Sum_probs=33.7

Q ss_pred             HHHHCCCEEEEECCCCCCCCCCHH-HHHHHHHHHCCCCCEEEEEECCCCH----HHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             577529728872268864000789-9999997620169718998278997----9999999982993444320123787
Q gi|254780537|r  197 LAEDFGFKSLYLWPINSDSERSPS-MMRHAINQMRSHKIKFIFSESTNSD----QPAKQVAYETNASYGGVLYVDSLSK  270 (294)
Q Consensus       197 ~~~~yGl~~~~~~~~~~~~eps~~-~l~~~~~~ik~~~v~~if~e~~~~~----~~~~~ia~e~~~~~~~~~~~d~l~~  270 (294)
                      -+.+||..-+=+.    |+||.-+ ||-+++..|++.+++-|=  -..|.    +.|+.| +++|..=+- ..+|+|..
T Consensus        57 ~a~~fGV~kvKlT----GGEPlLR~D~~~Ii~~~~~~~~~~vS--mTTNG~LL~~~A~~L-k~AGLdRVN-VSLdtld~  127 (324)
T TIGR02668        57 VASEFGVRKVKLT----GGEPLLRKDLIEIIRRIKDYGIKDVS--MTTNGILLEKLAKKL-KEAGLDRVN-VSLDTLDP  127 (324)
T ss_pred             HHHHCCCCEEEEC----CCCCCHHHHHHHHHHHHCCCCCEEEE--CCCCHHHHHHHHHHH-HHHCCCEEE-ECCCCCCH
T ss_conf             9987088327751----78743456699999861467503442--030314489899999-982856131-20267886


No 30 
>pfam00121 TIM Triosephosphate isomerase.
Probab=77.11  E-value=6.1  Score=19.93  Aligned_cols=59  Identities=14%  Similarity=0.227  Sum_probs=44.9

Q ss_pred             CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC----------CCEEEEEECCCCHHHHHHHHH
Q ss_conf             7369982665214577529728872268864000789999999762016----------971899827899799999999
Q gi|254780537|r  184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH----------KIKFIFSESTNSDQPAKQVAY  253 (294)
Q Consensus       184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~----------~v~~if~e~~~~~~~~~~ia~  253 (294)
                      ++.+++|.|.|.               +.++..|++.++.++...||+.          +++ |++....+++-++.+.+
T Consensus       157 ~~iiIAYEPvWA---------------IGtG~~as~~~i~~~~~~Ir~~l~~~~~~~~~~i~-iLYGGSVn~~N~~~i~~  220 (243)
T pfam00121       157 KNLIIAYEPVWA---------------IGTGKVATPEQAQEVHAFIRKYLAELSKEVAEEVR-ILYGGSVNPDNAKELLA  220 (243)
T ss_pred             CCEEEEECCHHH---------------CCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCC-EEEECCCCHHHHHHHHC
T ss_conf             563999678222---------------48999999999999999999999984542316642-89717689989999966


Q ss_pred             HHCCC
Q ss_conf             82993
Q gi|254780537|r  254 ETNAS  258 (294)
Q Consensus       254 e~~~~  258 (294)
                      ..++.
T Consensus       221 ~~~vd  225 (243)
T pfam00121       221 QPDID  225 (243)
T ss_pred             CCCCC
T ss_conf             88998


No 31 
>PRK10576 iron-hydroxamate transporter substrate-binding subunit; Provisional
Probab=76.72  E-value=6.2  Score=19.86  Aligned_cols=259  Identities=7%  Similarity=0.014  Sum_probs=103.7

Q ss_pred             CHHHHHHHHHH-HHH---C-CCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEE-----------EECCCC-C-CCCCCC
Q ss_conf             92699999999-986---0-4643358828999752899999985189148999-----------626889-8-012022
Q gi|254780537|r    1 MLRYFICLLFS-YIP---M-SASATTQKKVVLSSFSIIGDITQNIAKDLVTVTT-----------LVEAGN-D-SHSYQV   62 (294)
Q Consensus         1 M~r~~~~l~~~-~~~---~-~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~-----------li~~g~-d-pH~ye~   62 (294)
                      |+|.++..++| ..+   + ...+....+.||+-.--+..-+-.+|=.-|-|.-           -+|+++ | .--+||
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~RVv~LdW~~aE~llaLGv~Pvgvad~~~Y~~Wv~~P~lp~~V~DVGtR~eP   84 (292)
T PRK10576          5 SRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGITPYGVADTHNYRLWVSEPPLPDSVIDVGLRTEP   84 (292)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf             89999999987499761764223579998699944198999997799852443310022322688999876567688898


Q ss_pred             CHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             71245776037899998876106899999742355752111237420222100123346301112213567899999999
Q gi|254780537|r   63 TSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRK  142 (294)
Q Consensus        63 tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~  142 (294)
                      +-.-+..| +-|+|+.+. .+.+-.. .+.+..   +++...             ...+.+|     ...++.....|++
T Consensus        85 NLE~Ia~L-kPDLIi~s~-~~~~~~~-~Ls~IA---Pt~~~~-------------~~~~~~~-----~~~~~~~~~~la~  140 (292)
T PRK10576         85 NLELLTEM-KPSFMVWSA-GYGPSPE-KLARIA---PGRGFN-------------FSDGKKP-----LAVARKSLTELAQ  140 (292)
T ss_pred             CHHHHHHC-CCCEEEECC-CCCCHHH-HHHHHC---CEEEEE-------------CCCCCCH-----HHHHHHHHHHHHH
T ss_conf             99999746-998899467-6530489-987447---746861-------------4677877-----9999999999999


Q ss_pred             HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHH
Q ss_conf             9864318889--99999899863014553378998863078447369982665214577529728872268864000789
Q gi|254780537|r  143 ALTALDPSNA--KKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPS  220 (294)
Q Consensus       143 ~L~~~dP~~~--~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~  220 (294)
                      .+.+-+-..+  ..|++..+++.+++......--..+.-+..++..+.+.+.-|++..++.||+..- .+.....-.+.-
T Consensus       141 ~lgke~~A~~~la~~~~~la~~r~~l~~~~~~p~~~v~~~d~~~~riyg~nSl~~~vL~~LGL~naw-~~~~~~wG~~~i  219 (292)
T PRK10576        141 RLNLEAAAETHLAQYDDFIRSMKPRFVGRGARPLLMTTLIDPRHMLVFGPNSLFQEVLDEYGIPNAW-QGETNFWGSTAV  219 (292)
T ss_pred             HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHCCCCCCC-CCCCCCCCEEEC
T ss_conf             9699999999999999999999998632478976999996288699982895489999983998756-687665760115


Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---C---CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             99999976201697189982789979999999982---9---9344432012378777886899999999999998620
Q gi|254780537|r  221 MMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYET---N---ASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       221 ~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~---~---~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      .   +.+..+-.+..+++.++..+ ...+.+.+..   +   ++-..+..++++ ..-   ++-.+ ++.-.+.|.+||
T Consensus       220 ~---lE~La~~~d~~~l~~~~~~~-~~~~~l~~spLWq~Lp~Vk~grv~~vp~v-W~f---GG~~S-A~rfa~~l~~aL  289 (292)
T PRK10576        220 G---IDRLAAYKDADVLCFDHGNS-KDMQALMATPLWQAMPFVRAGRFQRVPAV-WFY---GATLS-AMHFVRILDNAL  289 (292)
T ss_pred             C---HHHHCCCCCCEEEEEECCCH-HHHHHHHCCCHHHHCHHHHCCCEEECCCC-CCC---CCHHH-HHHHHHHHHHHH
T ss_conf             7---98962678976999947984-88887754924441804325955767875-554---58999-999999999986


No 32 
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=76.07  E-value=5.7  Score=20.14  Aligned_cols=24  Identities=4%  Similarity=0.033  Sum_probs=13.4

Q ss_pred             HHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf             999999851891489996268898
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTLVEAGND   56 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~li~~g~d   56 (294)
                      +.++++.+..-..+|+.+.+....
T Consensus        20 ~~~la~~L~~~Gh~V~v~t~~~~~   43 (364)
T cd03814          20 LQRLVEHLRARGHEVLVIAPGPFR   43 (364)
T ss_pred             HHHHHHHHHHCCCEEEEEECCCCC
T ss_conf             999999999779989999789976


No 33 
>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164   Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=75.38  E-value=4  Score=21.13  Aligned_cols=60  Identities=20%  Similarity=0.409  Sum_probs=32.7

Q ss_pred             HHHHHCC--CEEEEECCCCCCCCCCHHHHHH------HHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             4577529--7288722688640007899999------997620169718998278997999999998299
Q gi|254780537|r  196 YLAEDFG--FKSLYLWPINSDSERSPSMMRH------AINQMRSHKIKFIFSESTNSDQPAKQVAYETNA  257 (294)
Q Consensus       196 Y~~~~yG--l~~~~~~~~~~~~eps~~~l~~------~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~  257 (294)
                      |+++=||  ++.+  .-+++|.|.+=.-++-      -.+.|-+++.+.|+++.+|+.|+.-.|+..|.-
T Consensus        92 ~~t~LfgGk~~~v--L~mNTGaEAvEtA~KLAR~WgY~~K~ip~~kA~ii~~~GNFhGRTlgA~S~Std~  159 (426)
T TIGR01885        92 YLTKLFGGKYEKV--LPMNTGAEAVETALKLARKWGYEVKGIPRNKAKIIAASGNFHGRTLGAVSASTDS  159 (426)
T ss_pred             HHHHHCCCCCCEE--ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf             9997549951056--0456873479999999997441357855762389985388733035443202672


No 34 
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031   Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=74.57  E-value=5.6  Score=20.16  Aligned_cols=63  Identities=22%  Similarity=0.244  Sum_probs=51.6

Q ss_pred             HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC-EEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             57752972887226886400078999999976201697-1899827899799999999829934443
Q gi|254780537|r  197 LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKI-KFIFSESTNSDQPAKQVAYETNASYGGV  262 (294)
Q Consensus       197 ~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v-~~if~e~~~~~~~~~~ia~e~~~~~~~~  262 (294)
                      ++++||+..-.-.-. .+  -||..+.+..+..++.|+ ++|..--.-+..+-=.+|..|..|++++
T Consensus        20 ~L~~fgi~~e~~V~S-AH--RTP~~~~~ya~~a~~~G~P~ViIAgAGgaAHLPGmvAa~T~~PVIGV   83 (159)
T TIGR01162        20 ILEEFGIPYELRVVS-AH--RTPELMFEYAKEAEERGIPKVIIAGAGGAAHLPGMVAALTTLPVIGV   83 (159)
T ss_pred             HHHHCCCCEEEEEEC-CC--CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEC
T ss_conf             998559966789860-67--78088999999998678997998403511334010011478775503


No 35 
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of  galactose alpha-1,6 linkages in amylovoran.
Probab=74.20  E-value=4.6  Score=20.75  Aligned_cols=10  Identities=10%  Similarity=0.228  Sum_probs=5.5

Q ss_pred             CCCCEEEEEC
Q ss_conf             0378999988
Q gi|254780537|r   71 QNADLILCNG   80 (294)
Q Consensus        71 ~~Adliv~~G   80 (294)
                      .+.|+++.+.
T Consensus        82 ~~~Dvi~~~~   91 (348)
T cd03820          82 NKPDVVISFL   91 (348)
T ss_pred             CCCCEEEECC
T ss_conf             5999999989


No 36 
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular  matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=73.89  E-value=7.3  Score=19.39  Aligned_cols=123  Identities=18%  Similarity=0.130  Sum_probs=66.9

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCC---CCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCC----------------C
Q ss_conf             99989986301455337899886307---8447369982665214577529728872268864----------------0
Q gi|254780537|r  155 YELNAREYSEKIRNSILPLKTRIEKV---DPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSD----------------S  215 (294)
Q Consensus       155 y~~N~~~~~~~l~~l~~~~~~~~~~~---p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~----------------~  215 (294)
                      +..|...-..-+++|.+..- --..|   +..+|.+|..-||.-.+|-+=  +..++..++.+                .
T Consensus       199 iSgNlD~PEGGfDAlmQ~av-C~~~IGWR~~arrllVf~TDa~fH~AgDG--kL~GIv~PNDg~CHLd~~g~Yt~s~~~D  275 (423)
T smart00187      199 ISGNLDAPEGGFDAIMQAAV-CTEQIGWREDARRLLVFSTDAGFHFAGDG--KLAGIVQPNDGQCHLDNNGEYTMSTTQD  275 (423)
T ss_pred             CCCCCCCCCCCHHHHHHHHH-HCCCCCCCCCCEEEEEEECCCCCCCCCCC--CEEEEECCCCCCEEECCCCCCCCCCCCC
T ss_conf             63466887612778888875-20003765574389999837863023676--2443543788730327888524456567


Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             0078999999976201697189982789979999999982993444320123787778868999999999999986
Q gi|254780537|r  216 ERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVD  291 (294)
Q Consensus       216 eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~  291 (294)
                      =||   |.++.+.+++++|..||+-+.......+.|++......++.|..|        ..+-+++++...+.|..
T Consensus       276 YPS---i~ql~~kl~ennI~~IFAVT~~~~~~Y~~Ls~~ipgs~vg~L~~D--------SsNVv~LI~~aY~ki~S  340 (423)
T smart00187      276 YPS---IGQLNQKLAENNINPIFAVTKKQVSLYKELSALIPGSSVGVLSED--------SSNVVELIKDAYNKISS  340 (423)
T ss_pred             CCC---HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCC--------CHHHHHHHHHHHHHHCE
T ss_conf             887---899999998539327998522045699999875775403552457--------51389999999987501


No 37 
>PHA01735 hypothetical protein
Probab=73.50  E-value=2.9  Score=22.10  Aligned_cols=37  Identities=16%  Similarity=0.177  Sum_probs=29.6

Q ss_pred             CCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf             4000789999999762016971899827899799999
Q gi|254780537|r  214 DSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQ  250 (294)
Q Consensus       214 ~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~  250 (294)
                      ..|.|++++...++.+|+++|..+-+|.++=.+.++.
T Consensus        27 sGeAttaDL~aA~~~LKdN~I~gva~egsPL~~La~~   63 (76)
T PHA01735         27 SGEATTADLRAACDWLKSNDITGVAVDGSPLAKLAGL   63 (76)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHH
T ss_conf             7888799999999999987966236799869999875


No 38 
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=73.35  E-value=7.6  Score=19.30  Aligned_cols=32  Identities=16%  Similarity=0.018  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             64318889999998998630145533789988
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTR  176 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~  176 (294)
                      .-+.|.++-......+++.-+++.-.+.....
T Consensus       252 ~~lsP~~a~l~lrGL~TL~lRm~r~~~nA~~v  283 (406)
T PRK07810        252 PALSAFNAWTLLKGLETLAIRVQHSNASALRI  283 (406)
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf             98987888998706897999999999999999


No 39 
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems.  Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2).  MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster.  Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=72.36  E-value=8  Score=19.15  Aligned_cols=149  Identities=11%  Similarity=0.133  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC----HHHHHHCCC
Q ss_conf             2135678999999999864318889999998998630145533789988630784473699826652----145775297
Q gi|254780537|r  128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL----VYLAEDFGF  203 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af----~Y~~~~yGl  203 (294)
                      +-..+.......|++.+.+--|+.   ++..-..+...+    .+.+..+.    .+|..|...+.+    ..|..+.|+
T Consensus       259 ~G~~~Td~flr~l~~~~g~~~~~~---i~~er~r~~d~~----~d~~~~l~----gkrvai~g~~~~~~~l~~~l~elG~  327 (435)
T cd01974         259 IGVAATDEFLMALSELTGKPIPEE---LEEERGRLVDAM----TDSHQYLH----GKKFALYGDPDFLIGLTSFLLELGM  327 (435)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHH----HHHHHHHC----CCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf             456999999999999858994699---999999999999----99988742----9679998882899999999998899


Q ss_pred             EEEEECCCCCCCC--------------------CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE-
Q ss_conf             2887226886400--------------------0789999999762016971899827899799999999829934443-
Q gi|254780537|r  204 KSLYLWPINSDSE--------------------RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV-  262 (294)
Q Consensus       204 ~~~~~~~~~~~~e--------------------ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~-  262 (294)
                      +.+.+...+...+                    ....|+.++.+.+++.++..||.     +..-+.+|++.|++...+ 
T Consensus       328 ~~~~vv~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~D~~~l~~~i~~~~~dliig-----~s~~~~iA~~~giP~~~ig  402 (435)
T cd01974         328 EPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLLIG-----NTYGKYIARDTDIPLVRFG  402 (435)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCEEEE-----CCHHHHHHHHHCCCEEEEE
T ss_conf             78999979997789999999986256788867995899999999997559999994-----8078999998099979980


Q ss_pred             -EECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             -2012378777886899999999999998620
Q gi|254780537|r  263 -LYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       263 -~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                       ...|-++..-.+--.|-+. .+-++.|.++|
T Consensus       403 ~P~~dr~~~~~~~~~GY~G~-l~l~e~i~N~l  433 (435)
T cd01974         403 FPIFDRHHHHRFPIVGYEGA-LRLLTTILNTL  433 (435)
T ss_pred             CCEEECCCCCCCCCEEHHHH-HHHHHHHHHHH
T ss_conf             68034347656760317659-99999999985


No 40 
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=71.83  E-value=7.6  Score=19.28  Aligned_cols=20  Identities=5%  Similarity=-0.059  Sum_probs=8.4

Q ss_pred             HHHHHHHHCCCEEEEEEEEC
Q ss_conf             99999985189148999626
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTLVE   52 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~li~   52 (294)
                      +.++++.+..-..+|+.+.+
T Consensus        16 ~~~La~~L~~~Gh~V~vit~   35 (359)
T cd03808          16 RLPLIKALRAAGYEVHVVAP   35 (359)
T ss_pred             HHHHHHHHHHCCCEEEEEEE
T ss_conf             99999999976999999970


No 41 
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia.  This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent  nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having  alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=70.35  E-value=8.8  Score=18.85  Aligned_cols=149  Identities=13%  Similarity=0.106  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC----HHHHHHCCC
Q ss_conf             2135678999999999864318889999998998630145533789988630784473699826652----145775297
Q gi|254780537|r  128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL----VYLAEDFGF  203 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af----~Y~~~~yGl  203 (294)
                      +-+++.......|++.+.+-.|+.   ++.....+...+    .++...+.    .+|..|...+..    .-|..+.|+
T Consensus       255 ~G~~~T~~~l~~la~~~g~~~~~~---~~~er~r~~d~~----~d~~~~l~----gkrvai~~~~~~~~~l~~~L~elG~  323 (428)
T cd01965         255 IGLKATDEFLRALSKLSGKPIPEE---LERERGRLLDAM----LDSHFYLG----GKRVAIAGDPDLLLGLSRFLLEMGA  323 (428)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHH----HHHHHHCC----CCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             467999999999999848995599---999999999999----99998607----9789998881889999999998599


Q ss_pred             EEEEECCCCCC------------------CCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE--E
Q ss_conf             28872268864------------------000789999999762016971899827899799999999829934443--2
Q gi|254780537|r  204 KSLYLWPINSD------------------SERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV--L  263 (294)
Q Consensus       204 ~~~~~~~~~~~------------------~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~--~  263 (294)
                      +.+.+......                  ......|+.++.+.+++.+...||..     ..-+.+|++.+++.+.+  .
T Consensus       324 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~v~~~~D~~~le~~i~~~~~dliig~-----s~~~~~A~~l~iP~~~~g~P  398 (428)
T cd01965         324 EPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEEPVDLLIGN-----SHGRYLARDLGIPLVRVGFP  398 (428)
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEEEC-----HHHHHHHHHCCCCEEEECCC
T ss_conf             5679998179924778899876650799639976999999999974799999978-----57899999859987994177


Q ss_pred             ECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             012378777886899999999999998620
Q gi|254780537|r  264 YVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       264 ~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      ..|-++....+--.|-+. .+-++.|.++|
T Consensus       399 v~dr~~~~~~~~~GY~G~-l~l~~~i~Nal  427 (428)
T cd01965         399 IFDRLGLHRRPYVGYRGA-LNLLEEIANTL  427 (428)
T ss_pred             CEEEECCCCCCEEEHHHH-HHHHHHHHHHH
T ss_conf             044106667751318889-99999999963


No 42 
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478   This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances  and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=70.03  E-value=4.4  Score=20.85  Aligned_cols=172  Identities=14%  Similarity=0.156  Sum_probs=109.1

Q ss_pred             ECHHHHHHHHHHCC-CEEEE-------------EEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCC-C--HHHHHHH
Q ss_conf             75289999998518-91489-------------996268898012022712457760378999988761-0--6899999
Q gi|254780537|r   29 SFSIIGDITQNIAK-DLVTV-------------TTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHL-E--ETYMKYF   91 (294)
Q Consensus        29 s~~pl~~iv~~I~g-d~v~V-------------~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~-E--~~~~~~~   91 (294)
                      ..|.++-||+++-| ++||-             ...+..|.+       ..+...|.+||++|..|.+= |  |=+...+
T Consensus       112 e~Y~~QKlAR~~~GTNNvD~CAR~CH~Ps~~gL~~~~G~GA~-------s~~~~~ie~a~~ivi~G~N~~esHPvv~~~l  184 (694)
T TIGR01591       112 ENYLLQKLARAVLGTNNVDNCARVCHEPSVAGLKQTVGIGAM-------SNTISDIENADLIVIIGANPAESHPVVASKL  184 (694)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCC-------CCCCHHHHCCCEEEEECCCCCCCCHHHHHHH
T ss_conf             678999999998503774554540378789999976245533-------5520344327758997567655543689999


Q ss_pred             HHCC--CCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCHH
Q ss_conf             7423--5575211123742022210012334630111221356789999999998643188899999989--98630145
Q gi|254780537|r   92 TNLK--KGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNA--REYSEKIR  167 (294)
Q Consensus        92 ~~~~--~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~--~~~~~~l~  167 (294)
                      .++.  ++.++|.+    +++...---..|-..|-|+=+.|=.-+.++.++++.|++--=.++++.++|.  +.|.+   
T Consensus       185 ~~AKk~nGaKiiV~----DpR~t~taksahi~AD~~i~~k~GTdial~na~a~viI~egL~Dk~Fi~~R~~W~~F~E---  257 (694)
T TIGR01591       185 MRAKKRNGAKIIVI----DPRKTETAKSAHIIADLFIPLKPGTDIALLNAVANVIIEEGLYDKEFIEKRTDWEGFEE---  257 (694)
T ss_pred             HHHHHHCCCEEEEE----CCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHEEECCCCCCHHHHHHHCCCCCHHH---
T ss_conf             99985089789997----58886023221110110651799708999973200242278616688975148785378---


Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf             53378998863078447369982665214577529728872268864000789999999762016971899827899
Q gi|254780537|r  168 NSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNS  244 (294)
Q Consensus       168 ~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~  244 (294)
                           ++..++.                    .|-++.+  ..+   ...++..|+++.+.+-+.+--+|++--+.+
T Consensus       258 -----~r~~V~~--------------------~yTpE~v--E~I---TgV~~d~Ir~~A~~yA~a~~~Ai~wGlGvT  304 (694)
T TIGR01591       258 -----FREIVKG--------------------KYTPEYV--EKI---TGVPADLIREIARMYAKAGSAAILWGLGVT  304 (694)
T ss_pred             -----HHHHHCC--------------------CCCHHHC--CCC---CCCCHHHHHHHHHHHHCCCCEEEEECCCCE
T ss_conf             -----8877504--------------------7875322--212---578888999999998358967999555020


No 43 
>PRK11058 putative GTPase HflX; Provisional
Probab=69.87  E-value=9  Score=18.79  Aligned_cols=73  Identities=12%  Similarity=0.190  Sum_probs=38.4

Q ss_pred             EECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHH-----HHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             97528999999851891489996268898012022712-----4577603789999887610689999974235575211
Q gi|254780537|r   28 SSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSA-----DAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIIT  102 (294)
Q Consensus        28 ~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~-----d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~  102 (294)
                      .+..-+..+++..|.+-+....--...-||-.|==+=+     ++.+-.+||++|.++ ++.|.=.+.++..- +.++++
T Consensus        25 e~l~El~~L~~tag~evv~~~~q~r~~p~p~~~iG~GK~~El~~~~~~~~~d~vifd~-~Lsp~Q~rnLe~~~-~~~V~D  102 (426)
T PRK11058         25 EDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDH-ALSPAQERNLERLC-ECRVID  102 (426)
T ss_pred             CCHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEECHHHHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHH-CCEEEC
T ss_conf             0299999999978997999999943899753102320999999999964989999999-89989999999986-992880


No 44 
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=69.42  E-value=9.2  Score=18.73  Aligned_cols=19  Identities=11%  Similarity=0.146  Sum_probs=9.3

Q ss_pred             HHHHHHHHCCCEEEEEEEE
Q ss_conf             9999998518914899962
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTLV   51 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~li   51 (294)
                      ...+++.++.-..+|+.+.
T Consensus        27 v~~La~~L~~~GH~V~V~t   45 (398)
T cd03800          27 VLELARALARLGHEVDIFT   45 (398)
T ss_pred             HHHHHHHHHHCCCEEEEEE
T ss_conf             9999999998699699997


No 45 
>pfam00362 Integrin_beta Integrin, beta chain. Integrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer. The sequences repeats have been trimmed due to an overlap with EGF.
Probab=68.96  E-value=9.4  Score=18.66  Aligned_cols=64  Identities=22%  Similarity=0.253  Sum_probs=45.4

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             078999999976201697189982789979999999982993444320123787778868999999999999986
Q gi|254780537|r  217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVD  291 (294)
Q Consensus       217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~  291 (294)
                      ||   +.++.+.+++++|..||+=....-...+.|++......++.|..|        ..+-+++++..++.|..
T Consensus       278 PS---v~ql~~kl~ennI~~IFAVt~~~~~~Y~~Ls~~i~gs~vg~L~~D--------SsNIv~LI~~aY~ki~S  341 (424)
T pfam00362       278 PS---VGQLAEKLSENNINPIFAVTENVVDLYKELSELIPGSTVGVLSSD--------SSNVVQLIKDAYNKISS  341 (424)
T ss_pred             CC---HHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEECCC--------CHHHHHHHHHHHHHHHE
T ss_conf             88---899999998649259999750245899999975776525662467--------50289999999987522


No 46 
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=68.58  E-value=9.6  Score=18.61  Aligned_cols=72  Identities=11%  Similarity=0.094  Sum_probs=51.3

Q ss_pred             HCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             30145533789988630784473699826652145775297288722688640007899999997620169718998
Q gi|254780537|r  163 SEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFS  239 (294)
Q Consensus       163 ~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~  239 (294)
                      --.|.+|.  ++.....+|..=..+|+.|+-+..++++||+....+.-   +.+..+++-+++.+.+++.++..|.-
T Consensus       101 ~HCL~DLL--~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~---~~~~k~e~E~~~~~ll~~~~~DlvVL  172 (287)
T COG0788         101 DHCLGDLL--YRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPV---TKENKAEAEARLLELLEEYGADLVVL  172 (287)
T ss_pred             HHHHHHHH--HHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCEEECCC---CCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             77799999--99761886872589974877889999974998665467---87753478999999999859987820


No 47 
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=68.32  E-value=9.7  Score=18.58  Aligned_cols=18  Identities=11%  Similarity=0.159  Sum_probs=7.7

Q ss_pred             HHHHHHHHCCCEEEEEEE
Q ss_conf             999999851891489996
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTL   50 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~l   50 (294)
                      ...+++.++....+|+.+
T Consensus        18 v~~La~~L~~~GHeV~vi   35 (371)
T cd04962          18 ATELGKALARRGHEVHFI   35 (371)
T ss_pred             HHHHHHHHHHCCCEEEEE
T ss_conf             999999999759999999


No 48 
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=67.60  E-value=10  Score=18.48  Aligned_cols=74  Identities=12%  Similarity=0.116  Sum_probs=34.6

Q ss_pred             CCCEEEEECCCC-----HHHHHHCCCEEEEECCCCCC-CCCC-------------HHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             473699826652-----14577529728872268864-0007-------------8999999976201697189982789
Q gi|254780537|r  183 EKRWFVTSEGCL-----VYLAEDFGFKSLYLWPINSD-SERS-------------PSMMRHAINQMRSHKIKFIFSESTN  243 (294)
Q Consensus       183 ~~~~~v~~H~af-----~Y~~~~yGl~~~~~~~~~~~-~eps-------------~~~l~~~~~~ik~~~v~~if~e~~~  243 (294)
                      .+|.||.....+     .++.++.|++++++-.-..+ .+.-             -.|-.++.+.|.+.....||     
T Consensus       302 gkr~fVfgd~ThA~~~~~~l~~EmG~~v~~~gty~r~~a~~~r~~~~~~~~e~litdD~~eV~~~I~~~~P~~vf-----  376 (510)
T CHL00076        302 GKKAVVFGDATHAASITKILSREMGIRVVCAGTYCKHDAEWFREQVQGFCDEILITDDHTEVGDMIARIEPSAIF-----  376 (510)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHC-----
T ss_conf             644899806259999999877762842354124215555999999984486325506489999999871982312-----


Q ss_pred             CHHHHHHHHHHHCCCEEE
Q ss_conf             979999999982993444
Q gi|254780537|r  244 SDQPAKQVAYETNASYGG  261 (294)
Q Consensus       244 ~~~~~~~ia~e~~~~~~~  261 (294)
                      ....=+-+++..+++-.+
T Consensus       377 GTqmERh~~krl~IPc~v  394 (510)
T CHL00076        377 GTQMERHIGKRLDIPCGV  394 (510)
T ss_pred             CHHHHHHHHHHCCCCCCC
T ss_conf             448887766640887567


No 49 
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=66.81  E-value=10  Score=18.38  Aligned_cols=81  Identities=17%  Similarity=0.321  Sum_probs=41.2

Q ss_pred             CCCCCEEEEECHH--------HHHHHHHHCCCEEEEEEEECCCC----CCCC-----CCCCHHHHHHHCCCCEEEEECCC
Q ss_conf             3588289997528--------99999985189148999626889----8012-----02271245776037899998876
Q gi|254780537|r   20 TTQKKVVLSSFSI--------IGDITQNIAKDLVTVTTLVEAGN----DSHS-----YQVTSADAIKIQNADLILCNGLH   82 (294)
Q Consensus        20 ~~~~~~Vv~s~~p--------l~~iv~~I~gd~v~V~~li~~g~----dpH~-----ye~tp~d~~~i~~Adliv~~G~~   82 (294)
                      .+++|.|++--..        +..|++..+-.-  +++....|.    +|..     +.-++.....+++||+++..|..
T Consensus       230 ~AkrPvIl~G~G~~~~~a~~~l~~Lae~l~iPV--~tt~~gkg~~pe~hpl~~G~~G~~g~~~a~~~l~~aDlvL~iG~r  307 (612)
T PRK07789        230 AARRPVLYVGGGVIRAEASEELRELAELTGIPV--VTTLMARGAFPDSHPQNLGMPGMHGTVAAVAALQRSDLLIALGAR  307 (612)
T ss_pred             HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCE--EEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHCCCCEEEEECCC
T ss_conf             279968998977134658999999999619978--983057688998880104777777888999765058868886255


Q ss_pred             CCHHHHHHHHHCCCCCCCCC
Q ss_conf             10689999974235575211
Q gi|254780537|r   83 LEETYMKYFTNLKKGTKIIT  102 (294)
Q Consensus        83 ~E~~~~~~~~~~~~~~~~i~  102 (294)
                      |..+.........++.++|.
T Consensus       308 l~~~~tg~~~~~~p~~kvI~  327 (612)
T PRK07789        308 FDDRVTGKLDSFAPDAKVIH  327 (612)
T ss_pred             CCCCCCCCCCCCCCCCEEEE
T ss_conf             67555687343599873899


No 50 
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=66.79  E-value=6.8  Score=19.63  Aligned_cols=48  Identities=13%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEE--EECCCCHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf             00789999999762016971899--82789979999999982993444320123
Q gi|254780537|r  216 ERSPSMMRHAINQMRSHKIKFIF--SESTNSDQPAKQVAYETNASYGGVLYVDS  267 (294)
Q Consensus       216 eps~~~l~~~~~~ik~~~v~~if--~e~~~~~~~~~~ia~e~~~~~~~~~~~d~  267 (294)
                      .||...+...++.+|+++|..|+  .|+..+.+..+    ..|+.+....|-|+
T Consensus        27 ~Pt~~~l~~yi~elkk~~Vt~vVRvCe~tYd~~~~e----~~GI~v~D~~FdDG   76 (172)
T PTZ00242         27 APSPSNLPLYIKELQRRNVRHLVRVCGPTYDAELLE----KNGIEVHEWPFDDG   76 (172)
T ss_pred             CCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH----HCCCEEEECCCCCC
T ss_conf             998032999999999769909998177665856887----67956987677899


No 51 
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549   This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=66.68  E-value=9.2  Score=18.72  Aligned_cols=86  Identities=12%  Similarity=0.055  Sum_probs=55.1

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEE------EEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC-CC-
Q ss_conf             998863078447369982665214577529728------8722688640007899999997620169718998278-99-
Q gi|254780537|r  173 LKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKS------LYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSEST-NS-  244 (294)
Q Consensus       173 ~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~------~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~-~~-  244 (294)
                      +-+.++.....+  .-.-||.||.|++.-.|=.      +...|++++.=...-|-...++.+|+-+|++|=-... .. 
T Consensus        63 IpnI~aAA~~tG--~~AiHPGYGFLSENA~FAe~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS~GP~~~  140 (451)
T TIGR00514        63 IPNIIAAAEITG--ADAIHPGYGFLSENADFAEICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGSDGPLVE  140 (451)
T ss_pred             HHHHHHHHHHCC--CCEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCC
T ss_conf             588999887748--807628877344312478898738826667871201126886899999974887662388886310


Q ss_pred             -HHHHHHHHHHHCCCEE
Q ss_conf             -7999999998299344
Q gi|254780537|r  245 -DQPAKQVAYETNASYG  260 (294)
Q Consensus       245 -~~~~~~ia~e~~~~~~  260 (294)
                       -.-...||++.|=|++
T Consensus       141 ~~~e~~~~A~~IGyPv~  157 (451)
T TIGR00514       141 DEEEAVRIAKEIGYPVI  157 (451)
T ss_pred             CHHHHHHHHHHCCCCEE
T ss_conf             27889999974789689


No 52 
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=66.65  E-value=10  Score=18.36  Aligned_cols=41  Identities=15%  Similarity=0.292  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             899999997620169718-99827899799999999829934443
Q gi|254780537|r  219 PSMMRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGV  262 (294)
Q Consensus       219 ~~~l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~  262 (294)
                      ...|+.+++.+++.+|++ +|.+|  ..+.++. |+++|+..+++
T Consensus       109 ~~~L~~~i~~lk~~~IrvSLFIDP--d~~qi~~-a~~~Gad~VEl  150 (234)
T cd00003         109 AEKLKPIIERLKDAGIRVSLFIDP--DPEQIEA-AKEVGADRVEL  150 (234)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECC--CHHHHHH-HHHHCCCEEEE
T ss_conf             889999999998659827997279--8789999-99849399998


No 53 
>TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=66.64  E-value=6.1  Score=19.93  Aligned_cols=31  Identities=13%  Similarity=0.162  Sum_probs=21.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCEEEEECH
Q ss_conf             9269999999998604643358828999752
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQKKVVLSSFS   31 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~   31 (294)
                      |||+|+++++++++.+|+....+-.|-+.-.
T Consensus         1 Mkk~~~~~~~~~~~~SCg~~~~GELvGv~~~   31 (449)
T TIGR03525         1 MKKYLVFAALVVLVYSCGSGDKGELVGVEGK   31 (449)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf             9124899999998721058997138731487


No 54 
>TIGR01511 ATPase-IB1_Cu copper-translocating P-type ATPase; InterPro: IPR006403   ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , .  F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP.   P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2.   This entry represents P-type ATPases that specialise in cation and copper transport; those transporting copper (3.6.3.4 from EC) have been classified as belonging to the IB subfamily , , . These proteins are involved in a variety of processes in both prokaryotes and eukaryotes. Some of these P-ATPases import copper into cells, such as in Arabidopsis sp., which require copper to create functional hormone receptors for ethylene signalling. Other P-ATPases are involved in copper export out of cells, such as occurs with the efflux of hepatic copper into the bile in eukaryotes. In bacteria, some of these P-ATPases play a role in osmotic adaptation. Certain copper ATPases have been implicated in both Wilson and Menkes diseases .   More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0004008 copper-exporting ATPase activity, 0005524 ATP binding, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=66.46  E-value=11  Score=18.33  Aligned_cols=39  Identities=18%  Similarity=0.239  Sum_probs=32.0

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf             9999997620169718998278997999999998299344
Q gi|254780537|r  221 MMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG  260 (294)
Q Consensus       221 ~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~  260 (294)
                      +=+++++.+|+.||.++. =++.|++.++.+|++.|+++.
T Consensus       375 ~a~~~i~~Lk~~Gi~~~m-LtGDN~~~A~a~A~~lGI~v~  413 (545)
T TIGR01511       375 EAKEVIQALKRRGIEPVM-LTGDNRKTAKAVAKELGINVR  413 (545)
T ss_pred             HHHHHHHHHHHCCCEEEE-EECCCHHHHHHHHHHHCCEEE
T ss_conf             689999999875987999-866987999999997283333


No 55 
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=66.33  E-value=11  Score=18.32  Aligned_cols=21  Identities=24%  Similarity=0.412  Sum_probs=15.9

Q ss_pred             CCCCHHHHH----HHCCCCEEEEEC
Q ss_conf             022712457----760378999988
Q gi|254780537|r   60 YQVTSADAI----KIQNADLILCNG   80 (294)
Q Consensus        60 ye~tp~d~~----~i~~Adliv~~G   80 (294)
                      +...|+.++    .|++|.-|||||
T Consensus       294 lDIGp~Ti~~~~~~I~~a~TI~WNG  318 (653)
T PRK13962        294 LDIGPETVELFKEKLSDAKTIVWNG  318 (653)
T ss_pred             ECCCHHHHHHHHHHHHHCCEEEEEC
T ss_conf             4688999999999997799999978


No 56 
>PRK08462 biotin carboxylase; Validated
Probab=66.28  E-value=9.1  Score=18.75  Aligned_cols=12  Identities=42%  Similarity=0.437  Sum_probs=4.5

Q ss_pred             HCCCCEEEEECCC
Q ss_conf             6037899998876
Q gi|254780537|r   70 IQNADLILCNGLH   82 (294)
Q Consensus        70 i~~Adliv~~G~~   82 (294)
                      ..++|.+ +=|.|
T Consensus        74 ~~~~dAi-hPGyG   85 (446)
T PRK08462         74 IFEADAI-FPGYG   85 (446)
T ss_pred             HHCCCEE-ECCCH
T ss_conf             9591989-86820


No 57 
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235   This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=65.40  E-value=11  Score=18.20  Aligned_cols=61  Identities=10%  Similarity=0.090  Sum_probs=38.1

Q ss_pred             CCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHH-------HHHHHHHHH--CCCEE
Q ss_conf             66521457752972887226886400078999999976201697189982789979-------999999982--99344
Q gi|254780537|r  191 EGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQ-------PAKQVAYET--NASYG  260 (294)
Q Consensus       191 H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~-------~~~~ia~e~--~~~~~  260 (294)
                      ++=|.|-.+++|+++..+..-    + .   +.++.+.|+ .+=|+||.|+.-||+       .+..||++.  +|+.+
T Consensus       110 ynLF~~TlkrlGIevrFvd~d----d-~---pe~~~k~id-~nTKAvf~EtIgNP~~~v~Die~~a~~Ah~~PhgvPli  179 (434)
T TIGR01326       110 YNLFKHTLKRLGIEVRFVDGD----D-D---PEELEKAID-ENTKAVFAETIGNPALNVPDIEAVAEVAHAHPHGVPLI  179 (434)
T ss_pred             HHHHHHHHHHCCEEEEEECCC----C-C---HHHHHHHCC-CCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf             789999555448148872788----8-8---789997606-67518984012387767678589999998678983488


No 58 
>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.
Probab=64.75  E-value=11  Score=18.12  Aligned_cols=46  Identities=13%  Similarity=0.197  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             899999997620169718-99827899799999999829934443201237
Q gi|254780537|r  219 PSMMRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGVLYVDSL  268 (294)
Q Consensus       219 ~~~l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l  268 (294)
                      ...|+.+++.+++.++++ +|.+|  +.+.++. |+++|+..+++ ++.+.
T Consensus       110 ~~~L~~~i~~lk~~girvSlFIDp--d~~~i~~-a~~~Gad~VEl-hTG~Y  156 (239)
T pfam03740       110 LEKLKPAIRRLKNAGIRVSLFIDP--DPEQIEA-AKIVGADRIEL-HTGPY  156 (239)
T ss_pred             HHHHHHHHHHHHCCCCEEEEEECC--CHHHHHH-HHHCCCCEEEE-ECHHH
T ss_conf             689999999986078538997079--9899999-99809299985-04778


No 59 
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=64.53  E-value=11  Score=18.09  Aligned_cols=19  Identities=26%  Similarity=0.312  Sum_probs=8.9

Q ss_pred             HHHHHHHCCCEEEEEEEEC
Q ss_conf             9999985189148999626
Q gi|254780537|r   34 GDITQNIAKDLVTVTTLVE   52 (294)
Q Consensus        34 ~~iv~~I~gd~v~V~~li~   52 (294)
                      ..+++.+.....+|+.+.+
T Consensus        22 ~~la~~L~~~Gh~V~v~~~   40 (359)
T cd03823          22 HDLAEALAKRGHEVAVLTA   40 (359)
T ss_pred             HHHHHHHHHCCCEEEEEEC
T ss_conf             9999999977998999955


No 60 
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487   ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent  molecular chaperone and is the regulatory subunit of the ClpXP protease .   ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates .    The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA .  ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=64.44  E-value=11  Score=18.08  Aligned_cols=61  Identities=13%  Similarity=0.109  Sum_probs=34.3

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCCHH--HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf             078999999976201697189982789979--999999982993444320123787778868999999
Q gi|254780537|r  217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQ--PAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLL  282 (294)
Q Consensus       217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~--~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m  282 (294)
                      ....++.++.  +.+.||  ++..|.=|.|  +|++||+..++|+.--.- -+|++.|+-|.|=..++
T Consensus       140 velehleeVE--L~KSNI--LLiGPTGSGKTLLAqTLA~~L~VPfAiADA-TtLTEAGYVGEDVENIL  202 (452)
T TIGR00382       140 VELEHLEEVE--LSKSNI--LLIGPTGSGKTLLAQTLARILNVPFAIADA-TTLTEAGYVGEDVENIL  202 (452)
T ss_pred             HHHHHHHHHH--HHCCCE--EEECCCCCCHHHHHHHHHHHCCCCEEECCH-HHHHCCCCCCCCHHHHH
T ss_conf             2354444433--300662--454688852689999999873887421111-10200664242288999


No 61 
>pfam11897 DUF3417 Protein of unknown function (DUF3417). This family of proteins are functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are typically between 145 to 860 amino acids in length. This protein is found associated with pfam00343. This protein has a conserved AYF sequence motif.
Probab=64.37  E-value=5.4  Score=20.28  Aligned_cols=74  Identities=18%  Similarity=0.364  Sum_probs=37.0

Q ss_pred             CCHHHHHHH-HHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHH
Q ss_conf             301112213-5678999999999-8--64318889999998998630145533789988630784473699826652145
Q gi|254780537|r  122 PNPHAWMSL-TNAMIYIENIRKA-L--TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYL  197 (294)
Q Consensus       122 ~dpH~Wldp-~~~~~~a~~I~~~-L--~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~  197 (294)
                      .||..|-.. .|-+.+...+... |  ...||+--..|++=.+.|.+-+.. ..++...-   +.      ...+...||
T Consensus        40 iDp~lW~~~~hNPv~~L~~v~~~rL~~la~D~~f~~~~~~v~~~~~~Yl~~-~~w~~~~~---~~------~~~~~VAYF  109 (119)
T pfam11897        40 LDPELWEETGHNPVRLLGEVSQERLEELAADPEFLARYDRVAADFDEYLSA-PTWFQRNP---GD------EGPRPIAYF  109 (119)
T ss_pred             HCHHHHHHCCCCHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCC---CC------CCCCCEEEE
T ss_conf             699999876899799998689999999956999999999999999999868-86432357---77------899956997


Q ss_pred             HHHCCCEE
Q ss_conf             77529728
Q gi|254780537|r  198 AEDFGFKS  205 (294)
Q Consensus       198 ~~~yGl~~  205 (294)
                      +-+|||..
T Consensus       110 S~EfGlhe  117 (119)
T pfam11897       110 SMEFGLHE  117 (119)
T ss_pred             CCCCCCCC
T ss_conf             10304433


No 62 
>KOG0202 consensus
Probab=64.33  E-value=12  Score=18.07  Aligned_cols=108  Identities=16%  Similarity=0.111  Sum_probs=65.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHH
Q ss_conf             8643188899999989986301-455337899886307844736998266521457752972887226886400078999
Q gi|254780537|r  144 LTALDPSNAKKYELNAREYSEK-IRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMM  222 (294)
Q Consensus       144 L~~~dP~~~~~y~~N~~~~~~~-l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l  222 (294)
                      ...+++..++.+.++..++-.+ |.-|--..+......|..    .-.-+.-.|-.-+-+|..+++.|+.   +|.-.++
T Consensus       517 ~~pLt~~~re~il~~~~~~g~~gLRvLalA~~~~~~~~~~~----~~l~~~s~~~~~E~~LtFvGlVGi~---DPPR~ev  589 (972)
T KOG0202         517 KVPLTQASRETILANVYEMGSEGLRVLALASKDSPGQVPDD----QDLNDTSNRATAESDLTFVGLVGIL---DPPRPEV  589 (972)
T ss_pred             EEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHH----HHHCCCCCCCCCCCCEEEEEEEECC---CCCCHHH
T ss_conf             54475888999999999873333369999746877667023----4312543211112543899874246---8996568


Q ss_pred             HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCE
Q ss_conf             9999762016971899827899799999999829934
Q gi|254780537|r  223 RHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASY  259 (294)
Q Consensus       223 ~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~  259 (294)
                      ++.++...+.||+++. -++.+...+++|+++.|+..
T Consensus       590 ~~ai~~c~~aGIrV~m-ITGD~~~TA~AI~r~iGi~~  625 (972)
T KOG0202         590 ADAIELCRQAGIRVIM-ITGDNKETAEAIAREIGIFS  625 (972)
T ss_pred             HHHHHHHHHCCCEEEE-ECCCCHHHHHHHHHHHCCCC
T ss_conf             9999999973977999-83898789999999839876


No 63 
>KOG0553 consensus
Probab=64.09  E-value=6  Score=19.96  Aligned_cols=48  Identities=31%  Similarity=0.394  Sum_probs=29.1

Q ss_pred             CCCHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf             630111221----------35678999999999864318889999998998630145533
Q gi|254780537|r  121 EPNPHAWMS----------LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSI  170 (294)
Q Consensus       121 ~~dpH~Wld----------p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~  170 (294)
                      ..|||.|=.          -......++.-.++| ++||+|+ .|..|++....++.+..
T Consensus       143 ~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaL-eldP~Ne-~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553         143 SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL-ELDPDNE-SYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHHHCCCC
T ss_conf             6290899999998799980673799999997643-1688848-99988999998724787


No 64 
>PRK07798 acyl-CoA synthetase; Validated
Probab=64.04  E-value=12  Score=18.03  Aligned_cols=18  Identities=11%  Similarity=0.043  Sum_probs=6.5

Q ss_pred             CEEEEECHHHHHHHHHHC
Q ss_conf             289997528999999851
Q gi|254780537|r   24 KVVLSSFSIIGDITQNIA   41 (294)
Q Consensus        24 ~~Vv~s~~pl~~iv~~I~   41 (294)
                      ++++.+..-+...+.++.
T Consensus       101 ~~~~i~~~~~~~~~~~~~  118 (532)
T PRK07798        101 AVALVYHREFAPRVAEVL  118 (532)
T ss_pred             CCEEEECHHHHHHHHHHH
T ss_conf             849997533678999887


No 65 
>KOG1111 consensus
Probab=63.76  E-value=8.2  Score=19.05  Aligned_cols=67  Identities=18%  Similarity=0.295  Sum_probs=40.0

Q ss_pred             EEEECCCCCCCCCCCCHHHHHHHCCCC--------EEEEE-CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf             996268898012022712457760378--------99998-87610689999974235575211123742022210012
Q gi|254780537|r   48 TTLVEAGNDSHSYQVTSADAIKIQNAD--------LILCN-GLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTS  117 (294)
Q Consensus        48 ~~li~~g~dpH~ye~tp~d~~~i~~Ad--------liv~~-G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~  117 (294)
                      .+.+|.-.++|+|.|-+.+   -.++|        =.+|+ |.++=--+.+.+-+..++...+-++||=+.+...+.-.
T Consensus       171 vsvIPnAv~~~~f~P~~~~---~~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lE  246 (426)
T KOG1111         171 VSVIPNAVVTHTFTPDAAD---KPSADIITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLE  246 (426)
T ss_pred             EEECCCEEECCCCCCCCCC---CCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH
T ss_conf             5533523540334658434---688870699997411112426789999999973598736999568865021999999


No 66 
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=63.57  E-value=12  Score=17.97  Aligned_cols=29  Identities=21%  Similarity=0.145  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             64318889999998998630145533789
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPL  173 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~  173 (294)
                      .-+.|.++-......+++.-+++.-.+..
T Consensus       279 ~~lsP~da~L~lRGL~TL~lRm~r~~~nA  307 (436)
T PRK07812        279 SAASPFNAFLIAQGLETLSLRIERHVANA  307 (436)
T ss_pred             CCCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf             13580777898736683899999999999


No 67 
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=62.40  E-value=12  Score=17.84  Aligned_cols=83  Identities=7%  Similarity=-0.026  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECC------CCHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf             643188899999989986301455337899886307844736998266------52145775297288722688640007
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEG------CLVYLAEDFGFKSLYLWPINSDSERS  218 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~------af~Y~~~~yGl~~~~~~~~~~~~eps  218 (294)
                      .-+.|.++-......+++.-+++.-.+.......-+....+.--+.||      -+..+.+.++ ..-++..+  +-..+
T Consensus       219 ~~~sp~~a~l~lrgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~-g~ggl~sf--~l~~~  295 (369)
T cd00614         219 TILSPFDAWLLLRGLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMS-GYGGVFSF--ELKGG  295 (369)
T ss_pred             CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCC-CCCEEEEE--EECCC
T ss_conf             7689788899886017599999999999999999997199988797878988804899997689-99717799--97698


Q ss_pred             HHHHHHHHHHHC
Q ss_conf             899999997620
Q gi|254780537|r  219 PSMMRHAINQMR  230 (294)
Q Consensus       219 ~~~l~~~~~~ik  230 (294)
                      .....++.+.++
T Consensus       296 ~~~~~~f~~~l~  307 (369)
T cd00614         296 LEAAKKFLNALK  307 (369)
T ss_pred             HHHHHHHHHHCC
T ss_conf             999999998589


No 68 
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=62.11  E-value=7.2  Score=19.45  Aligned_cols=21  Identities=14%  Similarity=0.286  Sum_probs=14.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCCC
Q ss_conf             926999999999860464335
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATT   21 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~   21 (294)
                      |||++++++++++++++|++.
T Consensus         1 mm~~~l~~~~~~~~L~GC~~~   21 (238)
T PRK12696          1 MIRKLLAASCAVLLLSGCNAA   21 (238)
T ss_pred             CHHHHHHHHHHHHHHHCCCCC
T ss_conf             958999999999995165688


No 69 
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782    This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=61.75  E-value=13  Score=17.76  Aligned_cols=56  Identities=13%  Similarity=0.189  Sum_probs=48.0

Q ss_pred             HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             775297288722688640007899999997620169718998278997999999998299
Q gi|254780537|r  198 AEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNA  257 (294)
Q Consensus       198 ~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~  257 (294)
                      -++-+|..+|+.|+   .+|.-.+++..++.-++-||++|.. ++.+..+|++|+++.|+
T Consensus       450 ~~Es~Ltf~G~vGl---~DPPR~EV~~ai~~CR~AGIrVImI-TGD~KeTA~AicR~IG~  505 (800)
T TIGR01116       450 KEESKLTFIGVVGL---LDPPRPEVADAIEKCREAGIRVIMI-TGDNKETAEAICRRIGI  505 (800)
T ss_pred             CCCCCCEEEEEEEC---CCCCCHHHHHHHHHHHHCCCEEEEE-ECCCCHHHHHHHHHHHH
T ss_conf             14678678888506---8948168999999887379789998-47982468999767501


No 70 
>PTZ00333 triosephosphate isomerase; Provisional
Probab=61.57  E-value=13  Score=17.74  Aligned_cols=59  Identities=8%  Similarity=0.206  Sum_probs=44.3

Q ss_pred             CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----------CCEEEEEECCCCHHHHHHHH
Q ss_conf             7369982665214577529728872268864000789999999762016-----------97189982789979999999
Q gi|254780537|r  184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-----------KIKFIFSESTNSDQPAKQVA  252 (294)
Q Consensus       184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-----------~v~~if~e~~~~~~~~~~ia  252 (294)
                      ++.+++|.|.|.               +..|..|||.++.++.+.||+.           +++. ++....+++-++.+.
T Consensus       161 ~~iiIAYEPvWA---------------IGTG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~I-LYGGSVn~~Na~~i~  224 (252)
T PTZ00333        161 DKVVIAYEPVWA---------------IGTGKVATPEQAQEVHAFIRKWLSEKVGADVAKKVRI-IYGGSVNEKNCHELI  224 (252)
T ss_pred             HCEEEEECCHHH---------------CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCE-EEECCCCHHHHHHHH
T ss_conf             241899667653---------------5889999999999999999999998718545067748-872777999999996


Q ss_pred             HHHCCC
Q ss_conf             982993
Q gi|254780537|r  253 YETNAS  258 (294)
Q Consensus       253 ~e~~~~  258 (294)
                      +.-++.
T Consensus       225 ~~~~vD  230 (252)
T PTZ00333        225 KQPDID  230 (252)
T ss_pred             CCCCCC
T ss_conf             688999


No 71 
>COG2262 HflX GTPases [General function prediction only]
Probab=61.28  E-value=13  Score=17.71  Aligned_cols=128  Identities=13%  Similarity=0.215  Sum_probs=61.8

Q ss_pred             ECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC--HHHH---HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             75289999998518914899962688980120227--1245---776037899998876106899999742355752111
Q gi|254780537|r   29 SFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVT--SADA---IKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITV  103 (294)
Q Consensus        29 s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~t--p~d~---~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~  103 (294)
                      +.--+..+++..+++-+....-....-||-.|==+  ..++   ....+||++|.++ .+.|.=...+... -+.+||+=
T Consensus        21 ~leEl~~La~tag~~v~~~~~q~r~~pdp~~~iG~GK~eEi~~~v~~~~ad~VIf~~-~LsP~Q~~NLe~~-l~~kVIDR   98 (411)
T COG2262          21 SLEELAELAETAGYEVVEVVTQKRERPDPKTYIGSGKLEEIAEAVEETGADLVIFDH-ELSPSQLRNLEKE-LGVKVIDR   98 (411)
T ss_pred             HHHHHHHHHHHCCCEEEEEEEEECCCCCCCEECCCCHHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHH-HCCEEEEH
T ss_conf             299999999975976816678712589963000765599999999843999999999-6898899999999-79889841


Q ss_pred             CCCCCH---------------------------------HH-HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             237420---------------------------------22-21001233463011122135678999999999864318
Q gi|254780537|r  104 TDGINP---------------------------------IG-VSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDP  149 (294)
Q Consensus       104 ~~~i~~---------------------------------~~-~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP  149 (294)
                      ...|-.                                 +. .+++...-|-...-+=.|-...+.-...|...|.+..-
T Consensus        99 t~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~  178 (411)
T COG2262          99 TQLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRGPGETQLETDRRRIRRRIAKLKRELENVEK  178 (411)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             86999999977404135544428755323067675541200116777788987127788899999999999999999998


Q ss_pred             HHHHHHHHH
Q ss_conf             889999998
Q gi|254780537|r  150 SNAKKYELN  158 (294)
Q Consensus       150 ~~~~~y~~N  158 (294)
                      ..+..-+++
T Consensus       179 ~R~~~R~~R  187 (411)
T COG2262         179 AREPRRKKR  187 (411)
T ss_pred             HHHHHHHHH
T ss_conf             788876533


No 72 
>PRK11627 hypothetical protein; Provisional
Probab=61.23  E-value=11  Score=18.25  Aligned_cols=20  Identities=25%  Similarity=0.381  Sum_probs=11.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCC
Q ss_conf             92699999999986046433
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASAT   20 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~   20 (294)
                      |||++++.+++++++++|++
T Consensus         1 ~mkk~~~~l~a~~lL~gCas   20 (192)
T PRK11627          1 MLKKILFPLVALFMLAGCAT   20 (192)
T ss_pred             CHHHHHHHHHHHHHHHHHCC
T ss_conf             92879999999999986069


No 73 
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=61.22  E-value=13  Score=17.70  Aligned_cols=41  Identities=17%  Similarity=0.269  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             899999997620169718-99827899799999999829934443
Q gi|254780537|r  219 PSMMRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGV  262 (294)
Q Consensus       219 ~~~l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~  262 (294)
                      ...|+.+++.+++.+|++ +|.+|  +.+.++ .|+++|+..+++
T Consensus       112 ~~~L~~~i~~lk~~gIrvSLFiDP--d~~~i~-~a~~~Gad~VEl  153 (240)
T PRK05265        112 FDKLKPAIARLKDAGIRVSLFIDP--DPEQIE-AAAEVGADRIEL  153 (240)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECC--CHHHHH-HHHHHCCCEEEE
T ss_conf             899999999998659817997279--878999-999849399998


No 74 
>PRK10780 periplasmic chaperone; Provisional
Probab=61.07  E-value=5.6  Score=20.20  Aligned_cols=34  Identities=9%  Similarity=0.181  Sum_probs=22.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHH
Q ss_conf             9269999999998604643358828999752899
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIG   34 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~   34 (294)
                      |||++++++|++.+..+..++.|+-||-+-..+.
T Consensus         1 mKk~l~~~~l~l~l~~~a~Aa~KIgvVd~~~i~~   34 (161)
T PRK10780          1 MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQ   34 (161)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHH
T ss_conf             9589999999998588887753545532999998


No 75 
>PRK11411 fecB iron-dicitrate transporter substrate-binding subunit; Provisional
Probab=60.79  E-value=13  Score=17.65  Aligned_cols=70  Identities=14%  Similarity=0.046  Sum_probs=33.3

Q ss_pred             CCCCHHHHHHCCCEEEEEC-CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH-----HC-CCEEEEE
Q ss_conf             6652145775297288722-688640007899999997620169718998278997999999998-----29-9344432
Q gi|254780537|r  191 EGCLVYLAEDFGFKSLYLW-PINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYE-----TN-ASYGGVL  263 (294)
Q Consensus       191 H~af~Y~~~~yGl~~~~~~-~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e-----~~-~~~~~~~  263 (294)
                      +.-.+.+.+..|++..... .-.+..+.|.       +.+.+.+..+||.-....+...+.+.+.     +. +|-..+.
T Consensus       195 ~s~~g~il~~lG~~~~~~~~~~~~~~~iS~-------E~l~~~dpD~I~v~~~~~~~~~~~~~~~p~w~~l~AVKn~~V~  267 (297)
T PRK11411        195 ESYAGSVLAALGLQVPIAAMNGAPMPSISL-------EQLLALNPDWLLVAHYREESIVKRWQQDPLWQMLTAAQKQQVA  267 (297)
T ss_pred             CCHHHHHHHHCCCCCCCCCCCCCCCCCCCH-------HHHHCCCCCEEEEEECCCHHHHHHHHCCHHHHCCCEEECCCEE
T ss_conf             841799999839987876557887641079-------9984049998999947872688877539055409843479489


Q ss_pred             ECCC
Q ss_conf             0123
Q gi|254780537|r  264 YVDS  267 (294)
Q Consensus       264 ~~d~  267 (294)
                      .+|+
T Consensus       268 ~vd~  271 (297)
T PRK11411        268 EVDS  271 (297)
T ss_pred             EECH
T ss_conf             9882


No 76 
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=59.70  E-value=14  Score=17.53  Aligned_cols=10  Identities=20%  Similarity=0.082  Sum_probs=4.3

Q ss_pred             CCCHHHHHHH
Q ss_conf             0078999999
Q gi|254780537|r  216 ERSPSMMRHA  225 (294)
Q Consensus       216 eps~~~l~~~  225 (294)
                      -.++.++.++
T Consensus       623 rV~l~EVE~~  632 (719)
T PRK08043        623 MVSLEMVEQL  632 (719)
T ss_pred             EECHHHHHHH
T ss_conf             9998999999


No 77 
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=59.59  E-value=14  Score=17.51  Aligned_cols=60  Identities=12%  Similarity=0.160  Sum_probs=41.4

Q ss_pred             CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC----------CCEEEEEECCCCHHHHHHHH
Q ss_conf             47369982665214577529728872268864000789999999762016----------97189982789979999999
Q gi|254780537|r  183 EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH----------KIKFIFSESTNSDQPAKQVA  252 (294)
Q Consensus       183 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~----------~v~~if~e~~~~~~~~~~ia  252 (294)
                      .++.+++|.|.|.               +..+..||+.++.++...|++.          ++++ ++....+++-++.+.
T Consensus       154 ~~~~iIAYEPvWA---------------IGtG~~as~~~i~ev~~~Ir~~l~~~~~~~~~~v~i-LYGGSV~~~N~~~i~  217 (242)
T cd00311         154 LAPVVIAYEPVWA---------------IGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRI-LYGGSVNPENAAELL  217 (242)
T ss_pred             HCCEEEEECCHHH---------------CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCE-EECCCCCHHHHHHHH
T ss_conf             0360999776886---------------189999999999999999999999862020367548-960778988999995


Q ss_pred             HHHCCC
Q ss_conf             982993
Q gi|254780537|r  253 YETNAS  258 (294)
Q Consensus       253 ~e~~~~  258 (294)
                      +.-++.
T Consensus       218 ~~~~vd  223 (242)
T cd00311         218 AQPDID  223 (242)
T ss_pred             CCCCCC
T ss_conf             689999


No 78 
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=59.48  E-value=13  Score=17.78  Aligned_cols=20  Identities=5%  Similarity=0.091  Sum_probs=11.2

Q ss_pred             CCCCCHHHHHHHHHHHCCCC
Q ss_conf             40007899999997620169
Q gi|254780537|r  214 DSERSPSMMRHAINQMRSHK  233 (294)
Q Consensus       214 ~~eps~~~l~~~~~~ik~~~  233 (294)
                      +..-+-.+|+++++.+++.+
T Consensus       149 ~~g~~F~~L~eii~~~~~~~  168 (280)
T COG0648         149 GKGTQFGELAEIIDLIEEKE  168 (280)
T ss_pred             CCCCCHHHHHHHHHHHCCCC
T ss_conf             65642241999998633657


No 79 
>PRK10270 hypothetical protein; Provisional
Probab=59.47  E-value=5.7  Score=20.14  Aligned_cols=15  Identities=13%  Similarity=0.408  Sum_probs=9.0

Q ss_pred             CHHHHHHHHHHHHHC
Q ss_conf             926999999999860
Q gi|254780537|r    1 MLRYFICLLFSYIPM   15 (294)
Q Consensus         1 M~r~~~~l~~~~~~~   15 (294)
                      |||.+++++++++++
T Consensus         1 Mkk~~~~~~~l~~~l   15 (340)
T PRK10270          1 MKKVLLIILLLLVVL   15 (340)
T ss_pred             CCHHHHHHHHHHHHH
T ss_conf             902899999999999


No 80 
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=59.47  E-value=14  Score=17.50  Aligned_cols=19  Identities=21%  Similarity=0.160  Sum_probs=10.8

Q ss_pred             HHHHHHHHCCCEEEEEEEE
Q ss_conf             9999998518914899962
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTLV   51 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~li   51 (294)
                      ...+++.+.....+|+.+.
T Consensus        20 ~~~la~~L~~~Gh~V~v~t   38 (375)
T cd03821          20 VLNLSKALAKLGHEVTVAT   38 (375)
T ss_pred             HHHHHHHHHHCCCEEEEEE
T ss_conf             9999999997799899997


No 81 
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems.  Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2).  MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster.  Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=59.06  E-value=14  Score=17.45  Aligned_cols=146  Identities=11%  Similarity=0.015  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEE--CCCC--HHHHHHCC
Q ss_conf             21356789999999998643188899-9999899863014553378998863078447369982--6652--14577529
Q gi|254780537|r  128 MSLTNAMIYIENIRKALTALDPSNAK-KYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTS--EGCL--VYLAEDFG  202 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L~~~dP~~~~-~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~--H~af--~Y~~~~yG  202 (294)
                      +-+.+.......|++.+.+--++.++ .+.+..+.+..    ..+.++.+++    .+|.++..  ..++  --.++++|
T Consensus       252 ~Gi~~T~~~Lr~IA~~fG~el~~~~E~lI~~e~~~~~~----~l~~yr~~L~----GKrv~i~~Gg~~~~~~i~~~~eLG  323 (421)
T cd01976         252 FGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEA----VIAKYRPRLE----GKTVMLYVGGLRPRHYIGAYEDLG  323 (421)
T ss_pred             CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCC----CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             58799999999999985908889999999999999999----9999998708----988999899874689999999879


Q ss_pred             CEEEEECC-CCCC-----------------CCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf             72887226-8864-----------------00078999999976201697189982789979999999982993444320
Q gi|254780537|r  203 FKSLYLWP-INSD-----------------SERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLY  264 (294)
Q Consensus       203 l~~~~~~~-~~~~-----------------~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~  264 (294)
                      ++++++-. ..++                 .++++   .++.+.|++.+...++.- .-.    +-++...|++...+..
T Consensus       324 mevV~~g~~~~~~~Dye~~~~~~~~~~~iidd~~~---~Ele~~i~~~~pDl~l~g-~ke----r~ia~K~gIP~~~~~~  395 (421)
T cd01976         324 MEVVGTGYEFAHRDDYERTEVIPKEGTLLYDDVTH---YELEEFVKRLKPDLIGSG-IKE----KYVFQKMGIPFRQMHS  395 (421)
T ss_pred             CEEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCH---HHHHHHHHHCCCCEEEEC-CCC----CHHEEECCCCEEECCC
T ss_conf             88999731227476799998508988289727999---999999985399999954-762----0200444888576688


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             123787778868999999999999986209
Q gi|254780537|r  265 VDSLSKPDGPAPTYLDLLRFSLTKIVDTLF  294 (294)
Q Consensus       265 ~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL~  294 (294)
                      -|   ..+ +=-.|.+++ +-...|..+||
T Consensus       396 ~~---~~~-pyaGy~G~v-~far~i~~~i~  420 (421)
T cd01976         396 WD---YSG-PYHGFDGFA-IFARDMDMAIN  420 (421)
T ss_pred             CC---CCC-CCCCHHHHH-HHHHHHHHHHC
T ss_conf             66---577-764476799-99999999852


No 82 
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=58.94  E-value=14  Score=17.44  Aligned_cols=50  Identities=14%  Similarity=-0.031  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             64318889999998998630145533789988630784473699826652
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL  194 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af  194 (294)
                      .-+.|.++-......+++.-+++.-.+.......-+....+.--++||.+
T Consensus       240 ~~lsP~~a~l~lrGL~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgL  289 (391)
T PRK08133        240 PTLSPFNAWVFLKGLETLSLRMEAHSANALELAEWLEAHPGVERVFYPGL  289 (391)
T ss_pred             CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf             88893277898604776999999999999999999970999147989999


No 83 
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=58.21  E-value=15  Score=17.36  Aligned_cols=11  Identities=18%  Similarity=0.111  Sum_probs=5.0

Q ss_pred             CCCCEEEEECC
Q ss_conf             03789999887
Q gi|254780537|r   71 QNADLILCNGL   81 (294)
Q Consensus        71 ~~Adliv~~G~   81 (294)
                      ++|.+||..|.
T Consensus       229 ~~a~VIVl~~~  239 (452)
T cd06362         229 PNARVVVLFCR  239 (452)
T ss_pred             CCCEEEEEEEC
T ss_conf             99879999953


No 84 
>KOG2836 consensus
Probab=58.02  E-value=14  Score=17.46  Aligned_cols=29  Identities=10%  Similarity=0.236  Sum_probs=13.3

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEE--EECCCCH
Q ss_conf             0789999999762016971899--8278997
Q gi|254780537|r  217 RSPSMMRHAINQMRSHKIKFIF--SESTNSD  245 (294)
Q Consensus       217 ps~~~l~~~~~~ik~~~v~~if--~e~~~~~  245 (294)
                      |+-+.|..+++.+|++|+..+.  .|+..+.
T Consensus        25 PtnaTln~fieELkKygvttvVRVCe~TYdt   55 (173)
T KOG2836          25 PTNATLNKFIEELKKYGVTTVVRVCEPTYDT   55 (173)
T ss_pred             CCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf             8711499999999963972899951464676


No 85 
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=57.87  E-value=15  Score=17.32  Aligned_cols=139  Identities=10%  Similarity=0.127  Sum_probs=63.3

Q ss_pred             CHHHHHHHHHHCCC-EEEEEEEECCCCCCCC--------CCCCHHHHHHHCCCCEEEEECCCCC---HHHH-HHHHHCC-
Q ss_conf             52899999985189-1489996268898012--------0227124577603789999887610---6899-9997423-
Q gi|254780537|r   30 FSIIGDITQNIAKD-LVTVTTLVEAGNDSHS--------YQVTSADAIKIQNADLILCNGLHLE---ETYM-KYFTNLK-   95 (294)
Q Consensus        30 ~~pl~~iv~~I~gd-~v~V~~li~~g~dpH~--------ye~tp~d~~~i~~Adliv~~G~~~E---~~~~-~~~~~~~-   95 (294)
                      .|-++-+++++-|. +|+--+=.  -+.|..        +-.....+..|.+||+++.+|.+--   |-+. ++..... 
T Consensus       371 ~Yl~QKLaR~v~gtNNVDncsR~--CqsPa~~gL~rTvG~g~dsgsi~dve~ad~vliIG~N~te~HPV~asr~kra~k~  448 (978)
T COG3383         371 NYLMQKLARQVFGTNNVDNCSRY--CQSPATDGLFRTVGSGADSGSIEDVEGADLVLIIGANPTEGHPVLASRLKRAHKL  448 (978)
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHH--CCCCCCCCCHHEEECCCCCCCHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf             99999999997446885320110--0686446403105436778888888507759997678776685089999999984


Q ss_pred             CCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCHHHHHHH
Q ss_conf             557521112374202221001233463011122135678999999999864318889999998---99863014553378
Q gi|254780537|r   96 KGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELN---AREYSEKIRNSILP  172 (294)
Q Consensus        96 ~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N---~~~~~~~l~~l~~~  172 (294)
                      .+.++|.+.-.-..+..+.        |-|+-.-|-.-.....+++..++...=..+.+++++   ++.|.+-|....-+
T Consensus       449 ~G~KliV~D~R~~emaerA--------dlf~~pkpGtd~a~l~AvakyiideGl~D~~Fi~er~~~f~d~~~~l~~~tle  520 (978)
T COG3383         449 RGQKLIVIDPRKHEMAERA--------DLFLHPKPGTDLAWLTAVAKYIIDEGLHDEAFIRERVDWFEDYAKSLAPFTLE  520 (978)
T ss_pred             CCCEEEEECCCHHHHHHHH--------HCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCHH
T ss_conf             5974999536366777755--------30058999964899999999998078514789986444399999875103887


Q ss_pred             HHHHHH
Q ss_conf             998863
Q gi|254780537|r  173 LKTRIE  178 (294)
Q Consensus       173 ~~~~~~  178 (294)
                      +...+.
T Consensus       521 ~~E~~T  526 (978)
T COG3383         521 YAEKAT  526 (978)
T ss_pred             HHHHHC
T ss_conf             877640


No 86 
>pfam10673 DUF2487 Protein of unknown function (DUF2487). This is a bacterial family of uncharacterized proteins.
Probab=57.60  E-value=15  Score=17.29  Aligned_cols=97  Identities=13%  Similarity=0.219  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf             33789988630784473699826652145775297288722688640007899999997620169718998278997999
Q gi|254780537|r  169 SILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPA  248 (294)
Q Consensus       169 l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~  248 (294)
                      +..+...++     ++|.+  .-|+|.|+..             +..+-...+|++..+.+++.|.+.||+=+  +....
T Consensus        40 la~ElERQl-----kGRv~--L~P~ftY~~~-------------~~~~~~~~rL~~w~~~l~~~Gf~HV~~vT--sD~~W   97 (143)
T pfam10673        40 LAEELERQL-----KGRVL--LLPAFTYLAS-------------EQKDEAGERLKEWTNALKEEGFRHVFFLT--SDSSW   97 (143)
T ss_pred             HHHHHHHHH-----CCCEE--ECCCEEEECC-------------CCHHHHHHHHHHHHHHHHHCCCCEEEEEE--CCHHH
T ss_conf             999999986-----67478--4278031045-------------66678999999999999975984699995--57134


Q ss_pred             HHHHHHHCCCEEEE--EECCCCCCCCCCCCCH-HHHHHHHHHHHHHHC
Q ss_conf             99999829934443--2012378777886899-999999999998620
Q gi|254780537|r  249 KQVAYETNASYGGV--LYVDSLSKPDGPAPTY-LDLLRFSLTKIVDTL  293 (294)
Q Consensus       249 ~~ia~e~~~~~~~~--~~~d~l~~~~~~~~~Y-~~~m~~N~~~l~~aL  293 (294)
                      +....+++....-+  ++++.+..      +| -++++..+..|.+.|
T Consensus        98 k~~~~~~~~~l~wlPaipLe~m~~------~~k~~ii~~qv~qll~~l  139 (143)
T pfam10673        98 KEEEEELEGDLFWLPAIPLEHMSD------SLKRKIVDDQVKQLLNLL  139 (143)
T ss_pred             HHCCCCCCCEEEEEECCCHHHHCH------HHHHHHHHHHHHHHHHHH
T ss_conf             331146676089950677566099------899999999999999999


No 87 
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=56.83  E-value=15  Score=17.21  Aligned_cols=76  Identities=21%  Similarity=0.204  Sum_probs=53.8

Q ss_pred             HHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf             9999985189148999626889801202271245776037899998--8761068999997423557521112374202
Q gi|254780537|r   34 GDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCN--GLHLEETYMKYFTNLKKGTKIITVTDGINPI  110 (294)
Q Consensus        34 ~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~--G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~  110 (294)
                      .+++.+|--++.++.+| |.-..|.....++.-...+++||++|..  ...+..++.++.....++..++.++.|+.+.
T Consensus        34 ~~~~~~i~~~~~N~~yL-p~i~lp~~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~  111 (329)
T COG0240          34 EEIVAEINETRENPKYL-PGILLPPNLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPE  111 (329)
T ss_pred             HHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf             99999997347670105-9962886322246899997229999997875789999998764336787499974465588


No 88 
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=56.36  E-value=16  Score=17.16  Aligned_cols=32  Identities=6%  Similarity=-0.032  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             64318889999998998630145533789988
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTR  176 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~  176 (294)
                      .-+.|..+-......+++.-+++.-.+.....
T Consensus       237 ~~~sP~~a~l~lrGL~TL~lRm~~~~~nA~~l  268 (386)
T PRK07811        237 AVPGPFDAYLTMRGLKTLAVRMDRHSENAEAV  268 (386)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87885788899865736999999999999999


No 89 
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=56.23  E-value=16  Score=17.14  Aligned_cols=39  Identities=10%  Similarity=0.080  Sum_probs=17.5

Q ss_pred             HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf             776037899998876106899999742355752111237420
Q gi|254780537|r   68 IKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINP  109 (294)
Q Consensus        68 ~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~  109 (294)
                      +.+..||.++..+..+-..   ++...-+..++..+..|++.
T Consensus       138 ~l~~~a~~iI~vS~~~~~~---l~~~G~~~~ki~vi~~GvD~  176 (367)
T cd05844         138 RLARRAALFIAVSQFIRDR---LLALGFPPEKVHVHPIGVDT  176 (367)
T ss_pred             HHHHHCCEEEECCHHHHHH---HHHCCCCHHHEEEECCCCCH
T ss_conf             9997269999699999999---99859897899997786367


No 90 
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=56.20  E-value=16  Score=17.14  Aligned_cols=126  Identities=15%  Similarity=0.168  Sum_probs=59.5

Q ss_pred             CCCEEEEECHHHHHHHHHHCC-----CEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf             882899975289999998518-----914899962688980120227124577603789999887610689999974235
Q gi|254780537|r   22 QKKVVLSSFSIIGDITQNIAK-----DLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKK   96 (294)
Q Consensus        22 ~~~~Vv~s~~pl~~iv~~I~g-----d~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~   96 (294)
                      .+++|.+|..|-+.+.+.+..     ...++...-=.+     |- .|.  .+|.+-|+= .|-....|+++...+....
T Consensus        29 ~~I~vg~~~~p~a~ile~~~k~~~~k~Gi~l~i~~FtD-----Y~-~PN--~AL~~gdiD-aN~FQH~pyL~~~~k~~~~   99 (268)
T COG1464          29 KTIKVGATPGPHAEILEVVVKPALKKKGLDLKIVEFTD-----YV-QPN--EALADGDID-ANAFQHKPYLDQFNKEHGG   99 (268)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECC-----CC-CHH--HHHHCCCCC-CHHHHCHHHHHHHHHHCCC
T ss_conf             71799636896599999998778885596599998148-----76-655--787668846-0012146889999997399


Q ss_pred             CCCCCCCCC-CCCHHH----------HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH-----HHHHHHHHH
Q ss_conf             575211123-742022----------2100123346301112213567899999999-98643188-----899999989
Q gi|254780537|r   97 GTKIITVTD-GINPIG----------VSEDTSVDSEPNPHAWMSLTNAMIYIENIRK-ALTALDPS-----NAKKYELNA  159 (294)
Q Consensus        97 ~~~~i~~~~-~i~~~~----------~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~-~L~~~dP~-----~~~~y~~N~  159 (294)
                      .  ++.++. .+.++.          .-.++..=.-+     -||.|-.+....+.+ .|+++.+.     ....+.+|-
T Consensus       100 ~--Lv~vg~~~i~Pmg~YSkk~ksl~el~~GatIaiP-----NDpsN~gRAL~lL~~aGLIkLk~~~~~~aT~~DI~eNP  172 (268)
T COG1464         100 K--LVAVGNTHIEPMGLYSKKYKSLAELKDGATIAIP-----NDPTNEGRALLLLQKAGLIKLKDGVNLLATPKDITENP  172 (268)
T ss_pred             C--EEEEEEEEECCCEECCHHCCCHHHCCCCCEEECC-----CCCCCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHCC
T ss_conf             7--8987557761425012200868467999989887-----89873567999999879679768876558887886194


Q ss_pred             HHHH
Q ss_conf             9863
Q gi|254780537|r  160 REYS  163 (294)
Q Consensus       160 ~~~~  163 (294)
                      +.+.
T Consensus       173 K~lk  176 (268)
T COG1464         173 KNLK  176 (268)
T ss_pred             CCCE
T ss_conf             4575


No 91 
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=55.56  E-value=16  Score=17.07  Aligned_cols=28  Identities=14%  Similarity=0.190  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             6431888999999899863014553378
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILP  172 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~  172 (294)
                      .-+.|.++-......+++.-+++.-.+.
T Consensus       275 ~~lsp~da~L~lRGL~TL~lRm~r~~~n  302 (433)
T PRK08134        275 ACLSPMNAWQLLQGIETLPLRMERHVAN  302 (433)
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             6668367799873677689999999987


No 92 
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390   ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs.   ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain .    The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , .   The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , .   Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1).  This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=54.61  E-value=17  Score=16.97  Aligned_cols=84  Identities=12%  Similarity=0.203  Sum_probs=53.5

Q ss_pred             CCCEEEEECCCC--------HHHHHHCCCEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCEEEEEEC----CCCHHHHH
Q ss_conf             473699826652--------14577529728872268864-000789999999762016971899827----89979999
Q gi|254780537|r  183 EKRWFVTSEGCL--------VYLAEDFGFKSLYLWPINSD-SERSPSMMRHAINQMRSHKIKFIFSES----TNSDQPAK  249 (294)
Q Consensus       183 ~~~~~v~~H~af--------~Y~~~~yGl~~~~~~~~~~~-~eps~~~l~~~~~~ik~~~v~~if~e~----~~~~~~~~  249 (294)
                      +++.+++.=|.|        +.|++|.|..++.-   +++ ++| ++=+-..++..|..|+.++++++    +....+++
T Consensus       110 Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~---~~gn~DP-AaV~fDAi~~Ak~~niDvvliDTAGRLqnk~NLm~  185 (284)
T TIGR00064       110 GKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQ---KEGNADP-AAVIFDAIQAAKARNIDVVLIDTAGRLQNKVNLMD  185 (284)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEC---CCCCCCC-HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
T ss_conf             9908998275247999999999898838755407---8898871-78999989999874997899734754546620399


Q ss_pred             HHHH-------HH--CCCEEEEEECCCCCC
Q ss_conf             9999-------82--993444320123787
Q gi|254780537|r  250 QVAY-------ET--NASYGGVLYVDSLSK  270 (294)
Q Consensus       250 ~ia~-------e~--~~~~~~~~~~d~l~~  270 (294)
                      .|.|       ..  ++|...++.+|+.+.
T Consensus       186 EL~KI~RV~~k~~~~~aP~e~lLVlDAt~G  215 (284)
T TIGR00064       186 ELKKIKRVIKKVDPVDAPDEVLLVLDATTG  215 (284)
T ss_pred             HHHHHHHHHHHHHCCCCCCEEEEEEHHHHH
T ss_conf             999999987321025787557542202220


No 93 
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=53.80  E-value=17  Score=16.89  Aligned_cols=17  Identities=18%  Similarity=0.143  Sum_probs=9.8

Q ss_pred             HHHHCCCCEEEEECCCC
Q ss_conf             57760378999988761
Q gi|254780537|r   67 AIKIQNADLILCNGLHL   83 (294)
Q Consensus        67 ~~~i~~Adliv~~G~~~   83 (294)
                      ...+..||.++......
T Consensus       125 ~~~~~~ad~ii~vS~~~  141 (355)
T cd03799         125 DEKLARADFVVAISEYN  141 (355)
T ss_pred             HHHHHHCCEEEECCHHH
T ss_conf             99998399999989999


No 94 
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia.  Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent  nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having  alpha and beta subunits similar to the alpha and beta subunits of MoFe.  The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=52.99  E-value=18  Score=16.80  Aligned_cols=147  Identities=12%  Similarity=0.102  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH----HHHHHCCC
Q ss_conf             21356789999999998643188899999989986301455337899886307844736998266521----45775297
Q gi|254780537|r  128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV----YLAEDFGF  203 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~----Y~~~~yGl  203 (294)
                      +-+.+.......|++.+....+ -.+.+++....+...++.    ++..+.    .+|.++...+.+.    -|.++.|+
T Consensus       240 iG~~~T~~fl~~la~~~g~~~~-~e~~i~~e~~~~~~~l~~----~~~~l~----Gkrv~i~~~~~~~~~~~~~l~ElG~  310 (406)
T cd01967         240 YGFEDTSESLRKIAKFFGDEEK-AEEVIAEEEARIKPELEK----YRERLK----GKKVIIYTGGARSWHVIAALRELGM  310 (406)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHH----HHHHHC----CCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             7789999999999998599600-689999999999999999----999836----9759997685468999999998899


Q ss_pred             EEEEECCCCCCCC---------------CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             2887226886400---------------0789999999762016971899827899799999999829934443201237
Q gi|254780537|r  204 KSLYLWPINSDSE---------------RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSL  268 (294)
Q Consensus       204 ~~~~~~~~~~~~e---------------ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l  268 (294)
                      +++.+.......+               ....+..++.+.+++.++..|+..+     .-+.+++..|+|...+..    
T Consensus       311 evv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~e~~~~~~~~~pDllig~s-----~~~~~a~~lgiP~~d~~~----  381 (406)
T cd01967         311 EVVAAGYEFGHDDDYERIRKILDEGTLLVDDYNDLELEELVEKLKPDLILSGI-----KEKYVAQKLGIPFLDLHS----  381 (406)
T ss_pred             EEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEEECC-----CCHHHHHHCCCCEEEEEC----
T ss_conf             69998744788028899986368877576069989999998307999999787-----434889982998899626----


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             87778868999999999999986209
Q gi|254780537|r  269 SKPDGPAPTYLDLLRFSLTKIVDTLF  294 (294)
Q Consensus       269 ~~~~~~~~~Y~~~m~~N~~~l~~aL~  294 (294)
                       .-..+--.|-+++ .-++.|.++|+
T Consensus       382 -~~~~~~~GY~G~~-~l~~~i~nal~  405 (406)
T cd01967         382 -ERNGPYAGYEGFL-NFARDIDTALN  405 (406)
T ss_pred             -CCCCCEEEHHHHH-HHHHHHHHHHC
T ss_conf             -7678536567899-99999999863


No 95 
>PRK00031 lolA outer-membrane lipoprotein carrier protein; Reviewed
Probab=52.32  E-value=8.9  Score=18.83  Aligned_cols=21  Identities=24%  Similarity=0.300  Sum_probs=14.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCCC
Q ss_conf             926999999999860464335
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATT   21 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~   21 (294)
                      |||++++++++++++++.+.+
T Consensus         1 mk~~~~~~~~~~~l~~~~~~A   21 (201)
T PRK00031          1 MKKLLIAALLAAALVASSAFA   21 (201)
T ss_pred             CCHHHHHHHHHHHHHHHHHCC
T ss_conf             915999999999987766450


No 96 
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=52.12  E-value=1.8  Score=23.53  Aligned_cols=31  Identities=26%  Similarity=0.232  Sum_probs=22.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2334630111221356789999999998643188
Q gi|254780537|r  117 SVDSEPNPHAWMSLTNAMIYIENIRKALTALDPS  150 (294)
Q Consensus       117 ~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~  150 (294)
                      ...++-|||+  ||.++..++.-|+++- .+.++
T Consensus       124 aSgSGLDPhI--S~~aA~~Qv~RVA~ar-gls~~  154 (195)
T PRK00315        124 ASGSGLDPHI--SPAAAAYQIPRVAAAR-QLPVE  154 (195)
T ss_pred             CCCCCCCCCC--CHHHHHHHHHHHHHHH-CCCHH
T ss_conf             7756689998--9999999999999983-95999


No 97 
>pfam01591 6PF2K 6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif.
Probab=52.09  E-value=18  Score=16.71  Aligned_cols=39  Identities=13%  Similarity=0.264  Sum_probs=28.6

Q ss_pred             EEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf             887226886400078999999976201697189982789979
Q gi|254780537|r  205 SLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQ  246 (294)
Q Consensus       205 ~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~  246 (294)
                      ++++..   ..-.|.++=+.+.+.+++.+++++|.|..-+.+
T Consensus        98 ~VaI~D---ATN~T~~RR~~i~~~~~~~~~~vlFiEsic~D~  136 (223)
T pfam01591        98 QVAIFD---ATNTTRERRKNILDFAEENGLKVFFLESICDDP  136 (223)
T ss_pred             EEEEEE---CCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCH
T ss_conf             299996---887689999999999986697499999973888


No 98 
>pfam01053 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.
Probab=52.08  E-value=18  Score=16.71  Aligned_cols=31  Identities=10%  Similarity=0.006  Sum_probs=21.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             6431888999999899863014553378998
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKT  175 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~  175 (294)
                      .-+.|..+-....+.+++.-+++.-.+....
T Consensus       232 ~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~  262 (381)
T pfam01053       232 AVLSPFDAWLLLRGLKTLGLRMERHQENALK  262 (381)
T ss_pred             CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             8788688899871478799999998889999


No 99 
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=51.11  E-value=19  Score=16.61  Aligned_cols=34  Identities=9%  Similarity=0.052  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             6431888999999899863014553378998863
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIE  178 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~  178 (294)
                      ..+.|.++-......+++.-+++.-.+.......
T Consensus       228 ~~l~p~~a~ll~rGL~TL~lR~~~~~~nA~~vA~  261 (379)
T PRK06176        228 GVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAE  261 (379)
T ss_pred             CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             7778467899972225289999999999999999


No 100
>PRK02991 D-serine dehydratase; Provisional
Probab=50.96  E-value=19  Score=16.59  Aligned_cols=85  Identities=18%  Similarity=0.216  Sum_probs=53.2

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             89988630784473699826652145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r  172 PLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV  251 (294)
Q Consensus       172 ~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i  251 (294)
                      ..+.+++.   .+..+=..||-|-|+=  .|            .--+|.-++.=.+.+=...|.|+|+||..++-..-.+
T Consensus       253 RLk~Ql~~---~gi~Vd~~hPLfVYLP--CG------------VGG~PGGVafGLK~~fGd~VhcfFaEPthsPcmllg~  315 (443)
T PRK02991        253 RLKAQLAE---QGIVVDADHPLFVYLP--CG------------VGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGV  315 (443)
T ss_pred             HHHHHHHH---CCCCCCCCCCEEEEEC--CC------------CCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
T ss_conf             99999997---5985279997079953--78------------8877057888689871584389984787567899998


Q ss_pred             HHHHCCCEEEE-EECCCCCCCCC
Q ss_conf             99829934443-20123787778
Q gi|254780537|r  252 AYETNASYGGV-LYVDSLSKPDG  273 (294)
Q Consensus       252 a~e~~~~~~~~-~~~d~l~~~~~  273 (294)
                      +....-++.+. +-+|+.+..++
T Consensus       316 ~Tglhd~isV~D~Gldn~T~ADG  338 (443)
T PRK02991        316 MTGLHDQISVQDIGIDNRTAADG  338 (443)
T ss_pred             HHCCCCCCCEEECCCCCCCCCCC
T ss_conf             64789998532127777645566


No 101
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=50.94  E-value=19  Score=16.59  Aligned_cols=16  Identities=6%  Similarity=0.052  Sum_probs=8.1

Q ss_pred             CCCCCHHHHHHHHHHH
Q ss_conf             4000789999999762
Q gi|254780537|r  214 DSERSPSMMRHAINQM  229 (294)
Q Consensus       214 ~~eps~~~l~~~~~~i  229 (294)
                      |.-.++.++.++....
T Consensus      1039 GerVel~EVE~~l~~~ 1054 (1139)
T PRK06814       1039 GEMISLTAVEELASEL 1054 (1139)
T ss_pred             CEEECHHHHHHHHHHC
T ss_conf             9998889999999848


No 102
>PRK00549 competence damage-inducible protein A; Provisional
Probab=50.91  E-value=19  Score=16.59  Aligned_cols=55  Identities=22%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHH
Q ss_conf             9999998518914899962688980120227124577603789999887610689999
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKY   90 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~   90 (294)
                      -.++++++..-.++|...+--+.++....  ..-...+.++|++|.+| |+-|.-+++
T Consensus        22 ~~~la~~L~~~G~~v~~~~tv~D~~~~i~--~~l~~a~~r~d~vi~tG-GLGPT~DDl   76 (413)
T PRK00549         22 AQFLSEKLAELGIDVYHQTVVGDNPERLL--SALEIAEERSDLIITTG-GLGPTKDDL   76 (413)
T ss_pred             HHHHHHHHHHCCCCEEEEEEECCCHHHHH--HHHHHHHHCCCEEEEEC-CCCCCCCHH
T ss_conf             99999999977981889999389899999--99999974599999908-848998445


No 103
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=50.74  E-value=17  Score=16.89  Aligned_cols=29  Identities=24%  Similarity=0.252  Sum_probs=13.6

Q ss_pred             CHHHHHHHHH---HHHHCCCCC-CCCCCEEEEE
Q ss_conf             9269999999---998604643-3588289997
Q gi|254780537|r    1 MLRYFICLLF---SYIPMSASA-TTQKKVVLSS   29 (294)
Q Consensus         1 M~r~~~~l~~---~~~~~~~~~-~~~~~~Vv~s   29 (294)
                      |||++++.++   +++.+++|+ .++.-.|+++
T Consensus         1 MKKKl~~~~~~~~svl~LaaCs~~~~~~~vat~   33 (310)
T PRK01326          1 MKKKLIAGAVTLLSVATLAACSKTNDNTKVISM   33 (310)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf             908899999999999999871699988068982


No 104
>PRK09701 D-allose transporter subunit; Provisional
Probab=50.71  E-value=19  Score=16.57  Aligned_cols=102  Identities=15%  Similarity=0.088  Sum_probs=51.9

Q ss_pred             CHHHHHH---HHHHHHHCCCCCCCCCCEEEEEC--HHHHHHHHHHCC-----CEEEEEEEECC-CCCCCCCCCCHHHHHH
Q ss_conf             9269999---99999860464335882899975--289999998518-----91489996268-8980120227124577
Q gi|254780537|r    1 MLRYFIC---LLFSYIPMSASATTQKKVVLSSF--SIIGDITQNIAK-----DLVTVTTLVEA-GNDSHSYQVTSADAIK   69 (294)
Q Consensus         1 M~r~~~~---l~~~~~~~~~~~~~~~~~Vv~s~--~pl~~iv~~I~g-----d~v~V~~li~~-g~dpH~ye~tp~d~~~   69 (294)
                      |||++.+   +++++++++.++.+.++-|++..  .|++..+++=+.     -.++|+...++ ..|+      ..|+..
T Consensus         1 m~k~~~~~~~~~~~~~~~~~a~a~~~iavi~k~~~npf~~~~~~Ga~~aAk~~G~~v~v~~~~~~~D~------~~Qi~~   74 (311)
T PRK09701          1 MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDF------QSQLQL   74 (311)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCH------HHHHHH
T ss_conf             93699999999999998887743684999968889989999999999999986997999927987899------999999


Q ss_pred             H-----CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf             6-----03789999887610689999974235575211123742
Q gi|254780537|r   70 I-----QNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGIN  108 (294)
Q Consensus        70 i-----~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~  108 (294)
                      |     ++.|.|+.+-.+-+....-+.+....+.+++.+...++
T Consensus        75 Ie~~I~~gvdaIii~p~d~~a~~~~i~~A~~aGIpVV~~D~~v~  118 (311)
T PRK09701         75 FEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKID  118 (311)
T ss_pred             HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf             99999759999999189877889999999977991896367667


No 105
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. 
Probab=49.82  E-value=20  Score=16.47  Aligned_cols=21  Identities=19%  Similarity=0.222  Sum_probs=11.5

Q ss_pred             HHHHHHHHCCCEEEEEEEECC
Q ss_conf             999999851891489996268
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTLVEA   53 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~li~~   53 (294)
                      +..+++.+.....+|+.+.+.
T Consensus        20 ~~~la~~L~~~G~~V~vit~~   40 (374)
T cd03801          20 VLELARALAARGHEVTVLTPG   40 (374)
T ss_pred             HHHHHHHHHHCCCEEEEEEEC
T ss_conf             999999999779989999607


No 106
>pfam07355 GRDB Glycine/sarcosine/betaine reductase selenoprotein B (GRDB). This family represents a conserved region approximately 350 residues long within the selenoprotein B component of the bacterial glycine, sarcosine and betaine reductase complexes.
Probab=49.22  E-value=20  Score=16.41  Aligned_cols=52  Identities=17%  Similarity=0.211  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHCCCEEEEEEEECCCCC---CCCCCCCHH--HHHHHCCCCEEEEECCCCC
Q ss_conf             28999999851891489996268898---012022712--4577603789999887610
Q gi|254780537|r   31 SIIGDITQNIAKDLVTVTTLVEAGND---SHSYQVTSA--DAIKIQNADLILCNGLHLE   84 (294)
Q Consensus        31 ~pl~~iv~~I~gd~v~V~~li~~g~d---pH~ye~tp~--d~~~i~~Adliv~~G~~~E   84 (294)
                      .|---+-+. .||..+|+.-+--|.+   -|.=+.+..  ++-+=.+.|+||. |..|-
T Consensus        35 Gpg~~l~~~-l~~~~eIv~TiICGDnYf~en~dea~~~il~mv~~~~pDlfiA-GPAFn   91 (349)
T pfam07355        35 GPGLQLNGL-LKDEAEVVHTVICGDSYFNENIEEAVAEILEMLKEEKPDLFIA-GPAFN   91 (349)
T ss_pred             CHHHHHHHH-HCCCCEEEEEEEECCHHHHCCHHHHHHHHHHHHHHCCCCEEEE-CCCCC
T ss_conf             869999998-4678789999996862444099999999999998429998987-66325


No 107
>PRK05586 biotin carboxylase; Validated
Probab=49.04  E-value=9.9  Score=18.50  Aligned_cols=13  Identities=23%  Similarity=0.419  Sum_probs=4.9

Q ss_pred             HCCCCEEEEECCCC
Q ss_conf             60378999988761
Q gi|254780537|r   70 IQNADLILCNGLHL   83 (294)
Q Consensus        70 i~~Adliv~~G~~~   83 (294)
                      -.+||.+ +=|.||
T Consensus        72 ~~g~dAi-hPGYGF   84 (447)
T PRK05586         72 LTGAQAI-HPGFGF   84 (447)
T ss_pred             HHCCCEE-ECCCCH
T ss_conf             8499899-718553


No 108
>PRK13601 putative ribosomal protein L7Ae-like; Provisional
Probab=49.02  E-value=20  Score=16.39  Aligned_cols=50  Identities=8%  Similarity=0.104  Sum_probs=38.2

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCCHHHHH---HHHHHHCCCEEEEEECCCCCC
Q ss_conf             99999976201697189982789979999---999982993444320123787
Q gi|254780537|r  221 MMRHAINQMRSHKIKFIFSESTNSDQPAK---QVAYETNASYGGVLYVDSLSK  270 (294)
Q Consensus       221 ~l~~~~~~ik~~~v~~if~e~~~~~~~~~---~ia~e~~~~~~~~~~~d~l~~  270 (294)
                      ..++..+.+++.+++.+|.-....++..+   .++++.++++..+.++.-||.
T Consensus        13 G~KQT~KAl~~g~a~~V~vA~DAD~~v~~~v~~lc~e~~VpV~~VdsMkeLGk   65 (84)
T PRK13601         13 GAKQTLKAIMNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYVDTMKELGV   65 (84)
T ss_pred             CHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf             38999999974983389998168688999999999973998698455998851


No 109
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=48.80  E-value=21  Score=16.37  Aligned_cols=75  Identities=23%  Similarity=0.208  Sum_probs=44.9

Q ss_pred             HHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf             9999985189148999626889801202271245776037899998--876106899999742355752111237420
Q gi|254780537|r   34 GDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCN--GLHLEETYMKYFTNLKKGTKIITVTDGINP  109 (294)
Q Consensus        34 ~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~--G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~  109 (294)
                      ...+++|--.+.+...+ |.-.=|+....+..--..+.+||++|.-  ...+..++.++.....++..++.++.|++.
T Consensus        34 ~~~~~~In~~~~n~~yl-p~i~L~~nI~~t~dl~~~l~~ad~iiiavPs~~~~~~l~~i~~~i~~~~~li~~tKGle~  110 (325)
T PRK00094         34 PEHAAEINTDRENPRYL-PGIKLPDNLRATSDLAEALADADLILVAVPSHAFREVLKQLKPLLRPDAPIVWATKGIEA  110 (325)
T ss_pred             HHHHHHHHHCCCCCCCC-CCCCCCCCEEEECCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCEEC
T ss_conf             99999999649886568-978589983897899999837984999457699999999998646899749997655624


No 110
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro: IPR010187   This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity acting on X-H and Y-H to form an X-Y bond with a disulfide as acceptor, 0030700 glycine reductase complex.
Probab=48.60  E-value=18  Score=16.79  Aligned_cols=177  Identities=7%  Similarity=0.056  Sum_probs=97.4

Q ss_pred             EECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHCCCC-CCCCCCCC
Q ss_conf             9752899999985189148999626889801202271245776037899998876106899-999742355-75211123
Q gi|254780537|r   28 SSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYM-KYFTNLKKG-TKIITVTD  105 (294)
Q Consensus        28 ~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~-~~~~~~~~~-~~~i~~~~  105 (294)
                      +|.-...-+++.+-|+.++.+..+|--...   +| ..-++.|++|.+-+...+|.=|.-. +.++++... --..++ +
T Consensus       185 ~s~R~V~ML~KKL~GEEF~TE~P~P~~D~V---~~-~~ai~d~sKA~IA~VT~GGIVP~~NPDrI~SsSA~kyG~YDi-~  259 (433)
T TIGR01918       185 GSERAVDMLVKKLKGEEFQTEYPMPVFDRV---EP-AAAIKDLSKAKIAVVTSGGIVPKDNPDRIESSSASKYGKYDI-T  259 (433)
T ss_pred             HHHHHHHHHHHHCCCCCEECCCCCCCCCCC---CC-CCCHHHHCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCC-H
T ss_conf             578999998743068620026888733620---13-630222023328998407543588878300122233665231-0


Q ss_pred             CCCHHHHHHCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
Q ss_conf             7420222100123346301112-213567899999999986431888999999899863014553378998863078447
Q gi|254780537|r  106 GINPIGVSEDTSVDSEPNPHAW-MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEK  184 (294)
Q Consensus       106 ~i~~~~~~~~~~~~~~~dpH~W-ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~  184 (294)
                      +++.+........|+++||-.= -||+..           +-+|                -|.+++.+  -++..     
T Consensus       260 g~~~L~~~~~~T~H~G~DP~~A~~dp~~v-----------~P~D----------------~LR~~EKE--G~IG~-----  305 (433)
T TIGR01918       260 GLDRLEEEVYETAHGGFDPAYANADPDRV-----------VPVD----------------VLRDLEKE--GKIGE-----  305 (433)
T ss_pred             HHHHHCCCCCEEEECCCCCHHHCCCCCEE-----------ECHH----------------HHHHHHCC--CCCCC-----
T ss_conf             35420356612430577802104888756-----------0166----------------76312127--84031-----


Q ss_pred             CEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHH-HHHHHHCCCCCEEEEEECCCC------HHHHHHHHHHHCC
Q ss_conf             369982665214577529728872268864000789999-999762016971899827899------7999999998299
Q gi|254780537|r  185 RWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMR-HAINQMRSHKIKFIFSESTNS------DQPAKQVAYETNA  257 (294)
Q Consensus       185 ~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~-~~~~~ik~~~v~~if~e~~~~------~~~~~~ia~e~~~  257 (294)
                              .|.||=..-|-         ...+.++++++ |+...+++.+|..++.-+...      ...++.| +..|+
T Consensus       306 --------lh~YFYsTvG~---------GT~~~~s~~~AkE~~~~L~~~~VDaVIlTST~GTCTRCGATMVKEI-ERaG~  367 (433)
T TIGR01918       306 --------LHKYFYSTVGN---------GTTVAESKQFAKEFVKELLEGGVDAVILTSTKGTCTRCGATMVKEI-ERAGI  367 (433)
T ss_pred             --------EEEEEEECCCC---------CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH-HHCCC
T ss_conf             --------57677412477---------3557878889999999998279888998168885544556200012-31698


Q ss_pred             CEEE
Q ss_conf             3444
Q gi|254780537|r  258 SYGG  261 (294)
Q Consensus       258 ~~~~  261 (294)
                      |++.
T Consensus       368 PvV~  371 (433)
T TIGR01918       368 PVVH  371 (433)
T ss_pred             CEEE
T ss_conf             7476


No 111
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase; InterPro: IPR004530   The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases .   Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases .   This family describes the mitochondrial phenylalanyl-tRNA synthetases. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases.; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=47.85  E-value=20  Score=16.47  Aligned_cols=28  Identities=25%  Similarity=0.173  Sum_probs=12.9

Q ss_pred             CCCCCHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf             2022712457760378999988761068
Q gi|254780537|r   59 SYQVTSADAIKIQNADLILCNGLHLEET   86 (294)
Q Consensus        59 ~ye~tp~d~~~i~~Adliv~~G~~~E~~   86 (294)
                      ..|.--..+.+..++|+++-+=+-+|-+
T Consensus       156 FHQ~~Ga~~~~~TK~~~~~~~P~y~E~~  183 (460)
T TIGR00469       156 FHQADGAAVRKVTKDDLFVKEPGYLEKI  183 (460)
T ss_pred             EECCCCCEEHHHHHHHHCCCCCCHHHHH
T ss_conf             1426762121002344304687401245


No 112
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine  to pyruvate and ammonia.  D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A.  D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=47.52  E-value=21  Score=16.24  Aligned_cols=85  Identities=18%  Similarity=0.215  Sum_probs=54.2

Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             89988630784473699826652145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r  172 PLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV  251 (294)
Q Consensus       172 ~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i  251 (294)
                      +.+.+++.   .+..+=..||-|-|+-  .|            .--.|.-++.=.+.+=...|.|+|+||..++-..-.+
T Consensus       228 rLk~QL~~---~gi~Vd~~hPLfVYLP--CG------------VGG~PGGVafGLK~~fGd~VhcfFaEPthsPcmllG~  290 (404)
T cd06447         228 RLKAQLAE---LGIKVDAEHPLFVYLP--CG------------VGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGM  290 (404)
T ss_pred             HHHHHHHH---CCCEECCCCCEEEEEC--CC------------CCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
T ss_conf             99999998---2973369987189963--78------------7876058888799882484389984787567899988


Q ss_pred             HHHHCCCEEEE-EECCCCCCCCC
Q ss_conf             99829934443-20123787778
Q gi|254780537|r  252 AYETNASYGGV-LYVDSLSKPDG  273 (294)
Q Consensus       252 a~e~~~~~~~~-~~~d~l~~~~~  273 (294)
                      +....-++.+. +-+|+.+..++
T Consensus       291 ~Tglhd~isV~D~Gldn~T~ADG  313 (404)
T cd06447         291 ATGLHDKISVQDIGIDNRTAADG  313 (404)
T ss_pred             HHCCCCCCCEEECCCCCCCCCCC
T ss_conf             75688898534216777645556


No 113
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN.  NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively.  NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein.  NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=47.52  E-value=21  Score=16.24  Aligned_cols=148  Identities=12%  Similarity=0.168  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC----HHHHHHC
Q ss_conf             213567899999999986431-8889-999998998630145533789988630784473699826652----1457752
Q gi|254780537|r  128 MSLTNAMIYIENIRKALTALD-PSNA-KKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL----VYLAEDF  201 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L~~~d-P~~~-~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af----~Y~~~~y  201 (294)
                      +-+++.......|++.+..-. |+.. +.+++....+...+.    +++..+.    .+|.++..-+.+    .-|.++.
T Consensus       238 ~Gl~~t~~~l~~la~~~g~~~~~~~~e~~I~~er~~l~d~l~----d~~~~l~----Gkrvai~~~~~~~~~l~~~l~El  309 (410)
T cd01968         238 YGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPELA----PYRARLE----GKKAALYTGGVKSWSLVSALQDL  309 (410)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHC----CCEEEEECCCHHHHHHHHHHHHC
T ss_conf             786999999999999838984024568999999999999999----9999853----98899964846889999999977


Q ss_pred             CCEEEEECCCCCCCC---------------CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECC
Q ss_conf             972887226886400---------------07899999997620169718998278997999999998299344432012
Q gi|254780537|r  202 GFKSLYLWPINSDSE---------------RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVD  266 (294)
Q Consensus       202 Gl~~~~~~~~~~~~e---------------ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d  266 (294)
                      |++++.....+...+               ..-.+..++.+.+++.++..++..+     --+.+|+..|+|...... +
T Consensus       310 Gm~vv~~~~~~~~~~~~~~~~~~~~~~~~vi~d~d~~el~~~i~~~~~Dliig~s-----~~~~~a~rlGiP~~~~~~-~  383 (410)
T cd01968         310 GMEVVATGTQKGTKEDYERIKELLGEGTVIVDDANPRELKKLLKEKKADLLVAGG-----KERYLALKLGIPFCDINH-E  383 (410)
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEEECC-----CHHHHHHHHCCCEEEECC-C
T ss_conf             9989998157898889999998559888898489999999998656999999577-----324889980898898037-7


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             3787778868999999999999986209
Q gi|254780537|r  267 SLSKPDGPAPTYLDLLRFSLTKIVDTLF  294 (294)
Q Consensus       267 ~l~~~~~~~~~Y~~~m~~N~~~l~~aL~  294 (294)
                          ....--.|-+.| +-++.|.+|||
T Consensus       384 ----~~~~~~GY~G~~-~l~~~i~nai~  406 (410)
T cd01968         384 ----RKHPYAGYEGML-NFAKEVDLAVN  406 (410)
T ss_pred             ----CCCCEEEHHHHH-HHHHHHHHHHC
T ss_conf             ----677733175199-99999999862


No 114
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=47.50  E-value=21  Score=16.24  Aligned_cols=14  Identities=7%  Similarity=0.105  Sum_probs=5.5

Q ss_pred             CHHHHHHHHHHHCCCE
Q ss_conf             9799999999829934
Q gi|254780537|r  244 SDQPAKQVAYETNASY  259 (294)
Q Consensus       244 ~~~~~~~ia~e~~~~~  259 (294)
                      ..|..+.+|.  |.++
T Consensus       312 ~~KilEama~--g~Pv  325 (397)
T TIGR03087       312 QNKVLEAMAM--AKPV  325 (397)
T ss_pred             CHHHHHHHHC--CCCE
T ss_conf             3579999976--9989


No 115
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179   This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=47.47  E-value=21  Score=16.24  Aligned_cols=66  Identities=17%  Similarity=0.199  Sum_probs=47.4

Q ss_pred             CCCCCCCCH-H-HHHHHHHHHCCCCCEEEEEECC--CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf             886400078-9-9999997620169718998278--99799999999829934443201237877788689999999
Q gi|254780537|r  211 INSDSERSP-S-MMRHAINQMRSHKIKFIFSEST--NSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLR  283 (294)
Q Consensus       211 ~~~~~eps~-~-~l~~~~~~ik~~~v~~if~e~~--~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~  283 (294)
                      +-||.+++. + =+.++.+..+.-+||+|.-|..  .|.+.++.|+ ++|++.+     | ++..++..-.+++.+|
T Consensus       164 vqpEGDr~F~~G~l~~i~~~~~~~~vPVIvKEvG~G~S~e~a~~L~-~~Gv~ai-----D-v~G~GGTswa~vE~~R  233 (349)
T TIGR02151       164 VQPEGDRNFSKGWLEKIAEICSAVSVPVIVKEVGFGISKEVAKLLA-DAGVKAI-----D-VSGAGGTSWAAVENYR  233 (349)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH-HCCEEEE-----E-ECCCCCCCHHHHHHHH
T ss_conf             5799970156538999999996528987998215799889999998-7890088-----7-0787675599999887


No 116
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=47.24  E-value=22  Score=16.21  Aligned_cols=22  Identities=9%  Similarity=0.043  Sum_probs=13.1

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             0789999999762016971899
Q gi|254780537|r  217 RSPSMMRHAINQMRSHKIKFIF  238 (294)
Q Consensus       217 ps~~~l~~~~~~ik~~~v~~if  238 (294)
                      .|+.++.++++.+...++.++|
T Consensus       132 ~~~~~~~~l~~~v~~~~~~~~~  153 (201)
T pfam01261       132 GYFEEALRLIEEVDSPNVGLCL  153 (201)
T ss_pred             CCHHHHHHHHHHCCCCCCCCCC
T ss_conf             9999999999864998655110


No 117
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=46.99  E-value=15  Score=17.32  Aligned_cols=25  Identities=12%  Similarity=0.195  Sum_probs=16.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf             9269999999998604643358828
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQKKV   25 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~~~   25 (294)
                      |+|.+.++++.+.+.+|....+.++
T Consensus         1 mr~ll~~~i~a~~lsgCqta~dglt   25 (144)
T PRK13835          1 MRRLLAACILALLLSGCQTATDGLT   25 (144)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9559999999998640413688644


No 118
>pfam12262 Lipase_bact_N Bacterial virulence factor lipase N-terminal. This domain family is found in bacteria, and is typically between 258 and 271 amino acids in length. There are two conserved sequence motifs: DGT and DGWST. This family is the N-terminal region of bacterial virulence factor lipase. The N-terminal region contains a potential signalling sequence.
Probab=46.88  E-value=22  Score=16.18  Aligned_cols=32  Identities=13%  Similarity=0.217  Sum_probs=17.9

Q ss_pred             CHHHHHHHHHHHHH-CCCCCCCCCCEEEEECHH
Q ss_conf             92699999999986-046433588289997528
Q gi|254780537|r    1 MLRYFICLLFSYIP-MSASATTQKKVVLSSFSI   32 (294)
Q Consensus         1 M~r~~~~l~~~~~~-~~~~~~~~~~~Vv~s~~p   32 (294)
                      |||+|+.++++-.+ +++|+.........+..|
T Consensus         1 MKk~~l~~~i~SAL~LaGCg~~s~~~g~~~~~~   33 (269)
T pfam12262         1 MKKKFLALLLASALLLAGCGDDTETSGTPTIDP   33 (269)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf             924799999999864111579965667755464


No 119
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=46.76  E-value=22  Score=16.16  Aligned_cols=30  Identities=17%  Similarity=0.026  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             643188899999989986301455337899
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLK  174 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~  174 (294)
                      .-+.|..+-......+++.-+++.-.+...
T Consensus       275 ~~~sp~da~L~lRGLrTL~lRm~r~~~nA~  304 (431)
T PRK08248        275 AALSPFNAFLLLQGLETLHLRMERHSENAL  304 (431)
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             778806779997268979999999998899


No 120
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=46.34  E-value=22  Score=16.12  Aligned_cols=88  Identities=10%  Similarity=0.100  Sum_probs=43.6

Q ss_pred             CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCHHHHH----------HHHHHHHHCCCCCC-C
Q ss_conf             30111221-35678999999999864318889999998998----630145533----------78998863078447-3
Q gi|254780537|r  122 PNPHAWMS-LTNAMIYIENIRKALTALDPSNAKKYELNARE----YSEKIRNSI----------LPLKTRIEKVDPEK-R  185 (294)
Q Consensus       122 ~dpH~Wld-p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~----~~~~l~~l~----------~~~~~~~~~~p~~~-~  185 (294)
                      ..||++.. |.-.-.+-+.|.+.+.+.-+..+..|+--++.    +...+....          --+++..+..- ++ +
T Consensus       278 ~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lG-gri~  356 (613)
T COG1022         278 VRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG-GRIR  356 (613)
T ss_pred             HCCEEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC-CCEE
T ss_conf             299399632589999999999998746166899999999988999886402557762023345889999999717-8479


Q ss_pred             EEEEE----CCCCHHHHHHCCCEEEEECC
Q ss_conf             69982----66521457752972887226
Q gi|254780537|r  186 WFVTS----EGCLVYLAEDFGFKSLYLWP  210 (294)
Q Consensus       186 ~~v~~----H~af~Y~~~~yGl~~~~~~~  210 (294)
                      ..++.    -+...+|.+..|+.+.--.|
T Consensus       357 ~~~sGGa~l~~~~~~f~~~lGi~i~eGYG  385 (613)
T COG1022         357 YALSGGAPLSPELLHFFRSLGIPILEGYG  385 (613)
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf             99956875988999999976977578854


No 121
>pfam09171 DUF1886 Domain of unknown function (DUF1886). This domain is predominantly found in the Archaeal protein N-glycosylase/DNA lyase.
Probab=46.22  E-value=22  Score=16.11  Aligned_cols=116  Identities=14%  Similarity=-0.002  Sum_probs=61.2

Q ss_pred             HHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHH--HHHHHHHHHCCCC--C
Q ss_conf             99863014553378998863078447369982665214577529728872268864000789--9999997620169--7
Q gi|254780537|r  159 AREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPS--MMRHAINQMRSHK--I  234 (294)
Q Consensus       159 ~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~--~l~~~~~~ik~~~--v  234 (294)
                      ...|...+..+-..+...+.+ +...+++|-.---|+|.++.-|-+....    |+.=|=|-  +++.+....-.-+  .
T Consensus       115 ~~~yy~~m~~l~~~La~~l~~-k~~~KTiVFAvKM~gYa~r~~~~~~~~~----p~eIpIPvD~Ri~~~T~~~~~~~~~~  189 (246)
T pfam09171       115 NELYYENLEELLEALAKILGA-KPESKTVVFAVKMFGYAYRAAFGVFRPY----PMEIPIPVDYRIAKLTKKSGLVDAPP  189 (246)
T ss_pred             HHHHHCCHHHHHHHHHHHHCC-CCCCCEEEEHHHHHHHHHHHHCCCCCCC----CCCCCCCCHHHHHHHHHHHHCCCCCH
T ss_conf             136541899999999999689-9875635445998999999956877789----87899962399999999873235873


Q ss_pred             EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf             189982789979999999982993444320123787778868999999
Q gi|254780537|r  235 KFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLL  282 (294)
Q Consensus       235 ~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m  282 (294)
                      ...........+....+|+++|+|   .+.+|++-.--+....+.+..
T Consensus       190 ~~~~~~~e~~~~~W~~Va~~~gIP---plhiDsilW~~g~~~~~~~~~  234 (246)
T pfam09171       190 EEAVARYEEVQEFWNRVARESGIP---PLHLDSILWLLGGAIDVGENI  234 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHCCCCHHHHHH
T ss_conf             665420277999999987355998---412257898716640352315


No 122
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase; InterPro: IPR013445    This entry contains CDP-glucose 4,6-dehydratases from a variety of Gram-negative and Gram-positive bacteria. Members are typically encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate CDP-D-glucose. This is used by the proteins in this entry to produce CDP-4-keto-6-deoxyglucose..
Probab=46.20  E-value=22  Score=16.11  Aligned_cols=68  Identities=9%  Similarity=0.134  Sum_probs=41.7

Q ss_pred             CCCEEEEECCCC-----HHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHH
Q ss_conf             473699826652-----145775297288722688640007899999997620169-718998278997999999
Q gi|254780537|r  183 EKRWFVTSEGCL-----VYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHK-IKFIFSESTNSDQPAKQV  251 (294)
Q Consensus       183 ~~~~~v~~H~af-----~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~-v~~if~e~~~~~~~~~~i  251 (294)
                      ++|+|||.|-.|     .+|....|-++.|.. +.|...|+-=++.++.+.++..= -..+|.+=....++.+.+
T Consensus         4 gKkVl~TGHTGFKGSWL~lWL~~lGA~V~GYS-L~P~t~PnlFe~l~l~~~~~~~Wyf~~~~gDIrD~~~L~~~~   77 (361)
T TIGR02622         4 GKKVLITGHTGFKGSWLSLWLLELGAEVAGYS-LDPPTSPNLFELLNLAKKIKDSWYFSSIFGDIRDAAKLEKAI   77 (361)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEE-CCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHH
T ss_conf             86789845786425589999984796798971-688788405557525424323505542330323278999999


No 123
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=45.92  E-value=23  Score=16.08  Aligned_cols=39  Identities=13%  Similarity=0.128  Sum_probs=27.8

Q ss_pred             CHHHHHHHHHHHCCCCCEEEEEECCC---CHHHHHHHHHHHC
Q ss_conf             78999999976201697189982789---9799999999829
Q gi|254780537|r  218 SPSMMRHAINQMRSHKIKFIFSESTN---SDQPAKQVAYETN  256 (294)
Q Consensus       218 s~~~l~~~~~~ik~~~v~~if~e~~~---~~~~~~~ia~e~~  256 (294)
                      ..+.+.+++++.++-++++=+.|-+.   +...+..+|+..-
T Consensus       289 ~~~~i~~~~~l~~~lglP~~L~elGv~e~~~e~l~~iAe~A~  330 (366)
T PRK09423        289 PKEEIEEVIDFCHAVGLPTTLADLGLKEDSDEELRKVAEAAC  330 (366)
T ss_pred             CHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf             399999999999987999988995999998899999999982


No 124
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=45.59  E-value=23  Score=16.05  Aligned_cols=136  Identities=15%  Similarity=0.111  Sum_probs=60.9

Q ss_pred             HHHHCCCCCC---CCCCEEEEECHHHHHHHHHHC---CC--EEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCC
Q ss_conf             9986046433---588289997528999999851---89--148999626889801202271245776037899998876
Q gi|254780537|r   11 SYIPMSASAT---TQKKVVLSSFSIIGDITQNIA---KD--LVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLH   82 (294)
Q Consensus        11 ~~~~~~~~~~---~~~~~Vv~s~~pl~~iv~~I~---gd--~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~   82 (294)
                      .+++++|+..   ...++|-+|-.|..++.+.+.   .+  ..+|....=.  |   | ..|..  +|.+-|+= .|-..
T Consensus        17 ~l~l~gCg~~~~~~~~ikVG~~~gp~~ei~e~~~~~~~ek~G~~veiv~Fs--D---y-~~pN~--AL~~G~iD-aN~fQ   87 (271)
T PRK11063         17 SLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKEKYGLDVELVTFN--D---Y-VLPNE--ALSKGDID-ANAFQ   87 (271)
T ss_pred             HHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEC--C---C-HHHHH--HHHCCCCC-HHHHH
T ss_conf             997500589856798189984689879999998888886079768999936--8---3-21558--98679844-23455


Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCC-CCCHH----------HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf             10689999974235575211123-74202----------22100123346301112213567899999999-98643188
Q gi|254780537|r   83 LEETYMKYFTNLKKGTKIITVTD-GINPI----------GVSEDTSVDSEPNPHAWMSLTNAMIYIENIRK-ALTALDPS  150 (294)
Q Consensus        83 ~E~~~~~~~~~~~~~~~~i~~~~-~i~~~----------~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~-~L~~~dP~  150 (294)
                      ..+|+....++.+  ...+.+.. .+.++          ..-.++..=.     +=-||.|..+....+.+ .|++++|.
T Consensus        88 H~~yL~~~nk~~g--~~L~~v~~~~~~P~glYS~K~ksl~elp~Ga~Ia-----IPND~sN~~RAL~lL~~aGLIkLk~~  160 (271)
T PRK11063         88 HKPYLDQQIKDRG--YKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVA-----VPNDPTNLGRSLLLLQKVGLIKLKDG  160 (271)
T ss_pred             CHHHHHHHHHHCC--CCEEEEEEEEEEEEEEEECCCCCHHHCCCCCEEE-----ECCCCCHHHHHHHHHHHCCCEEECCC
T ss_conf             7999999999779--9579986677841586423658864756999998-----04885609999999998898897799


Q ss_pred             HH-----HHHHHHHHHH
Q ss_conf             89-----9999989986
Q gi|254780537|r  151 NA-----KKYELNAREY  162 (294)
Q Consensus       151 ~~-----~~y~~N~~~~  162 (294)
                      ..     ..+.+|-+.+
T Consensus       161 ~~~~~T~~DI~~Npk~l  177 (271)
T PRK11063        161 VGLLPTVLDIVENPKNL  177 (271)
T ss_pred             CCCCCCHHHHHCCCCCC
T ss_conf             99878966885488774


No 125
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=45.54  E-value=23  Score=16.04  Aligned_cols=148  Identities=14%  Similarity=0.184  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEE---------CCC
Q ss_conf             01112213567899999999986431888999999899863014553378998863078447369982---------665
Q gi|254780537|r  123 NPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTS---------EGC  193 (294)
Q Consensus       123 dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~---------H~a  193 (294)
                      +-++|-|.   ++.++++++.+.+.         +.+++..++++...+++++.-+.-......+.++         ..-
T Consensus       148 ~~n~~~S~---~~n~e~Lg~IFgkE---------~eAk~~~~~id~~i~~~k~~a~~~~~t~m~il~ngGkisafGp~SR  215 (320)
T COG4607         148 TANLIEST---KQNIETLGKIFGKE---------EEAKELLADIDASIAAAKEKAAGKGKTALVILVNGGKISAFGPSSR  215 (320)
T ss_pred             HHHHHHHH---HHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCC
T ss_conf             67889999---99999999985840---------8899999879999999999864169805999944970455448775


Q ss_pred             CHHHHHHCCCEEEE--ECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE-C-------CCCHH--HHHHHHHHHCC-CEE
Q ss_conf             21457752972887--226886400078999999976201697189982-7-------89979--99999998299-344
Q gi|254780537|r  194 LVYLAEDFGFKSLY--LWPINSDSERSPSMMRHAINQMRSHKIKFIFSE-S-------TNSDQ--PAKQVAYETNA-SYG  260 (294)
Q Consensus       194 f~Y~~~~yGl~~~~--~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e-~-------~~~~~--~~~~ia~e~~~-~~~  260 (294)
                      |+.+-+.+|++-+.  +...+||...|.       +.|++.|..+||+- .       ..+.+  .=+.+.+++++ +-.
T Consensus       216 fg~ihd~~G~~pvd~~~~~s~HGq~VSf-------EyI~e~NPD~lfViDR~~aig~~~~~a~qvldN~lv~~t~A~k~g  288 (320)
T COG4607         216 FGWIHDDLGFTPVDENIKNSNHGQPVSF-------EYIKEKNPDWLFVIDRGAAIGEEGSAAKQVLDNELVANTKAWKNG  288 (320)
T ss_pred             CEEEECCCCCCCCCCCCCCCCCCCEECH-------HHHHHHCCCEEEEEECCCHHCCCCHHHHHHHCCHHHHHCCHHHCC
T ss_conf             3133201288832333444678872029-------999751998799971740314776167776401988733141068


Q ss_pred             EEEECCCCCCCCC--CCCCHHHHHHHHHHHHHHHC
Q ss_conf             4320123787778--86899999999999998620
Q gi|254780537|r  261 GVLYVDSLSKPDG--PAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       261 ~~~~~d~l~~~~~--~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      .+.++|+-..-..  .-.+|.+||    +.+++++
T Consensus       289 ~I~yLdp~~wy~aggG~~s~~~~i----~~~~~a~  319 (320)
T COG4607         289 QIIYLDPDTWYIAGGGLESLTQMI----EQVKAAF  319 (320)
T ss_pred             EEEEECHHHHHHHCCCHHHHHHHH----HHHHHHH
T ss_conf             389977389634356399999999----9999863


No 126
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962    Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy .   PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic .   This entry contains a number of enzyme families:  Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase    All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding.
Probab=45.32  E-value=23  Score=16.02  Aligned_cols=137  Identities=13%  Similarity=0.190  Sum_probs=78.8

Q ss_pred             HHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC---CCCCCCCCCCCHHHH-----------H---------HCCCC----
Q ss_conf             45776037899998876106899999742355---752111237420222-----------1---------00123----
Q gi|254780537|r   66 DAIKIQNADLILCNGLHLEETYMKYFTNLKKG---TKIITVTDGINPIGV-----------S---------EDTSV----  118 (294)
Q Consensus        66 d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~---~~~i~~~~~i~~~~~-----------~---------~~~~~----  118 (294)
                      |=-+|++|+.++|+-.+|+. |.+.++.+...   .+.+.+.|||=.++.           .         .|-|.    
T Consensus       134 DG~RLtkA~k~~y~H~dm~D-L~~~l~e~~~~Gqy~~~l~vTDGVFSMDGdvApLp~iVE~Ae~Yda~~yVDDAHGsGVl  212 (392)
T TIGR01825       134 DGLRLTKAKKKIYKHVDMDD-LERVLRENVEEGQYKKKLIVTDGVFSMDGDVAPLPEIVELAEKYDALVYVDDAHGSGVL  212 (392)
T ss_pred             HCCCCCCCCEEEEECCCHHH-HHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf             04223788568984598458-99999716033754436899665042567878873233463245957998633466444


Q ss_pred             -------------C-CC--------------------------------CCHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             -------------3-46--------------------------------301112---2135678999999999864318
Q gi|254780537|r  119 -------------D-SE--------------------------------PNPHAW---MSLTNAMIYIENIRKALTALDP  149 (294)
Q Consensus       119 -------------~-~~--------------------------------~dpH~W---ldp~~~~~~a~~I~~~L~~~dP  149 (294)
                                   + +.                                -=|.++   +.|.-....+++|..-  ..+|
T Consensus       213 Ge~GrGtV~HFGL~y~~v~~qvGTLSKA~GvvGGY~AG~~~lidyL~~~aRPFLFSta~~Pa~~~A~~~Av~~l--~~~~  290 (392)
T TIGR01825       213 GEKGRGTVKHFGLEYDKVDIQVGTLSKAIGVVGGYVAGSKELIDYLKARARPFLFSTALPPAVVAALIEAVDVL--QESP  290 (392)
T ss_pred             CCCCCCEEECCCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCC
T ss_conf             77887135303754164678855522322256642348889999998628986012578807899999999987--0793


Q ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC-----HHHHHHCCCEEEEEC
Q ss_conf             889999998998630145533789988630784473699826652-----145775297288722
Q gi|254780537|r  150 SNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL-----VYLAEDFGFKSLYLW  209 (294)
Q Consensus       150 ~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af-----~Y~~~~yGl~~~~~~  209 (294)
                      +.-+-...|++-|++.|..|==..-.  +..|-.  +++.+....     .-|.++||+=..++.
T Consensus       291 ~l~~kLW~Nt~ylk~~L~~LGydl~~--S~tPIt--Pv~~Gde~~A~efS~rL~~~yGvFa~siv  351 (392)
T TIGR01825       291 ELMEKLWDNTRYLKAGLSKLGYDLGE--SETPIT--PVLIGDEKVAQEFSRRLLDEYGVFAQSIV  351 (392)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCC--CEEECCCHHHHHHHHHHHHHCCEEEEEEE
T ss_conf             14777678899999876761641147--668612--45876515689999987775290899842


No 127
>PRK12450 foldase protein PrsA; Reviewed
Probab=45.32  E-value=19  Score=16.58  Aligned_cols=30  Identities=13%  Similarity=0.188  Sum_probs=14.1

Q ss_pred             CHHHHHHHH--HHHHHCCCCCC-CCCCEEEEEC
Q ss_conf             926999999--99986046433-5882899975
Q gi|254780537|r    1 MLRYFICLL--FSYIPMSASAT-TQKKVVLSSF   30 (294)
Q Consensus         1 M~r~~~~l~--~~~~~~~~~~~-~~~~~Vv~s~   30 (294)
                      |+|+++.++  ++++.+++|++ ++.-.|+++-
T Consensus         4 mKK~~~~~~~~~svl~LaAC~s~~~~~~v~t~k   36 (309)
T PRK12450          4 MNKLITGVVTLATVVTLSACQSSHNNTKLVSMK   36 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf             999999999999999998605899983689835


No 128
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=45.22  E-value=23  Score=16.01  Aligned_cols=18  Identities=11%  Similarity=0.078  Sum_probs=11.6

Q ss_pred             CHHHHHHHHHHHHHCCCC
Q ss_conf             926999999999860464
Q gi|254780537|r    1 MLRYFICLLFSYIPMSAS   18 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~   18 (294)
                      |+|++.++++.+.+.+|.
T Consensus         1 MrK~~~~all~laL~gCA   18 (156)
T PRK13883          1 MRKILSLALLALALGGCA   18 (156)
T ss_pred             CHHHHHHHHHHHHHHCCC
T ss_conf             926899999999970331


No 129
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=45.22  E-value=23  Score=16.01  Aligned_cols=59  Identities=12%  Similarity=0.206  Sum_probs=43.3

Q ss_pred             CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC----------CCCEEEEEECCCCHHHHHHHHH
Q ss_conf             736998266521457752972887226886400078999999976201----------6971899827899799999999
Q gi|254780537|r  184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS----------HKIKFIFSESTNSDQPAKQVAY  253 (294)
Q Consensus       184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~----------~~v~~if~e~~~~~~~~~~ia~  253 (294)
                      ++.+++|.|.|.               +..+..|++.++.++...||+          .+++ |++....+++-++.+.+
T Consensus       160 ~~iiIAYEPvWA---------------IGTG~~as~~~i~~~~~~Ir~~l~~~~~~~~~~i~-IlYGGSVn~~N~~~i~~  223 (251)
T PRK00042        160 ANLVIAYEPVWA---------------IGTGKTATPEQAQEVHAFIRKVLAELYAEVAEKVR-ILYGGSVKPDNAAELFA  223 (251)
T ss_pred             CCEEEEECCHHH---------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEECCCCHHHHHHHHC
T ss_conf             535999675775---------------07999999999999999999999986052305753-88717789989999966


Q ss_pred             HHCCC
Q ss_conf             82993
Q gi|254780537|r  254 ETNAS  258 (294)
Q Consensus       254 e~~~~  258 (294)
                      .-++.
T Consensus       224 ~~~vD  228 (251)
T PRK00042        224 QPDID  228 (251)
T ss_pred             CCCCC
T ss_conf             88999


No 130
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=45.13  E-value=20  Score=16.40  Aligned_cols=57  Identities=11%  Similarity=0.193  Sum_probs=28.8

Q ss_pred             HHCCCEEEEECCCCCCCCCCHHHHH-HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf             7529728872268864000789999-9997620169718998278997999999998299344
Q gi|254780537|r  199 EDFGFKSLYLWPINSDSERSPSMMR-HAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG  260 (294)
Q Consensus       199 ~~yGl~~~~~~~~~~~~eps~~~l~-~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~  260 (294)
                      -.||++++-+.... +...+-.+.+ ++.+.|...+..    ++.+-.+++..+-+..|+++-
T Consensus       209 t~~GyhIIk~~~k~-~k~~~~~~~K~~lk~~i~~~k~~----D~~~~~~vi~k~lkkanV~ik  266 (287)
T PRK03095        209 SQFGYHIIKVTDIK-EPEKSFEQSKADIKKELVQKKAQ----DGEFMNDLMMKEIKKADVKVD  266 (287)
T ss_pred             ECCEEEEEEEEECC-CCCCCHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHCCCCCC
T ss_conf             08835999984147-88999899999999999999864----769999999999997798615


No 131
>KOG1405 consensus
Probab=45.04  E-value=23  Score=15.99  Aligned_cols=37  Identities=22%  Similarity=0.370  Sum_probs=19.2

Q ss_pred             EECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf             7226886400078999999976201697189982789
Q gi|254780537|r  207 YLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN  243 (294)
Q Consensus       207 ~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~  243 (294)
                      .++....+...||.=++.+++..++++|.+|+-|.|.
T Consensus       279 PIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQT  315 (484)
T KOG1405         279 PIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQT  315 (484)
T ss_pred             CHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEC
T ss_conf             1102578866898999999999986495899640000


No 132
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=44.75  E-value=24  Score=15.96  Aligned_cols=11  Identities=27%  Similarity=0.456  Sum_probs=4.3

Q ss_pred             HCCCCEEEEEC
Q ss_conf             60378999988
Q gi|254780537|r   70 IQNADLILCNG   80 (294)
Q Consensus        70 i~~Adliv~~G   80 (294)
                      +..||.++.+.
T Consensus       138 ~~~ad~ii~vS  148 (365)
T cd03809         138 LRRADAIITVS  148 (365)
T ss_pred             HHHCCEEEECC
T ss_conf             99699999979


No 133
>PRK07503 methionine gamma-lyase; Provisional
Probab=44.58  E-value=24  Score=15.94  Aligned_cols=30  Identities=10%  Similarity=0.149  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             643188899999989986301455337899
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLK  174 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~  174 (294)
                      .-+.|.++-......+++.-+++.-.+...
T Consensus       245 ~~lsP~da~L~lRGL~TL~lRm~~~~~nA~  274 (403)
T PRK07503        245 AVLSPHDASLLMRGLKTLALRMDRHCANAQ  274 (403)
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             868868889986467759999999999999


No 134
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=44.51  E-value=24  Score=15.94  Aligned_cols=40  Identities=23%  Similarity=0.218  Sum_probs=20.4

Q ss_pred             HHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEE
Q ss_conf             89999998518914899962688980120227124577603789999
Q gi|254780537|r   32 IIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILC   78 (294)
Q Consensus        32 pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~   78 (294)
                      ....+++.+.....+|+.+......       ........+.|++-.
T Consensus        18 ~~~~L~~~L~~~Gh~v~v~~~~~~~-------~~~~~~~~~~dvvh~   57 (365)
T cd03825          18 AAYRLHRALQAAGVDSTMLVQEKKA-------LISKIEIINADIVHL   57 (365)
T ss_pred             HHHHHHHHHHHCCCEEEEEEECCCC-------HHHHHHHCCCCEEEE
T ss_conf             9999999999779908999926984-------777665528998998


No 135
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia.  This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent  nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=44.15  E-value=24  Score=15.90  Aligned_cols=201  Identities=13%  Similarity=0.168  Sum_probs=98.2

Q ss_pred             EEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf             48999626889801202271245776037899998876106899999742355752111237420222100123346301
Q gi|254780537|r   45 VTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNP  124 (294)
Q Consensus        45 v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dp  124 (294)
                      ++|..+++.|.       +-.+++.+.+|++-+..+...-..+.+.+++. .+...+..                   +|
T Consensus       180 i~v~~~~~~~~-------~~~~i~~~~~A~~nl~~~~~~~~~~a~~l~~~-~g~p~~~~-------------------~p  232 (399)
T cd00316         180 IRVNALFDGGT-------TVEELRELGNAKLNLVLCRESGLYLARYLEEK-YGIPYILI-------------------NP  232 (399)
T ss_pred             CCEEEECCCCC-------CHHHHHHCCCCCEEEEECHHHHHHHHHHHHHH-HCCCEEEC-------------------CC
T ss_conf             90589769999-------97999752635389996765799999999986-09855605-------------------88


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH----HHHHH
Q ss_conf             11221356789999999998643188899999989986301455337899886307844736998266521----45775
Q gi|254780537|r  125 HAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV----YLAED  200 (294)
Q Consensus       125 H~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~----Y~~~~  200 (294)
                         +-+++.......|++.+..-.+ -.+.+.+..+.+...+.+    ++..+.    .+|.++...+...    .|.++
T Consensus       233 ---~G~~~T~~~l~~i~~~~g~~~~-~~~~i~~e~~~~~~~~~~----~~~~l~----gkrv~i~~~~~~~~~l~~~l~e  300 (399)
T cd00316         233 ---IGLEATDAFLRKLAELFGIEKE-VPEVIARERARLLDALAD----YHEYLG----GKKVAIFGDGDLLLALARFLLE  300 (399)
T ss_pred             ---CCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHH----HHHHHC----CCEEEEECCCHHHHHHHHHHHH
T ss_conf             ---7869999999999998489864-489999999999999999----988745----9889998882789999999998


Q ss_pred             CCCEEEEECCCCCCC---------------CCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEC
Q ss_conf             297288722688640---------------00789999999762016971899827899799999999829934443201
Q gi|254780537|r  201 FGFKSLYLWPINSDS---------------ERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYV  265 (294)
Q Consensus       201 yGl~~~~~~~~~~~~---------------eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~  265 (294)
                      .|++++.+....+..               ..-..++.++.+.+++.+...++..     ...+.+++..+++...+.+.
T Consensus       301 lG~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~d~~~~~~~i~~~~pDliig~-----~~~~~~a~~~~ip~~~~~~p  375 (399)
T cd00316         301 LGMEVVAAGTTFGHKADYERREELLGEGTEVVDDGDLEELEELIRELKPDLIIGG-----SKGRYIAKKLGIPLVRIGFP  375 (399)
T ss_pred             CCCEEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEEEC-----CHHHHHHHHCCCCEEECCCC
T ss_conf             7996779998469847788999741799889988999999999871699999979-----44789999849988976785


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             23787778868999999999999986209
Q gi|254780537|r  266 DSLSKPDGPAPTYLDLLRFSLTKIVDTLF  294 (294)
Q Consensus       266 d~l~~~~~~~~~Y~~~m~~N~~~l~~aL~  294 (294)
                        ..  ..+--.|-++ .+-++.+.++|+
T Consensus       376 --~~--~~p~~Gy~G~-~~l~~~i~n~l~  399 (399)
T cd00316         376 --IH--RRPYVGYEGA-LNLAEEIANALL  399 (399)
T ss_pred             --CC--CCCCCCHHHH-HHHHHHHHHHHC
T ss_conf             --34--6741618879-999999998539


No 136
>pfam04788 DUF620 Protein of unknown function (DUF620). Family of uncharacterized proteins.
Probab=43.67  E-value=4.7  Score=20.69  Aligned_cols=103  Identities=20%  Similarity=0.238  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH
Q ss_conf             22135678999999999864318889999998998-----------6301455337899886307844736998266521
Q gi|254780537|r  127 WMSLTNAMIYIENIRKALTALDPSNAKKYELNARE-----------YSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV  195 (294)
Q Consensus       127 Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~-----------~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~  195 (294)
                      |+-...++--..-++..|..+||...+.+=.|+.-           |.-+|..--...+.+     .....=|.-|-.|+
T Consensus        70 w~~~hAakGp~RPLRR~lQGLDPr~tA~lF~~a~ciGEk~i~geDCFvLkl~a~~~~l~ar-----s~~~~EiirH~~~G  144 (242)
T pfam04788        70 WLGAHAAKGPPRPLRRALQGLDPRTTASLFANAQCIGEKKVNGEDCFVLKLDADPAVLSAR-----SDGPAEVIRHTLFG  144 (242)
T ss_pred             CCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHC-----CCCCCEEEEEEEEC
T ss_conf             5435102489962678863898005776530141114222388531898740785665410-----37880699975201


Q ss_pred             HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf             45775297288722688640007899999997620169718998278997999
Q gi|254780537|r  196 YLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPA  248 (294)
Q Consensus       196 Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~  248 (294)
                      ||.++-||=+.- +    +..     |..    |+..+-..+|.|...++.+-
T Consensus       145 YFSQrtGLLv~l-E----DS~-----Ltr----iq~~g~~~vyWETt~~S~i~  183 (242)
T pfam04788       145 YFSQRSGLLVRL-E----DSH-----LTR----IQSPGAEAVYWETTIESSLG  183 (242)
T ss_pred             CCCCCCCCEEEE-E----ECC-----EEE----EECCCCCCEEEEECCCCCCC
T ss_conf             112123515555-3----040-----465----53389972688851102321


No 137
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=43.55  E-value=25  Score=15.84  Aligned_cols=75  Identities=12%  Similarity=0.076  Sum_probs=47.4

Q ss_pred             HHHHHCCCCCCCEEEEECCCCHH--HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             98863078447369982665214--5775297288722688640007899999997620169718998278997999999
Q gi|254780537|r  174 KTRIEKVDPEKRWFVTSEGCLVY--LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV  251 (294)
Q Consensus       174 ~~~~~~~p~~~~~~v~~H~af~Y--~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i  251 (294)
                      ...+.....+...|+..||=||-  ...-|-= ...+..  |...+..+.+.++.+..+.-|.+++...+....+.+..+
T Consensus       105 ~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~-~~~vlt--p~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~v  181 (279)
T COG0287         105 VEAMEKYLPGDVRFVGGHPMFGPEADAGLFEN-AVVVLT--PSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAV  181 (279)
T ss_pred             HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCC-CEEEEE--CCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHH
T ss_conf             99999746677707821899987431123379-679994--799987899999999999749889986888987899999


No 138
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=43.49  E-value=25  Score=15.83  Aligned_cols=85  Identities=18%  Similarity=0.196  Sum_probs=50.8

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf             78998863078447369982665214577529728872268864000789999999762016971899827899799999
Q gi|254780537|r  171 LPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQ  250 (294)
Q Consensus       171 ~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~  250 (294)
                      ..++++++.   .+..+=..||-|-|+--  |            ..-.|..++.=.+.+=..+|.|+|+||..++-..-.
T Consensus       253 ~Rlk~Q~d~---~gi~vd~ehPLfVylPC--G------------VGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLG  315 (443)
T COG3048         253 QRLKKQFDE---QGIVVDAEHPLFVYLPC--G------------VGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLG  315 (443)
T ss_pred             HHHHHHHHH---CCCEECCCCCEEEEEEC--C------------CCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf             999998986---48441688864999615--7------------787863154556766157438998368777077775


Q ss_pred             HHHHHCCCEEEE-EECCCCCCCC
Q ss_conf             999829934443-2012378777
Q gi|254780537|r  251 VAYETNASYGGV-LYVDSLSKPD  272 (294)
Q Consensus       251 ia~e~~~~~~~~-~~~d~l~~~~  272 (294)
                      +-....-++.+. +-.|+++..+
T Consensus       316 v~tGlHe~ISVqdiGidn~TaAD  338 (443)
T COG3048         316 VYTGLHEQISVQDIGIDNLTAAD  338 (443)
T ss_pred             HHHCCCCCEEEEEECCCCCCCCC
T ss_conf             44142211135750556643345


No 139
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen.  It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=43.47  E-value=25  Score=15.83  Aligned_cols=19  Identities=16%  Similarity=0.265  Sum_probs=10.5

Q ss_pred             HHHHHHHHCCCEEEEEEEE
Q ss_conf             9999998518914899962
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTLV   51 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~li   51 (294)
                      ...+++.++....+|+.+.
T Consensus        20 ~~~la~~L~~~Gh~V~v~t   38 (394)
T cd03794          20 TTELAEELVKRGHEVTVIT   38 (394)
T ss_pred             HHHHHHHHHHCCCEEEEEE
T ss_conf             9999999997799799995


No 140
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319   This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=43.28  E-value=13  Score=17.66  Aligned_cols=56  Identities=13%  Similarity=0.196  Sum_probs=31.4

Q ss_pred             CCCCCCCCCEEEEECHHHHHH-HHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCH
Q ss_conf             464335882899975289999-9985189148999626889801202271245776037899998876106
Q gi|254780537|r   16 SASATTQKKVVLSSFSIIGDI-TQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEE   85 (294)
Q Consensus        16 ~~~~~~~~~~Vv~s~~pl~~i-v~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~   85 (294)
                      +..-+++|-+|+.|+.   .+ +.++-...+=||.+..|     +|+|      .+++|.-||+|=+|+..
T Consensus       405 g~~Ia~GkvkVi~~~~---e~k~~~~~~GdiLVT~mTDP-----DWeP------~MK~AsAIVTn~GG~Tc  461 (877)
T TIGR01418       405 GPGIASGKVKVILDLK---EMKVDKFEEGDILVTDMTDP-----DWEP------VMKRASAIVTNEGGRTC  461 (877)
T ss_pred             CCCCCCCCCEEECCHH---HHCCCCCCCCCEEEECCCCC-----CCHH------HCCCCCEEEECCCCCHH
T ss_conf             6640356526875743---43204438864687578742-----8121------22130304707887500


No 141
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=43.26  E-value=25  Score=15.81  Aligned_cols=75  Identities=13%  Similarity=0.166  Sum_probs=33.3

Q ss_pred             CHHHHH-HHHHHHHHCCCCCCCC-C---CEEE-----------EECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCH
Q ss_conf             926999-9999998604643358-8---2899-----------9752899999985189148999626889801202271
Q gi|254780537|r    1 MLRYFI-CLLFSYIPMSASATTQ-K---KVVL-----------SSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTS   64 (294)
Q Consensus         1 M~r~~~-~l~~~~~~~~~~~~~~-~---~~Vv-----------~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp   64 (294)
                      |+|.++ +++++++++++.+.++ +   +++.           ....|+.+..++-.|-.|  +..++.+-.      .-
T Consensus         1 m~~r~l~~~~~~~~~~~~~a~a~~~p~~l~~gv~P~~~~~~~~~~~~Pl~~yL~~~lg~~V--e~~~~~~y~------~~   72 (288)
T TIGR03431         1 MLRRLILSLVAAFMLISSNAQAEDWPKELNFGIIPTENASDLKQRWEPLADYLSKKLGVKV--KLFFATDYA------GV   72 (288)
T ss_pred             CCHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCE--EEEECCCHH------HH
T ss_conf             9088999999999997432243048836899980699999999999999999999878978--999689999------99


Q ss_pred             HHHHHHCCCCEEEEECCCC
Q ss_conf             2457760378999988761
Q gi|254780537|r   65 ADAIKIQNADLILCNGLHL   83 (294)
Q Consensus        65 ~d~~~i~~Adliv~~G~~~   83 (294)
                      -+.-+=.+.|+.+.++..|
T Consensus        73 ~eal~~g~~Dia~~~p~~y   91 (288)
T TIGR03431        73 IEGMRFGKVDIAWYGPSSY   91 (288)
T ss_pred             HHHHHCCCCEEEEECCHHH
T ss_conf             9999859830999884788


No 142
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=43.00  E-value=25  Score=15.79  Aligned_cols=50  Identities=0%  Similarity=-0.093  Sum_probs=37.3

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCCHH--HHHHHHHHHCCCEEEEEECC
Q ss_conf             078999999976201697189982789979--99999998299344432012
Q gi|254780537|r  217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQ--PAKQVAYETNASYGGVLYVD  266 (294)
Q Consensus       217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~--~~~~ia~e~~~~~~~~~~~d  266 (294)
                      ..+-...++.+.++..+..+++..||..-+  ..+..+.+.|+++..+.+.|
T Consensus        34 I~Av~~~e~~~~i~~~~yDv~LlgPQVr~~~~~~k~~a~~~giPv~vI~~~~   85 (104)
T PRK09590         34 VDAISATEGGKAIAAAAFDLYLVSPQTKMYFKQFEEAGSKAGKPVVQIPPQA   85 (104)
T ss_pred             EEEEEHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf             9984888988763226887899887688789999999987299778878746


No 143
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=42.49  E-value=25  Score=15.73  Aligned_cols=18  Identities=6%  Similarity=0.133  Sum_probs=8.9

Q ss_pred             CEEEEECHHHHHHHHHHC
Q ss_conf             289997528999999851
Q gi|254780537|r   24 KVVLSSFSIIGDITQNIA   41 (294)
Q Consensus        24 ~~Vv~s~~pl~~iv~~I~   41 (294)
                      ..|+++-.-+..+.+.+.
T Consensus       195 ~~l~~~~~~~~~ll~~~~  212 (700)
T PTZ00216        195 KAIVCNGKNVPNLLRLMK  212 (700)
T ss_pred             CEEEECCHHHHHHHHHHH
T ss_conf             889985168999999886


No 144
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=42.15  E-value=15  Score=17.23  Aligned_cols=15  Identities=33%  Similarity=0.439  Sum_probs=7.3

Q ss_pred             HHHCCCCEEEEECCCC
Q ss_conf             7760378999988761
Q gi|254780537|r   68 IKIQNADLILCNGLHL   83 (294)
Q Consensus        68 ~~i~~Adliv~~G~~~   83 (294)
                      .+-..+|.+ +=|.||
T Consensus        70 A~~~g~dAi-hPGYGF   84 (449)
T PRK08591         70 AEITGADAI-HPGYGF   84 (449)
T ss_pred             HHHHCCCEE-ECCCCH
T ss_conf             998299989-727424


No 145
>KOG4549 consensus
Probab=42.13  E-value=26  Score=15.70  Aligned_cols=49  Identities=18%  Similarity=0.144  Sum_probs=39.1

Q ss_pred             CCCCC-HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             40007-89999999762016971899827899799999999829934443
Q gi|254780537|r  214 DSERS-PSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV  262 (294)
Q Consensus       214 ~~eps-~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~  262 (294)
                      +.|++ -.++..++..+|+.+|.++.+....+++.+++.-+-.+++..++
T Consensus        40 g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gv   89 (144)
T KOG4549          40 GEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGV   89 (144)
T ss_pred             CCEEEECCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCC
T ss_conf             60456604356789999865928999527788899999999855575544


No 146
>PRK10866 outer membrane protein assembly complex subunit YfiO; Provisional
Probab=41.80  E-value=20  Score=16.51  Aligned_cols=39  Identities=15%  Similarity=0.018  Sum_probs=18.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHH
Q ss_conf             9269999999998604643358828999752899999985
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNI   40 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I   40 (294)
                      ||++++++++++++.+|++.. +...-.|..-++.-+..-
T Consensus         4 ~k~l~~~~~l~l~l~gCs~~~-~~~~~~~~~~~Y~~A~~~   42 (243)
T PRK10866          4 MKYLVAAATLSLFLAGCSGSK-EEVPDNPPNEIYATAQQK   42 (243)
T ss_pred             HHHHHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHH
T ss_conf             899999999999998768998-888899999999999999


No 147
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal; InterPro: IPR012714    Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacteria), a toroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=41.57  E-value=26  Score=15.64  Aligned_cols=50  Identities=12%  Similarity=0.288  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCHH-------------------HHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf             999999976201697189982789979-------------------9999999829934443201237877
Q gi|254780537|r  220 SMMRHAINQMRSHKIKFIFSESTNSDQ-------------------PAKQVAYETNASYGGVLYVDSLSKP  271 (294)
Q Consensus       220 ~~l~~~~~~ik~~~v~~if~e~~~~~~-------------------~~~~ia~e~~~~~~~~~~~d~l~~~  271 (294)
                      +.|++..+.|.+-|+.++||+-.....                   -++.|++.||++++.  .++-+.+.
T Consensus       269 ~~Lke~VD~i~~~GAnVVfCQKGIDD~Aq~yLak~GIlAvRRVKkSDi~~LarATGA~i~s--~i~e~~~~  337 (522)
T TIGR02339       269 AMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVS--SIKEITES  337 (522)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCEEC--CHHHCCHH
T ss_conf             9999998899982898798228868999998710560220433533799998731884125--73116963


No 148
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=41.41  E-value=26  Score=15.62  Aligned_cols=31  Identities=10%  Similarity=0.021  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             6431888999999899863014553378998
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKT  175 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~  175 (294)
                      ..+.|..+-......+++.-+++.-.+....
T Consensus       232 ~~~sP~~a~l~~RGL~TL~lRm~~~~~nA~~  262 (388)
T PRK08861        232 ATGTPFDSYMTLRGIRTLGARMRVHEESAQE  262 (388)
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             7788677788854789788999999986999


No 149
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=41.12  E-value=27  Score=15.60  Aligned_cols=49  Identities=12%  Similarity=0.166  Sum_probs=35.2

Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCHHHHH---HHHHHHCCCEEEEEECCCCCC
Q ss_conf             9999976201697189982789979999---999982993444320123787
Q gi|254780537|r  222 MRHAINQMRSHKIKFIFSESTNSDQPAK---QVAYETNASYGGVLYVDSLSK  270 (294)
Q Consensus       222 l~~~~~~ik~~~v~~if~e~~~~~~~~~---~ia~e~~~~~~~~~~~d~l~~  270 (294)
                      .++..+.+++.+++.+|.-....++..+   .++++.|+++..+.++.-||.
T Consensus        16 ~KQT~KAi~~g~~~~V~IA~Dad~~v~~~v~~l~~ek~Ipv~~V~Smk~LGk   67 (82)
T PRK13602         16 TKQTVKALKRGSVKEVVVAKDADPCLTSGVINLANEQGVPVSMVESMKKLGK   67 (82)
T ss_pred             HHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf             3998999976981299998259888999999999972998799628999751


No 150
>PRK05967 cystathionine beta-lyase; Provisional
Probab=40.24  E-value=28  Score=15.51  Aligned_cols=31  Identities=6%  Similarity=0.039  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             6431888999999899863014553378998
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKT  175 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~  175 (294)
                      .-+.|.++-......+++.-+++.-.+....
T Consensus       242 ~~l~P~~a~l~lrGl~TL~lRm~r~~~nA~~  272 (392)
T PRK05967        242 LCAGPDDTYQILRGLRTMGIRLEHHRKSALE  272 (392)
T ss_pred             CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             6679788899871776099999999998999


No 151
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=40.18  E-value=28  Score=15.50  Aligned_cols=49  Identities=12%  Similarity=0.168  Sum_probs=21.5

Q ss_pred             ECHHHHHHHHHHCCCEEEEEEEE-CCCCCCCCCCCCHHHHHHH--CCCCEEEEEC
Q ss_conf             75289999998518914899962-6889801202271245776--0378999988
Q gi|254780537|r   29 SFSIIGDITQNIAKDLVTVTTLV-EAGNDSHSYQVTSADAIKI--QNADLILCNG   80 (294)
Q Consensus        29 s~~pl~~iv~~I~gd~v~V~~li-~~g~dpH~ye~tp~d~~~i--~~Adliv~~G   80 (294)
                      +....+.+.+++-...+++..+- +++   +.+..-.+-.+.+  .+-|+|-..+
T Consensus        38 ~~~~~~~~~~~~~~~~v~~~~l~~~~~---~~~~~~~~l~~li~~~kpDiIh~~~   89 (374)
T TIGR03088        38 ALTEVSAFRKRIQRPDVAFYALHKQPG---KDVAVYPQLYRLLRQLRPDIVHTRN   89 (374)
T ss_pred             EECCCCHHHHHHHHCCCEEEECCCCCC---CCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf             978984578999868988999078876---4799999999999983984898636


No 152
>KOG1185 consensus
Probab=39.33  E-value=28  Score=15.41  Aligned_cols=29  Identities=34%  Similarity=0.639  Sum_probs=23.6

Q ss_pred             CCCCCCCCHHHHHHHCCCCEEEEECCCCC
Q ss_conf             80120227124577603789999887610
Q gi|254780537|r   56 DSHSYQVTSADAIKIQNADLILCNGLHLE   84 (294)
Q Consensus        56 dpH~ye~tp~d~~~i~~Adliv~~G~~~E   84 (294)
                      |-|-+..+..-..+|++||+++..|.-+.
T Consensus       260 d~hPl~v~~aRS~ALk~ADvvll~Garln  288 (571)
T KOG1185         260 DNHPLNVSSARSLALKKADVVLLAGARLN  288 (571)
T ss_pred             CCCCHHHHHHHHHHHHHCCEEEEECCEEE
T ss_conf             88720266789988743888999415565


No 153
>PRK12789 flgI flagellar basal body P-ring protein; Reviewed
Probab=39.15  E-value=15  Score=17.26  Aligned_cols=39  Identities=13%  Similarity=0.226  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHH----H-----HHHH--------HHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             135678999999999----8-----6431--------888999999899863014553378
Q gi|254780537|r  129 SLTNAMIYIENIRKA----L-----TALD--------PSNAKKYELNAREYSEKIRNSILP  172 (294)
Q Consensus       129 dp~~~~~~a~~I~~~----L-----~~~d--------P~~~~~y~~N~~~~~~~l~~l~~~  172 (294)
                      |..++.+++++|-..    +     ...|        |.+   |  +--.|.+++++++-+
T Consensus       195 DFtTA~ria~aIN~~~~~~~g~~~A~a~d~~tV~v~~P~~---~--~~v~fla~ie~l~V~  250 (367)
T PRK12789        195 DFKTATQISDAINAYSLGRYGRRVASERDQRTVVLSRPRQ---I--GPTRFIAEIGDLTIE  250 (367)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC---C--CHHHHHHHHHCCCCC
T ss_conf             7799999999986551123685756746896379817999---7--889999997568467


No 154
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=38.83  E-value=25  Score=15.78  Aligned_cols=16  Identities=25%  Similarity=0.351  Sum_probs=6.1

Q ss_pred             EEEECHHHHHHHHHHC
Q ss_conf             9997528999999851
Q gi|254780537|r   26 VLSSFSIIGDITQNIA   41 (294)
Q Consensus        26 Vv~s~~pl~~iv~~I~   41 (294)
                      ++.+...+.+.++++.
T Consensus       126 ~li~~~~~~~~~~~~~  141 (560)
T PRK08751        126 VLVVIDNFGTTVQQVI  141 (560)
T ss_pred             EEEEECCHHHHHHHHH
T ss_conf             9999264366899986


No 155
>PRK13138 consensus
Probab=38.54  E-value=29  Score=15.33  Aligned_cols=94  Identities=12%  Similarity=0.152  Sum_probs=41.5

Q ss_pred             CCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             65214577529728872268864000789999999762016-97189982789979999999982993444320123787
Q gi|254780537|r  192 GCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-KIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSK  270 (294)
Q Consensus       192 ~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~  270 (294)
                      ..|-|....+|..        .....-+.++.+.++.+|+. ++++..-=.-.+++.++.+.+....=+++--.++-+.+
T Consensus       169 ~gFiY~Vs~~GvT--------G~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~~~~~ADGvIVGSaiv~~i~~  240 (264)
T PRK13138        169 SGFIYYVTSYGVT--------GERGAIASGLEDRIQMVRKIVGLPVCAGFGISTADQAKEISTYADGVIIGSAVQKIIEE  240 (264)
T ss_pred             CCEEEEEECCCCC--------CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEECHHHHHHHHH
T ss_conf             8808987545667--------87655537699999999974389838860679899999998349999981999999997


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             77886899999999999998620
Q gi|254780537|r  271 PDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       271 ~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      ...+.+.-.+-+..-+..|++|+
T Consensus       241 ~~~~~~~~~~~v~~~~~~lk~~~  263 (264)
T PRK13138        241 NGSDRENCADKLFAYASEIRASM  263 (264)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             27877789999999999999963


No 156
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases.  wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=38.18  E-value=30  Score=15.30  Aligned_cols=12  Identities=17%  Similarity=0.354  Sum_probs=7.4

Q ss_pred             HHCCCCEEEEEC
Q ss_conf             760378999988
Q gi|254780537|r   69 KIQNADLILCNG   80 (294)
Q Consensus        69 ~i~~Adliv~~G   80 (294)
                      ....+|.++.|+
T Consensus       150 ~~~~~d~iianS  161 (351)
T cd03804         150 SAARVDYFIANS  161 (351)
T ss_pred             HHHCCCEEEECC
T ss_conf             874388999879


No 157
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=38.11  E-value=30  Score=15.29  Aligned_cols=66  Identities=11%  Similarity=0.138  Sum_probs=34.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHH--------HHHHHCCCE-EEEEEEECCCCCCCCCCCCHHHH
Q ss_conf             92699999999986046433588289997528999--------999851891-48999626889801202271245
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGD--------ITQNIAKDL-VTVTTLVEAGNDSHSYQVTSADA   67 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~--------iv~~I~gd~-v~V~~li~~g~dpH~ye~tp~d~   67 (294)
                      |++.+++..+.+.+++++.+-.+..+....+...+        =|.+|||.- -+++.+..+|+ -++|-+...|=
T Consensus         1 ~~~~~l~aaa~~~~LaGCt~~d~~~~~~~ePlVkdV~~GMT~qqV~~igG~Pss~~~~~~~~Gt-C~~YiL~~~dG   75 (109)
T PRK11251          1 NMAGILSAAAVLTMLAGCTAYDRNPVQYVEPVVKDVKKGMTRQQVLQIGGKPSSEVSMIHARGT-CQTYILGNRDG   75 (109)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCC-CCEEEEECCCC
T ss_conf             9025889999999997144776781343150698887475799999854998641788607852-20037324689


No 158
>PRK08463 acetyl-CoA carboxylase; Validated
Probab=37.97  E-value=22  Score=16.11  Aligned_cols=10  Identities=0%  Similarity=0.135  Sum_probs=3.4

Q ss_pred             HHHHHHHHHH
Q ss_conf             9999999999
Q gi|254780537|r  279 LDLLRFSLTK  288 (294)
Q Consensus       279 ~~~m~~N~~~  288 (294)
                      ..|+..|++.
T Consensus       438 T~fle~~~~e  447 (478)
T PRK08463        438 TSYIETHMQE  447 (478)
T ss_pred             CHHHHHHHHH
T ss_conf             1277640786


No 159
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=37.94  E-value=28  Score=15.41  Aligned_cols=17  Identities=6%  Similarity=0.028  Sum_probs=8.7

Q ss_pred             CHHHHHHHHHHHCCCEE
Q ss_conf             97999999998299344
Q gi|254780537|r  244 SDQPAKQVAYETNASYG  260 (294)
Q Consensus       244 ~~~~~~~ia~e~~~~~~  260 (294)
                      ..+.+..+-+..++++-
T Consensus       253 ~~~~i~k~~kkanV~ik  269 (285)
T PRK03002        253 GKKLLQKELKKANIKIN  269 (285)
T ss_pred             HHHHHHHHHHHCCCCCC
T ss_conf             99999999987898436


No 160
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=37.63  E-value=30  Score=15.24  Aligned_cols=138  Identities=13%  Similarity=0.082  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEE-----CCCCHHHHHHC
Q ss_conf             2213567899999999986431888999999899863014553378998863078447369982-----66521457752
Q gi|254780537|r  127 WMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTS-----EGCLVYLAEDF  201 (294)
Q Consensus       127 Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~-----H~af~Y~~~~y  201 (294)
                      -+|-..|+.-.+...+.+++.=++.=. +---+   ..-+..+.+.+|+.-      -+.-++.     =++..|+....
T Consensus        60 P~DVHLMv~~pd~~~~~Fa~aGA~~I~-vH~Ea---~~h~~R~l~~Ik~~G------~~AG~v~NP~TPl~~~~~~L~~~  129 (216)
T TIGR01163        60 PIDVHLMVENPDRYIEDFAEAGADIIT-VHAEA---TEHIHRLLQLIKELG------AKAGIVLNPATPLEALEYVLEDV  129 (216)
T ss_pred             CEEEEECCCCHHHHHHHHHHHCCCEEE-EECCC---CCCHHHHHHHHHHCC------CCEEEEECCCCCHHHHHHHHHHC
T ss_conf             126630357857778899970899899-84377---626799999999718------97068867999987899898762


Q ss_pred             CCEEEEECCCCC---CC---CCCHHHHHHHHHHHC--CCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf             972887226886---40---007899999997620--169718-998278997999999998299344432012378777
Q gi|254780537|r  202 GFKSLYLWPINS---DS---ERSPSMMRHAINQMR--SHKIKF-IFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPD  272 (294)
Q Consensus       202 Gl~~~~~~~~~~---~~---eps~~~l~~~~~~ik--~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~  272 (294)
                      ++--+  ...+|   |+   +-+-..++++++.|+  +.+-+| |..+.+.+.+.+..+ ++.|+.+.+.      |...
T Consensus       130 D~VLl--MSVnPGFgGQkFIP~~~~Kir~~R~~id~~~~~~~~~ieVDGGv~~~ni~~~-~~AGAD~~Va------GSai  200 (216)
T TIGR01163       130 DLVLL--MSVNPGFGGQKFIPETLEKIRELRKMIDKLELGLSILIEVDGGVNEDNIAEV-AEAGADILVA------GSAI  200 (216)
T ss_pred             CEEEE--EEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH-HHCCCCEEEE------EEEE
T ss_conf             98998--8760799884110578999999999998602799558997179897679999-9758989998------3102


Q ss_pred             CCCC--CHHHHHH
Q ss_conf             8868--9999999
Q gi|254780537|r  273 GPAP--TYLDLLR  283 (294)
Q Consensus       273 ~~~~--~Y~~~m~  283 (294)
                      -.++  +|-+.++
T Consensus       201 F~~~s~d~~~~i~  213 (216)
T TIGR01163       201 FGADSLDYKEAIR  213 (216)
T ss_pred             ECCCCCCHHHHHH
T ss_conf             0888668799997


No 161
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=37.56  E-value=30  Score=15.23  Aligned_cols=60  Identities=17%  Similarity=0.063  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH-----HHHHCCCE
Q ss_conf             6431888999999899863014553378998863078447369982665214-----57752972
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVY-----LAEDFGFK  204 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y-----~~~~yGl~  204 (294)
                      .-+.|-++-......+++.-+++.-.+.......-+....+.--++||...-     ++++++.+
T Consensus       284 ~~lsP~~a~L~lrGL~TL~lRm~r~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~h~la~~~~~~  348 (437)
T PRK05613        284 ATLSPFNAWAAVQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLPDSPWYATKEKLGLK  348 (437)
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCC
T ss_conf             67884888998736750889999999999999999850999477989999998329999985899


No 162
>KOG0053 consensus
Probab=37.42  E-value=30  Score=15.22  Aligned_cols=71  Identities=11%  Similarity=-0.110  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH---HHHHCCCCCCCEE---EEECCCCHHHHH
Q ss_conf             1356789999999998643188899999989986301455337899---8863078447369---982665214577
Q gi|254780537|r  129 SLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLK---TRIEKVDPEKRWF---VTSEGCLVYLAE  199 (294)
Q Consensus       129 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~---~~~~~~p~~~~~~---v~~H~af~Y~~~  199 (294)
                      +++.+.++-....+-+.-.+|-.+..-..-++++.-++++-.+...   ..+..-|.-++.+   +.+||.+.+..+
T Consensus       240 ~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~  316 (409)
T KOG0053         240 SEELASRLKFLQEDLGWCEDPFDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKR  316 (409)
T ss_pred             CHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHH
T ss_conf             49999999999998557998899999866841554049888878999998765088536897589888824777875


No 163
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=37.34  E-value=30  Score=15.21  Aligned_cols=37  Identities=8%  Similarity=0.188  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             9999999762016971899827899799999999829
Q gi|254780537|r  220 SMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETN  256 (294)
Q Consensus       220 ~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~  256 (294)
                      .+-.+....+++.++..+|.........++.|.++..
T Consensus        99 ~dp~~~~~~L~~~Gv~~VF~pGT~~~~ii~~i~~~l~  135 (137)
T PRK02261         99 HDFEEVEKKFKEMGFDRVFAPGTDLEEVIDDLKADLN  135 (137)
T ss_pred             CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf             7839999999977979887978899999999999863


No 164
>TIGR01245 trpD anthranilate phosphoribosyltransferase; InterPro: IPR005940    In many widely different species, including Escherichia coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzyme is a C-terminal part of a multifunctional protein together with glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (4.1.3.27 from EC).; GO: 0004048 anthranilate phosphoribosyltransferase activity, 0000162 tryptophan biosynthetic process.
Probab=36.75  E-value=31  Score=15.15  Aligned_cols=49  Identities=14%  Similarity=0.206  Sum_probs=34.6

Q ss_pred             HHHHHHHCCCCCEEEEEECCCCH-HHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf             99997620169718998278997-999999998299344432012378777
Q gi|254780537|r  223 RHAINQMRSHKIKFIFSESTNSD-QPAKQVAYETNASYGGVLYVDSLSKPD  272 (294)
Q Consensus       223 ~~~~~~ik~~~v~~if~e~~~~~-~~~~~ia~e~~~~~~~~~~~d~l~~~~  272 (294)
                      .++.+.|++.|+-++|+...++. |.+..+-++++++++ ++.+-||..|=
T Consensus       132 e~v~~~l~~~GigFlFAP~yHpa~k~v~pvR~~Lg~rTv-FN~LGPL~NPA  181 (331)
T TIGR01245       132 EKVARSLEEVGIGFLFAPLYHPAMKHVAPVRRELGVRTV-FNLLGPLTNPA  181 (331)
T ss_pred             HHHHHHHHHCCCEEEECCCCCHHHHHHCCCHHHCCCCEE-ECCHHHCCCCC
T ss_conf             999999974694585177513465642041111686402-01210002656


No 165
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=36.68  E-value=20  Score=16.41  Aligned_cols=22  Identities=18%  Similarity=0.116  Sum_probs=11.2

Q ss_pred             CCEEEEEEEECCCCCCCCCCCCHH
Q ss_conf             891489996268898012022712
Q gi|254780537|r   42 KDLVTVTTLVEAGNDSHSYQVTSA   65 (294)
Q Consensus        42 gd~v~V~~li~~g~dpH~ye~tp~   65 (294)
                      ++.=.|..+..  .|+-.|+.+|+
T Consensus        60 ~~dE~I~~v~~--Gd~~~W~v~~~   81 (293)
T PRK13861         60 GANETVTAVAV--SNSKDLAALPR   81 (293)
T ss_pred             CCCCEEEEECC--CCCCCEEEECC
T ss_conf             89987998615--88201489627


No 166
>PRK04792 tolB translocation protein TolB; Provisional
Probab=36.38  E-value=32  Score=15.11  Aligned_cols=30  Identities=10%  Similarity=0.025  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             135678999999999864318889999998
Q gi|254780537|r  129 SLTNAMIYIENIRKALTALDPSNAKKYELN  158 (294)
Q Consensus       129 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N  158 (294)
                      .+.+.+.+|+.|+|..-+.--..+..|..+
T Consensus       157 ~~~~~R~~aH~isD~Iy~~lTG~~G~F~tr  186 (450)
T PRK04792        157 SAPRMREYAHRISDLVYEQLTGERGAFLTR  186 (450)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             778999999999999999970997530104


No 167
>PRK06683 hypothetical protein; Provisional
Probab=36.29  E-value=32  Score=15.10  Aligned_cols=49  Identities=14%  Similarity=0.176  Sum_probs=35.4

Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCHHHHH---HHHHHHCCCEEEEEECCCCCC
Q ss_conf             9999976201697189982789979999---999982993444320123787
Q gi|254780537|r  222 MRHAINQMRSHKIKFIFSESTNSDQPAK---QVAYETNASYGGVLYVDSLSK  270 (294)
Q Consensus       222 l~~~~~~ik~~~v~~if~e~~~~~~~~~---~ia~e~~~~~~~~~~~d~l~~  270 (294)
                      .++..+.+|..+++.+|.-....++..+   .++++.|+++..+..+.-||.
T Consensus        16 tKQTlKAlk~g~v~~v~iA~DAD~~v~~~v~~~a~~~~ipV~~VdSmk~LGk   67 (82)
T PRK06683         16 HKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGK   67 (82)
T ss_pred             HHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECHHHHHH
T ss_conf             5988999984982699997258688899999999982998799712988741


No 168
>pfam07383 DUF1496 Protein of unknown function (DUF1496). This family consists of several bacterial proteins of around 90 residues in length. Members of this family seem to be found exclusively in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.
Probab=36.28  E-value=29  Score=15.38  Aligned_cols=33  Identities=18%  Similarity=0.135  Sum_probs=19.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHH
Q ss_conf             926999999999860464335882899975289
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSII   33 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl   33 (294)
                      |++.++..+.++..+.+.+......|+++.+|-
T Consensus         1 Mk~~~~~~~~~~~~~~~la~~~~~dv~~~~~~~   33 (88)
T pfam07383         1 MKRLLILCFAALLSLVALANSVAADVIVTPPPE   33 (88)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHH
T ss_conf             921899999999999986165788666169977


No 169
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=36.23  E-value=32  Score=15.10  Aligned_cols=185  Identities=13%  Similarity=0.160  Sum_probs=80.0

Q ss_pred             HHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHH
Q ss_conf             9998518914899962688980120227124577603789999887610689999974235575211-123742022210
Q gi|254780537|r   36 ITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIIT-VTDGINPIGVSE  114 (294)
Q Consensus        36 iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~-~~~~i~~~~~~~  114 (294)
                      +-+-+.+=.++|..++|-|.+       +.|+++|-+||+=|.--.++-.-..+++++. .+.+.+. +-=|        
T Consensus       180 i~RLl~~lGi~VNvV~P~Gas-------~~dl~rL~~A~~Nv~lYrE~g~~aa~~Le~~-fg~P~~~~~PiG--------  243 (524)
T PRK02910        180 LRRLLATLGIDVNVVAPLGAS-------PADLKRLPAAWFNVVLYREIGESAAEYLERE-FGMPYVTTVPIG--------  243 (524)
T ss_pred             HHHHHHHCCCEEEEEECCCCC-------HHHHHHCCCCCEEEECCHHHHHHHHHHHHHH-HCCCEECCCCCC--------
T ss_conf             999998759668898049999-------7888510204074642587779999999988-589701034754--------


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCCCEEEEECCC
Q ss_conf             01233463011122135678999999999864318889999998998630145533789988630-78447369982665
Q gi|254780537|r  115 DTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEK-VDPEKRWFVTSEGC  193 (294)
Q Consensus       115 ~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~-~p~~~~~~v~~H~a  193 (294)
                                     .......+..+.+. ..++|.....|...-.....++    -|+...... .=..+|.||.....
T Consensus       244 ---------------v~~T~~flrel~~~-lg~~~~~~~~~i~~~~~~~s~~----~W~srSvD~~~ltgKr~fVfGDaT  303 (524)
T PRK02910        244 ---------------VGATARFIREVAEL-LNLDGADLEAFILDELSAPSRL----PWFSRSVDSTYLTGKRVFVFGDAT  303 (524)
T ss_pred             ---------------HHHHHHHHHHHHHH-HCCCCCCHHHHHHHHCCCCCCC----CEEEECCCCHHHCCCEEEEECCCH
T ss_conf             ---------------17999999999999-6899642255554420142335----301213650121364479965607


Q ss_pred             C-----HHHHHHCCCEEEEECCCCCC-CCC-------------CHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             2-----14577529728872268864-000-------------7899999997620169718998278997999999998
Q gi|254780537|r  194 L-----VYLAEDFGFKSLYLWPINSD-SER-------------SPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYE  254 (294)
Q Consensus       194 f-----~Y~~~~yGl~~~~~~~~~~~-~ep-------------s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e  254 (294)
                      +     .++.++.|++++++=.-+.+ .++             --.|-.++.+.|.+.....||. +|..    +-+++.
T Consensus       304 ha~a~~kil~~ElG~~vvg~GTY~r~~Ar~~r~~~~~~~~e~lItdD~~eV~~~I~~~~P~lv~G-TqME----RHi~kr  378 (524)
T PRK02910        304 HAVAAAKILRDELGFEVVGAGTYLREDARWVRAAAKGYGDEALITDDYLEVEDAIAEAAPELVLG-TQME----RHSAKR  378 (524)
T ss_pred             HHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCCEEEC-CHHH----HHHHHC
T ss_conf             99999999888648078731355187789999999860645064067899999998559652104-0787----655520


Q ss_pred             HCCCEEE
Q ss_conf             2993444
Q gi|254780537|r  255 TNASYGG  261 (294)
Q Consensus       255 ~~~~~~~  261 (294)
                      ++++-.+
T Consensus       379 L~IPCaV  385 (524)
T PRK02910        379 LGIPCAV  385 (524)
T ss_pred             CCCCCCC
T ss_conf             5998556


No 170
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=36.03  E-value=32  Score=15.07  Aligned_cols=19  Identities=21%  Similarity=0.193  Sum_probs=10.2

Q ss_pred             HHHHHHHHCCCEEEEEEEE
Q ss_conf             9999998518914899962
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTLV   51 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~li   51 (294)
                      +..+++.++.-..+|+.+.
T Consensus        20 v~~La~~L~~~Gh~V~Vit   38 (398)
T cd03796          20 IYQLSQCLIKRGHKVVVIT   38 (398)
T ss_pred             HHHHHHHHHHCCCEEEEEE
T ss_conf             9999999997699899996


No 171
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=35.89  E-value=29  Score=15.41  Aligned_cols=13  Identities=23%  Similarity=0.263  Sum_probs=9.8

Q ss_pred             CCCCCCCCHHHHH
Q ss_conf             8012022712457
Q gi|254780537|r   56 DSHSYQVTSADAI   68 (294)
Q Consensus        56 dpH~ye~tp~d~~   68 (294)
                      +.-.|||+|+|+.
T Consensus        32 NVgrWqpt~sDLq   44 (55)
T PRK13859         32 NVGRWQPTPSDLQ   44 (55)
T ss_pred             CCCCCCCCHHHCC
T ss_conf             2245557865437


No 172
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=35.84  E-value=32  Score=15.05  Aligned_cols=73  Identities=12%  Similarity=0.166  Sum_probs=34.7

Q ss_pred             CCCCEEEEECCCCHHHHH-------HCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH--HHH
Q ss_conf             447369982665214577-------52972887226886400078999999976201697189982789979999--999
Q gi|254780537|r  182 PEKRWFVTSEGCLVYLAE-------DFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAK--QVA  252 (294)
Q Consensus       182 ~~~~~~v~~H~af~Y~~~-------~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~--~ia  252 (294)
                      ..++.++....+-+..++       +.|+.....        ..+.........+.++++-.+|.-+..+....+  .+|
T Consensus       131 ~A~~I~i~G~G~S~~vA~~~~~kl~rig~~~~~~--------~d~~~~~~~~~~l~~~Dv~I~iS~sG~t~~~~~~~~~A  202 (282)
T PRK11557        131 SARRIILTGIGASGLVAQNFAWKLMKIGINAVAE--------RDMHALLATVQALSPDDLLLAISYSGERRELNLAADEA  202 (282)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEC--------CCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf             4895899970436999999999999809963740--------88689999998189999899985999978999999999


Q ss_pred             HHHCCCEEEE
Q ss_conf             9829934443
Q gi|254780537|r  253 YETNASYGGV  262 (294)
Q Consensus       253 ~e~~~~~~~~  262 (294)
                      ++.|++++.+
T Consensus       203 k~~Ga~iIaI  212 (282)
T PRK11557        203 LRVGGKVLAI  212 (282)
T ss_pred             HHCCCEEEEE
T ss_conf             9879939997


No 173
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase; InterPro: IPR002082   Aspartate carbamoyltransferase (ATCase) catalyses the formation of carbamoyl-aspartate in the pyrimidine biosynthesis pathway, by the association of aspartate and carbamoyl-phosphate. This is the commitment step in the Escherichia coli pathway and is regulated by feedback inhibition by CTP, the final product of the pathway.   The structural organisation of the ATCase protein varies considerably between different organisms. In bacteria such as E. coli, Salmonella typhimurium and Serratia marcescens, the ATCase is a dodecamer of 2 catalytic (c) trimers and 3 regulatory (r) dimers. The catalytic domains are coded for by the pyrB gene, and the regulatory domains by pyrI. In Gram-positive bacteria such as Bacillus subtilis, ATCase exists as a trimer of catalytic subunits, but unlike in E. coli, it neither contains nor binds to regulatory subunits. In eukaryotes, ATCase is found as a single domain in a multifunctional enzyme that contains activity for glutamine amidotransferase, carbamoylphosphate synthetase, dihydroorotase, and aspartate carbamoyltransferase. ; GO: 0004070 aspartate carbamoyltransferase activity, 0006207 'de novo' pyrimidine base biosynthetic process.
Probab=35.27  E-value=33  Score=14.99  Aligned_cols=73  Identities=15%  Similarity=0.196  Sum_probs=44.3

Q ss_pred             HHHHHHHHCC--CEEEEEEEECCCC-C---CCCCCCCHHHHHHHCCCCEEEEECCCCC---HHHHHHHHHC----CCCCC
Q ss_conf             9999998518--9148999626889-8---0120227124577603789999887610---6899999742----35575
Q gi|254780537|r   33 IGDITQNIAK--DLVTVTTLVEAGN-D---SHSYQVTSADAIKIQNADLILCNGLHLE---ETYMKYFTNL----KKGTK   99 (294)
Q Consensus        33 l~~iv~~I~g--d~v~V~~li~~g~-d---pH~ye~tp~d~~~i~~Adliv~~G~~~E---~~~~~~~~~~----~~~~~   99 (294)
                      ..--.+.+||  +.+.+   -+.++ +   ..++-=|-+-+...+++|+||.=- .+|   ..+.+++...    .-+.+
T Consensus        60 FE~A~KRLGgPn~v~~~---~~~~~sS~~KGEtL~DTi~~~~~y~D~D~iViRH-~~~GvCegaar~~ae~~~R~~~~vP  135 (336)
T TIGR00670        60 FETAMKRLGGPNDVVNF---SDSETSSVAKGETLADTIKTLSAYGDSDAIVIRH-PLEGVCEGAARLAAEVSDRLGIEVP  135 (336)
T ss_pred             HHHHHHHHCCCCCEEEC---CCCCCCCHHCCCCHHHHHHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf             88988872798545622---5563411210544788999885404755699835-8654134688999886311045787


Q ss_pred             -CCCCCCCCCH
Q ss_conf             -2111237420
Q gi|254780537|r  100 -IITVTDGINP  109 (294)
Q Consensus       100 -~i~~~~~i~~  109 (294)
                       +|+++||...
T Consensus       136 sviNAGDG~~q  146 (336)
T TIGR00670       136 SVINAGDGSGQ  146 (336)
T ss_pred             EEEECCCCCCC
T ss_conf             16636878787


No 174
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=35.17  E-value=33  Score=14.98  Aligned_cols=95  Identities=15%  Similarity=0.091  Sum_probs=53.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHHH----------------------HHH--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             301112213567899999999----------------------986--43188899999989986301455337899886
Q gi|254780537|r  122 PNPHAWMSLTNAMIYIENIRK----------------------ALT--ALDPSNAKKYELNAREYSEKIRNSILPLKTRI  177 (294)
Q Consensus       122 ~dpH~Wldp~~~~~~a~~I~~----------------------~L~--~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~  177 (294)
                      .||-+|-||..+.++.+..+.                      .|.  +-||+-.+..+.....+.+++..|..+++..+
T Consensus        24 s~p~fW~D~~~a~kl~kE~~~L~~~v~~~~~l~~~~~dl~el~eLl~ee~D~el~e~a~~El~~l~~~l~~lE~eL~~lL  103 (360)
T PRK00591         24 SDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAEEDLEDAKELLKEESDPEMREMAKEELKELEERLEELEEELKILL  103 (360)
T ss_pred             HCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             29852129999999999999999999999999999998999999986279978999999999999999999999999983


Q ss_pred             HC-CCCC-CCEEEEECCCCH----------------HHHHHCCCEEEEECCCCCCCCC
Q ss_conf             30-7844-736998266521----------------4577529728872268864000
Q gi|254780537|r  178 EK-VDPE-KRWFVTSEGCLV----------------YLAEDFGFKSLYLWPINSDSER  217 (294)
Q Consensus       178 ~~-~p~~-~~~~v~~H~af~----------------Y~~~~yGl~~~~~~~~~~~~ep  217 (294)
                      -. =|.. +-.++.-|+.-|                -|++.-|+++--+ ..+++.+.
T Consensus       104 lp~d~~D~~nailEIrAGAGGtEA~dwA~mL~RMY~RwAE~~g~k~evi-d~s~ge~a  160 (360)
T PRK00591        104 LPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEIL-SASEGELG  160 (360)
T ss_pred             CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE-CCCCCCCC
T ss_conf             7999775678589996588874899999999999999998679971560-25776556


No 175
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=35.15  E-value=33  Score=14.98  Aligned_cols=65  Identities=23%  Similarity=0.237  Sum_probs=44.5

Q ss_pred             CCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             5214577529728872268864000789999999762016971899827899799999999829934443
Q gi|254780537|r  193 CLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV  262 (294)
Q Consensus       193 af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~  262 (294)
                      ++.-.++.+|++.+.+.+  ++...+|.-++.+.+.+.  +++.++.-.-.+++.++.+++ .|+.++++
T Consensus       139 ayAlaae~lg~~~iYLEg--SGa~v~~e~V~~vk~~l~--~~~LivGGGIrs~e~a~~~~~-AgAD~IVv  203 (219)
T cd02812         139 AYALAAEYLGMPIVYLEY--SGAYGPPEVVRAVKKVLG--DTPLIVGGGIRSGEQAKEMAE-AGADTIVV  203 (219)
T ss_pred             HHHHHHHHHCCCEEEEEC--CCCCCCHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHH-CCCCEEEE
T ss_conf             999999982993899956--899799999999998467--970999289799999999998-69999998


No 176
>PRK10307 predicted glycosyl transferase; Provisional
Probab=35.04  E-value=33  Score=14.97  Aligned_cols=19  Identities=16%  Similarity=0.246  Sum_probs=11.8

Q ss_pred             HHHHHHHHCCCEEEEEEEE
Q ss_conf             9999998518914899962
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTLV   51 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~li   51 (294)
                      .+++++.++....+|+.+.
T Consensus        21 ~~~La~~L~~~GheV~Vit   39 (415)
T PRK10307         21 TGEMAEWLAARGHEVRVIT   39 (415)
T ss_pred             HHHHHHHHHHCCCEEEEEE
T ss_conf             9999999997899899997


No 177
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=34.85  E-value=33  Score=14.95  Aligned_cols=61  Identities=11%  Similarity=0.043  Sum_probs=44.7

Q ss_pred             HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf             775297288722688640007899999997620169718998278997999999998299344
Q gi|254780537|r  198 AEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG  260 (294)
Q Consensus       198 ~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~  260 (294)
                      .+.-++.+..+.+  +..+....-..++.+.+|+.+..+|.-.-.-=+..+++|+++.|+|++
T Consensus       141 vrstdl~vL~l~~--~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVI  201 (230)
T COG4126         141 VRSTDLPVLALEG--PPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVI  201 (230)
T ss_pred             EEECCCCCCCCCC--CHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf             2337987010369--767899999999999865328888998582177799999997199846


No 178
>TIGR00559 pdxJ pyridoxal phosphate biosynthetic protein PdxJ; InterPro: IPR004569    Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy .   PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic .   In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised , , . This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm.
Probab=34.78  E-value=33  Score=14.94  Aligned_cols=41  Identities=12%  Similarity=0.222  Sum_probs=27.8

Q ss_pred             HHH-HHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             899-999997620169718-99827899799999999829934443
Q gi|254780537|r  219 PSM-MRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGV  262 (294)
Q Consensus       219 ~~~-l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~  262 (294)
                      .++ |.++++.+++.||.+ ||.+++  ...++. |.|+|++.+++
T Consensus       111 ~~dkL~~~~~~~~~~GI~vSlFId~~--~d~i~~-A~e~g~~~iE~  153 (265)
T TIGR00559       111 LKDKLKELVKRLHEAGIEVSLFIDAD--KDQISA-AAEVGADRIEI  153 (265)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEECCC--HHHHHH-HHHCCCCEEEE
T ss_conf             04679999999986798587742544--688899-99708984885


No 179
>pfam00731 AIRC AIR carboxylase. Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.
Probab=34.69  E-value=33  Score=14.93  Aligned_cols=46  Identities=22%  Similarity=0.222  Sum_probs=27.6

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             0789999999762016971899827899799999999829934443
Q gi|254780537|r  217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV  262 (294)
Q Consensus       217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~  262 (294)
                      .+|.++.++.+..++++++++++--..+..+.-.+|..|..|++++
T Consensus        39 Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpGvvA~~T~~PVIgV   84 (150)
T pfam00731        39 RTPERLFEYAKEAEARGIKVIIAGAGGAAHLPGMVAALTTLPVIGV   84 (150)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCCEEEC
T ss_conf             3878999999999975973999956842012000176479966857


No 180
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=34.66  E-value=34  Score=14.93  Aligned_cols=24  Identities=17%  Similarity=0.433  Sum_probs=16.3

Q ss_pred             CHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf             712457760378999988761068
Q gi|254780537|r   63 TSADAIKIQNADLILCNGLHLEET   86 (294)
Q Consensus        63 tp~d~~~i~~Adliv~~G~~~E~~   86 (294)
                      ++.....+++||+++..|..|..+
T Consensus       271 ~~~a~~~l~~aDlvl~lG~~l~~~  294 (588)
T CHL00099        271 TAYANFAVSECDLLIALGARFDDR  294 (588)
T ss_pred             CHHHHHHHHCCCHHEECCCCCCCC
T ss_conf             999987764241110048867866


No 181
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=34.50  E-value=34  Score=14.91  Aligned_cols=65  Identities=15%  Similarity=0.164  Sum_probs=37.7

Q ss_pred             CCCCEEEEE---CHHHHHHHHHHCCCE-EEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf             588289997---528999999851891-48999626889801202271245776037899998876106899999742
Q gi|254780537|r   21 TQKKVVLSS---FSIIGDITQNIAKDL-VTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNL   94 (294)
Q Consensus        21 ~~~~~Vv~s---~~pl~~iv~~I~gd~-v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~   94 (294)
                      +++++|.+.   ..|+..+.++--..+ ++|..=.  |.+...    .+++..-..+|+|+.-.   +.|+.++....
T Consensus        29 ~~~i~VfAAaSL~~~l~~i~~~F~~~~~~~V~~~f--~gS~~l----~~qIe~Ga~~D~fiSa~---~~~~~~l~~~g   97 (258)
T COG0725          29 AATITVFAAASLTDALEEIAKQFEKETGVKVEVEF--GGSGAL----ARQIEQGAPADLFISAD---DAYMDKLEDKG   97 (258)
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEE--CCHHHH----HHHHHCCCCCCEEEECC---HHHHHHHHHCC
T ss_conf             74099998156689999999999998798799996--138999----99997599868799888---88899998668


No 182
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=34.16  E-value=34  Score=14.88  Aligned_cols=20  Identities=10%  Similarity=0.366  Sum_probs=9.1

Q ss_pred             CHHHHHHHHHHHCCCCCEEE
Q ss_conf             78999999976201697189
Q gi|254780537|r  218 SPSMMRHAINQMRSHKIKFI  237 (294)
Q Consensus       218 s~~~l~~~~~~ik~~~v~~i  237 (294)
                      +..++.++.+.|++.+.++|
T Consensus       202 ~~~~~~~~~~~i~~~~~rVi  221 (348)
T cd06350         202 TEEDIKRILKKLKSSTARVI  221 (348)
T ss_pred             CHHHHHHHHHHHHCCCCCEE
T ss_conf             87899999999970787199


No 183
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=34.13  E-value=17  Score=16.92  Aligned_cols=17  Identities=12%  Similarity=0.136  Sum_probs=8.0

Q ss_pred             EEEEECCCCHHHHHHCC
Q ss_conf             69982665214577529
Q gi|254780537|r  186 WFVTSEGCLVYLAEDFG  202 (294)
Q Consensus       186 ~~v~~H~af~Y~~~~yG  202 (294)
                      .|+.....++|..+++.
T Consensus       430 ~F~~g~~~T~~i~r~~~  446 (645)
T COG4770         430 RFRGGDLDTGFIAREIE  446 (645)
T ss_pred             CCCCCCCCCEEEEECCC
T ss_conf             40047776302111023


No 184
>PRK08316 acyl-CoA synthetase; Validated
Probab=34.06  E-value=34  Score=14.87  Aligned_cols=16  Identities=6%  Similarity=-0.041  Sum_probs=5.4

Q ss_pred             CEEEEECHHHHHHHHH
Q ss_conf             2899975289999998
Q gi|254780537|r   24 KVVLSSFSIIGDITQN   39 (294)
Q Consensus        24 ~~Vv~s~~pl~~iv~~   39 (294)
                      ++++.+...+...++.
T Consensus       109 ~~~vi~~~~~~~~~~~  124 (525)
T PRK08316        109 AKLLLVDPALAPRAEA  124 (525)
T ss_pred             CEEEEECHHHHHHHHH
T ss_conf             8699988778888999


No 185
>pfam02153 PDH Prephenate dehydrogenase. Members of this family are prephenate dehydrogenases EC:1.3.1.12 involved in tyrosine biosynthesis.
Probab=33.97  E-value=34  Score=14.86  Aligned_cols=82  Identities=10%  Similarity=0.050  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCE-------EEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             5337899886307844736998266521457752972-------887226886400078999999976201697189982
Q gi|254780537|r  168 NSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFK-------SLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE  240 (294)
Q Consensus       168 ~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~-------~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e  240 (294)
                      .....+...+...-.....||..||=+|-  +..|+.       .-...-+.|.....+..+..+.++.+.-|-+++...
T Consensus        80 SvK~~i~~~~~~~~~~~~~fvg~HPMaG~--e~sG~~~a~~~LF~~~~~il~p~~~~~~~~~~~v~~l~~~lGa~~~~m~  157 (258)
T pfam02153        80 SVKVEIVKDAEQLLSDGVGFIPGHPMAGT--EKSGPDAARANLFENAPVILTPTEKTDTEALALVRELLEGIGAKVILMD  157 (258)
T ss_pred             CCCHHHHHHHHHHCCCCCCEECCCCCCCC--CCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf             55579999999855567864605886478--7677011001254171599618888879999999999998699699827


Q ss_pred             CCCCHHHHHHH
Q ss_conf             78997999999
Q gi|254780537|r  241 STNSDQPAKQV  251 (294)
Q Consensus       241 ~~~~~~~~~~i  251 (294)
                      +....+.+..+
T Consensus       158 ~~~HD~~~A~~  168 (258)
T pfam02153       158 PEEHDRVVALV  168 (258)
T ss_pred             HHHHHHHHHHH
T ss_conf             77788999999


No 186
>TIGR00839 aspA aspartate ammonia-lyase; InterPro: IPR004708 A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown ,  to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes.   Aspartate ammonia-lyase catalyses the conversion of aspartate to fumarate.; GO: 0008797 aspartate ammonia-lyase activity, 0006531 aspartate metabolic process.
Probab=33.94  E-value=13  Score=17.68  Aligned_cols=184  Identities=16%  Similarity=0.124  Sum_probs=92.6

Q ss_pred             HCCCCEEEEECCCCCHHHHHHHHHCCCCCC-----CCCCCCCCCHHHHHHCCCCCCCCCHHHHHH-------HHHHHHHH
Q ss_conf             603789999887610689999974235575-----211123742022210012334630111221-------35678999
Q gi|254780537|r   70 IQNADLILCNGLHLEETYMKYFTNLKKGTK-----IITVTDGINPIGVSEDTSVDSEPNPHAWMS-------LTNAMIYI  137 (294)
Q Consensus        70 i~~Adliv~~G~~~E~~~~~~~~~~~~~~~-----~i~~~~~i~~~~~~~~~~~~~~~dpH~Wld-------p~~~~~~a  137 (294)
                      ++=+|.++.+|.-+|.|..+.++-......     -|-+.-+++.+.+..+...+-.+|-|+=.|       |...+..+
T Consensus        72 v~AcDe~l~~GK~~DQFivD~~QGGAGTS~NMN~NEViaN~ALE~mGH~KGeY~~~~PndHVN~sQStNDayPta~~Ia~  151 (469)
T TIGR00839        72 VAACDEILETGKCHDQFIVDVIQGGAGTSVNMNTNEVIANLALEIMGHKKGEYQFLNPNDHVNRSQSTNDAYPTALRIAV  151 (469)
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             99999998568710022244333887654223067899998887625514662120886510224666664401789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCC
Q ss_conf             999999864318889999998998630145533789988630-7844736998266521457752972887226886400
Q gi|254780537|r  138 ENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEK-VDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSE  216 (294)
Q Consensus       138 ~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~-~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~e  216 (294)
                      -.--..|++.--.=.+.|.+-+++|..=|    +=-++++.+ +|-      +       +.++|---  ++.     -+
T Consensus       152 y~~L~kL~~~~~~l~~~F~~KA~EF~~vi----KMGRTqLQDAVPm------t-------lGQEF~ay--~~~-----l~  207 (469)
T TIGR00839       152 YKSLEKLVDTMEDLRDAFKQKAKEFASVI----KMGRTQLQDAVPM------T-------LGQEFEAY--ALL-----LE  207 (469)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCCCCCCCCC------C-------CCHHHHHH--HHH-----HH
T ss_conf             99999999999999999988889988886----2167545453235------5-------56048999--999-----99


Q ss_pred             CCHHHHHHHHHHHCCC--CCEEEEEECCCC----HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHH
Q ss_conf             0789999999762016--971899827899----799999999829934443201237877788689999
Q gi|254780537|r  217 RSPSMMRHAINQMRSH--KIKFIFSESTNS----DQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLD  280 (294)
Q Consensus       217 ps~~~l~~~~~~ik~~--~v~~if~e~~~~----~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~  280 (294)
                      ---+++++.++.+.|=  |..+|-+--+.+    +-+.+.||+=||.+.+.   -|.|=+.-...+-|..
T Consensus       208 ~di~~~~~~~~~l~EvNlGaTAiGTGlN~~~~Y~~lvvK~laevtG~p~V~---A~~LieAT~~tgAYv~  274 (469)
T TIGR00839       208 RDIKNIKRTRQLLLEVNLGATAIGTGLNTPPEYIKLVVKKLAEVTGLPLVP---AENLIEATQDTGAYVE  274 (469)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCC---HHHHHHHHCCCCCEEE
T ss_conf             999999999877877634751021577877113899988764116886425---2357775338996266


No 187
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=33.76  E-value=35  Score=14.84  Aligned_cols=68  Identities=21%  Similarity=0.141  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH
Q ss_conf             78999999999864318889999998998630145533789988630784473699826652145775
Q gi|254780537|r  133 AMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAED  200 (294)
Q Consensus       133 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~  200 (294)
                      .+.-.+.|-..|-+++-+++...-.=-++|.++=.-+-..-+..+..+|.=....+..||+++|+...
T Consensus        30 ~i~dfe~IQ~~Le~ld~ecakeqm~iQrkfdekKrP~f~kR~~IIeKIPgFW~~al~~HP~ls~Li~e   97 (288)
T PTZ00008         30 FMKDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIEKIPGFWANTLRKHPALSDIVPE   97 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCC
T ss_conf             57789999999999889999999999999887507468899999986623999998719616640313


No 188
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=33.64  E-value=35  Score=14.82  Aligned_cols=31  Identities=16%  Similarity=0.139  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             6431888999999899863014553378998
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKT  175 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~  175 (294)
                      .-+.|.++-......+++.-+++.-.+....
T Consensus       244 ~~~~p~~a~l~lRGL~TL~lRm~r~~~nA~~  274 (397)
T PRK07504        244 PSLSPFNAWVLLKGLETLAVRVRQQTESAAA  274 (397)
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             8788378899871677299999999999999


No 189
>PRK10290 superoxide dismutase; Provisional
Probab=33.42  E-value=30  Score=15.29  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=12.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCCC
Q ss_conf             926999999999860464335
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATT   21 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~   21 (294)
                      |||+.++++.++++.++++.+
T Consensus         1 mk~~~~~~~~l~~~~~~~a~~   21 (173)
T PRK10290          1 MKRFSLAILALVVCTGAQAAS   21 (173)
T ss_pred             CCHHHHHHHHHHHHHHHHHCC
T ss_conf             910799999999976665144


No 190
>PRK07050 cystathionine beta-lyase; Provisional
Probab=33.29  E-value=35  Score=14.79  Aligned_cols=85  Identities=6%  Similarity=0.034  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCC------CHHHHHHC-CCEEEEECCCCCCCCC
Q ss_conf             6431888999999899863014553378998863078447369982665------21457752-9728872268864000
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGC------LVYLAEDF-GFKSLYLWPINSDSER  217 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~a------f~Y~~~~y-Gl~~~~~~~~~~~~ep  217 (294)
                      .-+.|..+-......+++.-+++.-.+......+-+....++--++||.      +..+.+.+ |..  ++..+.-....
T Consensus       244 ~~~sp~~a~l~~rGL~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~~a~~~~~g~g--g~~s~~~~~~~  321 (394)
T PRK07050        244 IGVSADDCSLVLRGLPSMQVRFDAHSRSALELAQWLKARPEIATVLHPALPDCPGHAFWMRDFTGAG--GLFSVVFDERY  321 (394)
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCC--EEEEEEECCCC
T ss_conf             7789899999974898478889999999999999986189810898999889815999997579996--28999975667


Q ss_pred             CHHHHHHHHHHHCC
Q ss_conf             78999999976201
Q gi|254780537|r  218 SPSMMRHAINQMRS  231 (294)
Q Consensus       218 s~~~l~~~~~~ik~  231 (294)
                      ++..+.++.+.+|=
T Consensus       322 ~~~~~~~f~~~l~l  335 (394)
T PRK07050        322 DAAQVDAFVEALEL  335 (394)
T ss_pred             CHHHHHHHHHHCCC
T ss_conf             99999999983882


No 191
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704   At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=33.29  E-value=35  Score=14.78  Aligned_cols=59  Identities=14%  Similarity=0.112  Sum_probs=34.2

Q ss_pred             CCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf             6652145775297288722688640007899999997620169718998278997999999998299344
Q gi|254780537|r  191 EGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG  260 (294)
Q Consensus       191 H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~  260 (294)
                      -|++.-|.+.|||.+.      .-.=.|..|=..-+..+|..||++|+     ..-++--+|++.|...+
T Consensus       109 ~p~~~~Fq~~f~l~~~------~r~y~t~eDAr~~v~~Lra~G~~~vV-----G~GL~tDlA~~AgL~gv  167 (658)
T TIGR02329       109 VPALREFQKAFNLDIE------QRSYVTEEDARSCVNDLRASGIEVVV-----GAGLITDLAEQAGLVGV  167 (658)
T ss_pred             HHHHHHHHHHHCCCHH------HHHHCCHHHHHHHHHHHHHCCCEEEE-----CCCHHHHHHHHCCCCEE
T ss_conf             4679999998634168------87504677899999999768975988-----76568888876796478


No 192
>pfam08139 LPAM_1 Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.
Probab=32.80  E-value=33  Score=14.95  Aligned_cols=20  Identities=15%  Similarity=0.246  Sum_probs=12.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCC
Q ss_conf             92699999999986046433
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASAT   20 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~   20 (294)
                      |||.+..+++.+.+.+|++.
T Consensus         1 Mkk~~~l~~~~l~LagCas~   20 (26)
T pfam08139         1 MKKLLLLLLALLLLAGCASX   20 (26)
T ss_pred             CHHHHHHHHHHHHHHCCCCC
T ss_conf             96699999999998233200


No 193
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase; InterPro: IPR010138   This entry represents LpxH, or UDP-2,3-diacylglucosamine hydrolase (or pyrophosphatase), which is an essential enzyme in Escherichia coli that catalyses the fourth step in lipid A biosynthesis. This reaction involves pyrophosphate bond hydrolysis of the precursor UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate and UMP . Several Gram-negative bacteria have homologues of LpxH and/or LpxH2, while others have only distant orthologues of LpxH or LpxH2, or lack these enzymes altogether .; GO: 0016462 pyrophosphatase activity, 0009245 lipid A biosynthetic process, 0005737 cytoplasm.
Probab=32.77  E-value=36  Score=14.73  Aligned_cols=47  Identities=17%  Similarity=0.177  Sum_probs=32.8

Q ss_pred             CCCCC--HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf             40007--899999997620169718998278997999999998299344
Q gi|254780537|r  214 DSERS--PSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG  260 (294)
Q Consensus       214 ~~eps--~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~  260 (294)
                      +.+||  .+.+++.++.+-+.||+|.|.-.|=.==+-+.-|+|+|.+..
T Consensus        48 DD~~~~l~~~va~~~r~vsd~GV~~YF~~GNRDFLiG~~Far~aG~~LL   96 (241)
T TIGR01854        48 DDDPSALARSVAEAIRAVSDQGVPCYFMHGNRDFLIGKRFAREAGMTLL   96 (241)
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCEEC
T ss_conf             8972179999999999873289079840598515666899997088107


No 194
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=32.63  E-value=27  Score=15.55  Aligned_cols=22  Identities=14%  Similarity=0.161  Sum_probs=13.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             9269999999998604643358
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQ   22 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~   22 (294)
                      |+|.+++.+.++.+.+|++..+
T Consensus         1 Mrk~~~~~l~~~lLvGCsS~~~   22 (123)
T COG5633           1 MRKLCLLSLALLLLVGCSSHQE   22 (123)
T ss_pred             CCEEHHHHHHHHHHHCCCCCCC
T ss_conf             9300389999999420478877


No 195
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 .    Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=32.62  E-value=23  Score=15.97  Aligned_cols=39  Identities=23%  Similarity=0.413  Sum_probs=25.1

Q ss_pred             CCHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf             2712457760378999988-761068999997423557521112
Q gi|254780537|r   62 VTSADAIKIQNADLILCNG-LHLEETYMKYFTNLKKGTKIITVT  104 (294)
Q Consensus        62 ~tp~d~~~i~~Adliv~~G-~~~E~~~~~~~~~~~~~~~~i~~~  104 (294)
                      .|-+=.+-|++||+|+|=| +=-+.+    ++...++.++++.+
T Consensus        14 ITvkG~~lle~ADvilYAGSLV~~~~----L~~~r~~Ae~~~sA   53 (252)
T TIGR01465        14 ITVKGRKLLESADVILYAGSLVPPEL----LAHCRPGAEVVNSA   53 (252)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCHHHH----HHHCCCCCEEEECC
T ss_conf             75999988631997999687781789----97278988886050


No 196
>PRK09028 cystathionine beta-lyase; Provisional
Probab=32.43  E-value=36  Score=14.69  Aligned_cols=31  Identities=6%  Similarity=0.006  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             6431888999999899863014553378998
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKT  175 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~  175 (294)
                      .-+.|.++-......+++.-+++.-.+....
T Consensus       239 ~~~sP~~a~L~lRGL~TL~lRm~r~~~nA~~  269 (394)
T PRK09028        239 QCTSPDDVYLAARGLRTLGVRLAQHEKNALK  269 (394)
T ss_pred             CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             7788789999983678599999999999999


No 197
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=32.39  E-value=36  Score=14.69  Aligned_cols=19  Identities=11%  Similarity=0.179  Sum_probs=10.4

Q ss_pred             HHHHHHHHCCCEEEEEEEE
Q ss_conf             9999998518914899962
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTLV   51 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~li   51 (294)
                      ..++++.++....+|+.+.
T Consensus        21 v~~La~~L~~~Gh~V~v~t   39 (363)
T cd04955          21 VEELAPRLVARGHEVTVYC   39 (363)
T ss_pred             HHHHHHHHHHCCCEEEEEE
T ss_conf             9999999997799799998


No 198
>pfam02669 KdpC K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.
Probab=32.35  E-value=6  Score=19.97  Aligned_cols=98  Identities=14%  Similarity=0.132  Sum_probs=44.0

Q ss_pred             EEE-CCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC--CCHHHHHHCCCCCCCCCHH
Q ss_conf             962-6889801202271245776037899998876106899999742355752111237--4202221001233463011
Q gi|254780537|r   49 TLV-EAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDG--INPIGVSEDTSVDSEPNPH  125 (294)
Q Consensus        49 ~li-~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~~~~~~~~~dpH  125 (294)
                      .|+ ++=++|.-|.+.|+.+..- .-|..-.-|-++-+.-.++.+........+...+.  -..++.+-=....++-|||
T Consensus        53 ~LIgQ~F~~~~yF~~RPSa~~~~-~y~~~~SggSNl~psnp~l~~~v~~r~~~~~~~~~~~~~~vP~DlVTaSgSGLDPh  131 (188)
T pfam02669        53 ALIGQTFTEEGYFHSRPSAINYS-EYPTGASGGSNLAPSNPDLLSRIAARVEAQRLENLPAAVQVPVDLVTSSGSGLDPH  131 (188)
T ss_pred             HHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf             32277788998767898667799-98844466657799999999999999999998778988889788840666668999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1221356789999999998643188
Q gi|254780537|r  126 AWMSLTNAMIYIENIRKALTALDPS  150 (294)
Q Consensus       126 ~Wldp~~~~~~a~~I~~~L~~~dP~  150 (294)
                      +  ||.++..++.-|+++ ..++++
T Consensus       132 I--S~aaA~~Qv~RVA~a-rgls~~  153 (188)
T pfam02669       132 I--SPAAAQAQFPRVAKA-RNISPQ  153 (188)
T ss_pred             C--CHHHHHHHHHHHHHH-HCCCHH
T ss_conf             8--999999999999998-496999


No 199
>pfam09403 FadA Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.
Probab=32.20  E-value=23  Score=15.98  Aligned_cols=16  Identities=19%  Similarity=0.521  Sum_probs=6.2

Q ss_pred             CHHHHHHHHHHHHHCC
Q ss_conf             9269999999998604
Q gi|254780537|r    1 MLRYFICLLFSYIPMS   16 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~   16 (294)
                      |+|+|++.+++++..+
T Consensus         1 MkK~ll~~~llls~~s   16 (126)
T pfam09403         1 MKKILLCSMLILSSLS   16 (126)
T ss_pred             CHHHHHHHHHHHHHHH
T ss_conf             9169999999999999


No 200
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=32.07  E-value=37  Score=14.65  Aligned_cols=69  Identities=17%  Similarity=0.221  Sum_probs=45.6

Q ss_pred             HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE-EEECC--------------CCHHHHHHHHHHHCCCEEE
Q ss_conf             57752972887226886400078999999976201697189-98278--------------9979999999982993444
Q gi|254780537|r  197 LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFI-FSEST--------------NSDQPAKQVAYETNASYGG  261 (294)
Q Consensus       197 ~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~i-f~e~~--------------~~~~~~~~ia~e~~~~~~~  261 (294)
                      +.+.......-+. ..| ...|..+..+.+++.++.+++.+ +.|.-              +...-++.++++.+++..+
T Consensus        86 ~~~~~~~d~~IvV-TTP-~~~s~~Da~r~i~~~~~~~i~i~GvVeNMs~~~c~~c~~~~~ifg~~~~~~la~~~~i~~Lg  163 (169)
T cd02037          86 LAQSLPIDGAVIV-TTP-QEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLG  163 (169)
T ss_pred             HHHHCCCCCEEEE-ECC-CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEE
T ss_conf             9875056747999-469-58899999999999997599707999879666079999735278884499999995999898


Q ss_pred             EEECCC
Q ss_conf             320123
Q gi|254780537|r  262 VLYVDS  267 (294)
Q Consensus       262 ~~~~d~  267 (294)
                      .++.|+
T Consensus       164 ~IP~dp  169 (169)
T cd02037         164 KIPLDP  169 (169)
T ss_pred             ECCCCC
T ss_conf             728999


No 201
>TIGR00885 fucP L-fucose:H+ symporter permease; InterPro: IPR005275    This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by at least four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. .
Probab=32.04  E-value=14  Score=17.52  Aligned_cols=61  Identities=16%  Similarity=0.246  Sum_probs=51.5

Q ss_pred             CCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCC----CCCCCHHHHHHHCCCCEEEEEC
Q ss_conf             358828999752899999985189148999626889801----2022712457760378999988
Q gi|254780537|r   20 TTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSH----SYQVTSADAIKIQNADLILCNG   80 (294)
Q Consensus        20 ~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH----~ye~tp~d~~~i~~Adliv~~G   80 (294)
                      ++.+++..=|++|++++.--..|.+.=...+-+.++|..    --.+++++...++++|+.....
T Consensus       128 atrRLNlAQsFNp~Gsi~g~~va~~lil~nl~~~~~D~~Gnlif~~ls~~e~~aik~sdla~~~~  192 (427)
T TIGR00885       128 ATRRLNLAQSFNPLGSIIGMVVAQQLILSNLESQSQDVLGNLIFDKLSEEELSAIKESDLASVRT  192 (427)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf             21022256302157899999999898863288766425787898842978888864655766612


No 202
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=31.98  E-value=33  Score=14.93  Aligned_cols=18  Identities=17%  Similarity=0.062  Sum_probs=9.6

Q ss_pred             CCHHHHHHHHHHHCCCEE
Q ss_conf             997999999998299344
Q gi|254780537|r  243 NSDQPAKQVAYETNASYG  260 (294)
Q Consensus       243 ~~~~~~~~ia~e~~~~~~  260 (294)
                      +-.+++..+-+..++++-
T Consensus       263 ~~~~vi~k~lk~anVkik  280 (298)
T PRK04405        263 VMQNVISKVLKKANVSIK  280 (298)
T ss_pred             HHHHHHHHHHHHCCCCCC
T ss_conf             999999999997798715


No 203
>TIGR01437 selA_rel pyridoxal phosphate-dependent enzyme, putative; InterPro: IPR006337    Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy .   PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic .   This entry represents a group of proteins that are related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. .
Probab=31.84  E-value=37  Score=14.63  Aligned_cols=135  Identities=16%  Similarity=0.205  Sum_probs=69.6

Q ss_pred             CHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHH--HCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             5289999998518914899962688980120227124577--60378999988761068999997423557521112374
Q gi|254780537|r   30 FSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIK--IQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGI  107 (294)
Q Consensus        30 ~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~--i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i  107 (294)
                      ..|+.++++ ||..+ .|=.|+..-..    -|.-.|+.+  =..|||++|+|.       |.+....++.-++--.+.|
T Consensus       168 l~P~~~~~~-vA~~~-~vPlIVDAAAe----iPP~edL~~y~~~GaDlViYSGa-------Ka~~gpsnsGl~vGrK~~I  234 (391)
T TIGR01437       168 LLPVEEVIR-VAQSY-KVPLIVDAAAE----IPPEEDLTRYLKAGADLVIYSGA-------KALEGPSNSGLVVGRKDYI  234 (391)
T ss_pred             CCCHHHHHH-HHHHC-CCCEEEECCCC----CCCHHHHHHHHHHCCCEEEECCH-------HHCCCCCCCCEEECHHHHH
T ss_conf             663899999-99756-89889862568----98801468999716875553203-------4504643263233008899


Q ss_pred             CHHHHHHCCCCCCCCCH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             20222100123346301-112------21356789999999998643188899999989986301455337899886
Q gi|254780537|r  108 NPIGVSEDTSVDSEPNP-HAW------MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRI  177 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~dp-H~W------ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~  177 (294)
                      .-....+.+..+.++|- .++      .+=+|+...+.++.+.|.--+-.-...-+.+++.+.+-+.+++..+..+.
T Consensus       235 ~~~~~~g~gseenGPDGtrvfIgRaMKIgKe~ivg~v~AvE~yl~~~~e~~~~k~~~~l~p~a~aIs~i~~l~a~iv  311 (391)
T TIGR01437       235 AAAKSQGKGSEENGPDGTRVFIGRAMKIGKENIVGLVAAVERYLTFNDEDWLRKQRSRLDPIAEAISDIDDLMAKIV  311 (391)
T ss_pred             HHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_conf             99986288765668986568873265103689999999999985168726789999984369999852410112356


No 204
>cd01144 BtuF Cobalamin binding protein BtuF.  These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species.  They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism.  A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.48  E-value=38  Score=14.59  Aligned_cols=107  Identities=13%  Similarity=0.083  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEE---------EECCCCHHHHHH
Q ss_conf             35678999999999864318889999998998630145533789988630784473699---------826652145775
Q gi|254780537|r  130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFV---------TSEGCLVYLAED  200 (294)
Q Consensus       130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v---------~~H~af~Y~~~~  200 (294)
                      ++........+++.+.+-  +.+       +++.+++++-...++++....+.. +.++         ..+..++.+.+.
T Consensus        91 ~~~~~~~i~~lg~i~g~~--~~A-------~~~i~~~~~~l~~i~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~  160 (245)
T cd01144          91 LDDILADIRRLGTLAGRP--ARA-------EELAEALRRRLAALRKQYASKPPP-RVFYQEWIDPLMTAGGDWVPELIAL  160 (245)
T ss_pred             HHHHHHHHHHHHHHCCCH--HHH-------HHHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCEECCCCCHHHHHHH
T ss_conf             999999999999874974--689-------999999999999999763267741-6898605787365176556899998


Q ss_pred             CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf             29728872268864000789999999762016971899827899799999999
Q gi|254780537|r  201 FGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAY  253 (294)
Q Consensus       201 yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~  253 (294)
                      .|.+.+.-.......+.|+..|       -+.+..+||.-....+...+.+.+
T Consensus       161 aG~~N~~~~~~~~~~~vs~E~i-------~~~nPDvI~v~~~~~~~~~~~~~~  206 (245)
T cd01144         161 AGGVNVFADAGERSPQVSWEDV-------LAANPDVIVLSPCGFGFTPAILRK  206 (245)
T ss_pred             CCCCEEHHHCCCCCCCCCHHHH-------HHHCCCEEEEECCCCCCHHHHHHC
T ss_conf             3881003222678777578899-------985999999958987516899870


No 205
>PTZ00151 translationally controlled tumor protein; Provisional
Probab=31.47  E-value=38  Score=14.59  Aligned_cols=37  Identities=16%  Similarity=0.345  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             5678999999999864318889999998998630145
Q gi|254780537|r  131 TNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIR  167 (294)
Q Consensus       131 ~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~  167 (294)
                      ...+.+...|...|.+..|+.-+.|.+++..+.+.+.
T Consensus        91 ~yiK~YmK~v~~kLee~~perV~~Fk~~a~~~vK~il  127 (173)
T PTZ00151         91 SYIKKYIQRIVAYLEEKNPDRVEPFKTKAQPFVKHVL  127 (173)
T ss_pred             HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999999999863298899999998899999997


No 206
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=31.29  E-value=38  Score=14.57  Aligned_cols=45  Identities=20%  Similarity=0.222  Sum_probs=20.7

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf             078999999976201697189982789979999999982993444
Q gi|254780537|r  217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGG  261 (294)
Q Consensus       217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~  261 (294)
                      .||..+.+..+..++.++++|+.--.-...+---+|..|-.++++
T Consensus        41 RTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViG   85 (162)
T COG0041          41 RTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIG   85 (162)
T ss_pred             CCHHHHHHHHHHHHHCCCEEEEECCCCHHHCCHHHHHCCCCCEEE
T ss_conf             798999999999987897599965751110620265558798674


No 207
>TIGR02992 ectoine_eutC ectoine utilization protein EutC; InterPro: IPR014334   Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine). Members belong to the ornithine cyclodeaminase/mu-crystallin family..
Probab=31.22  E-value=38  Score=14.56  Aligned_cols=64  Identities=14%  Similarity=0.156  Sum_probs=26.7

Q ss_pred             HHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57760378999988761068999997423557521112374202221001233463011122135678999999999864
Q gi|254780537|r   67 AIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTA  146 (294)
Q Consensus        67 ~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~  146 (294)
                      .++++.||++|+.-..-.|-+..  +-++++.-++..         ..|..|.++.|||+      ..+.-..++|.+++
T Consensus       189 ~~A~~~ADI~vTtTP~~~Pvl~a--~wL~pGqh~tAM---------GsD~EHKnE~~P~~------~a~a~~YVaD~~~Q  251 (326)
T TIGR02992       189 RAALSGADIIVTTTPSETPVLKA--EWLEPGQHVTAM---------GSDAEHKNEIDPAV------IAKADLYVADRLSQ  251 (326)
T ss_pred             HHHCCCCCEEEECCCCCCCCHHH--HHCCCCCEEEEE---------CCCCCCCCCCCHHH------HHHHHCCCCCCHHH
T ss_conf             86236688798748798730207--336788789860---------67701223436478------85411156665688


Q ss_pred             H
Q ss_conf             3
Q gi|254780537|r  147 L  147 (294)
Q Consensus       147 ~  147 (294)
                      .
T Consensus       252 t  252 (326)
T TIGR02992       252 T  252 (326)
T ss_pred             H
T ss_conf             7


No 208
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=31.16  E-value=30  Score=15.24  Aligned_cols=21  Identities=10%  Similarity=0.233  Sum_probs=13.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCCC
Q ss_conf             926999999999860464335
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATT   21 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~   21 (294)
                      |++.++.+++.+++++|....
T Consensus         1 m~~~i~~i~~~~~~~sC~~~e   21 (177)
T TIGR03516         1 MKHLIAVILLLLLLLGCKTPE   21 (177)
T ss_pred             CCCHHHHHHHHHHHHHCCCCC
T ss_conf             943047898989987269964


No 209
>TIGR01522 ATPase-IIA2_Ca calcium-transporting P-type ATPase, PMR1-type; InterPro: IPR006413   This family describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates . The calcium P-type ATPases have been characterised as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump  represented by IPR006408 from INTERPRO. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=31.10  E-value=38  Score=14.55  Aligned_cols=90  Identities=14%  Similarity=0.162  Sum_probs=61.9

Q ss_pred             HHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf             99863014553378998863078447369982665214577529728872268864000789999999762016971899
Q gi|254780537|r  159 AREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIF  238 (294)
Q Consensus       159 ~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if  238 (294)
                      ..+|.++..+--++.+...++   ++..++    ||.|. ...+|...|+.|+..   |.--++++.++.+-..||++| 
T Consensus       454 t~~Lt~~~k~~~~~~~~~Ma~---~GLRv~----A~A~~-~~~~L~F~GL~G~~D---PPRp~V~~Av~~L~~gGV~v~-  521 (856)
T TIGR01522       454 TEELTEEQKEKIQEEAAEMAS---EGLRVI----AFASG-TEKDLVFLGLVGIND---PPRPDVKEAVERLLTGGVRVI-  521 (856)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC---CCCEEE----EEEEC-CCCCCEEEEEECCCC---CCCCCCHHHHHHHHHCCCEEE-
T ss_conf             157789999999898763200---666466----56522-568715761002659---224862689999842891899-


Q ss_pred             EECCCCHHHHHHHHHHHCCCEE
Q ss_conf             8278997999999998299344
Q gi|254780537|r  239 SESTNSDQPAKQVAYETNASYG  260 (294)
Q Consensus       239 ~e~~~~~~~~~~ia~e~~~~~~  260 (294)
                      .-++.|...|-.||+.+|.++.
T Consensus       522 MITGDS~~TAv~IA~~lG~~~~  543 (856)
T TIGR01522       522 MITGDSEETAVSIARRLGMPVK  543 (856)
T ss_pred             EECCCCHHHHHHHHHHCCCCCC
T ss_conf             9818728999999877286579


No 210
>PRK13280 N-glycosylase/DNA lyase; Provisional
Probab=30.78  E-value=39  Score=14.51  Aligned_cols=108  Identities=12%  Similarity=-0.008  Sum_probs=61.1

Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHH--HHHHHHHH--HCC
Q ss_conf             99899863014553378998863078447369982665214577529728872268864000789--99999976--201
Q gi|254780537|r  156 ELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPS--MMRHAINQ--MRS  231 (294)
Q Consensus       156 ~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~--~l~~~~~~--ik~  231 (294)
                      ..+.+.| ..+..+-..+...+.+ +...+++|-.---|+|.++..+-+..+.    |..=|=|-  +++.+...  +-+
T Consensus       121 ~~~l~~y-~~m~~l~~~La~~l~~-~~~~KTiVFAvKM~gYa~r~~~~~~~p~----p~eIpIPvD~Ri~~~T~~sglv~  194 (265)
T PRK13280        121 LNPLKYY-EDLEELLEDLAKILGA-KKESKTVVFAVKMFGYAYRAVFGEFRPY----PMEIPIPVDYRIAKLTLKSGLVE  194 (265)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHCC-CCCCCEEEEHHHHHHHHHHHHCCCCCCC----CCCCCCCCHHHHHHHHHHHHCCC
T ss_conf             3334676-2399999999999689-9875635336998999999946777789----86799963099999999741034


Q ss_pred             CCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf             69718998278997999999998299344432012378777
Q gi|254780537|r  232 HKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPD  272 (294)
Q Consensus       232 ~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~  272 (294)
                      ......-.-.....+....+|+++|+|   .+.+|++-..-
T Consensus       195 ~~~~~~~~~~e~~~~~W~~Va~~sgIP---pLhiDsilW~~  232 (265)
T PRK13280        195 GPPEEAMRTNEEPQEFWNKVARESGIP---PLHIDSILWLV  232 (265)
T ss_pred             CCHHHHHCCCCHHHHHHHHHHHHCCCC---CCCCCHHHHHC
T ss_conf             755554035324899999998862999---62010145322


No 211
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.74  E-value=39  Score=14.51  Aligned_cols=30  Identities=13%  Similarity=0.018  Sum_probs=18.6

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf             431888999999899863014553378998
Q gi|254780537|r  146 ALDPSNAKKYELNAREYSEKIRNSILPLKT  175 (294)
Q Consensus       146 ~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~  175 (294)
                      .+.|.++-......+++.-+++.-.+....
T Consensus       275 ~lsP~da~L~lRGL~TL~lRm~r~~~nA~~  304 (426)
T PRK05994        275 AISPFNAFLILTGIETLPLRMQRHSDNALA  304 (426)
T ss_pred             CCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             568167899972578389999999999999


No 212
>KOG0256 consensus
Probab=30.58  E-value=39  Score=14.49  Aligned_cols=39  Identities=21%  Similarity=0.253  Sum_probs=22.7

Q ss_pred             HHCCCEEEEECCCCCC----CCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf             7529728872268864----00078999999976201697189
Q gi|254780537|r  199 EDFGFKSLYLWPINSD----SERSPSMMRHAINQMRSHKIKFI  237 (294)
Q Consensus       199 ~~yGl~~~~~~~~~~~----~eps~~~l~~~~~~ik~~~v~~i  237 (294)
                      +..|+++-|+.-.+|.    .-.++.+|..+.+++++++|++|
T Consensus       221 ~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI  263 (471)
T KOG0256         221 RKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVI  263 (471)
T ss_pred             HHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEE
T ss_conf             9818952489982799977774699999999998864562798


No 213
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE.  NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively.  NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein.  NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.02  E-value=40  Score=14.43  Aligned_cols=147  Identities=13%  Similarity=0.107  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH----HHHHHCCC
Q ss_conf             21356789999999998643188899999989986301455337899886307844736998266521----45775297
Q gi|254780537|r  128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV----YLAEDFGF  203 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~----Y~~~~yGl  203 (294)
                      +-..+.......+++...+--|+.-..  ++     .++.+...+.+..+.    .+|..+...+.+.    -|+.+.|+
T Consensus       256 ~G~~~Td~fl~~l~~~~G~~vpe~~~~--er-----~rl~da~~d~h~~l~----gkrvai~gd~d~~~~l~~fL~ElG~  324 (417)
T cd01966         256 TGLEAVDALIATLAKLSGRPVPEKIRR--QR-----AQLQDAMLDGHFYLG----GKRVAIALEPDLLAALSSFLAEMGA  324 (417)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCHHHHH--HH-----HHHHHHHHHHHHHHC----CCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf             155878999999999828998499999--99-----999999999999856----9779998771699999999997899


Q ss_pred             EEEEECCCCCC--------CCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE--EECCCCCCCCC
Q ss_conf             28872268864--------000789999999762016971899827899799999999829934443--20123787778
Q gi|254780537|r  204 KSLYLWPINSD--------SERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV--LYVDSLSKPDG  273 (294)
Q Consensus       204 ~~~~~~~~~~~--------~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~--~~~d~l~~~~~  273 (294)
                      +...+...+..        .+.-..|+.++.+..+  ++..|+..     .-.+.+|++.+++...+  ...|-++.-..
T Consensus       325 ~~~~~~~~~~~~~~~~~~~~~v~~gDl~~le~~~~--~~dliig~-----s~~~~~A~~~~ipllr~gfPi~Dr~g~~~~  397 (417)
T cd01966         325 EIVAAVATTDSPALEKLPAEEVVVGDLEDLEDLAA--EADLLVTN-----SHGRQAAERLGIPLLRAGFPIFDRLGAAHK  397 (417)
T ss_pred             EEEEEEECCCCHHHHHCCCCEEEECCHHHHHHHCC--CCCEEEEC-----CCHHHHHHHCCCCEEEECCCHHHCCCCCCC
T ss_conf             88899978998577737657265078899984178--99999958-----736899998499989926970420575466


Q ss_pred             CCCCHHHHHHHHHHHHHHHC
Q ss_conf             86899999999999998620
Q gi|254780537|r  274 PAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       274 ~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      .--.|-++ .+-++.|.++|
T Consensus       398 ~~~GY~G~-~~Ll~~I~N~~  416 (417)
T cd01966         398 CTIGYRGT-RDLLFEIANLF  416 (417)
T ss_pred             CEECHHHH-HHHHHHHHHHH
T ss_conf             31456779-99999998863


No 214
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=30.02  E-value=40  Score=14.43  Aligned_cols=52  Identities=17%  Similarity=0.216  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEEECCC---CHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             00078999999976201697189982789---97999999998299344432012378
Q gi|254780537|r  215 SERSPSMMRHAINQMRSHKIKFIFSESTN---SDQPAKQVAYETNASYGGVLYVDSLS  269 (294)
Q Consensus       215 ~eps~~~l~~~~~~ik~~~v~~if~e~~~---~~~~~~~ia~e~~~~~~~~~~~d~l~  269 (294)
                      .++......++.+.+++.+++.++.....   ....++.||+..|....   ++|.+.
T Consensus       114 ~~~~~~~~~~~a~~~~~~gi~~~vId~~~~~~~~~~~~~LA~~~~g~Y~---~id~l~  168 (178)
T cd01451         114 PDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYV---RLPDLS  168 (178)
T ss_pred             CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEE---ECCCCC
T ss_conf             9951269999999998669978999799997674899999994299699---899799


No 215
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=29.97  E-value=27  Score=15.62  Aligned_cols=73  Identities=16%  Similarity=0.089  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEE
Q ss_conf             92699999999986046433588289997528999999851891489996268898012022712457760378999
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLIL   77 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv   77 (294)
                      |+|+++...+..+.+++++...   --....|++.- ++++|=.+--..+.|-...|.--+|+.++.----+||+-.
T Consensus         3 ~~k~l~~~~~~a~v~s~~a~~~---a~~~E~Pigep-~evg~meiaaVYlQpveMeP~G~~~~a~~aDiHlEADIha   75 (179)
T COG3470           3 MKKLLLSAAILASVFSAPAEGA---AAFKEVPIGEP-IEVGGMEIAAVYLQPVEMEPRGMQLPAAEADIHLEADIHA   75 (179)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCCCC-CCCCCEEEEEEEEEEEECCCCCCCCCHHHCCCEEEEEHHC
T ss_conf             6899999999999974100002---34463468997-3218748999996203034465798702136335331010


No 216
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.35  E-value=41  Score=14.35  Aligned_cols=35  Identities=6%  Similarity=0.162  Sum_probs=19.8

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             07899999997620169718998278997999999
Q gi|254780537|r  217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV  251 (294)
Q Consensus       217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i  251 (294)
                      +...+..++.+.+++.++..+|......+..+..|
T Consensus        92 i~~~d~~~~~~~l~~~Gv~~vF~pGt~~~e~i~~~  126 (128)
T cd02072          92 VGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADL  126 (128)
T ss_pred             CCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHH
T ss_conf             78310489999999669685749987999999998


No 217
>PRK10449 heat-inducible protein; Provisional
Probab=29.29  E-value=40  Score=14.44  Aligned_cols=23  Identities=13%  Similarity=0.134  Sum_probs=12.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             926999999999860464335882
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQKK   24 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~~   24 (294)
                      |||++.++++.+++.+|+ ++++.
T Consensus         1 MKk~l~l~~~~llLagC~-s~~~~   23 (140)
T PRK10449          1 MKKVVALVALSLLMAGCV-SSGKI   23 (140)
T ss_pred             CCHHHHHHHHHHHHHHCC-CCCCC
T ss_conf             903499999999997523-89988


No 218
>TIGR01826 CofD_related conserved hypothetical protein; InterPro: IPR010119   This entry represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (IPR010115 from INTERPRO), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis..
Probab=29.27  E-value=36  Score=14.73  Aligned_cols=60  Identities=17%  Similarity=0.244  Sum_probs=27.5

Q ss_pred             HHHH-HHHHHHHCCCCCEEE----EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCH
Q ss_conf             8999-999976201697189----98278997999999998299344432012378777886899
Q gi|254780537|r  219 PSMM-RHAINQMRSHKIKFI----FSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTY  278 (294)
Q Consensus       219 ~~~l-~~~~~~ik~~~v~~i----f~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y  278 (294)
                      ++-+ .++++.|++.+.-+|    |+-+-.++=.+..|+++....-....|+.+|.+..++++.|
T Consensus       177 ~~a~a~eAv~aI~eADlIilGPGSLyTSI~PnLLvp~i~~A~~~s~A~kvYV~NlmtqpGET~~~  241 (331)
T TIGR01826       177 VKALAREAVEAIREADLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLMTQPGETDGF  241 (331)
T ss_pred             CCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf             48751589999966692787772457774243216789999972899899973356688866477


No 219
>PRK05445 hypothetical protein; Validated
Probab=29.22  E-value=41  Score=14.34  Aligned_cols=48  Identities=21%  Similarity=0.285  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf             999999999864318889999998998630145533789988630784
Q gi|254780537|r  135 IYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDP  182 (294)
Q Consensus       135 ~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~  182 (294)
                      .+..+--+-|+.++|+|++.|+...+.+..-..-...++...+..+|.
T Consensus         9 LiL~NQy~il~~L~pen~~~Y~r~~~ile~Gy~l~~~el~~~f~~lse   56 (166)
T PRK05445          9 LILSNQYKMMTMLDPENAERYRRLQTIIERGYGLQMRELDREFGELSE   56 (166)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCH
T ss_conf             999989999986193016789999999981036799999999733888


No 220
>PHA00019 phage assembly protein
Probab=29.05  E-value=41  Score=14.32  Aligned_cols=42  Identities=14%  Similarity=0.113  Sum_probs=30.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHCC
Q ss_conf             926999999999860464335882899975289999998518
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAK   42 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~g   42 (294)
                      |+|.+.+++++|++.....+..++.+---.-++-++.+.++.
T Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~~isl~f~d~dIr~vl~~la~   42 (428)
T PHA00019          1 MIKSIFAKMLLFLLMFLSFSSFALPVELNNSPIREFVSWYSQ   42 (428)
T ss_pred             CHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf             927489999999987740567447788508779999999998


No 221
>PRK08507 prephenate dehydrogenase; Validated
Probab=28.93  E-value=41  Score=14.31  Aligned_cols=66  Identities=14%  Similarity=0.063  Sum_probs=42.9

Q ss_pred             EEEEECCC-----CHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             69982665-----2145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r  186 WFVTSEGC-----LVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV  251 (294)
Q Consensus       186 ~~v~~H~a-----f~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i  251 (294)
                      .||..||=     +|+-.-.-+|=.-...-+.|.....+..+..+.++.+.-|-+++...+....+.+..+
T Consensus       108 ~fVg~HPmAGsE~sG~~~a~~~LF~~~~~il~p~~~~~~~~~~~~~~l~~~lGa~~~~~~~~~HD~~~A~~  178 (275)
T PRK08507        108 NFIAAHPMTGTEFSGPKAAFKGLYKGAVVVLCDLEKSGEKHQERAKEIFSGIGMKIVFMDSKEHDHHAAYI  178 (275)
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHH
T ss_conf             84434997888754454410778539859996888897999999999999819978874823368999999


No 222
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.71  E-value=42  Score=14.28  Aligned_cols=64  Identities=19%  Similarity=0.298  Sum_probs=34.7

Q ss_pred             CCCCEEEEECH--------HHHHHHHHHCCCEEEEEEEECCCC----CCCC-----CCCCHHHHHHHCCCCEEEEECCCC
Q ss_conf             58828999752--------899999985189148999626889----8012-----022712457760378999988761
Q gi|254780537|r   21 TQKKVVLSSFS--------IIGDITQNIAKDLVTVTTLVEAGN----DSHS-----YQVTSADAIKIQNADLILCNGLHL   83 (294)
Q Consensus        21 ~~~~~Vv~s~~--------pl~~iv~~I~gd~v~V~~li~~g~----dpH~-----ye~tp~d~~~i~~Adliv~~G~~~   83 (294)
                      +++|.|++--.        -+..+++..+-.-  +++....|.    +|+.     ..-++.-...+++||+++..|..|
T Consensus       206 A~rPvii~G~g~~~~~a~~~l~~lae~lg~PV--~tt~~gkg~~p~~hp~~~G~~G~~~~~~a~~~l~~aDlvl~lG~rl  283 (574)
T PRK06882        206 AKKPVLFIGGGVITAECSEQLTQFAQRLNLPV--TSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRF  283 (574)
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCE--EEHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf             79988997874344248999999998609871--3120357777777765678777778889997433677399816865


Q ss_pred             CHH
Q ss_conf             068
Q gi|254780537|r   84 EET   86 (294)
Q Consensus        84 E~~   86 (294)
                      ..+
T Consensus       284 ~~~  286 (574)
T PRK06882        284 DDR  286 (574)
T ss_pred             CCC
T ss_conf             654


No 223
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=28.63  E-value=42  Score=14.27  Aligned_cols=30  Identities=17%  Similarity=0.121  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             643188899999989986301455337899
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLK  174 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~  174 (294)
                      .-+.|..+-......+++.-+++.-.+...
T Consensus       242 ~~lsP~~a~L~~RGL~TL~lRm~r~~~nA~  271 (398)
T PRK08249        242 ATLDPFAAYLILRGMKTLALRVRQQQENAM  271 (398)
T ss_pred             CCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             878917789986468979999999988999


No 224
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=28.45  E-value=42  Score=14.25  Aligned_cols=103  Identities=14%  Similarity=0.112  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---HHHCCCCCCCEEEE-----ECCCCH----HHHHHCCCE
Q ss_conf             999999986431888999999899863014553378998---86307844736998-----266521----457752972
Q gi|254780537|r  137 IENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKT---RIEKVDPEKRWFVT-----SEGCLV----YLAEDFGFK  204 (294)
Q Consensus       137 a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~---~~~~~p~~~~~~v~-----~H~af~----Y~~~~yGl~  204 (294)
                      ++-.+|-=..+-|-|+=.+.+-.+++--+++.-.+...+   -+..-|  +...|.     +|+.+.    |+-+.||- 
T Consensus       265 ~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~Hp--kV~~V~YpgL~~~~~h~la~kyl~~g~ga-  341 (426)
T COG2873         265 VQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHP--KVAWVNYPGLASHPYHALAKKYLPKGAGA-  341 (426)
T ss_pred             HHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCHHHHHHHCCCCCCE-
T ss_conf             988875165569378899983433667789998776999999986099--71034279988894357798636478643-


Q ss_pred             EEEECCCCCCCCCCHHHHHH---HHHHHCCCCCEEEEEECCC
Q ss_conf             88722688640007899999---9976201697189982789
Q gi|254780537|r  205 SLYLWPINSDSERSPSMMRH---AINQMRSHKIKFIFSESTN  243 (294)
Q Consensus       205 ~~~~~~~~~~~eps~~~l~~---~~~~ik~~~v~~if~e~~~  243 (294)
                       +-..++..+.|...+=+..   +.....=.+.+.+..-|-.
T Consensus       342 -vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAs  382 (426)
T COG2873         342 -VLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPAS  382 (426)
T ss_pred             -EEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf             -89987067189999999999999860354656427766774


No 225
>PRK06934 flavodoxin; Provisional
Probab=28.27  E-value=43  Score=14.23  Aligned_cols=28  Identities=11%  Similarity=0.095  Sum_probs=16.7

Q ss_pred             HHHHHCCCCEEEEECC--CCCHHHHHHHHH
Q ss_conf             4577603789999887--610689999974
Q gi|254780537|r   66 DAIKIQNADLILCNGL--HLEETYMKYFTN   93 (294)
Q Consensus        66 d~~~i~~Adliv~~G~--~~E~~~~~~~~~   93 (294)
                      .+..++.|.+++.+|.  |-...+.+.+++
T Consensus        53 ~vd~~s~as~~~~~~~~~GnT~~vAe~Iq~   82 (221)
T PRK06934         53 GVDGVSGASILQKNGEVLGSTQYVAQIIQE   82 (221)
T ss_pred             CCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             555557643787258668769999999999


No 226
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.23  E-value=43  Score=14.23  Aligned_cols=129  Identities=16%  Similarity=0.236  Sum_probs=54.7

Q ss_pred             CCCCEEEEECHH--------HHHHHHHHCCCEEEEEEEECCCCCCCCCC---------CCHHHHHHHCCCCEEEEECCCC
Q ss_conf             588289997528--------99999985189148999626889801202---------2712457760378999988761
Q gi|254780537|r   21 TQKKVVLSSFSI--------IGDITQNIAKDLVTVTTLVEAGNDSHSYQ---------VTSADAIKIQNADLILCNGLHL   83 (294)
Q Consensus        21 ~~~~~Vv~s~~p--------l~~iv~~I~gd~v~V~~li~~g~dpH~ye---------~tp~d~~~i~~Adliv~~G~~~   83 (294)
                      +++|.|++--..        +..|++..+-.-  ++++...|.=|++..         -++.--..+++||+++..|..|
T Consensus       204 akrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv--~tt~~gkg~~~~~hpl~~G~~G~~g~~~a~~~~~~aDlvl~lG~rl  281 (560)
T PRK08527        204 AKKPLFYLGGGAISSNASELIRELVKKTGIPA--VETLMALGTLRSDDPLNLGMAGMHGSYAANMALSECDLLISLGARF  281 (560)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCE--EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCC
T ss_conf             68986991776014469999999999859985--6444567777778842258777767699999983488699815767


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             06899999742355752111237420222100123346301112213567899999999986431888999999899
Q gi|254780537|r   84 EETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAR  160 (294)
Q Consensus        84 E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~  160 (294)
                      ..+.........++.+++.+.  +++.....    ....|-.+.-|   +...++.+.+.+.+.+|...+.+.+..+
T Consensus       282 ~~~~t~~~~~~~~~~~ii~id--~d~~~i~~----~~~~~~~i~~D---~~~~l~~L~~~l~~~~~~~~~~w~~~~~  349 (560)
T PRK08527        282 DDRVTGKLSEFAKHAKIIHVD--IDPSSISK----IINADYPIVGD---LKEVLKELLEELKKINPTTFKEWREILK  349 (560)
T ss_pred             CCCCCCCCCCCCCCCEEEEEC--CCHHHHCC----CCCCCCEEECC---HHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf             755568766346876046752--89899667----24788305348---9999999999753058533699999999


No 227
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=28.21  E-value=43  Score=14.22  Aligned_cols=20  Identities=20%  Similarity=0.190  Sum_probs=10.6

Q ss_pred             HHHHHHHHCCCEEEEEEEEC
Q ss_conf             99999985189148999626
Q gi|254780537|r   33 IGDITQNIAKDLVTVTTLVE   52 (294)
Q Consensus        33 l~~iv~~I~gd~v~V~~li~   52 (294)
                      +-++++.++.-..+|+.+..
T Consensus        13 ~r~LA~~La~rGHeV~Vit~   32 (396)
T cd03818          13 FRHLAPALAAQGHEVVFLTE   32 (396)
T ss_pred             HHHHHHHHHHCCCEEEEEEC
T ss_conf             99999999978998999968


No 228
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=28.07  E-value=43  Score=14.21  Aligned_cols=107  Identities=17%  Similarity=0.216  Sum_probs=54.2

Q ss_pred             HHHHHCCCCEEEEECCCCC---HHHHHHHHHC-CCCCCCCCCCCCCCH--HHH--HHC-----CCCCCCCCHHHHHHHHH
Q ss_conf             4577603789999887610---6899999742-355752111237420--222--100-----12334630111221356
Q gi|254780537|r   66 DAIKIQNADLILCNGLHLE---ETYMKYFTNL-KKGTKIITVTDGINP--IGV--SED-----TSVDSEPNPHAWMSLTN  132 (294)
Q Consensus        66 d~~~i~~Adliv~~G~~~E---~~~~~~~~~~-~~~~~~i~~~~~i~~--~~~--~~~-----~~~~~~~dpH~Wldp~~  132 (294)
                      ....+.+||+||..|.+--   |-+...+..+ +++.++|.+...-+.  ...  ...     .....-.|-|+=.-|-.
T Consensus       157 ~~~D~~~ad~i~~~G~Np~~~hP~~~~~l~~ak~~GakiIvidP~re~gl~rf~~p~~~~~~lt~~t~~Ad~~l~irpGt  236 (574)
T cd02767         157 SLEDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRIGG  236 (574)
T ss_pred             CHHHHHHCCEEEEECCCHHHHCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCCCHHCCCCCCHHHCEEECCCCCC
T ss_conf             98899758889997778678688999999999988896999889750566641575542000344305440440568895


Q ss_pred             HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf             789999999998643--------1888999999899863014553378
Q gi|254780537|r  133 AMIYIENIRKALTAL--------DPSNAKKYELNAREYSEKIRNSILP  172 (294)
Q Consensus       133 ~~~~a~~I~~~L~~~--------dP~~~~~y~~N~~~~~~~l~~l~~~  172 (294)
                      -...+..|...|++.        |.+--+.|...++.|.+.+.+..-+
T Consensus       237 D~Al~~gi~~~lie~d~~~~~~~D~~FI~~~t~Gfee~~~~v~~~~~e  284 (574)
T cd02767         237 DIALLNGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSWD  284 (574)
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCHH
T ss_conf             899999999999973654578668899987446799999998749999


No 229
>pfam00838 TCTP Translationally controlled tumour protein.
Probab=28.03  E-value=43  Score=14.20  Aligned_cols=38  Identities=13%  Similarity=0.274  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             35678999999999864318889999998998630145
Q gi|254780537|r  130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIR  167 (294)
Q Consensus       130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~  167 (294)
                      -...+.+...|.+.|.+..|+.-+.|.+|+..+.+++.
T Consensus        86 ~~yiK~YmK~v~~~L~e~~pe~V~~Fk~~a~~~vK~il  123 (166)
T pfam00838        86 KTYIKGYMKAVKAKLQEENPERVSLFKKNIQGWVKSLL  123 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999998765196789999998899999876


No 230
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=27.97  E-value=43  Score=14.20  Aligned_cols=34  Identities=21%  Similarity=0.199  Sum_probs=16.9

Q ss_pred             CHHHHHHHHHH---HHHCCCCCCCCCCEEEEE--CHHHH
Q ss_conf             92699999999---986046433588289997--52899
Q gi|254780537|r    1 MLRYFICLLFS---YIPMSASATTQKKVVLSS--FSIIG   34 (294)
Q Consensus         1 M~r~~~~l~~~---~~~~~~~~~~~~~~Vv~s--~~pl~   34 (294)
                      |||.+.++++.   +.++++++..++++|.++  .+|+.
T Consensus         1 mk~~~~~~~~~~~~~~~~~~~a~~~~l~Vg~~~~~pPf~   39 (247)
T PRK09495          1 MKSVLKVSLAALTLAFAVSSHAADKELVVATDTAFVPFE   39 (247)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEE
T ss_conf             977999999999999987665149949999899879805


No 231
>pfam06437 ISN1 IMP-specific 5'-nucleotidase. The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.
Probab=27.73  E-value=21  Score=16.36  Aligned_cols=78  Identities=15%  Similarity=0.215  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH-----CCCEEEEECC-CCCC-CCCCHHHHH
Q ss_conf             89999998998630145533789988630784473699826652145775-----2972887226-8864-000789999
Q gi|254780537|r  151 NAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAED-----FGFKSLYLWP-INSD-SERSPSMMR  223 (294)
Q Consensus       151 ~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~-----yGl~~~~~~~-~~~~-~eps~~~l~  223 (294)
                      -|+-|. ++.+|.++|..|...+.....--+..++.|++.-.--.|+.+.     +||+.+.-.. ..++ ...+-.++.
T Consensus       186 TAAGY~-~a~kY~~RL~GLLda~~~~~~L~~~qk~~l~VMGGEsNYLfr~~~~~~~~L~~Vp~~eW~~~~m~~W~~~di~  264 (404)
T pfam06437       186 TAAGYT-EADKYYERLHGLLDAINSSDDLTDEQKENLIVMGGESNYLFRYDEDSPHGLKPVPREEWLLPEMKTWNQEDIE  264 (404)
T ss_pred             ECCCCC-CHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEECCCCEEEEEECCCCCCCCEECCHHHCCCCCCCCCCHHHHH
T ss_conf             678999-7277999999999998605689979967469961562155676677777746667886558130276988999


Q ss_pred             HHHHHH
Q ss_conf             999762
Q gi|254780537|r  224 HAINQM  229 (294)
Q Consensus       224 ~~~~~i  229 (294)
                      ++.+..
T Consensus       265 ~lLD~A  270 (404)
T pfam06437       265 AILDIA  270 (404)
T ss_pred             HHHHHH
T ss_conf             999999


No 232
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=27.70  E-value=44  Score=14.16  Aligned_cols=94  Identities=17%  Similarity=0.222  Sum_probs=55.8

Q ss_pred             HHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC---------CCCEEEEEEC
Q ss_conf             7899886307844736998266521457752972887226886400078999999976201---------6971899827
Q gi|254780537|r  171 LPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS---------HKIKFIFSES  241 (294)
Q Consensus       171 ~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~---------~~v~~if~e~  241 (294)
                      ++....+..+..+.+.+|.|.|.|.               +..+..+|+.+..++...|++         .++++ .+-.
T Consensus       146 ~Ql~~~l~~l~~~~~~vIAYEPvWA---------------IGTG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~I-lYGG  209 (251)
T COG0149         146 RQLAAALAALSPEANIVIAYEPVWA---------------IGTGKSASPADAEEVHAFIRAVLAELFGAEEKVRI-LYGG  209 (251)
T ss_pred             HHHHHHHHHCCCCCCEEEEECCHHH---------------HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEEC
T ss_conf             9999998744854373999878888---------------45898889888999999999999974487787579-9717


Q ss_pred             CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             899799999999829934443201237877788689999999999
Q gi|254780537|r  242 TNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSL  286 (294)
Q Consensus       242 ~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~  286 (294)
                      ..++.-+..+..+.++.-. ++-.-+|     ..++|..+++...
T Consensus       210 SV~~~N~~e~~~~~~idG~-LVGgAsl-----ka~~f~~ii~~~~  248 (251)
T COG0149         210 SVKPGNAAELAAQPDIDGA-LVGGASL-----KADDFLAILEALA  248 (251)
T ss_pred             CCCHHHHHHHHCCCCCCEE-EECCEEE-----CCHHHHHHHHHHH
T ss_conf             7685579999658999868-9721330-----5255999999986


No 233
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=27.59  E-value=44  Score=14.15  Aligned_cols=50  Identities=4%  Similarity=-0.108  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             64318889999998998630145533789988630784473699826652
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL  194 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af  194 (294)
                      ....|..+-......+++.-+++.-.+.......-+....+.--+.||++
T Consensus       231 ~~~~p~~a~l~~rGL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL  280 (386)
T PRK08045        231 VTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSL  280 (386)
T ss_pred             CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf             77898899999836887788999999999999999863998537989999


No 234
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274   Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC).   Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain.   Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains .    This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=27.57  E-value=44  Score=14.15  Aligned_cols=49  Identities=12%  Similarity=0.137  Sum_probs=28.6

Q ss_pred             EEEEEEEECCC--CCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf             14899962688--980120227124577603789999887610689999974
Q gi|254780537|r   44 LVTVTTLVEAG--NDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTN   93 (294)
Q Consensus        44 ~v~V~~li~~g--~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~   93 (294)
                      ++.|..+|=..  ..+.+|+.+-|=-.=|++-+++=.-|.+ .-.+.+.+.+
T Consensus        80 ~i~v~G~vv~e~~~~~Snwra~~SL~~~L~~~~ipgI~GvD-TRaLv~~iR~  130 (383)
T TIGR01368        80 KIHVKGLVVRELSDRYSNWRATESLDQFLKEHGIPGIYGVD-TRALVKKIRE  130 (383)
T ss_pred             EEEEEEEEEECCCCCCCHHHHHCCHHHHHHHCCCEEEECCC-HHHHHHHHHH
T ss_conf             34899998541236787155650489999856984730457-7999999863


No 235
>pfam03652 UPF0081 Uncharacterized protein family (UPF0081).
Probab=27.54  E-value=44  Score=14.15  Aligned_cols=46  Identities=9%  Similarity=0.152  Sum_probs=33.9

Q ss_pred             CCCCCCHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             64000789999999762016-97189982789979999999982993
Q gi|254780537|r  213 SDSERSPSMMRHAINQMRSH-KIKFIFSESTNSDQPAKQVAYETNAS  258 (294)
Q Consensus       213 ~~~eps~~~l~~~~~~ik~~-~v~~if~e~~~~~~~~~~ia~e~~~~  258 (294)
                      ....+..+.+..+.+.+++. ++++.|.++-.+++.++..-++.|.+
T Consensus        65 G~~~~~~~~v~~f~~~L~~~~~i~v~~~DEr~TS~~A~~~l~~~~~~  111 (134)
T pfam03652        65 GSEGEQTKRVRKFARRLKKRFGLPVELVDERLTTVEAERILREAGLS  111 (134)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf             88088999999999999986199868863432799999999973744


No 236
>PRK06767 methionine gamma-lyase; Provisional
Probab=27.53  E-value=44  Score=14.14  Aligned_cols=57  Identities=4%  Similarity=-0.144  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHC
Q ss_conf             643188899999989986301455337899886307844736998266521457752
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDF  201 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~y  201 (294)
                      ..+.|..+-......+++.-+++.-.+.......-+....+.--++||.+....+.+
T Consensus       240 ~~~sp~~a~l~~rGl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yP~~~la~k~~  296 (386)
T PRK06767        240 GIMAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQM  296 (386)
T ss_pred             CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHH
T ss_conf             878934778986267878999999999999999999639983758796888998872


No 237
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=27.50  E-value=44  Score=14.14  Aligned_cols=69  Identities=16%  Similarity=0.170  Sum_probs=43.9

Q ss_pred             EEECCCCHHHH---------HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             98266521457---------752972887226886400078999999976201697189982789979999999982993
Q gi|254780537|r  188 VTSEGCLVYLA---------EDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNAS  258 (294)
Q Consensus       188 v~~H~af~Y~~---------~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~  258 (294)
                      +|+|-||+...         -++|++-+-..|-.+..+-....|+++.+.  .++ +.|..-...++.-++.+. ++|++
T Consensus       118 vTFHRAfD~~~dp~~ale~Li~lG~~rILTSG~~~~A~~G~~~L~~L~~~--a~~-~iIm~GgGV~~~Ni~~~~-~tG~~  193 (248)
T PRK11572        118 VTFHRAFDMCANPLNALKNLAELGVARILTSGQQSDAEQGLSLIMELIAQ--GDA-PIIMAGAGVRAENLQKFL-DAGVR  193 (248)
T ss_pred             EEEECHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH--CCC-CEEEECCCCCHHHHHHHH-HCCCC
T ss_conf             79862022149999999999975999898899978777889999999984--499-689878998999999999-75977


Q ss_pred             EE
Q ss_conf             44
Q gi|254780537|r  259 YG  260 (294)
Q Consensus       259 ~~  260 (294)
                      -.
T Consensus       194 ei  195 (248)
T PRK11572        194 EV  195 (248)
T ss_pred             EE
T ss_conf             89


No 238
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308   These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=27.31  E-value=43  Score=14.17  Aligned_cols=73  Identities=8%  Similarity=0.150  Sum_probs=49.7

Q ss_pred             CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCC-CCCCCCCCHHHHHHHCCCCEEE-EECCCCC-HHHHHHHHHC
Q ss_conf             8828999752899999985189148999626889-8012022712457760378999-9887610-6899999742
Q gi|254780537|r   22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGN-DSHSYQVTSADAIKIQNADLIL-CNGLHLE-ETYMKYFTNL   94 (294)
Q Consensus        22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~-dpH~ye~tp~d~~~i~~Adliv-~~G~~~E-~~~~~~~~~~   94 (294)
                      ++..|+-.+.-+-..-++|-...+++|.|..--. +.-+-|--=..++.+=+..++| .||+.|| +|+...+.+.
T Consensus       233 nGk~ii~~~~~FikP~~~l~~~~~elT~ITq~ml~n~~~~~~vL~k~~~f~~d~ilVAHNGasFD~~Fl~~~~~k~  308 (1264)
T TIGR01405       233 NGKRIIDKFQFFIKPKEPLSAFVTELTGITQDMLENAPEIEEVLEKFKEFLKDSILVAHNGASFDIGFLNTNFEKV  308 (1264)
T ss_pred             CCCEEEEEHHHHCCCCCCCCCCEEEECCCCHHHHCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHC
T ss_conf             6857623123232887546754266246647973798417899999999769758886276103668898898762


No 239
>pfam07225 NDUF_B4 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4). This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).
Probab=27.23  E-value=30  Score=15.27  Aligned_cols=21  Identities=10%  Similarity=0.123  Sum_probs=16.5

Q ss_pred             ECCCCCCCCCCCCHHHHHHHC
Q ss_conf             268898012022712457760
Q gi|254780537|r   51 VEAGNDSHSYQVTSADAIKIQ   71 (294)
Q Consensus        51 i~~g~dpH~ye~tp~d~~~i~   71 (294)
                      .|...|||+|..||.+.++..
T Consensus        10 ~p~~Ldp~eYdvSpE~rra~~   30 (125)
T pfam07225        10 LPETLDPAEYNLSPETRRAEA   30 (125)
T ss_pred             CCCCCCHHHCCCCHHHHHHHH
T ss_conf             888789312179989999999


No 240
>PRK09934 putative fimbrial protein; Provisional
Probab=26.98  E-value=42  Score=14.25  Aligned_cols=18  Identities=28%  Similarity=0.360  Sum_probs=11.8

Q ss_pred             CHHHHHHHHHHHHHCCCC
Q ss_conf             926999999999860464
Q gi|254780537|r    1 MLRYFICLLFSYIPMSAS   18 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~   18 (294)
                      |||.|+.+++++++++.+
T Consensus         1 mkk~~l~~~~~l~~~~~~   18 (171)
T PRK09934          1 MRRVFIAIFCGLLWSPLS   18 (171)
T ss_pred             CHHHHHHHHHHHHHHHHH
T ss_conf             926899999999986344


No 241
>TIGR02747 TraV type IV conjugative transfer system protein TraV; InterPro: IPR014118   This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK , , . The alignment contains three conserved cysteines in the N-terminal half..
Probab=26.95  E-value=39  Score=14.49  Aligned_cols=18  Identities=22%  Similarity=0.538  Sum_probs=8.9

Q ss_pred             CHHHHHHHHHHHHH--CCCC
Q ss_conf             92699999999986--0464
Q gi|254780537|r    1 MLRYFICLLFSYIP--MSAS   18 (294)
Q Consensus         1 M~r~~~~l~~~~~~--~~~~   18 (294)
                      |||...++++.+++  +++|
T Consensus         1 Mmr~~~L~~~~~~~f~LtGC   20 (174)
T TIGR02747         1 MMRLKVLLLLACVAFLLTGC   20 (174)
T ss_pred             CCHHHHHHHHHHHHHHHHHH
T ss_conf             90678999999998720025


No 242
>PRK12999 pyruvate carboxylase; Reviewed
Probab=26.90  E-value=31  Score=15.13  Aligned_cols=30  Identities=10%  Similarity=0.154  Sum_probs=12.8

Q ss_pred             CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             29728872268864000789999999762016
Q gi|254780537|r  201 FGFKSLYLWPINSDSERSPSMMRHAINQMRSH  232 (294)
Q Consensus       201 yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~  232 (294)
                      .|-..+++-.+.  .-.+|....+++..+|+.
T Consensus       704 ~G~~~l~IKDMA--GLl~P~aa~~LV~aLk~~  733 (1147)
T PRK12999        704 AGAHILAIKDMA--GLLKPAAAYKLVSALKEE  733 (1147)
T ss_pred             CCCCEEEECCCC--CCCCHHHHHHHHHHHHHH
T ss_conf             689889971445--468879999999999861


No 243
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=26.76  E-value=45  Score=14.05  Aligned_cols=23  Identities=9%  Similarity=0.193  Sum_probs=8.4

Q ss_pred             HHHHHHHHHCC--CCCCCCCCCCCC
Q ss_conf             68999997423--557521112374
Q gi|254780537|r   85 ETYMKYFTNLK--KGTKIITVTDGI  107 (294)
Q Consensus        85 ~~~~~~~~~~~--~~~~~i~~~~~i  107 (294)
                      +++.++++..+  ++..-++++.|+
T Consensus        29 ~fis~ii~~~~l~~~dvF~DLGSGV   53 (205)
T pfam08123        29 EFLSDVLDKCNLGPQDVFVDLGSGV   53 (205)
T ss_pred             HHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf             9999999983989768899858883


No 244
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal.  L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit.  The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=26.71  E-value=34  Score=14.88  Aligned_cols=19  Identities=16%  Similarity=0.309  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             1122135678999999999
Q gi|254780537|r  125 HAWMSLTNAMIYIENIRKA  143 (294)
Q Consensus       125 H~Wldp~~~~~~a~~I~~~  143 (294)
                      -+|+||+....++++|...
T Consensus        18 RVw~DP~~~~eI~~A~tR~   36 (145)
T cd01418          18 RVWIDPERLEEVAEAITRD   36 (145)
T ss_pred             CEEECCHHHHHHHHHHHHH
T ss_conf             0573806777999865199


No 245
>pfam07437 YfaZ YfaZ precursor. This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=26.57  E-value=38  Score=14.57  Aligned_cols=42  Identities=7%  Similarity=0.109  Sum_probs=25.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf             926999999999860464335882899975289999998518914899962688
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAG   54 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g   54 (294)
                      |||+++.+.+++++.+.++.+....+            +++.+.++...=++.+
T Consensus         1 mkk~~~~~a~~l~~~s~~A~A~s~~~------------~~g~~~t~~~~~~g~~   42 (180)
T pfam07437         1 MAKFRVASVALLLLVALSVNASSFNL------------GLGNDYTNTGLGLGTN   42 (180)
T ss_pred             CCHHHHHHHHHHHHHHHHCEEEEEEC------------CCCCCEEEEEECCCCC
T ss_conf             90358999999987632105788422------------4664137774303788


No 246
>PRK05968 hypothetical protein; Provisional
Probab=26.44  E-value=46  Score=14.02  Aligned_cols=30  Identities=13%  Similarity=0.030  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             643188899999989986301455337899
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLK  174 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~  174 (294)
                      .-+.|.++-......+++.-+++.-.+...
T Consensus       241 ~~lsP~~a~l~lRGL~TL~lRm~rh~~nA~  270 (389)
T PRK05968        241 GKLSPFEAWLLLRGLRTLPLRMKAHEASAL  270 (389)
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             778858889998479869999999999999


No 247
>pfam10933 DUF2827 Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.
Probab=26.38  E-value=46  Score=14.01  Aligned_cols=68  Identities=13%  Similarity=0.232  Sum_probs=36.8

Q ss_pred             CHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH------H--CCC-CCCCCCHHHHHHHHHH
Q ss_conf             712457760378999988761068999997423557521112374202221------0--012-3346301112213567
Q gi|254780537|r   63 TSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVS------E--DTS-VDSEPNPHAWMSLTNA  133 (294)
Q Consensus        63 tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~------~--~~~-~~~~~dpH~Wldp~~~  133 (294)
                      +++|+  ..+-|++|-.|+.+|+-+.+.+...  +.+++...-|-+-...-      .  ++. ....+| -+|++|...
T Consensus        66 ~~~ea--~~~lDVlIEmg~~i~~~~~~~~r~~--G~KvV~~~~Gn~Yv~~iE~~iF~~~~~~~~~~~~~D-eIW~~Pq~~  140 (364)
T pfam10933        66 SFAEV--KDALDVLIEMGAQIDVEWTAYLKAR--GGKIVSYCCGNDYVIAIERMMFGRPSGHLFIGTPYD-EVWTIPQFE  140 (364)
T ss_pred             CHHHH--HHCCCEEEEECCCCCHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCC-EEEECCCHH
T ss_conf             59998--3378999991675487999999975--992899966856787634765079887656799865-178450045


Q ss_pred             HH
Q ss_conf             89
Q gi|254780537|r  134 MI  135 (294)
Q Consensus       134 ~~  135 (294)
                      ..
T Consensus       141 ~~  142 (364)
T pfam10933       141 RT  142 (364)
T ss_pred             HH
T ss_conf             33


No 248
>pfam01497 Peripla_BP_2 Periplasmic binding protein. This family includes bacterial periplasmic binding proteins. Several of which are involved in iron transport.
Probab=26.38  E-value=46  Score=14.01  Aligned_cols=110  Identities=13%  Similarity=0.118  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEE----------ECCCC-HH
Q ss_conf             21356789999999998643188899999989986301455337899886307844736998----------26652-14
Q gi|254780537|r  128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVT----------SEGCL-VY  196 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~----------~H~af-~Y  196 (294)
                      -++.........+++.+-+.  +.++       ++.+.+++....++++....+.+.+.++.          ...+| +.
T Consensus        93 ~~~~~~~~~i~~lg~~~g~~--~~a~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  163 (236)
T pfam01497        93 STGEGILEQIRALGELLGLE--DEAE-------ELVAELDSAIDAAKARIDSLKPKPVLVFGYADGGGYVVFGSGSYIGD  163 (236)
T ss_pred             CCHHHHHHHHHHHHHHHCCC--HHHH-------HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCHHH
T ss_conf             99899999999999996981--7899-------99999999999999874046898399999988996388358865689


Q ss_pred             HHHHCCCEEEEECC-CCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf             57752972887226-8864000789999999762016971899827899799999999
Q gi|254780537|r  197 LAEDFGFKSLYLWP-INSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAY  253 (294)
Q Consensus       197 ~~~~yGl~~~~~~~-~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~  253 (294)
                      +.+..|++...-.. .....+.|+..+.       +.+..+||.-....+...+.|.+
T Consensus       164 ~i~~~G~~n~~~~~~~~~~~~vs~E~i~-------~~nPD~I~~~~~~~~~~~~~l~~  214 (236)
T pfam01497       164 LLDALGGENIAAETKGSESAPISFENIL-------AADPDVIIVSGRETKTGVDELKA  214 (236)
T ss_pred             HHHHCCCCCCCCCCCCCCCCCCCHHHHH-------HHCCCEEEEECCCCHHHHHHHHH
T ss_conf             9998299655444577888878989999-------85999999978985578999883


No 249
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=26.33  E-value=46  Score=14.00  Aligned_cols=81  Identities=9%  Similarity=0.097  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCC------CHHHHHHC-CCEEEEECCCCCCCCC
Q ss_conf             6431888999999899863014553378998863078447369982665------21457752-9728872268864000
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGC------LVYLAEDF-GFKSLYLWPINSDSER  217 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~a------f~Y~~~~y-Gl~~~~~~~~~~~~ep  217 (294)
                      .-++|..+=....+.+++.-+++...+...+...-+......--++||+      ...+.+.+ |..-+--..+..+   
T Consensus       244 ~~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~krq~~g~gg~~Sf~l~~~---  320 (396)
T COG0626         244 AVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE---  320 (396)
T ss_pred             CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEECCH---
T ss_conf             87887999999817153999999999989999999862997689989999889768999974579860899996785---


Q ss_pred             CHHHHHHHHHHHC
Q ss_conf             7899999997620
Q gi|254780537|r  218 SPSMMRHAINQMR  230 (294)
Q Consensus       218 s~~~l~~~~~~ik  230 (294)
                        .+..++.+.++
T Consensus       321 --~~~~~f~~~L~  331 (396)
T COG0626         321 --EAAKKFLDSLK  331 (396)
T ss_pred             --HHHHHHHHHCC
T ss_conf             --89999997278


No 250
>PRK08655 prephenate dehydrogenase; Provisional
Probab=26.17  E-value=46  Score=13.99  Aligned_cols=37  Identities=11%  Similarity=0.074  Sum_probs=22.2

Q ss_pred             CCCCHHHHHHHHH---HHCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf             0007899999997---6201697189982789979999999
Q gi|254780537|r  215 SERSPSMMRHAIN---QMRSHKIKFIFSESTNSDQPAKQVA  252 (294)
Q Consensus       215 ~eps~~~l~~~~~---~ik~~~v~~if~e~~~~~~~~~~ia  252 (294)
                      .-.|.+++.+...   ..+..+|.++|-.. .++..+..+-
T Consensus       343 ~~~~~~el~~wk~~nl~~~~~disv~~~~~-~d~~ii~~~~  382 (441)
T PRK08655        343 RLLSEKELREWKVENLEKYVRDISVLFPKG-ADPEVILELL  382 (441)
T ss_pred             CCCCHHHHHHHHHCCCCCCEEEEEEEECCC-CCHHHHHHHH
T ss_conf             038988999988645763135689992699-9979999998


No 251
>PRK04043 tolB translocation protein TolB; Provisional
Probab=26.11  E-value=46  Score=13.98  Aligned_cols=76  Identities=14%  Similarity=0.163  Sum_probs=36.3

Q ss_pred             CHHHHHHHHHHHHHCCCC-------CCCCCCEEEEECHHH-------HHHHHHHCCCEEEEEE---EECCCCCCCCCCCC
Q ss_conf             926999999999860464-------335882899975289-------9999985189148999---62688980120227
Q gi|254780537|r    1 MLRYFICLLFSYIPMSAS-------ATTQKKVVLSSFSII-------GDITQNIAKDLVTVTT---LVEAGNDSHSYQVT   63 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~-------~~~~~~~Vv~s~~pl-------~~iv~~I~gd~v~V~~---li~~g~dpH~ye~t   63 (294)
                      |||+++++++++.++.+.       .....+.|.+..+..       .+|.+-|..|- ....   +++ ....-.+++.
T Consensus         1 MKki~l~ll~~~~~~aae~~IeIt~~~~~~~~IAVvp~~~~~~~~l~~~i~~II~~DL-~rSG~F~~i~-~~~~~~~~~~   78 (419)
T PRK04043          1 MKKLVLFLLVSLGLFAVDATLDIVKKGQKLPKIVVEDSSDSNDANLKLKFFKILVNDL-KVSSHFDVSE-NKTQSNYAIN   78 (419)
T ss_pred             CHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCC-CCCCCCCCCC
T ss_conf             9557788999977745047999994787876589961686776413689999998753-4165851278-7666667768


Q ss_pred             HHHHHHHCCCCEEEEE
Q ss_conf             1245776037899998
Q gi|254780537|r   64 SADAIKIQNADLILCN   79 (294)
Q Consensus        64 p~d~~~i~~Adliv~~   79 (294)
                      ..+-+.+ ++|.+|.-
T Consensus        79 ~~~w~~~-~~d~lv~g   93 (419)
T PRK04043         79 YNELKDK-KVNLVARY   93 (419)
T ss_pred             HHHHHHH-CCCEEEEE
T ss_conf             5687750-99799999


No 252
>pfam00875 DNA_photolyase DNA photolyase. This domain binds a light harvesting cofactor.
Probab=26.02  E-value=47  Score=13.97  Aligned_cols=18  Identities=11%  Similarity=-0.042  Sum_probs=7.9

Q ss_pred             HHHHHHHHCCCCCEEEEE
Q ss_conf             999997620169718998
Q gi|254780537|r  222 MRHAINQMRSHKIKFIFS  239 (294)
Q Consensus       222 l~~~~~~ik~~~v~~if~  239 (294)
                      -.++.+.++++||.+..+
T Consensus       106 d~~v~~~l~~~~i~~~~~  123 (164)
T pfam00875       106 DAAVKEALREAGIEVHSF  123 (164)
T ss_pred             HHHHHHHHHHCCCEEEEE
T ss_conf             999999998547469997


No 253
>PRK07671 cystathionine beta-lyase; Provisional
Probab=25.92  E-value=47  Score=13.95  Aligned_cols=55  Identities=7%  Similarity=0.010  Sum_probs=28.7

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             99998-64318889999998998630145533789988630784473699826652
Q gi|254780537|r  140 IRKAL-TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL  194 (294)
Q Consensus       140 I~~~L-~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af  194 (294)
                      +...+ .-+.|.++-......+++.-+++.-.+.......-+....+.--++||.+
T Consensus       222 ~~~~~G~~lsP~~a~L~lRGL~TL~lRm~r~~~nA~~vA~~L~~hp~V~~V~yPgL  277 (377)
T PRK07671        222 VQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVNKVYYPGL  277 (377)
T ss_pred             HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf             99863577884777898706886999999999999999999861998449967688


No 254
>KOG2847 consensus
Probab=25.88  E-value=41  Score=14.31  Aligned_cols=57  Identities=25%  Similarity=0.352  Sum_probs=31.8

Q ss_pred             CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf             1068999997423557521112374202221001233463011122135678-9999999998643188
Q gi|254780537|r   83 LEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAM-IYIENIRKALTALDPS  150 (294)
Q Consensus        83 ~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~-~~a~~I~~~L~~~dP~  150 (294)
                      .+..+.+++.+-.++...|++|.+..           .-+||++|=....-. --.+.|+=.|...|=.
T Consensus        54 n~e~l~~l~~~Rp~n~PLiTVSNH~S-----------~vDDP~~W~~L~~~~f~~~~~~RWtlaAhdIC  111 (286)
T KOG2847          54 NRETLTALLESRPPNRPLITVSNHMS-----------CVDDPLVWGILKLRLFLNLKNIRWTLAAHDIC  111 (286)
T ss_pred             CHHHHHHHHHCCCCCCCEEEEECCHH-----------CCCCCEEEEEECHHHHCCHHHHHEEHHHHHCH
T ss_conf             39999999972899997289834200-----------26786057870305434555421101210012


No 255
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.87  E-value=47  Score=13.95  Aligned_cols=29  Identities=10%  Similarity=0.069  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             43188899999989986301455337899
Q gi|254780537|r  146 ALDPSNAKKYELNAREYSEKIRNSILPLK  174 (294)
Q Consensus       146 ~~dP~~~~~y~~N~~~~~~~l~~l~~~~~  174 (294)
                      -+.|-++-....-.+++.-+++.-.+...
T Consensus       273 ~lsP~~a~L~lrGL~TL~lRm~r~~~nA~  301 (432)
T PRK06702        273 CMSPFNAYISNIGLETLHLRMERHSENAL  301 (432)
T ss_pred             CCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             67822568987278979999999999999


No 256
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=25.76  E-value=47  Score=13.94  Aligned_cols=50  Identities=8%  Similarity=-0.070  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf             64318889999998998630145533789988630784473699826652
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL  194 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af  194 (294)
                      ..++|..+-......+++.-+++.-.+.......-+....+.--++||..
T Consensus       230 ~~~~p~~a~l~~rGl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPG~  279 (366)
T PRK08247        230 AVLSPFDSWLLIRGMKTLALRMRQHEENAKALAAFLNEQPGVTDVLYPGK  279 (366)
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf             67793777788635250999999999999999999861997048956998


No 257
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670   This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=25.41  E-value=47  Score=13.94  Aligned_cols=135  Identities=13%  Similarity=0.135  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC----C-CCEEEEECCCCHHHHHHCCCEEEEE
Q ss_conf             8999999999864318889999998998630145533789988630784----4-7369982665214577529728872
Q gi|254780537|r  134 MIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDP----E-KRWFVTSEGCLVYLAEDFGFKSLYL  208 (294)
Q Consensus       134 ~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~----~-~~~~v~~H~af~Y~~~~yGl~~~~~  208 (294)
                      +.+=++|+=.+--.-=.++...++-.++-+++- .|=.+.++++.+-+.    + +-.+        =.||..-++---+
T Consensus        96 mSIydNiayG~r~~G~~~K~~L~e~Ve~sL~~A-ALWDEVKD~L~~sa~~LSGGQQQRL--------CIARalA~ePeVl  166 (248)
T TIGR00972        96 MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKA-ALWDEVKDRLHDSALGLSGGQQQRL--------CIARALAVEPEVL  166 (248)
T ss_pred             CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHHCCCCCCCCCHHHHHH--------HHHHHHHCCCCEE
T ss_conf             405567545245216337789999999998616-8713552421358897872688999--------9998752488521


Q ss_pred             C--CCCCCCCC-CHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH----CCCEEEEEECCCCC--CCCCCCCCHH
Q ss_conf             2--68864000-78999999976201697189982789979999999982----99344432012378--7778868999
Q gi|254780537|r  209 W--PINSDSER-SPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYET----NASYGGVLYVDSLS--KPDGPAPTYL  279 (294)
Q Consensus       209 ~--~~~~~~ep-s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~----~~~~~~~~~~d~l~--~~~~~~~~Y~  279 (294)
                      .  ++.+.=+| +...|.+++..+|++ -.+|.+  .+|=..|..|+..|    ...+++.=.++.+-  ++...+.+|+
T Consensus       167 LlDEPTSALDPIaT~~IEeLi~eLk~~-YTivIV--THnMqQA~RiSD~tAFF~~G~LvE~G~T~~iF~~Pk~~~T~dYi  243 (248)
T TIGR00972       167 LLDEPTSALDPIATGKIEELIQELKKK-YTIVIV--THNMQQAARISDRTAFFYDGELVEYGDTEQIFTNPKEKRTEDYI  243 (248)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHC-CEEEEE--ECCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCHHCC
T ss_conf             057888757877899999999987652-979988--17756789999999886567257407813876215652000101


Q ss_pred             H
Q ss_conf             9
Q gi|254780537|r  280 D  280 (294)
Q Consensus       280 ~  280 (294)
                      +
T Consensus       244 s  244 (248)
T TIGR00972       244 S  244 (248)
T ss_pred             C
T ss_conf             4


No 258
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=25.37  E-value=48  Score=13.89  Aligned_cols=134  Identities=14%  Similarity=0.104  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCC-CCCE-------EEEEC
Q ss_conf             21356789999999998-------643188899999989986301-45533789988630784-4736-------99826
Q gi|254780537|r  128 MSLTNAMIYIENIRKAL-------TALDPSNAKKYELNAREYSEK-IRNSILPLKTRIEKVDP-EKRW-------FVTSE  191 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L-------~~~dP~~~~~y~~N~~~~~~~-l~~l~~~~~~~~~~~p~-~~~~-------~v~~H  191 (294)
                      .|..|.+.. ..|+++.       +...-+|+-.+++|-..|..+ +.++.+++-.-...+-. .++.       ++...
T Consensus       170 VSm~Nir~v-~~la~~~giplvlDaaRfaENAyFIk~rE~gy~d~si~eI~rEmfs~aDg~tmSaKKD~~vniGG~ia~~  248 (431)
T cd00617         170 VSMANLREV-RELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALR  248 (431)
T ss_pred             CCHHHHHHH-HHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEC
T ss_conf             678999999-9999980997998766788768999843530247999999999985402789970314532455678857


Q ss_pred             C-CCHHHHHH-----CCCEEE-E---------ECCCCCCCC-----CCHHHHHHHHHHHCCCCCEEE--------EEEC-
Q ss_conf             6-52145775-----297288-7---------226886400-----078999999976201697189--------9827-
Q gi|254780537|r  192 G-CLVYLAED-----FGFKSL-Y---------LWPINSDSE-----RSPSMMRHAINQMRSHKIKFI--------FSES-  241 (294)
Q Consensus       192 ~-af~Y~~~~-----yGl~~~-~---------~~~~~~~~e-----ps~~~l~~~~~~ik~~~v~~i--------f~e~-  241 (294)
                      + .+---++.     -|+... +         ..|+.+..+     -...+++-+.+.+++.+|+++        |.+. 
T Consensus       249 D~~l~~~~~~~~i~~EGf~TYGGlaGRD~eAlA~GL~E~~d~~yl~~Ri~qv~yL~~~L~~~GvPvv~P~GGHav~iDA~  328 (431)
T cd00617         249 DDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRLDEAGVPIVEPAGGHAVFIDAR  328 (431)
T ss_pred             CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEHH
T ss_conf             79999999754320058744356325349998654075436799997799999999999988996666897438997467


Q ss_pred             ---------CCC-HHHHHHHHHHHCCCEEEE
Q ss_conf             ---------899-799999999829934443
Q gi|254780537|r  242 ---------TNS-DQPAKQVAYETNASYGGV  262 (294)
Q Consensus       242 ---------~~~-~~~~~~ia~e~~~~~~~~  262 (294)
                               +++ ...+..|=.+.|++..++
T Consensus       329 ~flPhip~~~fPa~aLa~~LY~~~GIR~~E~  359 (431)
T cd00617         329 EFLPHIPQEQFPAQALAAELYLEAGVRAVEL  359 (431)
T ss_pred             HHCCCCCHHHCCHHHHHHHHHHHCCCCEEEE
T ss_conf             7468998143918999999999709456854


No 259
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=25.34  E-value=39  Score=14.52  Aligned_cols=19  Identities=16%  Similarity=0.303  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             1122135678999999999
Q gi|254780537|r  125 HAWMSLTNAMIYIENIRKA  143 (294)
Q Consensus       125 H~Wldp~~~~~~a~~I~~~  143 (294)
                      -+|+||+....++++|...
T Consensus        21 RVw~DP~~~~eI~~AitR~   39 (150)
T PRK08570         21 RVWIDPEALEEVAEAITRE   39 (150)
T ss_pred             CEEECHHHHHHHHHHHHHH
T ss_conf             2675827788999865299


No 260
>pfam07901 DUF1672 Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.
Probab=25.31  E-value=48  Score=13.88  Aligned_cols=19  Identities=16%  Similarity=0.289  Sum_probs=11.8

Q ss_pred             CHHHHHHHHHHHHHCCCCC
Q ss_conf             9269999999998604643
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASA   19 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~   19 (294)
                      |+|++++++.+.+++++|.
T Consensus         1 MkK~i~~il~~~llL~GCs   19 (304)
T pfam07901         1 MRKLIKLILIATLLLSGCS   19 (304)
T ss_pred             CCHHHHHHHHHHHHHCCCC
T ss_conf             9018999999999971334


No 261
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=25.28  E-value=48  Score=13.88  Aligned_cols=92  Identities=11%  Similarity=0.129  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCCEEEEECCCC-----HH-HHHHCCCEEEEECCCCCC------CCCCHHHHHHHHHHHCCCC
Q ss_conf             45533789988630784473699826652-----14-577529728872268864------0007899999997620169
Q gi|254780537|r  166 IRNSILPLKTRIEKVDPEKRWFVTSEGCL-----VY-LAEDFGFKSLYLWPINSD------SERSPSMMRHAINQMRSHK  233 (294)
Q Consensus       166 l~~l~~~~~~~~~~~p~~~~~~v~~H~af-----~Y-~~~~yGl~~~~~~~~~~~------~eps~~~l~~~~~~ik~~~  233 (294)
                      ++.|...+...+..- .....+++.-...     .| |.++.|++.+++...+++      .+....++.++.+.+++++
T Consensus        68 V~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~d  146 (211)
T COG2344          68 VKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKND  146 (211)
T ss_pred             HHHHHHHHHHHHCCC-CCEEEEEECCCHHHHHHHCCCCHHHCCCEEEEEECCCHHHHCCCCCCEEEECHHHHHHHHHHCC
T ss_conf             999999999983877-4034899905708889860742332693599996178788375248814552688888988617


Q ss_pred             CEEEEEECCCCHHHHHHHHH---HHCCCEE
Q ss_conf             71899827899799999999---8299344
Q gi|254780537|r  234 IKFIFSESTNSDQPAKQVAY---ETNASYG  260 (294)
Q Consensus       234 v~~if~e~~~~~~~~~~ia~---e~~~~~~  260 (294)
                      |.+-..  ..+...++.+++   +.|++.+
T Consensus       147 v~iaiL--tVPa~~AQ~vad~Lv~aGVkGI  174 (211)
T COG2344         147 VEIAIL--TVPAEHAQEVADRLVKAGVKGI  174 (211)
T ss_pred             CCEEEE--ECCHHHHHHHHHHHHHCCCCEE
T ss_conf             618999--7348989999999998387358


No 262
>cd00481 Ribosomal_L19e Ribosomal protein L19e.  L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit.  The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=25.23  E-value=46  Score=14.02  Aligned_cols=19  Identities=5%  Similarity=0.176  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             1122135678999999999
Q gi|254780537|r  125 HAWMSLTNAMIYIENIRKA  143 (294)
Q Consensus       125 H~Wldp~~~~~~a~~I~~~  143 (294)
                      -+|+||+....++++|...
T Consensus        18 rVw~DP~~~~eI~~A~tR~   36 (145)
T cd00481          18 RVWIDPNELEEIANANTRE   36 (145)
T ss_pred             EEECCCHHHHHHHHHHHHH
T ss_conf             0560815777999865199


No 263
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=25.16  E-value=48  Score=13.86  Aligned_cols=115  Identities=17%  Similarity=0.118  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEE
Q ss_conf             356789999999998643188899999989986301-4553378998863078447369982665214577529728872
Q gi|254780537|r  130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEK-IRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYL  208 (294)
Q Consensus       130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~-l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~  208 (294)
                      |+.+......+ +.+..+.++..+.+....+.|.++ +.-|.-.++    ..+... ..-   ..   -..+-++...|+
T Consensus       474 pe~il~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~glRvla~A~k----~~~~~~-~~~---~~---~~~E~dl~~lGl  541 (917)
T COG0474         474 PEVILERCKSI-GELEPLTEEGLRTLEEAVKELASEGLRVLAVAYK----KLDRAE-KDD---EV---DEIESDLVFLGL  541 (917)
T ss_pred             HHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCC-CCC---CH---HHHHCCCEEEEE
T ss_conf             49999870343-4334454767999999999997878999997735----677332-333---10---122026040200


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf             2688640007899999997620169718998278997999999998299344
Q gi|254780537|r  209 WPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG  260 (294)
Q Consensus       209 ~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~  260 (294)
                      .++   .+|--.+.++.++.+++.||+++ .=++.+...+..||++.|+...
T Consensus       542 ~g~---~Dppr~~v~~aI~~l~~AGI~v~-MiTGD~~~TA~aIa~~~Gi~~~  589 (917)
T COG0474         542 TGI---EDPPREDVKEAIEELREAGIKVW-MITGDHVETAIAIAKECGIEAE  589 (917)
T ss_pred             EEE---CCCCCCCHHHHHHHHHHCCCCEE-EECCCCHHHHHHHHHHHCCCCC
T ss_conf             121---28997118999999998899479-9879998999999998199867


No 264
>PTZ00097 60S ribosomal protein L19; Provisional
Probab=25.15  E-value=47  Score=13.95  Aligned_cols=17  Identities=18%  Similarity=0.202  Sum_probs=7.3

Q ss_pred             CCHHHHHHHCCCCEEEE
Q ss_conf             27124577603789999
Q gi|254780537|r   62 VTSADAIKIQNADLILC   78 (294)
Q Consensus        62 ~tp~d~~~i~~Adliv~   78 (294)
                      .|-.|++.|-+-.+|+.
T Consensus        34 ~sR~dIR~LI~dG~I~~   50 (175)
T PTZ00097         34 NSRKSVRKLIKDGLIIR   50 (175)
T ss_pred             HHHHHHHHHHHCCCEEE
T ss_conf             41999999998897786


No 265
>pfam08981 consensus
Probab=25.11  E-value=48  Score=13.86  Aligned_cols=14  Identities=7%  Similarity=0.242  Sum_probs=5.6

Q ss_pred             HHHHHCCCCCEEEE
Q ss_conf             99762016971899
Q gi|254780537|r  225 AINQMRSHKIKFIF  238 (294)
Q Consensus       225 ~~~~ik~~~v~~if  238 (294)
                      .++.+++.+++++.
T Consensus        74 ~~~~L~~~G~~V~t   87 (181)
T pfam08981        74 VRKELEERGVKVLT   87 (181)
T ss_pred             HHHHHHHCCCEEEE
T ss_conf             99999977988999


No 266
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=25.11  E-value=48  Score=13.86  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=11.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             92699999999986046433588
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQK   23 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~   23 (294)
                      |+|+++++++ +++.+|......
T Consensus         1 M~r~~l~~~~-l~L~gCa~~~~~   22 (224)
T PRK12698          1 MARYILLALA-LLLAGCSSTPKK   22 (224)
T ss_pred             CHHHHHHHHH-HHHHCCCCCCCC
T ss_conf             9779999999-998365688988


No 267
>pfam05540 Serpulina_VSP Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae.
Probab=25.07  E-value=38  Score=14.54  Aligned_cols=19  Identities=32%  Similarity=0.322  Sum_probs=14.1

Q ss_pred             CHHHHHHHHHHHHHCCCCC
Q ss_conf             9269999999998604643
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASA   19 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~   19 (294)
                      |||+++..++++++.+++.
T Consensus         1 MKK~lL~~~a~lti~~~Sv   19 (377)
T pfam05540         1 MKKFLLTALAILTIASASA   19 (377)
T ss_pred             CCCHHHHHHHHHHHHHHHH
T ss_conf             9043899999999986566


No 268
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=24.54  E-value=50  Score=13.79  Aligned_cols=60  Identities=13%  Similarity=0.098  Sum_probs=44.7

Q ss_pred             HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             7529728872268864000789999999762016971899827899799999999829934443
Q gi|254780537|r  199 EDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV  262 (294)
Q Consensus       199 ~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~  262 (294)
                      ++-|+...++.++.   +|--.+.++.++.+++.||+++ .=++.++..+..||++.|+....+
T Consensus       533 de~dl~flGlv~~~---DPpR~e~~~aI~~l~~aGI~V~-MITGD~~~TA~aIA~~lGI~~~~v  592 (900)
T PRK10517        533 DESDLILEGYIAFL---DPPKETTAPALKALKASGITVK-ILTGDSELVAAKVCHEVGLDAGEV  592 (900)
T ss_pred             CCCCCEEEEEEEEC---CCCCCHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHHHHHCCCCCCC
T ss_conf             66674799999730---7897109999999997799389-989999899999999819995444


No 269
>pfam01280 Ribosomal_L19e Ribosomal protein L19e.
Probab=24.29  E-value=49  Score=13.84  Aligned_cols=19  Identities=11%  Similarity=0.337  Sum_probs=13.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             1122135678999999999
Q gi|254780537|r  125 HAWMSLTNAMIYIENIRKA  143 (294)
Q Consensus       125 H~Wldp~~~~~~a~~I~~~  143 (294)
                      -+|+||+....++++|...
T Consensus        20 RVw~DP~~~~eI~~A~tR~   38 (148)
T pfam01280        20 RVWIDPNELSEIADAITRE   38 (148)
T ss_pred             CEEECHHHHHHHHHHHHHH
T ss_conf             1563817788999854299


No 270
>PRK10877 thiol:disulfide interchange protein DsbC; Provisional
Probab=24.26  E-value=50  Score=13.76  Aligned_cols=42  Identities=12%  Similarity=0.139  Sum_probs=25.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf             9269999999998604643358828999752899999985189148999626
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVE   52 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~   52 (294)
                      |||.|+++.++++.+++.+.++.       .-+..-.+++   .++|.++-+
T Consensus         1 mkk~l~~~~~l~~~~s~~a~aDe-------a~i~~~l~k~---g~~v~~V~~   42 (232)
T PRK10877          1 MKKGFMLFTLLAAAFSGFAHADD-------AAIQQTLAKL---GIQSADIQP   42 (232)
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHC---CCCCCEECC
T ss_conf             92669999999999862524379-------9999999983---998313556


No 271
>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic.  L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit.  The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=24.25  E-value=48  Score=13.89  Aligned_cols=16  Identities=6%  Similarity=0.146  Sum_probs=7.2

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             1221356789999999
Q gi|254780537|r  126 AWMSLTNAMIYIENIR  141 (294)
Q Consensus       126 ~Wldp~~~~~~a~~I~  141 (294)
                      +|+||+....++++|.
T Consensus        19 Vw~DP~~~~eI~~A~t   34 (164)
T cd01417          19 VWLDPNEISEISNANS   34 (164)
T ss_pred             EEECCHHHHHHHHHHH
T ss_conf             5508157779998642


No 272
>PRK03757 hypothetical protein; Provisional
Probab=24.18  E-value=50  Score=13.74  Aligned_cols=18  Identities=22%  Similarity=0.300  Sum_probs=11.9

Q ss_pred             CHHHHHHHHHHHHHCCCC
Q ss_conf             926999999999860464
Q gi|254780537|r    1 MLRYFICLLFSYIPMSAS   18 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~   18 (294)
                      |||.+++++++.++++++
T Consensus         1 mkk~~l~~~l~a~~~~~~   18 (191)
T PRK03757          1 MKKTLLGLTLGSLLFSAG   18 (191)
T ss_pred             CCHHHHHHHHHHHHHHCC
T ss_conf             904399999999986304


No 273
>pfam09748 Med10 Transcription factor subunit Med10 of Mediator complex. Med10 is one of the protein subunits of the Mediator complex, tethered to Rgr1 protein. The Mediator complex is required for the transcription of most RNA polymerase II (Pol II)-transcribed genes. Med10 specifically mediates basal-level HIS4 transcription via Gcn4, and, additionally, there is a putative requirement for Med10 in Bas2-mediated transcription. Med10 is part of the middle region of Mediator.
Probab=24.03  E-value=51  Score=13.72  Aligned_cols=39  Identities=15%  Similarity=0.319  Sum_probs=19.2

Q ss_pred             CCCCCCHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             334630111221----------------356789999999998643188899999
Q gi|254780537|r  118 VDSEPNPHAWMS----------------LTNAMIYIENIRKALTALDPSNAKKYE  156 (294)
Q Consensus       118 ~~~~~dpH~Wld----------------p~~~~~~a~~I~~~L~~~dP~~~~~y~  156 (294)
                      -+.+-||++|+-                .+..+..-..+.+.|++.+|+-.+.|+
T Consensus        64 ID~GrNPdiyTre~ve~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~fPe~~~~~~  118 (120)
T pfam09748        64 IDDGRNPDLYTREFVELVLRKNQYVKGKMHAFKKFRDVLAEELSEAFPELVAEYR  118 (120)
T ss_pred             HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf             8756584699999999999981999976999999999999999998858798751


No 274
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=23.89  E-value=51  Score=13.71  Aligned_cols=20  Identities=15%  Similarity=0.227  Sum_probs=11.0

Q ss_pred             HHHHHHHHHCCCEEEEEEEE
Q ss_conf             89999998518914899962
Q gi|254780537|r   32 IIGDITQNIAKDLVTVTTLV   51 (294)
Q Consensus        32 pl~~iv~~I~gd~v~V~~li   51 (294)
                      -+..++++++.-..+|+.+.
T Consensus        25 ~v~~La~~La~rGheV~V~t   44 (405)
T TIGR03449        25 YILETATELARRGIEVDIFT   44 (405)
T ss_pred             HHHHHHHHHHHCCCEEEEEE
T ss_conf             99999999997899699993


No 275
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=23.87  E-value=51  Score=13.70  Aligned_cols=20  Identities=10%  Similarity=0.137  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCC
Q ss_conf             26999999999860464335
Q gi|254780537|r    2 LRYFICLLFSYIPMSASATT   21 (294)
Q Consensus         2 ~r~~~~l~~~~~~~~~~~~~   21 (294)
                      ||++++.++++++++|+...
T Consensus         1 kr~l~l~~~~l~LsGC~~~~   20 (220)
T PRK12407          1 KRFLILTPMVLALCGCESPA   20 (220)
T ss_pred             CCCHHHHHHHHHHHCCCCCC
T ss_conf             91579999999973658888


No 276
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=23.79  E-value=51  Score=13.69  Aligned_cols=42  Identities=12%  Similarity=0.249  Sum_probs=27.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHCCCCC--EEEEEECCCCHHHHHHHHH
Q ss_conf             886400078999999976201697--1899827899799999999
Q gi|254780537|r  211 INSDSERSPSMMRHAINQMRSHKI--KFIFSESTNSDQPAKQVAY  253 (294)
Q Consensus       211 ~~~~~eps~~~l~~~~~~ik~~~v--~~if~e~~~~~~~~~~ia~  253 (294)
                      ..|..+++-+-|+++.++.++...  +++|.| +.+-.+++.+..
T Consensus       522 AHP~D~~Gk~lI~~i~~~s~~~~~~~rivFLe-dYDm~lAr~Lv~  565 (778)
T cd04299         522 AHPADEPGKELIQEIVEFSRRPEFRGRIVFLE-DYDMALARHLVQ  565 (778)
T ss_pred             CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEC-CCCHHHHHHHHC
T ss_conf             89987667999999999863805577589967-988699987506


No 277
>PRK10598 hypothetical protein; Provisional
Probab=23.66  E-value=51  Score=13.68  Aligned_cols=20  Identities=5%  Similarity=0.124  Sum_probs=10.5

Q ss_pred             CHHHHHHHHH-HHHHCCCCCC
Q ss_conf             9269999999-9986046433
Q gi|254780537|r    1 MLRYFICLLF-SYIPMSASAT   20 (294)
Q Consensus         1 M~r~~~~l~~-~~~~~~~~~~   20 (294)
                      |||+|+...+ +..++++|+.
T Consensus         1 mkk~~l~~~l~l~~llsGC~~   21 (186)
T PRK10598          1 MKKFLLAAALLVSGLLVGCNQ   21 (186)
T ss_pred             CCHHHHHHHHHHHHHHHCCCC
T ss_conf             912699999999999714353


No 278
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.46  E-value=52  Score=13.65  Aligned_cols=75  Identities=15%  Similarity=0.092  Sum_probs=33.3

Q ss_pred             CCHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             078999999976201-69718998278997999999998-299344432012378777886899999999999998620
Q gi|254780537|r  217 RSPSMMRHAINQMRS-HKIKFIFSESTNSDQPAKQVAYE-TNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       217 ps~~~l~~~~~~ik~-~~v~~if~e~~~~~~~~~~ia~e-~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      .-+..+.+.++.+|+ .++++...=.-.+++.++.+++- ...-+++--.+.-+.+..  .+..++-+..=+..|++||
T Consensus       185 ~~~~~l~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSaiV~~i~~~~--~~~~~~~i~~f~~~lk~ai  261 (263)
T CHL00200        185 ELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILLGSS--PEKGLDQLSEFCKVAKKSI  261 (263)
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHH
T ss_conf             4518799999999973699848735879999999997459999998789999998559--0768999999999999997


No 279
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=23.26  E-value=52  Score=13.62  Aligned_cols=133  Identities=12%  Similarity=0.097  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCC-CCCE-------EEEEC
Q ss_conf             21356789999999998-------643188899999989986301-45533789988630784-4736-------99826
Q gi|254780537|r  128 MSLTNAMIYIENIRKAL-------TALDPSNAKKYELNAREYSEK-IRNSILPLKTRIEKVDP-EKRW-------FVTSE  191 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L-------~~~dP~~~~~y~~N~~~~~~~-l~~l~~~~~~~~~~~p~-~~~~-------~v~~H  191 (294)
                      .|..|.+.. ..|++..       +...-+|+-.+++|-..|..+ +.++.+++-.-...+-- .++.       ++...
T Consensus       195 VSm~Nir~v-~~la~~~gipl~lDaaRfaENAyFIk~RE~gy~~~si~eI~rEmfs~aDg~tmSaKKD~~vniGG~ia~~  273 (459)
T PRK13237        195 VSMANMRAV-RELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEILKEMFSYADGATMSGKKDCLVNIGGFLAMN  273 (459)
T ss_pred             CCHHHHHHH-HHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEC
T ss_conf             468999999-9999980996998766788768999834420148999999999974402799983202534655679857


Q ss_pred             CCCHHHHHHC-------CCEEEE----------ECCCCCCCC-----CCHHHHHHHHHHHCCCCCEEE--------EEEC
Q ss_conf             6521457752-------972887----------226886400-----078999999976201697189--------9827
Q gi|254780537|r  192 GCLVYLAEDF-------GFKSLY----------LWPINSDSE-----RSPSMMRHAINQMRSHKIKFI--------FSES  241 (294)
Q Consensus       192 ~af~Y~~~~y-------Gl~~~~----------~~~~~~~~e-----ps~~~l~~~~~~ik~~~v~~i--------f~e~  241 (294)
                      +- ..|.+--       |+...+          ..|+.+..+     -.+.+++-+.+.+++.+|+++        |.+.
T Consensus       274 d~-~l~~~~~~~~i~~EGf~TYGGlagRDmeAlA~GL~E~~de~yl~~Ri~qv~yl~~~L~~~GVPvv~P~GGHav~iDA  352 (459)
T PRK13237        274 DD-ELFQEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQDDYIRHRIGQVRYLGEKLLAAGVPIVEPVGGHAVFLDA  352 (459)
T ss_pred             CH-HHHHHHHHHEEECCCCCCCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEH
T ss_conf             79-99999985511205875545622646999963437543679999889999999999998799703689852899746


Q ss_pred             ----------CCC-HHHHHHHHHHHCCCEEEE
Q ss_conf             ----------899-799999999829934443
Q gi|254780537|r  242 ----------TNS-DQPAKQVAYETNASYGGV  262 (294)
Q Consensus       242 ----------~~~-~~~~~~ia~e~~~~~~~~  262 (294)
                                +++ ...+..|=.+.|++..++
T Consensus       353 ~~fLPhip~~~fPa~aLa~~LY~~~GIR~~E~  384 (459)
T PRK13237        353 RRFLPHIPQDQFPAQALAAELYIDSGVRSMER  384 (459)
T ss_pred             HHHCCCCCHHHCCHHHHHHHHHHHCCCCEEEE
T ss_conf             77568998033929999999999719346854


No 280
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115   Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase)  catalyzes the second step in the de novo biosynthesis of purine:  ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide  In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=23.18  E-value=52  Score=13.61  Aligned_cols=70  Identities=20%  Similarity=0.054  Sum_probs=45.3

Q ss_pred             HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCE-EEEEECCCCHHHHHHHHHHHCCCE-EEEEECCCCCC
Q ss_conf             577529728872268864000789999999762016971-899827899799999999829934-44320123787
Q gi|254780537|r  197 LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIK-FIFSESTNSDQPAKQVAYETNASY-GGVLYVDSLSK  270 (294)
Q Consensus       197 ~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~-~if~e~~~~~~~~~~ia~e~~~~~-~~~~~~d~l~~  270 (294)
                      -.+..||...+...-..--|-   .=+..++++++++|| ...++...+++-++.-.++.+.|. + +.=-|.|+.
T Consensus        87 ~le~~Gi~~FGP~k~AA~LE~---SK~FaK~fm~~~gIPGta~Y~~Ft~~eea~~y~~~~g~PA~~-VVKadGLAA  158 (459)
T TIGR00877        87 ALEEAGIPVFGPTKEAAQLEA---SKAFAKDFMKRYGIPGTAEYEVFTDPEEAKSYIQEKGAPAEI-VVKADGLAA  158 (459)
T ss_pred             HHHHCCCCEECCCHHHHHHHC---CHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCE-EEECCCCCC
T ss_conf             898679514568878864332---878999999964898322210008989999999841889748-980566657


No 281
>PRK01742 tolB translocation protein TolB; Provisional
Probab=23.12  E-value=53  Score=13.61  Aligned_cols=29  Identities=0%  Similarity=-0.184  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             35678999999999864318889999998
Q gi|254780537|r  130 LTNAMIYIENIRKALTALDPSNAKKYELN  158 (294)
Q Consensus       130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N  158 (294)
                      +...+.+++.|+|..-+.--..+.+|..+
T Consensus       142 ~~~~R~~aH~iaD~Iye~lTG~~G~F~tr  170 (430)
T PRK01742        142 NKWLRYGAHTVSDEVFEKLTAIRGAFRTR  170 (430)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf             89989888999999999862987431004


No 282
>TIGR00020 prfB peptide chain release factor 2; InterPro: IPR004374 In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a superfamily IPR000352 from INTERPRO of RF-1, RF-2, mitochondrial, RF-H, etc proteins.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=23.12  E-value=53  Score=13.61  Aligned_cols=22  Identities=18%  Similarity=0.293  Sum_probs=16.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             4630111221356789999999
Q gi|254780537|r  120 SEPNPHAWMSLTNAMIYIENIR  141 (294)
Q Consensus       120 ~~~dpH~Wldp~~~~~~a~~I~  141 (294)
                      .-.||-+|-||..|..+.+.-.
T Consensus        40 e~~dP~fW~D~~rAq~v~~e~~   61 (373)
T TIGR00020        40 EMEDPNFWNDQERAQKVIKERS   61 (373)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHH
T ss_conf             7507866612589999999999


No 283
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=22.99  E-value=53  Score=13.59  Aligned_cols=87  Identities=7%  Similarity=0.111  Sum_probs=35.2

Q ss_pred             ECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH-HCCCC-------------CE-EEEEE-CCCCHHHHHHHHH
Q ss_conf             266521457752972887226886400078999999976-20169-------------71-89982-7899799999999
Q gi|254780537|r  190 SEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQ-MRSHK-------------IK-FIFSE-STNSDQPAKQVAY  253 (294)
Q Consensus       190 ~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~-ik~~~-------------v~-~if~e-~~~~~~~~~~ia~  253 (294)
                      ..+.|-|+..|.. +++   .+ .|.-.++.++.+.+.. .....             -+ ++|+. ...+........+
T Consensus      1035 D~dG~L~i~GR~d-~~i---Ki-~GerV~l~EVE~~L~~~~~~~~~~aVv~vpD~~~GE~lv~~~~~~~~~~~~l~~~l~ 1109 (1150)
T PRK08633       1035 DEDGFLTITDRYS-RFA---KI-GGEMVPLGAVEDELAKILGTTVVFAVTAVPDEKKGEKIVLLYTCEAEDAETVKEAIK 1109 (1150)
T ss_pred             CCCCEEEEEEECC-CEE---EE-CCEEECHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf             5898599986050-048---86-999999899999998579977079999665788880899999089999899999997


Q ss_pred             HHCCCEE----EEEECCCCCCCCCCCCCHHHH
Q ss_conf             8299344----432012378777886899999
Q gi|254780537|r  254 ETNASYG----GVLYVDSLSKPDGPAPTYLDL  281 (294)
Q Consensus       254 e~~~~~~----~~~~~d~l~~~~~~~~~Y~~~  281 (294)
                      +.+.+..    .+.++|.+..-....-||..+
T Consensus      1110 ~~~Lp~ymvP~~i~~Vd~lPlt~sGKiD~kaL 1141 (1150)
T PRK08633       1110 ESELPNLWKPSRYVQVEAIPLLGSGKLDLKGV 1141 (1150)
T ss_pred             HCCCCCCCCCCEEEEECCCCCCCCCCCCHHHH
T ss_conf             76999012889899989838999988549999


No 284
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.89  E-value=53  Score=13.58  Aligned_cols=64  Identities=19%  Similarity=0.359  Sum_probs=32.9

Q ss_pred             CCCCEEEEECH--------HHHHHHHHHCCCEEEEEEEECCCC----CCCCC-----CCCHHHHHHHCCCCEEEEECCCC
Q ss_conf             58828999752--------899999985189148999626889----80120-----22712457760378999988761
Q gi|254780537|r   21 TQKKVVLSSFS--------IIGDITQNIAKDLVTVTTLVEAGN----DSHSY-----QVTSADAIKIQNADLILCNGLHL   83 (294)
Q Consensus        21 ~~~~~Vv~s~~--------pl~~iv~~I~gd~v~V~~li~~g~----dpH~y-----e~tp~d~~~i~~Adliv~~G~~~   83 (294)
                      +++|.|++--.        -+..+++.++-.-  ++++...|.    +|+..     ..++..-..+++||+++..|..|
T Consensus       206 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv--~tt~~gkg~~p~~hp~~~G~~G~~g~~~a~~~l~~aDlvl~lG~rl  283 (574)
T PRK06466        206 AKRPVIYSGGGVILGNASALLTELAHLLNLPV--TNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARF  283 (574)
T ss_pred             CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCC--CHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCC
T ss_conf             79988997886251208999999999868881--0232146766678864368777778899999986079654347667


Q ss_pred             CHH
Q ss_conf             068
Q gi|254780537|r   84 EET   86 (294)
Q Consensus        84 E~~   86 (294)
                      ..+
T Consensus       284 ~~~  286 (574)
T PRK06466        284 DDR  286 (574)
T ss_pred             CCC
T ss_conf             753


No 285
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=22.86  E-value=53  Score=13.57  Aligned_cols=45  Identities=11%  Similarity=0.166  Sum_probs=31.1

Q ss_pred             CCCCCHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             400078999999976201-697189982789979999999982993
Q gi|254780537|r  214 DSERSPSMMRHAINQMRS-HKIKFIFSESTNSDQPAKQVAYETNAS  258 (294)
Q Consensus       214 ~~eps~~~l~~~~~~ik~-~~v~~if~e~~~~~~~~~~ia~e~~~~  258 (294)
                      ...+..+.+..+.+.+++ -++++.|.++-.+++.++..-.+.|.+
T Consensus        69 ~~~~~~~~v~~F~~~L~~~~~l~v~~~DEr~TS~~A~~~l~~~~~~  114 (141)
T PRK00109         69 TEGPMTERARKFANRLEGRFGLPVELVDERLTTVEAERMLFEAGVS  114 (141)
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf             8448899999999999997299879862432799999999973653


No 286
>PRK13122 consensus
Probab=22.81  E-value=53  Score=13.57  Aligned_cols=37  Identities=5%  Similarity=0.135  Sum_probs=17.0

Q ss_pred             HHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHH
Q ss_conf             89999999762016-97189982789979999999982
Q gi|254780537|r  219 PSMMRHAINQMRSH-KIKFIFSESTNSDQPAKQVAYET  255 (294)
Q Consensus       219 ~~~l~~~~~~ik~~-~v~~if~e~~~~~~~~~~ia~e~  255 (294)
                      ..++.+.++.+|+. +++++.-=.-.+++.++.+.+.+
T Consensus       171 ~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~i~~~A  208 (242)
T PRK13122        171 HPELKRKIESIKAIANVPVVAGFGIRTPQHVADIKEVA  208 (242)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC
T ss_conf             58899999999972599858715879999999998119


No 287
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171.
Probab=22.74  E-value=54  Score=13.56  Aligned_cols=143  Identities=13%  Similarity=0.099  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCHH--HHHHCCCEEE-----EE
Q ss_conf             99999998643188899999989986301-4553378998863078447369982665214--5775297288-----72
Q gi|254780537|r  137 IENIRKALTALDPSNAKKYELNAREYSEK-IRNSILPLKTRIEKVDPEKRWFVTSEGCLVY--LAEDFGFKSL-----YL  208 (294)
Q Consensus       137 a~~I~~~L~~~dP~~~~~y~~N~~~~~~~-l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y--~~~~yGl~~~-----~~  208 (294)
                      ...-.+.+....|.-  .|++|..-+... +.+   .+-...+.   ..  +-..-....|  ....|-|..-     ++
T Consensus       789 ~~~~~~~~~~~~PGf--~YD~NH~fW~~gel~~---~f~~av~~---~~--~y~~~~~~~Y~~~~g~f~L~~~~Wg~~P~  858 (982)
T TIGR02171       789 ATERTNVVYEKVPGF--VYDENHNFWANGELPE---EFVDAVKE---SV--LYESALRLDYVILRGLFLLPTSCWGSVPV  858 (982)
T ss_pred             HHHHHHHHHHCCCCE--EEECCCCCCCCCCCHH---HHHHHHHC---CC--CCCCCCCCCCCCHHHCEECCCCCCCCCCE
T ss_conf             543578998628973--8717758356876868---99998730---16--88731125751101101056788544451


Q ss_pred             C-----CCCCC---CCCCHHHHHHHHHHHCCCCCEEEEE-ECCCC--------------HHHHHHHHHHHCCCEEEE-EE
Q ss_conf             2-----68864---0007899999997620169718998-27899--------------799999999829934443-20
Q gi|254780537|r  209 W-----PINSD---SERSPSMMRHAINQMRSHKIKFIFS-ESTNS--------------DQPAKQVAYETNASYGGV-LY  264 (294)
Q Consensus       209 ~-----~~~~~---~eps~~~l~~~~~~ik~~~v~~if~-e~~~~--------------~~~~~~ia~e~~~~~~~~-~~  264 (294)
                      .     ....+   -+-+...|+.+++.-++.||++|-+ -||.|              ...++.|+.+.. +.... ..
T Consensus       859 ~~~d~~~~~~~~~~~~~n~~~lK~~i~~t~~kGvk~ig~i~PQ~PGY~nTgsFG~yGp~RS~A~~iid~~~-~m~k~Yph  937 (982)
T TIGR02171       859 VNVDAVLSDADQQKIEENLESLKAFIDETEKKGVKVIGTIFPQSPGYKNTGSFGRYGPRRSSAKKIIDSVK-KMEKVYPH  937 (982)
T ss_pred             EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCCC
T ss_conf             54164007777288998889888899887417818999842888876777656788987325789999986-31020780


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             12378777886899999999999998
Q gi|254780537|r  265 VDSLSKPDGPAPTYLDLLRFSLTKIV  290 (294)
Q Consensus       265 ~d~l~~~~~~~~~Y~~~m~~N~~~l~  290 (294)
                      ..-+-+.-...++|-+-|-.|.++|-
T Consensus       938 f~~fDENK~G~HDYtD~MA~n~dHLS  963 (982)
T TIGR02171       938 FILFDENKDGLHDYTDDMANNSDHLS  963 (982)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf             69971268988846533257875055


No 288
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824   Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase .    There are at least two distinct cobalamin biosynthetic pathways in bacteria :  Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii.     Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans.   This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=22.60  E-value=39  Score=14.50  Aligned_cols=44  Identities=25%  Similarity=0.389  Sum_probs=25.5

Q ss_pred             CCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf             2271245776037899998876106899999742355752111237
Q gi|254780537|r   61 QVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDG  106 (294)
Q Consensus        61 e~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~  106 (294)
                      |+.-.|+-=|+|||++=-  .+++.--..+...+....++|.++.|
T Consensus       176 QlacADLviLnKaDllda--ag~~~v~a~i~~~lpr~v~iv~a~~G  219 (349)
T TIGR02475       176 QLACADLVILNKADLLDA--AGLARVRAEIAAELPRAVKIVEASHG  219 (349)
T ss_pred             HHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf             999889998534300488--89999999999735887517751478


No 289
>PRK13135 consensus
Probab=22.57  E-value=54  Score=13.54  Aligned_cols=47  Identities=11%  Similarity=0.160  Sum_probs=23.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             6886400078999999976201-6971899827899799999999829
Q gi|254780537|r  210 PINSDSERSPSMMRHAINQMRS-HKIKFIFSESTNSDQPAKQVAYETN  256 (294)
Q Consensus       210 ~~~~~~eps~~~l~~~~~~ik~-~~v~~if~e~~~~~~~~~~ia~e~~  256 (294)
                      +......+-..++.+.+..+|+ .++++..-=.-.+++.++.+.+..+
T Consensus       180 GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~i~~~AD  227 (267)
T PRK13135        180 GVTGARSGVEATVGGNVAKIREKITVPVVVGFGISTPQQAADVAAMAD  227 (267)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCC
T ss_conf             666776444488999999998606898489816799999999980599


No 290
>PRK10159 outer membrane phosphoporin protein E; Provisional
Probab=22.53  E-value=54  Score=13.53  Aligned_cols=20  Identities=30%  Similarity=0.218  Sum_probs=14.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCC
Q ss_conf             92699999999986046433
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASAT   20 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~   20 (294)
                      |||.++++++..++++.++.
T Consensus         1 MKk~~lA~ai~a~l~s~~a~   20 (351)
T PRK10159          1 MKKSTLALVVMGIVASASVQ   20 (351)
T ss_pred             CCHHHHHHHHHHHHHCCCCC
T ss_conf             94738999999998726531


No 291
>COG4047 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.52  E-value=54  Score=13.53  Aligned_cols=125  Identities=18%  Similarity=0.058  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEE
Q ss_conf             13567899999999986431888999999899863014553378998863078447369982665214577529728872
Q gi|254780537|r  129 SLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYL  208 (294)
Q Consensus       129 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~  208 (294)
                      |+-|.+..-+...... +..+--...-.+|.+.|.+++..+-..+...+.. ...++++|-+-.-|+|-++-.-    +.
T Consensus        89 s~fnrrlieqKlrRi~-ra~~fl~~L~~~~~~~yyedm~~l~~~la~~lg~-d~esKT~VFsVKmfgYA~r~~~----g~  162 (243)
T COG4047          89 SRFNRRLIEQKLRRIR-RAESFLETLTEENIEVYYEDMSLLLEALARALGA-DRESKTVVFSVKMFGYAARIVL----GR  162 (243)
T ss_pred             CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEHHHHHHHHHHH----CC
T ss_conf             8166887999999999-8888887765631999986389999999999677-8544528988467678999983----67


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf             26886400078999999976201697189982789979999999982993444320123787
Q gi|254780537|r  209 WPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSK  270 (294)
Q Consensus       209 ~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~  270 (294)
                      ..+.|-.=|=|-|..=..-..+..+        ..+++....||+++|++   .+.+|++-.
T Consensus       163 f~pyp~eIPIPvD~Ri~rlT~~~tn--------e~Pq~~W~~iAResGIP---pLHiDSILW  213 (243)
T COG4047         163 FRPYPFEIPIPVDVRIARLTRKLTN--------EAPQKFWDKIARESGIP---PLHIDSILW  213 (243)
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCC---CCEECCEEC
T ss_conf             8887757887404899999998753--------14799999998743989---621300000


No 292
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B; InterPro: IPR010186   Some anaerobic bacteria can conserve energy by a soluble substrate level phosphorylation system which reduces glycine to acetyl-phosphate . The exact mechanism by which this conversion occurs is not currently known, but the glycine reductase system includes three sequentially acting proteins known as protein A, protein B and protein C. Protein B, the substrate-specific component of this complex, is a selenoprotein thought to convert glycine to a protein-bound Se-carboxymethyl selenoether intermediate. This intermediate is then thought to be passed to protein A, another selenoprotein, which uses it to acetylate the final component of this system, protein C. Protein C subsequently phosphorylates this acetyl group, generating acetyl phosphate.   This entry represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this entry, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity acting on X-H and Y-H to form an X-Y bond with a disulfide as acceptor, 0030700 glycine reductase complex.
Probab=22.46  E-value=54  Score=13.52  Aligned_cols=107  Identities=6%  Similarity=0.033  Sum_probs=59.3

Q ss_pred             CHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHCCC-CCCCCCCCCCC
Q ss_conf             52899999985189148999626889801202271245776037899998876106899-99974235-57521112374
Q gi|254780537|r   30 FSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYM-KYFTNLKK-GTKIITVTDGI  107 (294)
Q Consensus        30 ~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~-~~~~~~~~-~~~~i~~~~~i  107 (294)
                      .--..-+++.+-|+.+..+..+|-=.   ..-| -..++.+++|.+-+....|.=|.-. +.++++.. +--..++ +++
T Consensus       185 ~rav~mlvkklkGeef~teyPmPvfd---~v~P-~~a~~~~~kakia~vtsGGivPk~nPd~iesssaskyG~ydi-~~~  259 (431)
T TIGR01917       185 KRAVKMLVKKLKGEEFVTEYPMPVFD---RVVP-NRAVKDISKAKIALVTSGGIVPKGNPDRIESSSASKYGKYDI-DSV  259 (431)
T ss_pred             HHHHHHHHHHHCCCCEECCCCCCCCC---CCCC-CHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-HHH
T ss_conf             78999999863465100037874101---1366-167876432106777406513488876321111112454340-234


Q ss_pred             CHHHHHHCCCCCCCCCHHHH-HHHHHHHHHHHHHHH
Q ss_conf             20222100123346301112-213567899999999
Q gi|254780537|r  108 NPIGVSEDTSVDSEPNPHAW-MSLTNAMIYIENIRK  142 (294)
Q Consensus       108 ~~~~~~~~~~~~~~~dpH~W-ldp~~~~~~a~~I~~  142 (294)
                      +.+...+....||++||-+- -+++++. -++.+++
T Consensus       260 d~l~~~~~etahGG~dP~yan~~~drv~-Pvdvlrd  294 (431)
T TIGR01917       260 DDLSEEDHETAHGGYDPVYANEEADRVL-PVDVLRD  294 (431)
T ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCEE-HHHHHHH
T ss_conf             4332114421257778632477887331-0676542


No 293
>PRK03629 tolB translocation protein TolB; Provisional
Probab=22.35  E-value=54  Score=13.51  Aligned_cols=29  Identities=0%  Similarity=-0.240  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             13567899999999986431888999999
Q gi|254780537|r  129 SLTNAMIYIENIRKALTALDPSNAKKYEL  157 (294)
Q Consensus       129 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~  157 (294)
                      .+...+.+++.|+|..-+.--..+..|..
T Consensus       137 ~~~~lR~~aH~isD~Iy~~lTG~~G~F~T  165 (430)
T PRK03629        137 NKQWLRYAGHTASDEVFEKLTGIKGAFRT  165 (430)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             87999999999999999985199754101


No 294
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=22.25  E-value=55  Score=13.49  Aligned_cols=42  Identities=17%  Similarity=0.285  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf             899999997620169718-998278997999999998299344432
Q gi|254780537|r  219 PSMMRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGVL  263 (294)
Q Consensus       219 ~~~l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~~  263 (294)
                      ...|+.+++.+++.++++ +|.++  ++..++. ++++|++.+++.
T Consensus       110 ~~~l~~~v~~L~~~GirVSLFiD~--d~~qi~a-a~~~gA~~IELh  152 (243)
T COG0854         110 LDKLRDAVRRLKNAGIRVSLFIDP--DPEQIEA-AAEVGAPRIELH  152 (243)
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECC--CHHHHHH-HHHHCCCEEEEE
T ss_conf             246999999998579769997279--9899999-998499879984


No 295
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=22.22  E-value=55  Score=13.49  Aligned_cols=44  Identities=16%  Similarity=0.313  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf             89999999762016971899827899799999999829934443
Q gi|254780537|r  219 PSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV  262 (294)
Q Consensus       219 ~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~  262 (294)
                      |.++.+.++.+|+++|+|=+..-...=...+.|+++||....+.
T Consensus       122 pgdI~~ti~~lk~~~IrvsvI~l~aEv~I~k~l~~~TgG~y~V~  165 (183)
T cd01453         122 PGNIYETIDKLKKENIRVSVIGLSAEMHICKEICKATNGTYKVI  165 (183)
T ss_pred             CCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCEEEEE
T ss_conf             76499999999983978999974278999999999839976875


No 296
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=22.19  E-value=55  Score=13.49  Aligned_cols=160  Identities=16%  Similarity=0.101  Sum_probs=79.7

Q ss_pred             CCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             22712457760378999988761068999997423557521112374202221001233463011122135678999999
Q gi|254780537|r   61 QVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENI  140 (294)
Q Consensus        61 e~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I  140 (294)
                      -+|++-.+.|++||+++    |.+.-+.. +...-+                         .....|..+.....+....
T Consensus        14 ~Lt~~A~~~I~~A~vV~----G~kr~L~~-~~~~~~-------------------------~~~~~~~~~~~~~~l~~i~   63 (210)
T COG2241          14 GLTLAAIEAIRRADVVA----GSKRHLEL-LPPLIK-------------------------AERIIWPYPFDAESLEEIL   63 (210)
T ss_pred             HHCHHHHHHHHHCCEEE----ECHHHHHH-HHCCCC-------------------------CEEEEECCCCCHHHHHHHH
T ss_conf             30599999997398875----02879976-023244-------------------------3189824654168999999


Q ss_pred             HHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCC
Q ss_conf             999-------8643188899999989986301455337899886307844736998266521457752972887226886
Q gi|254780537|r  141 RKA-------LTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINS  213 (294)
Q Consensus       141 ~~~-------L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~  213 (294)
                      ...       |..=||---               .+....+..++   .....++-.=.+++|.+.+.|+...-..-.+-
T Consensus        64 ~~~~g~~v~VLasGDP~f~---------------G~g~~l~~~~~---~~~v~iIPgiSS~q~a~ARlg~~~~~~~~isl  125 (210)
T COG2241          64 AERKGRDVVVLASGDPLFS---------------GVGRLLRRKFS---CEEVEIIPGISSVQLAAARLGWPLQDTEVISL  125 (210)
T ss_pred             HHHCCCCEEEEECCCCCHH---------------HHHHHHHHHCC---CCCEEEECCHHHHHHHHHHHCCCHHHEEEEEE
T ss_conf             8737997699963896035---------------36899998647---66259922811999999984998677689983


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHH-HHHHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf             400078999999976201697189982789979-999999982993444320123787778
Q gi|254780537|r  214 DSERSPSMMRHAINQMRSHKIKFIFSESTNSDQ-PAKQVAYETNASYGGVLYVDSLSKPDG  273 (294)
Q Consensus       214 ~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~-~~~~ia~e~~~~~~~~~~~d~l~~~~~  273 (294)
                      .    .+....++..+..+..-+|+.+..+.++ .++.| .+.|..-..+..+|.|+.+++
T Consensus       126 H----gr~~~~l~~~~~~~~~~vil~~~~~~P~~IA~~L-~~~G~~~~~~~VlE~L~~~~E  181 (210)
T COG2241         126 H----GRPVELLRPLLENGRRLVILTPDDFGPAEIAKLL-TENGIGDSRVTVLENLGYPDE  181 (210)
T ss_pred             C----CCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH-HHCCCCCCEEEEECCCCCCCH
T ss_conf             3----8878889998717923999678778989999999-967998845998730399735


No 297
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=22.09  E-value=55  Score=13.47  Aligned_cols=42  Identities=12%  Similarity=0.206  Sum_probs=19.2

Q ss_pred             CCCCHHHHHHHHHHHCCCCCEEEEEEC-------CCCHHHHHHHHHHHCCCEE
Q ss_conf             000789999999762016971899827-------8997999999998299344
Q gi|254780537|r  215 SERSPSMMRHAINQMRSHKIKFIFSES-------TNSDQPAKQVAYETNASYG  260 (294)
Q Consensus       215 ~eps~~~l~~~~~~ik~~~v~~if~e~-------~~~~~~~~~ia~e~~~~~~  260 (294)
                      .+|++.++.++    ++.|++.|+..-       +.+....+..+++.|++..
T Consensus        13 ~Qi~~~di~~l----a~~GfktIInnRPd~E~~~qp~~~~~~~~a~~~Gl~y~   61 (110)
T pfam04273        13 PQIQPDDIAAA----ARAGFRSVINNRPDGEEPGQPSNAAEQAAARAAGLAYR   61 (110)
T ss_pred             CCCCHHHHHHH----HHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf             99899999999----98598388533888777899888999999998399799


No 298
>PRK10027 cryptic adenine deaminase; Provisional
Probab=22.01  E-value=40  Score=14.44  Aligned_cols=47  Identities=4%  Similarity=-0.103  Sum_probs=21.5

Q ss_pred             HHHHHHHCCCEEEEEEEECCCCC------CCCCCCCHHHHHHHCCCCEEEEEC
Q ss_conf             99999851891489996268898------012022712457760378999988
Q gi|254780537|r   34 GDITQNIAKDLVTVTTLVEAGND------SHSYQVTSADAIKIQNADLILCNG   80 (294)
Q Consensus        34 ~~iv~~I~gd~v~V~~li~~g~d------pH~ye~tp~d~~~i~~Adliv~~G   80 (294)
                      .++.+.-.+-..++...+|+-.-      --....++.+++.+-+-+-++..|
T Consensus       132 ~~ml~~~~~~pl~~~~~~pScVPat~~~E~~Ga~~~~~~~~~~l~~~~V~gLg  184 (588)
T PRK10027        132 AWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQVTGLA  184 (588)
T ss_pred             HHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
T ss_conf             99998502077405754565688888543577827999999986389843567


No 299
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=22.01  E-value=55  Score=13.46  Aligned_cols=40  Identities=18%  Similarity=0.170  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             1112213567899999999986431888999999899863014
Q gi|254780537|r  124 PHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKI  166 (294)
Q Consensus       124 pH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l  166 (294)
                      |....|+..+.+..+.+.. ++..+|+.+  |...++.....+
T Consensus       122 ~~~~rDq~~~~~A~~~f~~-~i~~yP~S~--ya~dA~~~i~~l  161 (235)
T TIGR03302       122 DDSDRDQTAAREAFEAFQE-LIRRYPNSE--YAPDAKKRMDYL  161 (235)
T ss_pred             CCCCCCHHHHHHHHHHHHH-HHHHCCCCH--HHHHHHHHHHHH
T ss_conf             6544580899999999999-998889965--799999999999


No 300
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457; InterPro: IPR006354   These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are all from the Gram-positive (low-GC) bacteria..
Probab=22.00  E-value=55  Score=13.46  Aligned_cols=121  Identities=16%  Similarity=0.194  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HH-HHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH
Q ss_conf             11122135678999999999864-31-888-9999998998630145533789988630784473699826652145775
Q gi|254780537|r  124 PHAWMSLTNAMIYIENIRKALTA-LD-PSN-AKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAED  200 (294)
Q Consensus       124 pH~Wldp~~~~~~a~~I~~~L~~-~d-P~~-~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~  200 (294)
                      |+++. .+|..+-=+.+++.|.. .| |.- ..-|       ...+.-.     .-+.......+.||+......--.++
T Consensus        35 pYLFV-TNNstrtPe~Va~~L~snfdipat~e~Vf-------T~smAta-----~y~~~~k~~~~vyViGEeGl~eaike  101 (251)
T TIGR01457        35 PYLFV-TNNSTRTPESVAELLASNFDIPATKEQVF-------TASMATA-----DYLADLKKEKSVYVIGEEGLKEAIKE  101 (251)
T ss_pred             CEEEE-ECCCCCCHHHHHHHHHHHCCCCCCCCHHH-------HHHHHHH-----HHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf             63687-27888881799999875168999721023-------4478999-----99983288028999823678999986


Q ss_pred             CCCEEE-------EECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC-----------CHHHHHHHHHHHCCCEE
Q ss_conf             297288-------7226886400078999999976201697189982789-----------97999999998299344
Q gi|254780537|r  201 FGFKSL-------YLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN-----------SDQPAKQVAYETNASYG  260 (294)
Q Consensus       201 yGl~~~-------~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~-----------~~~~~~~ia~e~~~~~~  260 (294)
                      -|+-.-       .+.|+  +...+=..++...-.|++ |.++|-+++-.           +..++..|+-.|+++-+
T Consensus       102 ~G~~~~e~E~pdyVVvGl--Dr~i~YEKfA~a~lair~-GA~Fi~TNgD~aiPTErGLlPGnGSL~~vl~v~TgVkPv  176 (251)
T TIGR01457       102 AGLVVDEDEKPDYVVVGL--DRAIDYEKFAKAALAIRK-GAKFISTNGDLAIPTERGLLPGNGSLIAVLEVATGVKPV  176 (251)
T ss_pred             CCCEECCCCCCCEEEEEC--CCCCCHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf             687323687756689812--542248889899999876-871642388876762357888507899998773572148


No 301
>PRK09304 arginine exporter protein; Provisional
Probab=21.91  E-value=28  Score=15.41  Aligned_cols=12  Identities=25%  Similarity=0.473  Sum_probs=8.6

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             301112213567
Q gi|254780537|r  122 PNPHAWMSLTNA  133 (294)
Q Consensus       122 ~dpH~Wldp~~~  133 (294)
                      -|||+|+|..-.
T Consensus       107 LNPHvyLDTv~l  118 (197)
T PRK09304        107 LNPHVYLDTFVV  118 (197)
T ss_pred             CCCHHHHHHHHH
T ss_conf             181588889999


No 302
>PRK13117 consensus
Probab=21.84  E-value=56  Score=13.44  Aligned_cols=36  Identities=19%  Similarity=0.179  Sum_probs=20.1

Q ss_pred             HHHHHHHHHCCCCCEEEE-EECCCCHHHHHHHHHHHC
Q ss_conf             999999762016971899-827899799999999829
Q gi|254780537|r  221 MMRHAINQMRSHKIKFIF-SESTNSDQPAKQVAYETN  256 (294)
Q Consensus       221 ~l~~~~~~ik~~~v~~if-~e~~~~~~~~~~ia~e~~  256 (294)
                      +-.++.+..+++++..|+ .-|..+.+.++.+++...
T Consensus       135 E~~~~~~~~~~~gl~~I~lv~Ptt~~~Ri~~i~~~a~  171 (268)
T PRK13117        135 ESAPFRQAAKKHGIAPIFICPPNADDDTLRQIASLGR  171 (268)
T ss_pred             HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf             8589999998679837998479999999999997479


No 303
>PRK13121 consensus
Probab=21.63  E-value=56  Score=13.41  Aligned_cols=150  Identities=15%  Similarity=0.102  Sum_probs=64.6

Q ss_pred             CHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHCCHHHH------HHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf             011122135678999999-99986--431888999999899863014553------378998863078447369982665
Q gi|254780537|r  123 NPHAWMSLTNAMIYIENI-RKALT--ALDPSNAKKYELNAREYSEKIRNS------ILPLKTRIEKVDPEKRWFVTSEGC  193 (294)
Q Consensus       123 dpH~Wldp~~~~~~a~~I-~~~L~--~~dP~~~~~y~~N~~~~~~~l~~l------~~~~~~~~~~~p~~~~~~v~~H~a  193 (294)
                      ||=+.+..++....+... .+.++  .+-|+..+.|.+-++++--.+-.|      +..++...+           ....
T Consensus       104 N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~-----------~~~g  172 (265)
T PRK13121        104 NPIERMGYDAFAAAARAAGVDGVLVVDYPPEECEEFAAKMRAAGIDPIFLLAPTSTDERIAAVAR-----------VASG  172 (265)
T ss_pred             HHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH-----------HCCC
T ss_conf             59999719999999987298734348999899999999998659966899589998999999996-----------2898


Q ss_pred             CHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf             214577529728872268864000789999999762016-9718998278997999999998299344432012378777
Q gi|254780537|r  194 LVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-KIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPD  272 (294)
Q Consensus       194 f~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~  272 (294)
                      |-|..-..|..        .....-..++.+.++.+|+. ++++..-=.-.+++.++.+++-...=+++--.+.-+.+. 
T Consensus       173 FiY~Vs~~GvT--------G~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~v~~~ADGvIVGSaiV~~i~~~-  243 (265)
T PRK13121        173 YVYYVSLKGVT--------GAATLDVSSVAAKLPAIRSHVPLPVGVGFGIRDAATARAVAEVADAVVIGSRLVQLIEQA-  243 (265)
T ss_pred             EEEEEECCCCC--------CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEECHHHHHHHHHC-
T ss_conf             09997555566--------777566288999999998547998599768898999999981199999848999999857-


Q ss_pred             CCCCCHHHHHHHHHHHHHHHC
Q ss_conf             886899999999999998620
Q gi|254780537|r  273 GPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       273 ~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                       ..+.-++-+..=+..|++||
T Consensus       244 -~~e~~~~~v~~fi~~lk~al  263 (265)
T PRK13121        244 -PPERAAAALTDFLAELRAAL  263 (265)
T ss_pred             -CHHHHHHHHHHHHHHHHHHH
T ss_conf             -85768999999999999986


No 304
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.60  E-value=56  Score=13.41  Aligned_cols=49  Identities=12%  Similarity=0.101  Sum_probs=26.5

Q ss_pred             CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             73699826652145775297288722688640007899999997620169718998
Q gi|254780537|r  184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFS  239 (294)
Q Consensus       184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~  239 (294)
                      +|.+.--||-=.||.+.++-.       .+..+--.+.+++++...++++|+++++
T Consensus        29 ~RavLLIhDMQ~YFv~~~~~~-------~~~~~~li~Ni~~Lr~~~~~~giPVvyT   77 (218)
T COG1535          29 KRAVLLIHDMQNYFVSPWGEN-------CPLMEQLIANIAKLRIWCKQAGIPVVYT   77 (218)
T ss_pred             CCCEEEEEHHHHHHCCCCCCC-------CCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf             633122326578524878877-------8648999999999999999829967998


No 305
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=21.57  E-value=56  Score=13.40  Aligned_cols=57  Identities=18%  Similarity=0.255  Sum_probs=30.3

Q ss_pred             EEEEECHHHHHHHHHHCCCEEE------EEEEECCCCCCCC---CCCCHHHHHHHCCCCEEEEECC
Q ss_conf             8999752899999985189148------9996268898012---0227124577603789999887
Q gi|254780537|r   25 VVLSSFSIIGDITQNIAKDLVT------VTTLVEAGNDSHS---YQVTSADAIKIQNADLILCNGL   81 (294)
Q Consensus        25 ~Vv~s~~pl~~iv~~I~gd~v~------V~~li~~g~dpH~---ye~tp~d~~~i~~Adliv~~G~   81 (294)
                      ..+-+...-..+.++++-+-|-      +...+..|.|-|-   ==.|+...+.|+.+.++..+|.
T Consensus       223 n~es~~~va~Ii~~~~~~~AVaiTd~e~ilA~vg~g~dhhi~g~~i~s~~t~~ai~~g~vv~~~~~  288 (557)
T COG3275         223 NEESLMKVAEIIYEELGAGAVAITDREKLLAFVGIGDDHHIPGKPIISSLTRKAIKTGEVVYADGN  288 (557)
T ss_pred             CHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHCCEEEECCH
T ss_conf             766599999999998488848834778788761343014578871212779999862877897150


No 306
>KOG4358 consensus
Probab=21.32  E-value=55  Score=13.48  Aligned_cols=46  Identities=22%  Similarity=0.267  Sum_probs=26.6

Q ss_pred             CEEEEECHH-H-HHHH--------HHHCCCEEEEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf             289997528-9-9999--------98518914899962688980120227124577
Q gi|254780537|r   24 KVVLSSFSI-I-GDIT--------QNIAKDLVTVTTLVEAGNDSHSYQVTSADAIK   69 (294)
Q Consensus        24 ~~Vv~s~~p-l-~~iv--------~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~   69 (294)
                      ++|..+..+ + +.++        +.=-.-++||.+|-.||..||+|..-..+--.
T Consensus       301 p~v~~~n~~~v~k~~AlHdl~l~~~~~~~rR~eVFsLsqPG~hP~nW~ais~~Cl~  356 (584)
T KOG4358         301 PKVLNSNPPPIIKYLALHDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLN  356 (584)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             36335683899999999999998601830220101305899998543776899998


No 307
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104   Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=21.22  E-value=43  Score=14.22  Aligned_cols=24  Identities=4%  Similarity=0.139  Sum_probs=12.7

Q ss_pred             CCCCHHHHHH-HHHHHCCCCCEEEE
Q ss_conf             0007899999-99762016971899
Q gi|254780537|r  215 SERSPSMMRH-AINQMRSHKIKFIF  238 (294)
Q Consensus       215 ~eps~~~l~~-~~~~ik~~~v~~if  238 (294)
                      =+-|.+-|.. +.+.++++|...++
T Consensus       227 L~GSMQ~LSD~L~~al~~~GG~l~~  251 (499)
T TIGR02733       227 LHGSMQVLSDRLVEALKRDGGRLLT  251 (499)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf             1320235789999999867987986


No 308
>TIGR03519 Bac_Flav_fam_1 Bacteroidetes-specific putative membrane protein. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.
Probab=21.18  E-value=50  Score=13.76  Aligned_cols=16  Identities=19%  Similarity=0.299  Sum_probs=9.2

Q ss_pred             CHHHHHHHHHHHHHCC
Q ss_conf             9269999999998604
Q gi|254780537|r    1 MLRYFICLLFSYIPMS   16 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~   16 (294)
                      |||.++++++.+++..
T Consensus         1 Mkki~l~~~~~~~~~~   16 (292)
T TIGR03519         1 MKKILLLLLLLLLLTV   16 (292)
T ss_pred             CCCHHHHHHHHHHHHH
T ss_conf             9605788999999987


No 309
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=21.09  E-value=58  Score=13.34  Aligned_cols=20  Identities=15%  Similarity=0.491  Sum_probs=8.7

Q ss_pred             CHHHHH-HHHHHHHHCCCCCC
Q ss_conf             926999-99999986046433
Q gi|254780537|r    1 MLRYFI-CLLFSYIPMSASAT   20 (294)
Q Consensus         1 M~r~~~-~l~~~~~~~~~~~~   20 (294)
                      |||.++ .++++++++++|.+
T Consensus         1 m~k~~~~~~l~~~l~lsgC~s   21 (160)
T PRK09967          1 MIKHLVAPLIFTSLILTGCQS   21 (160)
T ss_pred             CHHHHHHHHHHHHHHHHHCCC
T ss_conf             907899999999999984589


No 310
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=21.07  E-value=58  Score=13.34  Aligned_cols=70  Identities=10%  Similarity=0.046  Sum_probs=43.7

Q ss_pred             EEECCCCHHHH---------HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             98266521457---------752972887226886400078999999976201697189982789979999999982993
Q gi|254780537|r  188 VTSEGCLVYLA---------EDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNAS  258 (294)
Q Consensus       188 v~~H~af~Y~~---------~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~  258 (294)
                      +|+|-||++..         ..+|++-+-..|-.+..+-....|+++++..+. ++. |..-...+.+-++.+.+.+|++
T Consensus       117 ~TFHRAfD~~~d~~~al~~L~~lG~~rILTSGg~~~a~~g~~~L~~l~~~a~~-~i~-Im~GgGI~~~N~~~l~~~~g~~  194 (202)
T pfam03932       117 VTFHRAFDMCPDPEEALEQLIELGCERVLTSGGPLSALEGLEKLASLVAQAGG-RIS-IMAGAGVNAENIAELRQLTGVA  194 (202)
T ss_pred             EEEECHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC-CEE-EEECCCCCHHHHHHHHHHHCCC
T ss_conf             59862043059999999999975998787579978766749999999996599-849-9957998999999999971994


Q ss_pred             E
Q ss_conf             4
Q gi|254780537|r  259 Y  259 (294)
Q Consensus       259 ~  259 (294)
                      .
T Consensus       195 ~  195 (202)
T pfam03932       195 E  195 (202)
T ss_pred             E
T ss_conf             8


No 311
>KOG2183 consensus
Probab=21.02  E-value=58  Score=13.33  Aligned_cols=14  Identities=14%  Similarity=0.195  Sum_probs=9.2

Q ss_pred             CCEEEEEC--CCCCHH
Q ss_conf             78999988--761068
Q gi|254780537|r   73 ADLILCNG--LHLEET   86 (294)
Q Consensus        73 Adliv~~G--~~~E~~   86 (294)
                      .-++||.|  .++|.+
T Consensus        81 gPIffYtGNEGdie~F   96 (492)
T KOG2183          81 GPIFFYTGNEGDIEWF   96 (492)
T ss_pred             CCEEEEECCCCCHHHH
T ss_conf             7669994785218888


No 312
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase; InterPro: IPR005956    4-hydroxyphenylpyruvate dioxygenase (1.13.11.27 from EC) oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic . In some bacterial species, this enzyme has been studied as a hemolysin.; GO: 0003868 4-hydroxyphenylpyruvate dioxygenase activity, 0009072 aromatic amino acid family metabolic process.
Probab=20.93  E-value=48  Score=13.89  Aligned_cols=69  Identities=23%  Similarity=0.314  Sum_probs=43.4

Q ss_pred             CCCC-CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCCHHHHHHHHHHH-H
Q ss_conf             6400-078999999976201697189982789979999999982993-444320123787778868999999999999-9
Q gi|254780537|r  213 SDSE-RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNAS-YGGVLYVDSLSKPDGPAPTYLDLLRFSLTK-I  289 (294)
Q Consensus       213 ~~~e-ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~-~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~-l  289 (294)
                      |... -.+++|.|.++.=.-.||+-|-   ..+..+++++. .+..+ . ++-|+++  .|    ++|.++++.-+.. +
T Consensus       232 P~~~~k~~SQI~EfL~~y~G~GvQHiA---l~t~DI~~tV~-~Lr~rCl-Gv~FL~~--~P----~~YYd~l~~Rv~~~~  300 (379)
T TIGR01263       232 PASGRKDKSQIEEFLEFYNGAGVQHIA---LNTDDIVRTVR-ALRARCL-GVEFLDS--TP----DTYYDNLEERVGGLH  300 (379)
T ss_pred             CCCCCCCCCHHHHHHHHCCCCCEEEEE---ECCHHHHHHHH-HHHHHHC-CCEECCC--CC----HHHHHHHHHHCCCHH
T ss_conf             887888886479999860889369998---15057999999-9776414-4120488--97----167899987511023


Q ss_pred             HHH
Q ss_conf             862
Q gi|254780537|r  290 VDT  292 (294)
Q Consensus       290 ~~a  292 (294)
                      .+-
T Consensus       301 ~Ed  303 (379)
T TIGR01263       301 KED  303 (379)
T ss_pred             HHH
T ss_conf             202


No 313
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=20.91  E-value=58  Score=13.31  Aligned_cols=53  Identities=17%  Similarity=0.204  Sum_probs=37.9

Q ss_pred             CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             972887226886400078999999976201697189982789979999999982993
Q gi|254780537|r  202 GFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNAS  258 (294)
Q Consensus       202 Gl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~  258 (294)
                      +.+..++..+..   |--.+.++.++.+++.||+++.. +..++..++.||++.|+.
T Consensus       438 d~~~lG~i~L~D---~iRp~a~eaI~~Lr~~GI~vvMI-TGDn~~TA~aIA~elGID  490 (684)
T PRK01122        438 GNRVLGVIYLKD---IVKPGIKERFAQLRKMGIKTVMI-TGDNPLTAAAIAAEAGVD  490 (684)
T ss_pred             CCEEEEEEEECC---CCCHHHHHHHHHHHHCCCEEEEE-CCCCHHHHHHHHHHHCCH
T ss_conf             999999997268---89754999999999879929999-898969999999984956


No 314
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which 
Probab=20.85  E-value=58  Score=13.31  Aligned_cols=58  Identities=12%  Similarity=0.059  Sum_probs=38.8

Q ss_pred             HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf             999999762016971899827899799999999829934443201237877788689999999
Q gi|254780537|r  221 MMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLR  283 (294)
Q Consensus       221 ~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~  283 (294)
                      .=..+++.++++++++...+-..++...+.+.+.+|.+....++.+.-     -=++|-++++
T Consensus        12 ~C~~ak~~L~~~~i~y~e~di~~~~~~~~~l~~~~g~~tvPqIfi~g~-----~IGG~~~l~~   69 (72)
T cd02066          12 YCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGE-----FIGGYDDLKA   69 (72)
T ss_pred             HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCE-----EECCHHHHHH
T ss_conf             699999999956997789980598889999999849988995999998-----9816899998


No 315
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase; InterPro: IPR011790   Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases found in archaea. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases .; GO: 0008443 phosphofructokinase activity, 0006000 fructose metabolic process, 0006096 glycolysis, 0005737 cytoplasm.
Probab=20.84  E-value=50  Score=13.76  Aligned_cols=33  Identities=12%  Similarity=-0.072  Sum_probs=28.1

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             123346301112213567899999999986431
Q gi|254780537|r  116 TSVDSEPNPHAWMSLTNAMIYIENIRKALTALD  148 (294)
Q Consensus       116 ~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~d  148 (294)
                      ..-|...|.|+-+|-.+|.-+|-.|++-|+.++
T Consensus        72 ~~lH~Wfd~~~~yD~eRmGGQAGIisNLL~~L~  104 (466)
T TIGR02045        72 EELHEWFDEHLKYDEERMGGQAGIISNLLARLQ  104 (466)
T ss_pred             HHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCC
T ss_conf             578999987517650230751788998750387


No 316
>pfam07269 consensus
Probab=20.67  E-value=59  Score=13.28  Aligned_cols=16  Identities=13%  Similarity=0.210  Sum_probs=10.2

Q ss_pred             CHHHHHHHHHHHHHCC
Q ss_conf             9269999999998604
Q gi|254780537|r    1 MLRYFICLLFSYIPMS   16 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~   16 (294)
                      ||+.++++++.+..|.
T Consensus         1 MKy~ll~l~l~LAgC~   16 (55)
T pfam07269         1 MKYCLLLLILALAGCQ   16 (55)
T ss_pred             CHHHHHHHHHHHHHCC
T ss_conf             9014999999987511


No 317
>pfam05643 DUF799 Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=20.56  E-value=59  Score=13.27  Aligned_cols=80  Identities=13%  Similarity=0.145  Sum_probs=39.7

Q ss_pred             CHHHHHHHHHHHHHCCCCCCC-----------CCCE-------------EEEECHHHHHHHHHHC--CCEEEEEE----E
Q ss_conf             926999999999860464335-----------8828-------------9997528999999851--89148999----6
Q gi|254780537|r    1 MLRYFICLLFSYIPMSASATT-----------QKKV-------------VLSSFSIIGDITQNIA--KDLVTVTT----L   50 (294)
Q Consensus         1 M~r~~~~l~~~~~~~~~~~~~-----------~~~~-------------Vv~s~~pl~~iv~~I~--gd~v~V~~----l   50 (294)
                      ||+.|+++...+++.+|+...           .+|+             |-++.+.+..+..-++  |=+|-...    +
T Consensus         1 mK~lil~l~~~l~L~gCa~~~~~~~DYsaf~~skP~SILVlPpvN~S~dV~A~~~~ls~~t~PLAE~GYYVfPVavV~et   80 (215)
T pfam05643         1 MKPLILGLAAVLALSACQVQKAPDFDYTSFKESKPASILVVPPLNESPDVNGTWGMLASTAAPLSEAGYYVFPAAVVEET   80 (215)
T ss_pred             CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCHHEEEEEHHHHHHCCEEECCHHHHHHH
T ss_conf             93149999999998623489998465456750699559985788998653663231320010053286376259999999


Q ss_pred             E-CCC-CCCCCC-CCCHHHHHHHCCCCEEEEEC
Q ss_conf             2-688-980120-22712457760378999988
Q gi|254780537|r   51 V-EAG-NDSHSY-QVTSADAIKIQNADLILCNG   80 (294)
Q Consensus        51 i-~~g-~dpH~y-e~tp~d~~~i~~Adliv~~G   80 (294)
                      + ..| .||.+. ...|+-.+.|=.||.++|.-
T Consensus        81 fk~nGl~~a~~i~~v~~~Kl~eiFGADAvLYvt  113 (215)
T pfam05643        81 FKQNGLTNAADIHAVRPEKLHQIFGNDAVLYIT  113 (215)
T ss_pred             HHHCCCCCHHHHHCCCHHHHHHHHCCCEEEEEE
T ss_conf             997599998997359989999873877689987


No 318
>PRK05589 peptide chain release factor 2; Provisional
Probab=20.40  E-value=60  Score=13.24  Aligned_cols=17  Identities=29%  Similarity=0.405  Sum_probs=7.5

Q ss_pred             EEECCCCHHHHHHCCCE
Q ss_conf             98266521457752972
Q gi|254780537|r  188 VTSEGCLVYLAEDFGFK  204 (294)
Q Consensus       188 v~~H~af~Y~~~~yGl~  204 (294)
                      |....||+||--+-|.+
T Consensus       142 I~G~~ayg~Lk~E~GvH  158 (325)
T PRK05589        142 ITGEFAYGYLKAEKGIH  158 (325)
T ss_pred             EECCHHHHHHHCCCCCC
T ss_conf             85512565542157751


No 319
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006256   This group of sequences are a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and percent identity (UPGMA) trees. Members contain two or three copies of the lipoyl-binding domain. Escherichia coli AceF is included in this set while mitochondrial and some other bacterial forms are excluded.  dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006096 glycolysis, 0045254 pyruvate dehydrogenase complex.
Probab=20.32  E-value=60  Score=13.23  Aligned_cols=52  Identities=13%  Similarity=0.089  Sum_probs=36.9

Q ss_pred             CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf             7369982665214577529728872268864000789999999762016971
Q gi|254780537|r  184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIK  235 (294)
Q Consensus       184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~  235 (294)
                      +|.+|-.-|+..-|+|+||++...+-+.......+-.|++.+.+.---.+|+
T Consensus       337 GrPvv~A~P~vR~LARe~Gvdl~~vkGtg~~GRI~~EDVq~~v~~~~GtGiP  388 (655)
T TIGR01348       337 GRPVVHAAPAVRRLAREFGVDLSKVKGTGKKGRILREDVQKFVKEAVGTGIP  388 (655)
T ss_pred             CCCCEECCHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf             7230017628899988827011110136888862535799980643367875


No 320
>KOG1538 consensus
Probab=20.27  E-value=30  Score=15.27  Aligned_cols=98  Identities=8%  Similarity=0.039  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCC
Q ss_conf             11122135678999999999864318889999998998630145533789988630784473699826652145775297
Q gi|254780537|r  124 PHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGF  203 (294)
Q Consensus       124 pH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl  203 (294)
                      .|-|+|.      +-.|+..|...+-+.-....+|+++..+  -.|..++-.++...    +.+|-.|-.-+.|-+.|.+
T Consensus       728 d~gW~d~------lidI~rkld~~ere~l~~~a~ylk~l~~--~gLAaeIF~k~gD~----ksiVqlHve~~~W~eAFal  795 (1081)
T KOG1538         728 DHGWVDM------LIDIARKLDKAEREPLLLCATYLKKLDS--PGLAAEIFLKMGDL----KSLVQLHVETQRWDEAFAL  795 (1081)
T ss_pred             HCCHHHH------HHHHHHHCCHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHCCH----HHHHHHEEECCCCHHHHHH
T ss_conf             0569999------9999754255566689999999864035--34389999974227----8776534412665177777


Q ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf             288722688640007899999997620169
Q gi|254780537|r  204 KSLYLWPINSDSERSPSMMRHAINQMRSHK  233 (294)
Q Consensus       204 ~~~~~~~~~~~~eps~~~l~~~~~~ik~~~  233 (294)
                      -.....-...---|-++=+++--.+++.++
T Consensus       796 Ae~hPe~~~dVy~pyaqwLAE~DrFeEAqk  825 (1081)
T KOG1538         796 AEKHPEFKDDVYMPYAQWLAENDRFEEAQK  825 (1081)
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             664822134422336766544246899999


No 321
>PRK13238 tnaA tryptophanase; Provisional
Probab=20.13  E-value=60  Score=13.21  Aligned_cols=134  Identities=12%  Similarity=0.061  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCC-CCCE-------EEEEC
Q ss_conf             21356789999999998-------643188899999989986301-45533789988630784-4736-------99826
Q gi|254780537|r  128 MSLTNAMIYIENIRKAL-------TALDPSNAKKYELNAREYSEK-IRNSILPLKTRIEKVDP-EKRW-------FVTSE  191 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L-------~~~dP~~~~~y~~N~~~~~~~-l~~l~~~~~~~~~~~p~-~~~~-------~v~~H  191 (294)
                      .|..|.+.+ ..|++..       +...-+|+-.+++|-..|..+ +.++.+++-.-...+-- .++.       +++..
T Consensus       195 VSm~Nir~v-~~la~~~~ip~~lDaaRfaENAyFIk~RE~gY~d~si~eI~rEmfs~aDg~tmSaKKD~~vniGG~l~~~  273 (461)
T PRK13238        195 VSMANLRAV-YEIAKKYGIPVVLDAARFAENAYFIKQREPGYKDKSIKEITREMFSYADGLTMSAKKDAMVNIGGLLCFK  273 (461)
T ss_pred             CCHHHHHHH-HHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCEECCCCEEEEC
T ss_conf             468999999-9999982995998656676645788732531257999999999984523799983301210442289966


Q ss_pred             CCCHHHH--HH-----CCCEEEE----------ECCCCCCCC-----CCHHHHHHHHHHHCCCCCEEE--------EEE-
Q ss_conf             6521457--75-----2972887----------226886400-----078999999976201697189--------982-
Q gi|254780537|r  192 GCLVYLA--ED-----FGFKSLY----------LWPINSDSE-----RSPSMMRHAINQMRSHKIKFI--------FSE-  240 (294)
Q Consensus       192 ~af~Y~~--~~-----yGl~~~~----------~~~~~~~~e-----ps~~~l~~~~~~ik~~~v~~i--------f~e-  240 (294)
                      +--..|.  +.     .|+...+          .+|+.+..+     -.+.+++-+.+.+++.||+++        |.+ 
T Consensus       274 d~~~l~~~~~~~~i~~EGf~TYGGlaGRDmeAlAvGL~E~~d~dyl~~Ri~qv~yLg~~L~~~GVPvv~P~GGHAv~iDA  353 (461)
T PRK13238        274 DDSDLYTKCRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIAQVEYLGEGLEEAGVPVVTPAGGHAVFVDA  353 (461)
T ss_pred             CHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEH
T ss_conf             75999999874424205875668833877999973578760779999779999999999997799705679851899746


Q ss_pred             ----C-----CCC-HHHHHHHHHHHCCCEEEE
Q ss_conf             ----7-----899-799999999829934443
Q gi|254780537|r  241 ----S-----TNS-DQPAKQVAYETNASYGGV  262 (294)
Q Consensus       241 ----~-----~~~-~~~~~~ia~e~~~~~~~~  262 (294)
                          |     +++ ...+..|=.+.|++.+++
T Consensus       354 ~~fLPhip~~qfPa~aLa~eLY~~~GIR~vEi  385 (461)
T PRK13238        354 GKFLPHIPAEQFPAQALACELYLEAGIRAVEI  385 (461)
T ss_pred             HHHCCCCCHHHCCHHHHHHHHHHHCCCCEEEE
T ss_conf             78567998144818999999999729557875


No 322
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=20.08  E-value=60  Score=13.20  Aligned_cols=16  Identities=6%  Similarity=0.084  Sum_probs=5.3

Q ss_pred             HHHHCCHHHHHHHHHH
Q ss_conf             9863014553378998
Q gi|254780537|r  160 REYSEKIRNSILPLKT  175 (294)
Q Consensus       160 ~~~~~~l~~l~~~~~~  175 (294)
                      ..+.++|.+...+...
T Consensus        79 ~~~~~kLe~Ak~eA~~   94 (170)
T PRK08475         79 KDALKKLEEAKEKAEL   94 (170)
T ss_pred             HHHHHHHHHHHHHHHH
T ss_conf             9999999999999999


No 323
>pfam03255 ACCA Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit. Acetyl co-enzyme A carboxylase carboxyltransferase is composed of an alpha and beta subunit.
Probab=20.07  E-value=37  Score=14.66  Aligned_cols=100  Identities=4%  Similarity=-0.105  Sum_probs=45.0

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             99989986301455337899886307844736998266521457752972887226886400078999999976201697
Q gi|254780537|r  155 YELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKI  234 (294)
Q Consensus       155 y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v  234 (294)
                      ..+....+.++++++..++-   +.+.+.+++-|+=||.=.|..+.-..-.-....+ +|..--..|-+=+-...+=++.
T Consensus        30 ~~~eI~~Le~k~~~~~~~iy---s~LtpWQkVqvARHP~RP~t~DYI~~if~dF~EL-hGDR~f~DD~AIigG~a~i~~~  105 (145)
T pfam03255        30 VSDEIHRLEKKLDKLKREIY---SNLTPWQRVQLARHPDRPTTLDYIENILDDFIEL-HGDRAGADDPAIVGGLGRIDGR  105 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCEEE-CCCCCCCCCCCCEEEEEEECCE
T ss_conf             89999999999999999999---6799999999874878886999999860667763-3885666697405778899996


Q ss_pred             EEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             189982789979999999982993
Q gi|254780537|r  235 KFIFSESTNSDQPAKQVAYETNAS  258 (294)
Q Consensus       235 ~~if~e~~~~~~~~~~ia~e~~~~  258 (294)
                      +|++...+-...+-+.|.+..|.+
T Consensus       106 ~v~viG~qKG~~t~e~i~rNFGm~  129 (145)
T pfam03255       106 PVVVIGHQKGRDTKENLLRNFGMP  129 (145)
T ss_pred             EEEEEEEECCCCHHHHHHHCCCCC
T ss_conf             899998725887688888628999


No 324
>pfam05913 DUF871 Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.
Probab=20.06  E-value=61  Score=13.20  Aligned_cols=74  Identities=12%  Similarity=0.106  Sum_probs=44.4

Q ss_pred             EEEEECCCCH---------------HHHHHCCCEEEEECCCC-------CCCCCCHHH------HHHHHHHHCCCCCEEE
Q ss_conf             6998266521---------------45775297288722688-------640007899------9999976201697189
Q gi|254780537|r  186 WFVTSEGCLV---------------YLAEDFGFKSLYLWPIN-------SDSERSPSM------MRHAINQMRSHKIKFI  237 (294)
Q Consensus       186 ~~v~~H~af~---------------Y~~~~yGl~~~~~~~~~-------~~~eps~~~------l~~~~~~ik~~~v~~i  237 (294)
                      .+.+.|+=|.               -+.++||++..+.....       .++-||...      ...+........|..|
T Consensus       137 ~l~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~~rGPl~eGLPTLE~HR~~~~~~aa~~L~~~~~iD~V  216 (357)
T pfam05913       137 NLEACHNFYPRPYTGLSYEFFLEKNRWFKKYGIKTAAFIPGDGGLRGPLYEGLPTLEKHRYLPPLAAAKHLLATGLIDDV  216 (357)
T ss_pred             HEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCEE
T ss_conf             97997444799887889999999999999779968999727986668836887741987699999999999972898979


Q ss_pred             EE-ECCCCHHHHHHHHHHHCCCE
Q ss_conf             98-27899799999999829934
Q gi|254780537|r  238 FS-ESTNSDQPAKQVAYETNASY  259 (294)
Q Consensus       238 f~-e~~~~~~~~~~ia~e~~~~~  259 (294)
                      +. ++..+.+..+++++-.+-..
T Consensus       217 ~IGD~~~s~~el~~~~~~~~~~~  239 (357)
T pfam05913       217 LIGDAYASEEELKQLSEYFNEDV  239 (357)
T ss_pred             EECCCCCCHHHHHHHHHHHHCCE
T ss_conf             98699999999999999875686


Done!