Query gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 294
No_of_seqs 135 out of 2447
Neff 7.8
Searched_HMMs 39220
Date Sun May 29 22:39:19 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780537.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01137 PsaA Metal binding pro 100.0 0 0 522.9 27.9 276 17-293 11-286 (287)
2 cd01016 TroA Metal binding pro 100.0 0 0 505.6 27.4 270 23-293 1-275 (276)
3 PRK09545 znuA high-affinity zi 100.0 0 0 501.0 29.2 286 2-293 1-307 (308)
4 cd01017 AdcA Metal binding pro 100.0 0 0 490.1 28.0 271 21-293 1-281 (282)
5 cd01019 ZnuA Zinc binding prot 100.0 0 0 486.9 27.5 267 21-293 1-286 (286)
6 COG0803 LraI ABC-type metal io 100.0 0 0 473.6 28.3 270 22-293 31-301 (303)
7 pfam01297 SBP_bac_9 Periplasmi 100.0 0 0 457.7 26.8 263 26-293 1-271 (272)
8 cd01020 TroA_b Metal binding p 100.0 0 0 457.8 26.3 255 22-293 1-263 (264)
9 cd01018 ZntC Metal binding pro 100.0 0 0 449.2 26.8 254 22-289 1-264 (266)
10 COG4531 ZnuA ABC-type Zn2+ tra 100.0 0 0 389.8 22.4 287 1-293 3-316 (318)
11 cd01145 TroA_c Periplasmic bin 100.0 0 0 368.3 18.4 197 22-221 1-203 (203)
12 cd00636 TroA-like Helical back 98.4 2.7E-05 6.9E-10 56.1 13.3 132 25-188 2-146 (148)
13 pfam00148 Oxidored_nitro Nitro 94.9 0.36 9.1E-06 28.3 19.1 151 128-294 227-398 (398)
14 TIGR03659 IsdE heme ABC transp 93.8 0.63 1.6E-05 26.6 19.6 228 23-294 35-289 (289)
15 TIGR02467 CbiE precorrin-6y C5 89.3 1.9 4.9E-05 23.3 6.9 92 182-274 93-188 (210)
16 PRK10957 iron-enterobactin tra 87.9 2.3 6E-05 22.7 11.7 21 23-43 46-66 (319)
17 cd01981 Pchlide_reductase_B Pc 87.4 2.5 6.4E-05 22.5 18.7 156 128-293 246-427 (430)
18 PRK10355 xylF D-xylose transpo 85.0 3.3 8.3E-05 21.8 10.7 103 1-107 3-116 (330)
19 COG0075 Serine-pyruvate aminot 82.7 4.1 0.0001 21.1 9.4 53 22-78 80-137 (383)
20 cd03795 GT1_like_4 This family 82.6 4.1 0.0001 21.1 6.7 18 242-261 277-294 (357)
21 PRK06027 purU formyltetrahydro 81.8 3.7 9.4E-05 21.4 5.1 74 162-240 98-171 (285)
22 PRK10954 periplasmic protein d 81.4 3.1 7.9E-05 21.9 4.6 68 1-77 1-75 (207)
23 TIGR02155 PA_CoA_ligase phenyl 80.8 4.3 0.00011 20.9 5.2 93 183-290 115-219 (431)
24 cd03805 GT1_ALG2_like This fam 80.7 4.8 0.00012 20.7 5.3 16 33-48 19-34 (392)
25 PRK13010 purU formyltetrahydro 80.6 4.8 0.00012 20.6 5.6 73 163-240 104-176 (289)
26 TIGR03156 GTP_HflX GTP-binding 79.9 5 0.00013 20.5 7.1 72 29-102 18-94 (351)
27 PRK13011 formyltetrahydrofolat 79.2 5.3 0.00014 20.3 5.3 72 163-239 101-172 (287)
28 cd03817 GT1_UGDG_like This fam 79.1 4.8 0.00012 20.6 4.9 20 33-52 20-39 (374)
29 TIGR02668 moaA_archaeal probab 78.4 5.6 0.00014 20.2 5.3 66 197-270 57-127 (324)
30 pfam00121 TIM Triosephosphate 77.1 6.1 0.00016 19.9 6.7 59 184-258 157-225 (243)
31 PRK10576 iron-hydroxamate tran 76.7 6.2 0.00016 19.9 15.0 259 1-293 5-289 (292)
32 cd03814 GT1_like_2 This family 76.1 5.7 0.00014 20.1 4.6 24 33-56 20-43 (364)
33 TIGR01885 Orn_aminotrans ornit 75.4 4 0.0001 21.1 3.7 60 196-257 92-159 (426)
34 TIGR01162 purE phosphoribosyla 74.6 5.6 0.00014 20.2 4.2 63 197-262 20-83 (159)
35 cd03820 GT1_amsD_like This fam 74.2 4.6 0.00012 20.8 3.7 10 71-80 82-91 (348)
36 smart00187 INB Integrin beta s 73.9 7.3 0.00019 19.4 6.7 123 155-291 199-340 (423)
37 PHA01735 hypothetical protein 73.5 2.9 7.4E-05 22.1 2.6 37 214-250 27-63 (76)
38 PRK07810 O-succinylhomoserine 73.3 7.6 0.00019 19.3 7.8 32 145-176 252-283 (406)
39 cd01974 Nitrogenase_MoFe_beta 72.4 8 0.0002 19.1 16.0 149 128-293 259-433 (435)
40 cd03808 GT1_cap1E_like This fa 71.8 7.6 0.00019 19.3 4.4 20 33-52 16-35 (359)
41 cd01965 Nitrogenase_MoFe_beta_ 70.3 8.8 0.00022 18.9 16.9 149 128-293 255-427 (428)
42 TIGR01591 Fdh-alpha formate de 70.0 4.4 0.00011 20.9 2.9 172 29-244 112-304 (694)
43 PRK11058 putative GTPase HflX; 69.9 9 0.00023 18.8 7.4 73 28-102 25-102 (426)
44 cd03800 GT1_Sucrose_synthase T 69.4 9.2 0.00023 18.7 7.5 19 33-51 27-45 (398)
45 pfam00362 Integrin_beta Integr 69.0 9.4 0.00024 18.7 6.9 64 217-291 278-341 (424)
46 COG0788 PurU Formyltetrahydrof 68.6 9.6 0.00024 18.6 5.3 72 163-239 101-172 (287)
47 cd04962 GT1_like_5 This family 68.3 9.7 0.00025 18.6 5.9 18 33-50 18-35 (371)
48 CHL00076 chlB photochlorophyll 67.6 10 0.00025 18.5 9.8 74 183-261 302-394 (510)
49 PRK07789 acetolactate synthase 66.8 10 0.00026 18.4 7.9 81 20-102 230-327 (612)
50 PTZ00242 protein tyrosine phos 66.8 6.8 0.00017 19.6 3.2 48 216-267 27-76 (172)
51 TIGR00514 accC acetyl-CoA carb 66.7 9.2 0.00023 18.7 3.9 86 173-260 63-157 (451)
52 cd00003 PNPsynthase Pyridoxine 66.6 10 0.00027 18.4 5.3 41 219-262 109-150 (234)
53 TIGR03525 GldK gliding motilit 66.6 6.1 0.00016 19.9 3.0 31 1-31 1-31 (449)
54 TIGR01511 ATPase-IB1_Cu copper 66.5 11 0.00027 18.3 4.5 39 221-260 375-413 (545)
55 PRK13962 bifunctional phosphog 66.3 11 0.00027 18.3 6.0 21 60-80 294-318 (653)
56 PRK08462 biotin carboxylase; V 66.3 9.1 0.00023 18.8 3.8 12 70-82 74-85 (446)
57 TIGR01326 OAH_OAS_sulfhy O-ace 65.4 11 0.00028 18.2 6.1 61 191-260 110-179 (434)
58 pfam03740 PdxJ Pyridoxal phosp 64.7 11 0.00029 18.1 5.3 46 219-268 110-156 (239)
59 cd03823 GT1_ExpE7_like This fa 64.5 11 0.00029 18.1 5.0 19 34-52 22-40 (359)
60 TIGR00382 clpX ATP-dependent C 64.4 11 0.00029 18.1 5.4 61 217-282 140-202 (452)
61 pfam11897 DUF3417 Protein of u 64.4 5.4 0.00014 20.3 2.4 74 122-205 40-117 (119)
62 KOG0202 consensus 64.3 12 0.00029 18.1 5.4 108 144-259 517-625 (972)
63 KOG0553 consensus 64.1 6 0.00015 20.0 2.6 48 121-170 143-200 (304)
64 PRK07798 acyl-CoA synthetase; 64.0 12 0.0003 18.0 8.0 18 24-41 101-118 (532)
65 KOG1111 consensus 63.8 8.2 0.00021 19.1 3.2 67 48-117 171-246 (426)
66 PRK07812 O-acetylhomoserine am 63.6 12 0.0003 18.0 9.1 29 145-173 279-307 (436)
67 cd00614 CGS_like CGS_like: Cys 62.4 12 0.00032 17.8 7.9 83 145-230 219-307 (369)
68 PRK12696 flgH flagellar basal 62.1 7.2 0.00018 19.4 2.7 21 1-21 1-21 (238)
69 TIGR01116 ATPase-IIA1_Ca calci 61.7 13 0.00033 17.8 5.2 56 198-257 450-505 (800)
70 PTZ00333 triosephosphate isome 61.6 13 0.00033 17.7 7.3 59 184-258 161-230 (252)
71 COG2262 HflX GTPases [General 61.3 13 0.00033 17.7 6.2 128 29-158 21-187 (411)
72 PRK11627 hypothetical protein; 61.2 11 0.00028 18.3 3.4 20 1-20 1-20 (192)
73 PRK05265 pyridoxine 5'-phospha 61.2 13 0.00033 17.7 5.3 41 219-262 112-153 (240)
74 PRK10780 periplasmic chaperone 61.1 5.6 0.00014 20.2 1.9 34 1-34 1-34 (161)
75 PRK11411 fecB iron-dicitrate t 60.8 13 0.00034 17.6 12.4 70 191-267 195-271 (297)
76 PRK08043 bifunctional acyl-[ac 59.7 14 0.00035 17.5 3.8 10 216-225 623-632 (719)
77 cd00311 TIM Triosephosphate is 59.6 14 0.00035 17.5 7.1 60 183-258 154-223 (242)
78 COG0648 Nfo Endonuclease IV [D 59.5 13 0.00032 17.8 3.5 20 214-233 149-168 (280)
79 PRK10270 hypothetical protein; 59.5 5.7 0.00014 20.1 1.7 15 1-15 1-15 (340)
80 cd03821 GT1_Bme6_like This fam 59.5 14 0.00036 17.5 6.5 19 33-51 20-38 (375)
81 cd01976 Nitrogenase_MoFe_alpha 59.1 14 0.00036 17.5 15.5 146 128-294 252-420 (421)
82 PRK08133 O-succinylhomoserine 58.9 14 0.00036 17.4 7.6 50 145-194 240-289 (391)
83 cd06362 PBP1_mGluR Ligand bind 58.2 15 0.00037 17.4 6.5 11 71-81 229-239 (452)
84 KOG2836 consensus 58.0 14 0.00036 17.5 3.6 29 217-245 25-55 (173)
85 COG3383 Uncharacterized anaero 57.9 15 0.00038 17.3 8.8 139 30-178 371-526 (978)
86 pfam10673 DUF2487 Protein of u 57.6 15 0.00038 17.3 8.4 97 169-293 40-139 (143)
87 COG0240 GpsA Glycerol-3-phosph 56.8 15 0.00039 17.2 4.6 76 34-110 34-111 (329)
88 PRK07811 cystathionine gamma-s 56.4 16 0.0004 17.2 7.0 32 145-176 237-268 (386)
89 cd05844 GT1_like_7 Glycosyltra 56.2 16 0.0004 17.1 7.5 39 68-109 138-176 (367)
90 COG1464 NlpA ABC-type metal io 56.2 16 0.0004 17.1 3.7 126 22-163 29-176 (268)
91 PRK08134 O-acetylhomoserine am 55.6 16 0.00041 17.1 7.8 28 145-172 275-302 (433)
92 TIGR00064 ftsY signal recognit 54.6 17 0.00043 17.0 7.1 84 183-270 110-215 (284)
93 cd03799 GT1_amsK_like This is 53.8 17 0.00044 16.9 7.1 17 67-83 125-141 (355)
94 cd01967 Nitrogenase_MoFe_alpha 53.0 18 0.00045 16.8 16.3 147 128-294 240-405 (406)
95 PRK00031 lolA outer-membrane l 52.3 8.9 0.00023 18.8 1.8 21 1-21 1-21 (201)
96 PRK00315 potassium-transportin 52.1 1.8 4.6E-05 23.5 -1.8 31 117-150 124-154 (195)
97 pfam01591 6PF2K 6-phosphofruct 52.1 18 0.00047 16.7 5.8 39 205-246 98-136 (223)
98 pfam01053 Cys_Met_Meta_PP Cys/ 52.1 18 0.00047 16.7 8.4 31 145-175 232-262 (381)
99 PRK06176 cystathionine gamma-s 51.1 19 0.00048 16.6 8.3 34 145-178 228-261 (379)
100 PRK02991 D-serine dehydratase; 51.0 19 0.00048 16.6 5.9 85 172-273 253-338 (443)
101 PRK06814 acylglycerophosphoeth 50.9 19 0.00049 16.6 3.9 16 214-229 1039-1054(1139)
102 PRK00549 competence damage-ind 50.9 19 0.00049 16.6 3.7 55 33-90 22-76 (413)
103 PRK01326 prsA foldase protein 50.7 17 0.00044 16.9 3.0 29 1-29 1-33 (310)
104 PRK09701 D-allose transporter 50.7 19 0.00049 16.6 9.8 102 1-108 1-118 (311)
105 cd03801 GT1_YqgM_like This fam 49.8 20 0.0005 16.5 6.2 21 33-53 20-40 (374)
106 pfam07355 GRDB Glycine/sarcosi 49.2 20 0.00052 16.4 4.1 52 31-84 35-91 (349)
107 PRK05586 biotin carboxylase; V 49.0 9.9 0.00025 18.5 1.6 13 70-83 72-84 (447)
108 PRK13601 putative ribosomal pr 49.0 20 0.00052 16.4 4.7 50 221-270 13-65 (84)
109 PRK00094 gpsA NAD(P)H-dependen 48.8 21 0.00052 16.4 3.7 75 34-109 34-110 (325)
110 TIGR01918 various_sel_PB selen 48.6 18 0.00045 16.8 2.8 177 28-261 185-371 (433)
111 TIGR00469 pheS_mito phenylalan 47.8 20 0.0005 16.5 3.0 28 59-86 156-183 (460)
112 cd06447 D-Ser-dehyd D-Serine d 47.5 21 0.00055 16.2 6.2 85 172-273 228-313 (404)
113 cd01968 Nitrogenase_NifE_I Nit 47.5 21 0.00055 16.2 16.4 148 128-294 238-406 (410)
114 TIGR03087 stp1 sugar transfera 47.5 21 0.00055 16.2 6.5 14 244-259 312-325 (397)
115 TIGR02151 IPP_isom_2 isopenten 47.5 21 0.00055 16.2 5.9 66 211-283 164-233 (349)
116 pfam01261 AP_endonuc_2 Xylose 47.2 22 0.00055 16.2 9.2 22 217-238 132-153 (201)
117 PRK13835 conjugal transfer pro 47.0 15 0.00038 17.3 2.2 25 1-25 1-25 (144)
118 pfam12262 Lipase_bact_N Bacter 46.9 22 0.00056 16.2 3.4 32 1-32 1-33 (269)
119 PRK08248 O-acetylhomoserine am 46.8 22 0.00056 16.2 8.5 30 145-174 275-304 (431)
120 COG1022 FAA1 Long-chain acyl-C 46.3 22 0.00057 16.1 4.6 88 122-210 278-385 (613)
121 pfam09171 DUF1886 Domain of un 46.2 22 0.00057 16.1 7.9 116 159-282 115-234 (246)
122 TIGR02622 CDP_4_6_dhtase CDP-g 46.2 22 0.00057 16.1 6.3 68 183-251 4-77 (361)
123 PRK09423 gldA glycerol dehydro 45.9 23 0.00058 16.1 8.7 39 218-256 289-330 (366)
124 PRK11063 metQ DL-methionine tr 45.6 23 0.00058 16.0 3.8 136 11-162 17-177 (271)
125 COG4607 CeuA ABC-type enteroch 45.5 23 0.00059 16.0 17.3 148 123-293 148-319 (320)
126 TIGR01825 gly_Cac_T_rel pyrido 45.3 23 0.00059 16.0 6.7 137 66-209 134-351 (392)
127 PRK12450 foldase protein PrsA; 45.3 19 0.00049 16.6 2.6 30 1-30 4-36 (309)
128 PRK13883 conjugal transfer pro 45.2 23 0.00059 16.0 3.1 18 1-18 1-18 (156)
129 PRK00042 tpiA triosephosphate 45.2 23 0.00059 16.0 7.7 59 184-258 160-228 (251)
130 PRK03095 prsA peptidylprolyl i 45.1 20 0.00052 16.4 2.7 57 199-260 209-266 (287)
131 KOG1405 consensus 45.0 23 0.0006 16.0 4.5 37 207-243 279-315 (484)
132 cd03809 GT1_mtfB_like This fam 44.7 24 0.0006 16.0 5.1 11 70-80 138-148 (365)
133 PRK07503 methionine gamma-lyas 44.6 24 0.0006 15.9 7.7 30 145-174 245-274 (403)
134 cd03825 GT1_wcfI_like This fam 44.5 24 0.00061 15.9 7.4 40 32-78 18-57 (365)
135 cd00316 Oxidoreductase_nitroge 44.2 24 0.00061 15.9 17.9 201 45-294 180-399 (399)
136 pfam04788 DUF620 Protein of un 43.7 4.7 0.00012 20.7 -0.7 103 127-248 70-183 (242)
137 COG0287 TyrA Prephenate dehydr 43.5 25 0.00063 15.8 5.5 75 174-251 105-181 (279)
138 COG3048 DsdA D-serine dehydrat 43.5 25 0.00063 15.8 5.2 85 171-272 253-338 (443)
139 cd03794 GT1_wbuB_like This fam 43.5 25 0.00063 15.8 7.6 19 33-51 20-38 (394)
140 TIGR01418 PEP_synth phosphoeno 43.3 13 0.00034 17.7 1.5 56 16-85 405-461 (877)
141 TIGR03431 PhnD phosphonate ABC 43.3 25 0.00063 15.8 5.8 75 1-83 1-91 (288)
142 PRK09590 celB cellobiose phosp 43.0 25 0.00064 15.8 3.1 50 217-266 34-85 (104)
143 PTZ00216 acyl-CoA synthetase; 42.5 25 0.00065 15.7 8.5 18 24-41 195-212 (700)
144 PRK08591 acetyl-CoA carboxylas 42.2 15 0.00039 17.2 1.7 15 68-83 70-84 (449)
145 KOG4549 consensus 42.1 26 0.00066 15.7 4.1 49 214-262 40-89 (144)
146 PRK10866 outer membrane protei 41.8 20 0.0005 16.5 2.2 39 1-40 4-42 (243)
147 TIGR02339 thermosome_arch ther 41.6 26 0.00067 15.6 4.1 50 220-271 269-337 (522)
148 PRK08861 cystathionine gamma-s 41.4 26 0.00067 15.6 7.7 31 145-175 232-262 (388)
149 PRK13602 putative ribosomal pr 41.1 27 0.00068 15.6 4.7 49 222-270 16-67 (82)
150 PRK05967 cystathionine beta-ly 40.2 28 0.0007 15.5 7.7 31 145-175 242-272 (392)
151 TIGR03088 stp2 sugar transfera 40.2 28 0.0007 15.5 5.7 49 29-80 38-89 (374)
152 KOG1185 consensus 39.3 28 0.00072 15.4 5.1 29 56-84 260-288 (571)
153 PRK12789 flgI flagellar basal 39.2 15 0.00039 17.3 1.3 39 129-172 195-250 (367)
154 PRK08751 putative long-chain f 38.8 25 0.00064 15.8 2.4 16 26-41 126-141 (560)
155 PRK13138 consensus 38.5 29 0.00075 15.3 5.5 94 192-293 169-263 (264)
156 cd03804 GT1_wbaZ_like This fam 38.2 30 0.00075 15.3 8.2 12 69-80 150-161 (351)
157 PRK11251 DNA-binding transcrip 38.1 30 0.00076 15.3 4.5 66 1-67 1-75 (109)
158 PRK08463 acetyl-CoA carboxylas 38.0 22 0.00057 16.1 2.0 10 279-288 438-447 (478)
159 PRK03002 prsA peptidylprolyl i 37.9 28 0.00073 15.4 2.5 17 244-260 253-269 (285)
160 TIGR01163 rpe ribulose-phospha 37.6 30 0.00077 15.2 6.5 138 127-283 60-213 (216)
161 PRK05613 O-acetylhomoserine am 37.6 30 0.00077 15.2 7.9 60 145-204 284-348 (437)
162 KOG0053 consensus 37.4 30 0.00077 15.2 9.3 71 129-199 240-316 (409)
163 PRK02261 methylaspartate mutas 37.3 30 0.00078 15.2 3.0 37 220-256 99-135 (137)
164 TIGR01245 trpD anthranilate ph 36.7 31 0.00079 15.1 2.6 49 223-272 132-181 (331)
165 PRK13861 type IV secretion sys 36.7 20 0.00052 16.4 1.6 22 42-65 60-81 (293)
166 PRK04792 tolB translocation pr 36.4 32 0.0008 15.1 2.7 30 129-158 157-186 (450)
167 PRK06683 hypothetical protein; 36.3 32 0.00081 15.1 4.9 49 222-270 16-67 (82)
168 pfam07383 DUF1496 Protein of u 36.3 29 0.00073 15.4 2.3 33 1-33 1-33 (88)
169 PRK02910 light-independent pro 36.2 32 0.00081 15.1 11.8 185 36-261 180-385 (524)
170 cd03796 GT1_PIG-A_like This fa 36.0 32 0.00081 15.1 7.8 19 33-51 20-38 (398)
171 PRK13859 type IV secretion sys 35.9 29 0.00073 15.4 2.3 13 56-68 32-44 (55)
172 PRK11557 putative DNA-binding 35.8 32 0.00082 15.1 7.8 73 182-262 131-212 (282)
173 TIGR00670 asp_carb_tr aspartat 35.3 33 0.00084 15.0 3.3 73 33-109 60-146 (336)
174 PRK00591 prfA peptide chain re 35.2 33 0.00084 15.0 9.7 95 122-217 24-160 (360)
175 cd02812 PcrB_like PcrB_like pr 35.1 33 0.00084 15.0 7.3 65 193-262 139-203 (219)
176 PRK10307 predicted glycosyl tr 35.0 33 0.00084 15.0 10.9 19 33-51 21-39 (415)
177 COG4126 Hydantoin racemase [Am 34.8 33 0.00085 15.0 4.3 61 198-260 141-201 (230)
178 TIGR00559 pdxJ pyridoxal phosp 34.8 33 0.00085 14.9 5.3 41 219-262 111-153 (265)
179 pfam00731 AIRC AIR carboxylase 34.7 33 0.00085 14.9 6.7 46 217-262 39-84 (150)
180 CHL00099 ilvB acetohydroxyacid 34.7 34 0.00085 14.9 5.5 24 63-86 271-294 (588)
181 COG0725 ModA ABC-type molybdat 34.5 34 0.00086 14.9 5.4 65 21-94 29-97 (258)
182 cd06350 PBP1_GPCR_family_C_lik 34.2 34 0.00087 14.9 6.9 20 218-237 202-221 (348)
183 COG4770 Acetyl/propionyl-CoA c 34.1 17 0.00043 16.9 0.9 17 186-202 430-446 (645)
184 PRK08316 acyl-CoA synthetase; 34.1 34 0.00087 14.9 7.5 16 24-39 109-124 (525)
185 pfam02153 PDH Prephenate dehyd 34.0 34 0.00088 14.9 5.2 82 168-251 80-168 (258)
186 TIGR00839 aspA aspartate ammon 33.9 13 0.00033 17.7 0.3 184 70-280 72-274 (469)
187 PTZ00008 (NAP-S) nucleosome as 33.8 35 0.00088 14.8 3.4 68 133-200 30-97 (288)
188 PRK07504 O-succinylhomoserine 33.6 35 0.00089 14.8 7.9 31 145-175 244-274 (397)
189 PRK10290 superoxide dismutase; 33.4 30 0.00075 15.3 2.0 21 1-21 1-21 (173)
190 PRK07050 cystathionine beta-ly 33.3 35 0.0009 14.8 7.4 85 145-231 244-335 (394)
191 TIGR02329 propionate_PrpR prop 33.3 35 0.0009 14.8 3.7 59 191-260 109-167 (658)
192 pfam08139 LPAM_1 Prokaryotic m 32.8 33 0.00085 14.9 2.2 20 1-20 1-20 (26)
193 TIGR01854 lipid_A_lpxH UDP-2,3 32.8 36 0.00092 14.7 4.7 47 214-260 48-96 (241)
194 COG5633 Predicted periplasmic 32.6 27 0.00069 15.6 1.7 22 1-22 1-22 (123)
195 TIGR01465 cobM_cbiF precorrin- 32.6 23 0.0006 16.0 1.4 39 62-104 14-53 (252)
196 PRK09028 cystathionine beta-ly 32.4 36 0.00093 14.7 7.4 31 145-175 239-269 (394)
197 cd04955 GT1_like_6 This family 32.4 36 0.00093 14.7 7.0 19 33-51 21-39 (363)
198 pfam02669 KdpC K+-transporting 32.3 6 0.00015 20.0 -1.7 98 49-150 53-153 (188)
199 pfam09403 FadA Adhesion protei 32.2 23 0.0006 16.0 1.3 16 1-16 1-16 (126)
200 cd02037 MRP-like MRP (Multiple 32.1 37 0.00094 14.7 4.9 69 197-267 86-169 (169)
201 TIGR00885 fucP L-fucose:H+ sym 32.0 14 0.00035 17.5 0.2 61 20-80 128-192 (427)
202 PRK04405 prsA peptidylprolyl i 32.0 33 0.00085 14.9 2.1 18 243-260 263-280 (298)
203 TIGR01437 selA_rel pyridoxal p 31.8 37 0.00095 14.6 4.8 135 30-177 168-311 (391)
204 cd01144 BtuF Cobalamin binding 31.5 38 0.00096 14.6 13.5 107 130-253 91-206 (245)
205 PTZ00151 translationally contr 31.5 38 0.00096 14.6 4.4 37 131-167 91-127 (173)
206 COG0041 PurE Phosphoribosylcar 31.3 38 0.00097 14.6 5.4 45 217-261 41-85 (162)
207 TIGR02992 ectoine_eutC ectoine 31.2 38 0.00097 14.6 2.7 64 67-147 189-252 (326)
208 TIGR03516 ppisom_GldI peptidyl 31.2 30 0.00077 15.2 1.8 21 1-21 1-21 (177)
209 TIGR01522 ATPase-IIA2_Ca calci 31.1 38 0.00097 14.5 6.2 90 159-260 454-543 (856)
210 PRK13280 N-glycosylase/DNA lya 30.8 39 0.00099 14.5 9.9 108 156-272 121-232 (265)
211 PRK05994 O-acetylhomoserine am 30.7 39 0.00099 14.5 7.7 30 146-175 275-304 (426)
212 KOG0256 consensus 30.6 39 0.00099 14.5 4.1 39 199-237 221-263 (471)
213 cd01966 Nitrogenase_NifN_1 Nit 30.0 40 0.001 14.4 14.7 147 128-293 256-416 (417)
214 cd01451 vWA_Magnesium_chelatas 30.0 40 0.001 14.4 5.8 52 215-269 114-168 (178)
215 COG3470 Tpd Uncharacterized pr 30.0 27 0.00068 15.6 1.3 73 1-77 3-75 (179)
216 cd02072 Glm_B12_BD B12 binding 29.4 41 0.001 14.4 2.8 35 217-251 92-126 (128)
217 PRK10449 heat-inducible protei 29.3 40 0.001 14.4 2.1 23 1-24 1-23 (140)
218 TIGR01826 CofD_related conserv 29.3 36 0.00091 14.7 1.9 60 219-278 177-241 (331)
219 PRK05445 hypothetical protein; 29.2 41 0.001 14.3 5.0 48 135-182 9-56 (166)
220 PHA00019 phage assembly protei 29.1 41 0.0011 14.3 4.0 42 1-42 1-42 (428)
221 PRK08507 prephenate dehydrogen 28.9 41 0.0011 14.3 3.2 66 186-251 108-178 (275)
222 PRK06882 acetolactate synthase 28.7 42 0.0011 14.3 7.0 64 21-86 206-286 (574)
223 PRK08249 cystathionine gamma-s 28.6 42 0.0011 14.3 8.6 30 145-174 242-271 (398)
224 COG2873 MET17 O-acetylhomoseri 28.5 42 0.0011 14.3 5.8 103 137-243 265-382 (426)
225 PRK06934 flavodoxin; Provision 28.3 43 0.0011 14.2 6.7 28 66-93 53-82 (221)
226 PRK08527 acetolactate synthase 28.2 43 0.0011 14.2 10.1 129 21-160 204-349 (560)
227 cd03818 GT1_ExpC_like This fam 28.2 43 0.0011 14.2 5.3 20 33-52 13-32 (396)
228 cd02767 MopB_ydeP The MopB_yde 28.1 43 0.0011 14.2 7.2 107 66-172 157-284 (574)
229 pfam00838 TCTP Translationally 28.0 43 0.0011 14.2 4.4 38 130-167 86-123 (166)
230 PRK09495 glnH glutamine ABC tr 28.0 43 0.0011 14.2 3.2 34 1-34 1-39 (247)
231 pfam06437 ISN1 IMP-specific 5' 27.7 21 0.00053 16.4 0.4 78 151-229 186-270 (404)
232 COG0149 TpiA Triosephosphate i 27.7 44 0.0011 14.2 8.2 94 171-286 146-248 (251)
233 PRK08045 cystathionine gamma-s 27.6 44 0.0011 14.2 7.8 50 145-194 231-280 (386)
234 TIGR01368 CPSaseIIsmall carbam 27.6 44 0.0011 14.1 3.9 49 44-93 80-130 (383)
235 pfam03652 UPF0081 Uncharacteri 27.5 44 0.0011 14.1 6.4 46 213-258 65-111 (134)
236 PRK06767 methionine gamma-lyas 27.5 44 0.0011 14.1 7.9 57 145-201 240-296 (386)
237 PRK11572 copper homeostasis pr 27.5 44 0.0011 14.1 7.1 69 188-260 118-195 (248)
238 TIGR01405 polC_Gram_pos DNA po 27.3 43 0.0011 14.2 2.0 73 22-94 233-308 (1264)
239 pfam07225 NDUF_B4 NADH-ubiquin 27.2 30 0.00076 15.3 1.2 21 51-71 10-30 (125)
240 PRK09934 putative fimbrial pro 27.0 42 0.0011 14.3 1.9 18 1-18 1-18 (171)
241 TIGR02747 TraV type IV conjuga 27.0 39 0.00099 14.5 1.7 18 1-18 1-20 (174)
242 PRK12999 pyruvate carboxylase; 26.9 31 0.0008 15.1 1.2 30 201-232 704-733 (1147)
243 pfam08123 DOT1 Histone methyla 26.8 45 0.0012 14.1 4.3 23 85-107 29-53 (205)
244 cd01418 Ribosomal_L19e_A Ribos 26.7 34 0.00087 14.9 1.4 19 125-143 18-36 (145)
245 pfam07437 YfaZ YfaZ precursor. 26.6 38 0.00097 14.6 1.6 42 1-54 1-42 (180)
246 PRK05968 hypothetical protein; 26.4 46 0.0012 14.0 8.6 30 145-174 241-270 (389)
247 pfam10933 DUF2827 Protein of u 26.4 46 0.0012 14.0 3.6 68 63-135 66-142 (364)
248 pfam01497 Peripla_BP_2 Peripla 26.4 46 0.0012 14.0 15.0 110 128-253 93-214 (236)
249 COG0626 MetC Cystathionine bet 26.3 46 0.0012 14.0 9.1 81 145-230 244-331 (396)
250 PRK08655 prephenate dehydrogen 26.2 46 0.0012 14.0 4.6 37 215-252 343-382 (441)
251 PRK04043 tolB translocation pr 26.1 46 0.0012 14.0 2.5 76 1-79 1-93 (419)
252 pfam00875 DNA_photolyase DNA p 26.0 47 0.0012 14.0 6.8 18 222-239 106-123 (164)
253 PRK07671 cystathionine beta-ly 25.9 47 0.0012 14.0 8.1 55 140-194 222-277 (377)
254 KOG2847 consensus 25.9 41 0.0011 14.3 1.7 57 83-150 54-111 (286)
255 PRK06702 O-acetylhomoserine am 25.9 47 0.0012 13.9 6.6 29 146-174 273-301 (432)
256 PRK08247 cystathionine gamma-s 25.8 47 0.0012 13.9 5.7 50 145-194 230-279 (366)
257 TIGR00972 3a0107s01c2 phosphat 25.4 47 0.0012 13.9 1.9 135 134-280 96-244 (248)
258 cd00617 Tnase_like Tryptophana 25.4 48 0.0012 13.9 3.6 134 128-262 170-359 (431)
259 PRK08570 rpl19e 50S ribosomal 25.3 39 0.00098 14.5 1.5 19 125-143 21-39 (150)
260 pfam07901 DUF1672 Protein of u 25.3 48 0.0012 13.9 2.1 19 1-19 1-19 (304)
261 COG2344 AT-rich DNA-binding pr 25.3 48 0.0012 13.9 4.5 92 166-260 68-174 (211)
262 cd00481 Ribosomal_L19e Ribosom 25.2 46 0.0012 14.0 1.8 19 125-143 18-36 (145)
263 COG0474 MgtA Cation transport 25.2 48 0.0012 13.9 7.8 115 130-260 474-589 (917)
264 PTZ00097 60S ribosomal protein 25.2 47 0.0012 14.0 1.9 17 62-78 34-50 (175)
265 pfam08981 consensus 25.1 48 0.0012 13.9 6.0 14 225-238 74-87 (181)
266 PRK12698 flgH flagellar basal 25.1 48 0.0012 13.9 2.5 22 1-23 1-22 (224)
267 pfam05540 Serpulina_VSP Serpul 25.1 38 0.00098 14.5 1.4 19 1-19 1-19 (377)
268 PRK10517 magnesium-transportin 24.5 50 0.0013 13.8 7.3 60 199-262 533-592 (900)
269 pfam01280 Ribosomal_L19e Ribos 24.3 49 0.0012 13.8 1.8 19 125-143 20-38 (148)
270 PRK10877 thiol:disulfide inter 24.3 50 0.0013 13.8 1.9 42 1-52 1-42 (232)
271 cd01417 Ribosomal_L19e_E Ribos 24.2 48 0.0012 13.9 1.8 16 126-141 19-34 (164)
272 PRK03757 hypothetical protein; 24.2 50 0.0013 13.7 2.2 18 1-18 1-18 (191)
273 pfam09748 Med10 Transcription 24.0 51 0.0013 13.7 3.7 39 118-156 64-118 (120)
274 TIGR03449 mycothiol_MshA UDP-N 23.9 51 0.0013 13.7 9.0 20 32-51 25-44 (405)
275 PRK12407 flgH flagellar basal 23.9 51 0.0013 13.7 1.9 20 2-21 1-20 (220)
276 cd04299 GT1_Glycogen_Phosphory 23.8 51 0.0013 13.7 2.0 42 211-253 522-565 (778)
277 PRK10598 hypothetical protein; 23.7 51 0.0013 13.7 2.5 20 1-20 1-21 (186)
278 CHL00200 trpA tryptophan synth 23.5 52 0.0013 13.7 7.5 75 217-293 185-261 (263)
279 PRK13237 tyrosine phenol-lyase 23.3 52 0.0013 13.6 3.6 133 128-262 195-384 (459)
280 TIGR00877 purD phosphoribosyla 23.2 52 0.0013 13.6 4.0 70 197-270 87-158 (459)
281 PRK01742 tolB translocation pr 23.1 53 0.0013 13.6 2.5 29 130-158 142-170 (430)
282 TIGR00020 prfB peptide chain r 23.1 53 0.0013 13.6 4.1 22 120-141 40-61 (373)
283 PRK08633 2-acyl-glycerophospho 23.0 53 0.0013 13.6 4.6 87 190-281 1035-1141(1150)
284 PRK06466 acetolactate synthase 22.9 53 0.0014 13.6 7.6 64 21-86 206-286 (574)
285 PRK00109 Holliday junction res 22.9 53 0.0014 13.6 6.4 45 214-258 69-114 (141)
286 PRK13122 consensus 22.8 53 0.0014 13.6 7.2 37 219-255 171-208 (242)
287 TIGR02171 Fb_sc_TIGR02171 Fibr 22.7 54 0.0014 13.6 2.3 143 137-290 789-963 (982)
288 TIGR02475 CobW cobalamin biosy 22.6 39 0.00099 14.5 1.0 44 61-106 176-219 (349)
289 PRK13135 consensus 22.6 54 0.0014 13.5 7.5 47 210-256 180-227 (267)
290 PRK10159 outer membrane phosph 22.5 54 0.0014 13.5 2.0 20 1-20 1-20 (351)
291 COG4047 Uncharacterized protei 22.5 54 0.0014 13.5 11.7 125 129-270 89-213 (243)
292 TIGR01917 gly_red_sel_B glycin 22.5 54 0.0014 13.5 2.6 107 30-142 185-294 (431)
293 PRK03629 tolB translocation pr 22.4 54 0.0014 13.5 2.6 29 129-157 137-165 (430)
294 COG0854 PdxJ Pyridoxal phospha 22.3 55 0.0014 13.5 5.4 42 219-263 110-152 (243)
295 cd01453 vWA_transcription_fact 22.2 55 0.0014 13.5 5.9 44 219-262 122-165 (183)
296 COG2241 CobL Precorrin-6B meth 22.2 55 0.0014 13.5 5.1 160 61-273 14-181 (210)
297 pfam04273 DUF442 Putative phos 22.1 55 0.0014 13.5 4.8 42 215-260 13-61 (110)
298 PRK10027 cryptic adenine deami 22.0 40 0.001 14.4 1.0 47 34-80 132-184 (588)
299 TIGR03302 OM_YfiO outer membra 22.0 55 0.0014 13.5 2.6 40 124-166 122-161 (235)
300 TIGR01457 HAD-SF-IIA-hyp2 HAD- 22.0 55 0.0014 13.5 4.0 121 124-260 35-176 (251)
301 PRK09304 arginine exporter pro 21.9 28 0.00072 15.4 0.2 12 122-133 107-118 (197)
302 PRK13117 consensus 21.8 56 0.0014 13.4 10.4 36 221-256 135-171 (268)
303 PRK13121 consensus 21.6 56 0.0014 13.4 7.7 150 123-293 104-263 (265)
304 COG1535 EntB Isochorismate hyd 21.6 56 0.0014 13.4 3.3 49 184-239 29-77 (218)
305 COG3275 LytS Putative regulato 21.6 56 0.0014 13.4 2.9 57 25-81 223-288 (557)
306 KOG4358 consensus 21.3 55 0.0014 13.5 1.6 46 24-69 301-356 (584)
307 TIGR02733 desat_CrtD C-3',4' d 21.2 43 0.0011 14.2 1.0 24 215-238 227-251 (499)
308 TIGR03519 Bac_Flav_fam_1 Bacte 21.2 50 0.0013 13.8 1.4 16 1-16 1-16 (292)
309 PRK09967 putative outer membra 21.1 58 0.0015 13.3 2.2 20 1-20 1-21 (160)
310 pfam03932 CutC CutC family. Co 21.1 58 0.0015 13.3 8.4 70 188-259 117-195 (202)
311 KOG2183 consensus 21.0 58 0.0015 13.3 2.1 14 73-86 81-96 (492)
312 TIGR01263 4HPPD 4-hydroxypheny 20.9 48 0.0012 13.9 1.2 69 213-292 232-303 (379)
313 PRK01122 potassium-transportin 20.9 58 0.0015 13.3 6.1 53 202-258 438-490 (684)
314 cd02066 GRX_family Glutaredoxi 20.8 58 0.0015 13.3 4.6 58 221-283 12-69 (72)
315 TIGR02045 P_fruct_ADP ADP-spec 20.8 50 0.0013 13.8 1.3 33 116-148 72-104 (466)
316 pfam07269 consensus 20.7 59 0.0015 13.3 2.0 16 1-16 1-16 (55)
317 pfam05643 DUF799 Putative bact 20.6 59 0.0015 13.3 2.4 80 1-80 1-113 (215)
318 PRK05589 peptide chain release 20.4 60 0.0015 13.2 4.4 17 188-204 142-158 (325)
319 TIGR01348 PDHac_trf_long pyruv 20.3 60 0.0015 13.2 2.8 52 184-235 337-388 (655)
320 KOG1538 consensus 20.3 30 0.00076 15.3 0.1 98 124-233 728-825 (1081)
321 PRK13238 tnaA tryptophanase; P 20.1 60 0.0015 13.2 3.6 134 128-262 195-385 (461)
322 PRK08475 F0F1 ATP synthase sub 20.1 60 0.0015 13.2 2.2 16 160-175 79-94 (170)
323 pfam03255 ACCA Acetyl co-enzym 20.1 37 0.00094 14.7 0.5 100 155-258 30-129 (145)
324 pfam05913 DUF871 Bacterial pro 20.1 61 0.0015 13.2 5.1 74 186-259 137-239 (357)
No 1
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=522.88 Aligned_cols=276 Identities=43% Similarity=0.708 Sum_probs=263.4
Q ss_pred CCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 64335882899975289999998518914899962688980120227124577603789999887610689999974235
Q gi|254780537|r 17 ASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKK 96 (294)
Q Consensus 17 ~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~ 96 (294)
.+++++|++||||++|+++||++|+||+++|++|+|+|.|||+|||+|+|+++|++|||||+||.+||+|+.+++++..+
T Consensus 11 ~~~~~~k~~Vvtt~~pl~~~v~~I~Gd~v~V~~Lvp~g~dPH~yep~p~d~~~l~~Adliv~~G~~lE~~~~k~~~~~~~ 90 (287)
T cd01137 11 PATAASKLKVVATFSILADIARNIAGDRVNVTSIVPPGADPHEYEPTPSDIKKLSKADLILYNGLNLEPWLERLVKNAGK 90 (287)
T ss_pred CCCCCCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCC
T ss_conf 75458996699987699999999818845999821879897568899999999957999998588741789999996066
Q ss_pred CCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 57521112374202221001233463011122135678999999999864318889999998998630145533789988
Q gi|254780537|r 97 GTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTR 176 (294)
Q Consensus 97 ~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~ 176 (294)
+.+++.++++++.+...+ +++|++.|||+||||.|++.++++|+++|+++||+|+++|++|+++|.++|++|+++++..
T Consensus 91 ~~~~v~~~~~i~~~~~~~-~~~~~~~DPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~Ld~~~~~~ 169 (287)
T cd01137 91 DVPVVAVSEGIDPIPLEE-GHYKGKPDPHAWMSPKNAIIYVKNIAKALSEADPANAETYQKNAAAYKAKLKALDEWAKAK 169 (287)
T ss_pred CCCEEECCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 898895358843104556-6788999986357999999999999999998682122899999999999999999999999
Q ss_pred HHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 63078447369982665214577529728872268864000789999999762016971899827899799999999829
Q gi|254780537|r 177 IEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETN 256 (294)
Q Consensus 177 ~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~ 256 (294)
++++|..+|.|+++|++|+||+++|||++.++.+++++.||||++|+++++.||+++|+|||+|++++++.+++||+++|
T Consensus 170 l~~vp~~~~~~vt~H~af~Yfa~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~i~~if~E~~~~~k~a~~ia~e~g 249 (287)
T cd01137 170 FATIPAEKRKLVTSEGAFSYFAKAYGLKEAYLWPINTEEEGTPKQVATLIEQVKKEKVPAVFVESTVNDRLMKQVAKETG 249 (287)
T ss_pred HHCCCCCCCEEEEECCHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC
T ss_conf 72487435557851741689998679917764412786666999999999999852997899858999099999999729
Q ss_pred CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 9344432012378777886899999999999998620
Q gi|254780537|r 257 ASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 257 ~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
+++..++++|+++..+++++||++||++|+++|.+||
T Consensus 250 ~~v~~~l~~d~l~~~~~~~~tY~~~m~~N~~~l~~aL 286 (287)
T cd01137 250 AKIGGQLYTDSLSEKGGPADTYLDMMEHNLDTIVEGL 286 (287)
T ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 9714625655678889983759999999999999864
No 2
>cd01016 TroA Metal binding protein TroA. These proteins have been shown to function as initial receptors in ABC transport of Zn2+ and possibly Fe3+ in many eubacterial species. The TroA proteins belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=505.56 Aligned_cols=270 Identities=26% Similarity=0.428 Sum_probs=252.5
Q ss_pred CCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 82899975289999998518914899962688980120227124577603789999887610689999974235575211
Q gi|254780537|r 23 KKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIIT 102 (294)
Q Consensus 23 ~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~ 102 (294)
||+||||++||++||++|+||+++|++|+|+|.|||+|||+|+|+++|++|||||+||.+||+|+.+++.+...+..++.
T Consensus 1 kP~Vvtt~~pl~~iv~~I~Gd~v~V~~lv~~g~dPH~yep~p~d~~~l~~ADlii~~G~~lE~~~~~~~~~~~~~~~v~~ 80 (276)
T cd01016 1 KPNVVTTTGMIADAVENIGGDHVEVTGLMGPGVDPHLYKATAGDVEKLQNADVVFYNGLHLEGKMSDVLSKLGSSKSVIA 80 (276)
T ss_pred CCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCCEEE
T ss_conf 99899968099999999808816999802889896468799999999967999998488631789999985458984797
Q ss_pred CCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 12374202221001233463011122135678999999999864318889999998998630145533789988630784
Q gi|254780537|r 103 VTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDP 182 (294)
Q Consensus 103 ~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~ 182 (294)
+++++...... +.++++++|||+||||.|++.++++|++.|+++||+|+++|++|+++|.++|++|+.+++..++.+|.
T Consensus 81 ~~~~~~~~~~~-~~~~~~~~DPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~Ld~~~~~~l~~~p~ 159 (276)
T cd01016 81 LEDTLDRSQLI-LDEEEGTYDPHIWFDVKLWKYAVKAVAEVLSEKLPEHKDEFQANSEAYVEELDSLDAYAKKKIAEIPE 159 (276)
T ss_pred EECCCCCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 02466744456-55568999986447999999999999999998683128999999999999999999999998622555
Q ss_pred CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE--
Q ss_conf 473699826652145775297288722688640007899999997620169718998278997999999998299344--
Q gi|254780537|r 183 EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG-- 260 (294)
Q Consensus 183 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~-- 260 (294)
++|.|||+|+||+||+++|||+++++.+++++.||||++|+++++.||+++|++||+|++++++.+++|+++++++..
T Consensus 160 ~~r~~vt~H~Af~Yfa~~ygl~~~~~~~~~~~~epsp~~l~~li~~ik~~~v~~If~E~~~~~k~~~~i~~~~~a~~~~~ 239 (276)
T cd01016 160 QQRVLVTAHDAFGYFGRAYGFEVKGLQGISTDSEAGLRDINELVDLIVERKIKAIFVESSVNQKSIEALQDAVKARGHDV 239 (276)
T ss_pred CCEEEEEECCCHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCEE
T ss_conf 56089984640677998669827314246888888979999999999983999999848999599999999983357424
Q ss_pred ---EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf ---432012378777886899999999999998620
Q gi|254780537|r 261 ---GVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 261 ---~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
..++.|++++.+.+++||++|||+|+++|++||
T Consensus 240 ~~~~~l~~d~~~~~~~~~~tY~~~M~~N~~~l~eaL 275 (276)
T cd01016 240 QIGGELYSDAMGEEGTSEGTYIGMFKHNVDTIVEAL 275 (276)
T ss_pred EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 316712323678889987778999999999999972
No 3
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=100.00 E-value=0 Score=501.04 Aligned_cols=286 Identities=18% Similarity=0.303 Sum_probs=256.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECC
Q ss_conf 26999999999860464335882899975289999998518914899962688980120227124577603789999887
Q gi|254780537|r 2 LRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGL 81 (294)
Q Consensus 2 ~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~ 81 (294)
||+|+.+.++.++.++.+.+.+++|||||+|+++||++||||+++|++|+|+|+|||+|+|+|+|+++|++||+|||||.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ak~~Vvtsi~Pl~~l~~~I~gd~~~V~~Lvp~g~dPH~yep~Psd~~~l~~ADli~~~G~ 80 (308)
T PRK09545 1 KKTLLFAALSAALWGGATQAANAAVVASIKPLGFIASAIADGVTETEVLLPDGASPHDYSLRPSDVKRLQSADLVVWVGP 80 (308)
T ss_pred CCCHHHHHHHHHHHCCCHHCCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECC
T ss_conf 90449999999996550013898399987689999999848972799812899897467689999999860999999586
Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCC--CCCHHH------------------HHHCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 610689999974235575211123--742022------------------210012334630111221356789999999
Q gi|254780537|r 82 HLEETYMKYFTNLKKGTKIITVTD--GINPIG------------------VSEDTSVDSEPNPHAWMSLTNAMIYIENIR 141 (294)
Q Consensus 82 ~~E~~~~~~~~~~~~~~~~i~~~~--~i~~~~------------------~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~ 141 (294)
+||+|+.+.+.+.... +++.+++ ++..+. ..+++|+|++.|||+||||.|++.++++|+
T Consensus 81 ~lE~~l~k~l~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~h~hg~~DPH~WldP~na~~~a~~I~ 159 (308)
T PRK09545 81 EMEAFLEKPVSKLPEN-KQVTIAQLPDVKPLLMKSAHHDEDEDDHDHAAEKHDEDHHHGDYNMHLWLSPEIARATAVAIH 159 (308)
T ss_pred CHHHHHHHHHHHCCCC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 5677899999736657-806998227854233345456555555554445567655569999714479999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHH
Q ss_conf 99864318889999998998630145533789988630784473699826652145775297288722688640007899
Q gi|254780537|r 142 KALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSM 221 (294)
Q Consensus 142 ~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~ 221 (294)
++|+++||+|+++|++|+++|.++|++|+.++++.++ |.++|.|+++|+||+||+++|||+++++.+.+++.+|||++
T Consensus 160 ~~L~~~dP~~~~~y~~N~~~~~~~L~~ld~~~~~~la--~~~~r~~v~~HdAf~Yfa~~ygL~~~~~~~~~~e~~Ps~~~ 237 (308)
T PRK09545 160 DKLVELMPQSKAKLDANLKDFEAQLAATDKQIGNQLA--PVKGKGYFVFHDAYGYFEKHYGLTPLGHFTVNPEIQPGAQR 237 (308)
T ss_pred HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCHHH
T ss_conf 9999868451799999999999999999999999725--77788699977207999998699387887128776789999
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHC
Q ss_conf 9999976201697189982789979999999982993444320123787778-86899999999999998620
Q gi|254780537|r 222 MRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDG-PAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 222 l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~-~~~~Y~~~m~~N~~~l~~aL 293 (294)
|+++++.||+++|+|||.|++++++.+++||+++|++++. +|+|+.... ..++|+++|+.+.++++.||
T Consensus 238 l~~l~~~ik~~~v~~If~Ep~~~~k~~~~ia~~~g~kv~~---lDpLg~~~~~~~~~Y~~~m~~~~~~~~~CL 307 (308)
T PRK09545 238 LHEIRTQLVEHKATCVFAEPQFRPAVIESVAKGTSVRMGT---LDPLGTNIKLGKTSYSNFLSQLANQYASCL 307 (308)
T ss_pred HHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCEEEE---ECCCCCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999998399799965999949999999865985999---678755688881179999999999999973
No 4
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=490.06 Aligned_cols=271 Identities=27% Similarity=0.459 Sum_probs=249.0
Q ss_pred CCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC-CCCC
Q ss_conf 588289997528999999851891489996268898012022712457760378999988761068999997423-5575
Q gi|254780537|r 21 TQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLK-KGTK 99 (294)
Q Consensus 21 ~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~-~~~~ 99 (294)
++|++||||++|++++|++||||.++|++|+|+|.|||+|+|+|+|+++|++|||||+||.+||+|+.+++.+.. ++..
T Consensus 1 sgki~Vv~S~~p~~~lv~~I~Gd~v~V~~lv~~g~dPH~yep~p~d~~~l~~Adli~~nG~~lE~~l~~~~~~~~~~~~~ 80 (282)
T cd01017 1 SGKLKVVTTFYPLYEFTKAIGGDKADVKLIIPAGTEPHDFEPSPKDIARIADADVFVYNGLGMETWAEKVLKSLQNKKLK 80 (282)
T ss_pred CCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCCCCE
T ss_conf 99828999888999999998199448998159897963675899999999669999991878368999999853689977
Q ss_pred CCCCCCCCCHHHHH--------HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 21112374202221--------0012334630111221356789999999998643188899999989986301455337
Q gi|254780537|r 100 IITVTDGINPIGVS--------EDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSIL 171 (294)
Q Consensus 100 ~i~~~~~i~~~~~~--------~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~ 171 (294)
++++++++..+... +++|+|++.|||+||||.|++.++++|+++|+++||+|+++|++|+++|.++|++|++
T Consensus 81 vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~ 160 (282)
T cd01017 81 VVEASKGIKLLKAGGAEHDHDHSHSHHHGDYDPHVWLSPVLAIQQVENIKDALIKLDPDNKEYYEKNAAAYAKKLEALDQ 160 (282)
T ss_pred EEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99877895235567765555555445579999825578155999999999999986844179999999999999999999
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 89988630784473699826652145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r 172 PLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV 251 (294)
Q Consensus 172 ~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i 251 (294)
+++..++.+ ++|.|+++|++|+||+++|||++.++.+++++.+|||++|+++++.||+++|+|||+|++++++.+++|
T Consensus 161 ~~~~~l~~~--~~~~~v~~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~i 238 (282)
T cd01017 161 EYRAKLAKA--KGKTFVTQHAAFGYLARRYGLKQIAIVGVSPEVEPSPKQLAELVEFVKKSDVKYIFFEENASSKIAETL 238 (282)
T ss_pred HHHHHHHCC--CCCCEEEECCHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf 999987443--678568735337899986698486543348888999999999999999859989998189990999999
Q ss_pred HHHHCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHC
Q ss_conf 998299344432012378777-886899999999999998620
Q gi|254780537|r 252 AYETNASYGGVLYVDSLSKPD-GPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 252 a~e~~~~~~~~~~~d~l~~~~-~~~~~Y~~~m~~N~~~l~~aL 293 (294)
++++|++++.+.++++++.+. ..+.||++||++|+++|++||
T Consensus 239 a~e~g~~v~~l~pl~~~~~~~~~~~~~Y~~~m~~N~~~i~~aL 281 (282)
T cd01017 239 AKETGAKLLVLNPLETLTKEEIDDGKDYFSLMKENLETLKRAL 281 (282)
T ss_pred HHHHCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9981996785447666652348873669999999999999970
No 5
>cd01019 ZnuA Zinc binding protein ZnuA. These proteins have been shown to function as initial receptors in the ABC uptake of Zn2+. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a single helix and bind their specific ligands in the cleft between these domains. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=486.92 Aligned_cols=267 Identities=24% Similarity=0.371 Sum_probs=236.5
Q ss_pred CCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf 58828999752899999985189148999626889801202271245776037899998876106899999742355752
Q gi|254780537|r 21 TQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKI 100 (294)
Q Consensus 21 ~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~ 100 (294)
+.|++||||++|+++||++|+||+++|++|+|+|+|||+|||+|+|+++|++||||||||.+||+|+.+++.+..+ .++
T Consensus 1 aak~~Vvts~~pl~~i~~~I~Gd~v~V~~L~p~g~dpH~yep~p~d~~~l~~Adliv~~G~~lE~wl~k~~~~~~~-~~~ 79 (286)
T cd01019 1 AAEASVLTSIKPLGFIAAAIMGGVGEVEVLVPPGASPHDYELRPSDARKLQEADLVVWIGPDLEAFLDKVLQGRKK-GKV 79 (286)
T ss_pred CCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCC-CCE
T ss_conf 9998799987799999999828953799805999897367689999999966999999699724689999974778-883
Q ss_pred CCCCCCCCH--HH----------------HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 111237420--22----------------210012334630111221356789999999998643188899999989986
Q gi|254780537|r 101 ITVTDGINP--IG----------------VSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREY 162 (294)
Q Consensus 101 i~~~~~i~~--~~----------------~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~ 162 (294)
+.++++... .. ..+++|+|++.|||+||||.|++.++++|+++|+++||+|+++|++|+++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~DPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~ 159 (286)
T cd01019 80 LTLAKLIDLKTLEDGASHGDHEHDHEHAHGEHDGHEEGGLDPHLWLSPENAAEVAQAVAEKLSALDPDNAATYAANLEAF 159 (286)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf 78533556554334443455455555555654445568999816348477999999999999886822099999999999
Q ss_pred HCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 30145533789988630784473699826652145775297288722688640007899999997620169718998278
Q gi|254780537|r 163 SEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSEST 242 (294)
Q Consensus 163 ~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~ 242 (294)
.++|++|+.+++.+++.+ ++|.|+++|++|+||+++|||+++++.+.+++.+|||++|+++++.||+++|+|||+|++
T Consensus 160 ~~~L~~l~~~~~~~l~~~--~~~~~v~~H~af~Yfa~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~ 237 (286)
T cd01019 160 NARLAELDATIKERLAPV--KTKPFFVFHDAYGYFEKRYGLTQAGVFTIDPEIDPGAKRLAKIRKEIKEKGATCVFAEPQ 237 (286)
T ss_pred HHHHHHHHHHHHHHHCCC--CCCEEEEECCCHHHHHHHCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 999999999999974455--652289856636899986698386787224677899999999999999839988998289
Q ss_pred CCHHHHHHHHHHHCCCEEEEEECCCCCCCC-CCCCCHHHHHHHHHHHHHHHC
Q ss_conf 997999999998299344432012378777-886899999999999998620
Q gi|254780537|r 243 NSDQPAKQVAYETNASYGGVLYVDSLSKPD-GPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 243 ~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~-~~~~~Y~~~m~~N~~~l~~aL 293 (294)
++++.+++||+++|++++. +|+|+... ..+++|++||+.|+++|++||
T Consensus 238 ~~~k~a~~ia~e~g~~v~~---ld~l~~~~~~~~~~Y~~~m~~n~~~i~~aL 286 (286)
T cd01019 238 FHPKIAETLAEGTGAKVGE---LDPLGGLIELGKNSYVNFLRNLADSLASCL 286 (286)
T ss_pred CCHHHHHHHHHHCCCCEEE---ECCCCCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 8939999999971993899---637767788874069999999999999769
No 6
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=100.00 E-value=0 Score=473.63 Aligned_cols=270 Identities=37% Similarity=0.578 Sum_probs=258.1
Q ss_pred CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC-CCC
Q ss_conf 8828999752899999985189148999626889801202271245776037899998876106899999742355-752
Q gi|254780537|r 22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKG-TKI 100 (294)
Q Consensus 22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~-~~~ 100 (294)
++++||||++|+++++++|+||+++|.+|+|+|.|||+|||+|+|++++++||+|||||.+||+|+.+++.+..+. ..+
T Consensus 31 ~~~~Vvtt~~~~~d~~~~I~gd~~~V~~iv~~g~dpH~yepsp~di~~i~~ADliv~nG~~le~w~~k~~~~~~~~~~~~ 110 (303)
T COG0803 31 AKLKVVTTFPPIADVVKNIAGDKVDVVSLVPPGADPHSYEPTPSDIAKLRKADLIVYNGLGLEPWLEKLLESADKKKVLV 110 (303)
T ss_pred CCCEEEEECHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 78769997667999999970886028984289999706889989999987499999848865778999998467877516
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 11123742022210012334630111221356789999999998643188899999989986301455337899886307
Q gi|254780537|r 101 ITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKV 180 (294)
Q Consensus 101 i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~ 180 (294)
+.+++++.++...++. .++..|||+|+||.|++.++++|+++|+++||+|++.|++|+++|.++|++|+.+++.+++.+
T Consensus 111 i~~s~~i~~~~~~~~~-~~g~~dpH~Wldp~na~~~v~~I~~~L~~~dP~~~~~y~~N~~~y~~kL~~l~~~~~~~~~~~ 189 (303)
T COG0803 111 IEVSDGIELLPLPGEE-EEGVNDPHVWLDPKNAKIYAENIADALVELDPENKETYEKNAEAYLKKLNKLDEEAKAKLSKI 189 (303)
T ss_pred EECCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8714770345678744-468999982048999999999999999886941389999999999999999999999998447
Q ss_pred CCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 84473699826652145775297288722688640007899999997620169718998278997999999998299344
Q gi|254780537|r 181 DPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG 260 (294)
Q Consensus 181 p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~ 260 (294)
|. +|.|||+|++|+||+++||+++.++.+.+++.||||+++++++++||++++++||.|.+.+++.+++|++++|+++.
T Consensus 190 ~~-~r~~vt~h~af~Y~~~~~g~~~~~i~~~~~~~e~s~~~l~~l~~~ik~~~i~~If~e~~~~~~~~~~la~e~g~~~~ 268 (303)
T COG0803 190 PA-QRDVVTSHGAFGYLARDYGLKQVAIAGISPEAEPSPKDLAKLVDLIKKKNIKAIFVESNVSSKSAETLAKETGVKIL 268 (303)
T ss_pred CC-CCEEEEECCCHHHHHHHCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 64-66499863720654510598512203658556999999999999998569978998188882799999998598602
Q ss_pred EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 432012378777886899999999999998620
Q gi|254780537|r 261 GVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 261 ~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
.++++|+++.++.++++|+++|+.|+++|.++|
T Consensus 269 ~~~~~d~~~~~~~~~~~y~~~~~~n~~~i~~~l 301 (303)
T COG0803 269 GLLYLDSLGDKDSKGDTYISMMKANLDTIVEGL 301 (303)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 100223445678764528999999999999863
No 7
>pfam01297 SBP_bac_9 Periplasmic solute binding protein family. This family includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum.
Probab=100.00 E-value=0 Score=457.75 Aligned_cols=263 Identities=31% Similarity=0.513 Sum_probs=244.7
Q ss_pred EEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99975289999998518914899962688980120227124577603789999887610689999974235575211123
Q gi|254780537|r 26 VLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTD 105 (294)
Q Consensus 26 Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~ 105 (294)
||||++||+++|++|+||+++|++|+|+|.|||+|+|+|+|+++|++||+||+||.+||+|+.+++.....+.+++.+++
T Consensus 1 Vv~t~~pl~~iv~~i~gd~~~V~~l~~~g~dpH~y~~~p~d~~~l~~ADlii~~G~~~E~~l~~~~~~~~~~~~~v~~~~ 80 (272)
T pfam01297 1 VVASIPPLADLVKAIGGDKVEVTSLVPPGADPHTYEPTPSDIKKLAKADLVVYNGAGLEPWLDKLLASLANKVKVVDLSE 80 (272)
T ss_pred CEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 98965799999999808934899806999796577689999999956999999298716789999985689984898357
Q ss_pred CCCHHHHH--------HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 74202221--------0012334630111221356789999999998643188899999989986301455337899886
Q gi|254780537|r 106 GINPIGVS--------EDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRI 177 (294)
Q Consensus 106 ~i~~~~~~--------~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~ 177 (294)
++...... +++++|++.|||+|+||.|++.++++|++.|+++||+++++|++|+++|.++|++++.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l 160 (272)
T pfam01297 81 GIELLDAPGHEHDHDEHDHDDHGHGDPHIWLDPKNAKAMAEAIADALSELDPENAATYEKNAAAFLKKLDELDAEIKAKL 160 (272)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86555576545655555555678999806268277999999999999986854089999999999999999999999875
Q ss_pred HCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 30784473699826652145775297288722688640007899999997620169718998278997999999998299
Q gi|254780537|r 178 EKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNA 257 (294)
Q Consensus 178 ~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~ 257 (294)
+.++ ++.|+++|++|+||+++|||+++++.+.+++.+||++++.++++.+|+++|+|||+|++++++.++.|++++|+
T Consensus 161 ~~~~--~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~ 238 (272)
T pfam01297 161 APIP--GKRVITFHDAFGYFAKAYGLEQIAILGESPESEPSPADLAELIKLIKEHNVKVIFVEPQFSPKLAETLAEETGA 238 (272)
T ss_pred HCCC--CCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCC
T ss_conf 1347--64389855506999997799275403003567889999999999999849989998389990999999999699
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 344432012378777886899999999999998620
Q gi|254780537|r 258 SYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 258 ~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
++. .+++|+++.++ +.+|++||+.|+++|.+||
T Consensus 239 ~~~-~~~~d~l~~~~--~~~Y~~~m~~n~~~l~~al 271 (272)
T pfam01297 239 KVV-PLYLDPLGSEG--GDTYLELMRHNLDTLAEAL 271 (272)
T ss_pred CEE-EEECCCCCCCC--CCCHHHHHHHHHHHHHHHC
T ss_conf 768-87357888888--4779999999999999864
No 8
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=457.77 Aligned_cols=255 Identities=20% Similarity=0.326 Sum_probs=221.8
Q ss_pred CCCEEEEECHHHHHHHHHHCCCEEEEEEEE-CCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf 882899975289999998518914899962-6889801202271245776037899998876106899999742355752
Q gi|254780537|r 22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLV-EAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKI 100 (294)
Q Consensus 22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li-~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~ 100 (294)
+|++||||++||+|+|++||||+++|++|+ |||+|||+|||+|+|+++|++|||||+||.+||+|+.+++.+... . .
T Consensus 1 gkl~Vvat~~~l~dl~~~I~Gd~v~V~~li~~p~~dPH~yep~p~d~~~l~~Adlvv~nG~~lE~wl~k~~~~~~~-~-~ 78 (264)
T cd01020 1 GKINVVASTNFWGSVAEAVGGDHVEVTSIITNPDVDPHDFEPTPTDAAKVSTADIVVYNGGGYDPWMTKLLADTKD-V-I 78 (264)
T ss_pred CCCEEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCC-C-E
T ss_conf 9737999771999999998288169999447999896568799999999962989999588816899999852899-6-6
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf 11123742022210012334630111221356789999999998643188899999989986301455337899886307
Q gi|254780537|r 101 ITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKV 180 (294)
Q Consensus 101 i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~ 180 (294)
+...+ ...++.|++.|||+||||.|++.++++|++.|+++||+|+++|++|+++|.++|++|+.++++.++.
T Consensus 79 ~~~~~-------~~~~~~~~~~dPHiWldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~L~~~~~~~~~~- 150 (264)
T cd01020 79 VIAAD-------LDGHDDKEGDNPHLWYDPETMSKVANALADALVKADPDNKKYYQANAKKFVASLKPLAAKIAELSAK- 150 (264)
T ss_pred EEECC-------CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 88336-------6666677999989377999999999999999998690217999999999999999999999985145-
Q ss_pred CCCCCEEEEECCCCHHHHHHCCCEEEEEC----CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH---HH
Q ss_conf 84473699826652145775297288722----688640007899999997620169718998278997999999---99
Q gi|254780537|r 181 DPEKRWFVTSEGCLVYLAEDFGFKSLYLW----PINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV---AY 253 (294)
Q Consensus 181 p~~~~~~v~~H~af~Y~~~~yGl~~~~~~----~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i---a~ 253 (294)
.+++.|+++|++|+||+++|||++.+.. ...+|.||||++|+++++.||+++|++||+|++++++.++.| |+
T Consensus 151 -~~~~~~v~~H~af~Yf~~~yGl~~~~~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~q~~~~~a~~i~~~a~ 229 (264)
T cd01020 151 -YKGAPVAATEPVFDYLLDALGMKERTPKGYTATTESETEPSPADIAAFQNAIKNRQIDALIVNPQQASSATTNITGLAK 229 (264)
T ss_pred -CCCCEEEEECCCHHHHHHHCCCEEECCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHH
T ss_conf -7898699965417999997799450442034123788999999999999999986999999828988089999999998
Q ss_pred HHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8299344432012378777886899999999999998620
Q gi|254780537|r 254 ETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 254 e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
++++++.. +++..+.+.||++||++|+++|.+||
T Consensus 230 ~~~v~v~~------l~e~~~~~~tY~~~M~~Nl~~i~~aL 263 (264)
T cd01020 230 RSGVPVVE------VTETMPNGTTYLTWMLKQVDQLEKAL 263 (264)
T ss_pred HCCCEEEE------CCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 55956984------25678999989999999999999973
No 9
>cd01018 ZntC Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=100.00 E-value=0 Score=449.17 Aligned_cols=254 Identities=25% Similarity=0.383 Sum_probs=226.9
Q ss_pred CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCC-HHHHHHHHHCCCCCCC
Q ss_conf 882899975289999998518914899962688980120227124577603789999887610-6899999742355752
Q gi|254780537|r 22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLE-ETYMKYFTNLKKGTKI 100 (294)
Q Consensus 22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E-~~~~~~~~~~~~~~~~ 100 (294)
+||+||||++|+++||++|+||+++|++|+|+|.|||+|+|+|+|+++|++||||||||.+|| +|+.++.. ..++.++
T Consensus 1 dkp~Vvtsi~pl~~~v~~I~gd~v~V~~Lvp~g~dPH~ye~~psd~~~l~~ADlvv~~G~~lE~~~~~~l~~-~~~~~~v 79 (266)
T cd01018 1 DKPTVAVSIEPQKYFVEKIAGDTVDVVVLVPPGSNPHTYEPKPQQMKKLSEADLYFRIGLGFEEVWLERFRS-NNPKMQV 79 (266)
T ss_pred CCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHH-CCCCCEE
T ss_conf 998899977799999999839934899806999796468699999999966989999587345889999996-0899828
Q ss_pred CCCCCCCCHHHHHH---------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 11123742022210---------012334630111221356789999999998643188899999989986301455337
Q gi|254780537|r 101 ITVTDGINPIGVSE---------DTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSIL 171 (294)
Q Consensus 101 i~~~~~i~~~~~~~---------~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~ 171 (294)
+++++++..+...+ ++++|+++|||+||||.|++.++++|+++|+++||+|+++|++|+++|.++|++|+.
T Consensus 80 v~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~DPH~Wldp~~~~~~a~~Ia~~L~~ldP~~~~~y~~N~~~~~~~L~~L~~ 159 (266)
T cd01018 80 VNMSKGITLIPMADHHHHHHGEHEHHHHGNYDPHIWLSPANAKIMAENIYEALAELDPQNATYYQANLDALLAELDALDS 159 (266)
T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98678951044566445556654555568999846578676999999999999886935089999999999999999999
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 89988630784473699826652145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r 172 PLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV 251 (294)
Q Consensus 172 ~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i 251 (294)
+++++++.+ .+|.|+++|++|+||+++|||+++++. .++.||||++|+++++.||+++|+|||+|++++++.+++|
T Consensus 160 ~~~~~l~~~--~~~~~v~~Hdaf~Yf~~~ygl~~~~i~--~~~~eps~~~l~~l~~~ik~~~v~~If~E~~~~~k~~~~i 235 (266)
T cd01018 160 EIRTILSKL--KQRAFMVYHPAWGYFARDYGLTQIPIE--EEGKEPSPADLKRLIDLAKEKGVRVVFVQPQFSTKSAEAI 235 (266)
T ss_pred HHHHHHCCC--CCCEEEEECCCHHHHHHHCCCEEEECC--CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHH
T ss_conf 999973776--787389965447999986798798605--8888989999999999999839989997089990999999
Q ss_pred HHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 99829934443201237877788689999999999999
Q gi|254780537|r 252 AYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKI 289 (294)
Q Consensus 252 a~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l 289 (294)
|+++|++++. +|+|+. +|.+.|+.+.+.+
T Consensus 236 a~etg~kv~~---ldpL~~------~~~~~~~~~~~~~ 264 (266)
T cd01018 236 AREIGAKVVT---IDPLAA------DWEENLLKVADAF 264 (266)
T ss_pred HHHHCCCEEE---ECCCCC------CHHHHHHHHHHHH
T ss_conf 9970993799---678640------2799999999874
No 10
>COG4531 ZnuA ABC-type Zn2+ transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=100.00 E-value=0 Score=389.80 Aligned_cols=287 Identities=21% Similarity=0.344 Sum_probs=247.8
Q ss_pred CHHHHHHHHHHHHH-CCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEE
Q ss_conf 92699999999986-04643358828999752899999985189148999626889801202271245776037899998
Q gi|254780537|r 1 MLRYFICLLFSYIP-MSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCN 79 (294)
Q Consensus 1 M~r~~~~l~~~~~~-~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~ 79 (294)
|+|+++.+..++.+ +.++.......||||+.|+++|+..|+....+...|+|+|.+||+|.+.|||+++|++||||||.
T Consensus 3 ~~~~~~l~~A~~A~~~~~~~a~A~~~Vv~SIKPl~~iasaI~dGVg~p~vlvp~gASpHdYsLrPSDv~rlq~Adlv~Wv 82 (318)
T COG4531 3 LHKKTLLLSALFALLLGSAPAAAAAAVVTSIKPLGFIASAIADGVGEPEVLLPGGASPHDYSLRPSDVKRLQSADLVVWV 82 (318)
T ss_pred CHHHHHHHHHHHHHHHCCCHHCCCCCCEEEECCHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCHHHHHHHHCCCEEEEE
T ss_conf 05779999999999844530004632146504179999999826899736427999955335783578886318789997
Q ss_pred CCCCCHHHHHHHHHCCCCCCCCCCCCC--CCHHHH-----------------------HHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 876106899999742355752111237--420222-----------------------1001233463011122135678
Q gi|254780537|r 80 GLHLEETYMKYFTNLKKGTKIITVTDG--INPIGV-----------------------SEDTSVDSEPNPHAWMSLTNAM 134 (294)
Q Consensus 80 G~~~E~~~~~~~~~~~~~~~~i~~~~~--i~~~~~-----------------------~~~~~~~~~~dpH~Wldp~~~~ 134 (294)
|.++|.|+.|.+... ...++|.+++. +.++.. +++++|+|++|+|+||||.|++
T Consensus 83 Gp~lEaFL~Kpl~~l-~~~kvv~l~d~~~v~~L~~r~~hd~~~e~~h~hdH~~~dh~~d~dH~H~G~~d~H~Wl~P~~ak 161 (318)
T COG4531 83 GPDLEAFLDKPLSGL-PGAKVVTLADLPGVKPLLFREAHDHEEEHDHGHDHAGADHKGDHDHHHEGEYDMHLWLSPAIAK 161 (318)
T ss_pred CCCHHHHHHHHHHCC-CCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHH
T ss_conf 866787763122136-6772786231478743222222564211355434567655675445687875730132606789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCC
Q ss_conf 99999999986431888999999899863014553378998863078447369982665214577529728872268864
Q gi|254780537|r 135 IYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSD 214 (294)
Q Consensus 135 ~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~ 214 (294)
.+|..|++.|.++||+|++.|++|+++|..+|.+++..+.++++ |.+++.|+++|+||+||.++||++..+...++|+
T Consensus 162 ~~A~~i~~~L~e~dp~~~a~y~aNlk~f~~~La~~d~~i~~~L~--pvk~Kpf~VFHDAY~YFE~~ygl~~~G~fTVsPe 239 (318)
T COG4531 162 AVAAAIAKKLAELDPQNAAKYDANLKDFEAQLAALDKKVGEELA--PVKGKPFFVFHDAYGYFENAYGLKPLGHFTVSPE 239 (318)
T ss_pred HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCEEEEECHHHHHHHHHCCCCCCEEEECCC
T ss_conf 99999999998649455899998899999999988899998712--4578975898424888887407664652776734
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCC-CCCCHHHHHHHHHHHHHHHC
Q ss_conf 00078999999976201697189982789979999999982993444320123787778-86899999999999998620
Q gi|254780537|r 215 SERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDG-PAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 215 ~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~-~~~~Y~~~m~~N~~~l~~aL 293 (294)
..|++++|.+++++|++++..|||.|||+.+++++++++.|.++.++ +|++|.... ..++|..+|++-.+..+.||
T Consensus 240 v~PGA~rl~~Ir~~l~e~~a~CvFaEPQF~Pkvve~v~~GT~vr~g~---LDPlg~~i~lg~~sY~~fl~~lA~sy~~CL 316 (318)
T COG4531 240 VQPGAKRLAEIRTQLKEQKATCVFAEPQFRPKVVETVAEGTSVRSGT---LDPLGTNIKLGKDSYFNFLSNLANSYASCL 316 (318)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHCCCCCCEEE---ECCCCCCCEECCCHHHHHHHHHHHHHHHHH
T ss_conf 47437899999999997279677218987618999985477543142---066766200384069999999999999985
No 11
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=100.00 E-value=0 Score=368.30 Aligned_cols=197 Identities=23% Similarity=0.306 Sum_probs=173.2
Q ss_pred CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf 88289997528999999851891489996268898012022712457760378999988761068999997423557521
Q gi|254780537|r 22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKII 101 (294)
Q Consensus 22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i 101 (294)
.+++||||++|+++||++||||+++|++|+|+|.|||+|||+|+|+++|++|||||+||.+||+|+.+++....... +.
T Consensus 1 a~l~Vvts~~pl~~iv~~I~Gd~v~V~~Lvp~g~dPH~yep~p~d~~~l~~Adlv~~~G~~lE~~~~k~~~~~~~~~-~~ 79 (203)
T cd01145 1 AALNVVVTFPDLKDLVREVAGDAVIVSALTPPGVDPHQYQLKPSDIAKMRKADLVVTSGHELEGFEPKLAELSSNSK-VQ 79 (203)
T ss_pred CCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCC-CC
T ss_conf 99679998779999999983995389980698989756658999999983897999948870779999998656875-21
Q ss_pred CCCC------CCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 1123------7420222100123346301112213567899999999986431888999999899863014553378998
Q gi|254780537|r 102 TVTD------GINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKT 175 (294)
Q Consensus 102 ~~~~------~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~ 175 (294)
.... ........+++++|++.|||+||||.|++.++++|+++|+++||+|+++|++|+++|.++|++|+.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~ 159 (203)
T cd01145 80 PGIKILIEDSDTVGMVDRAMGDYHGKGNPHVWLDPNNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWER 159 (203)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 13101222345555456555556799998014799999999999999999868460899999999999999999999999
Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHH
Q ss_conf 8630784473699826652145775297288722688640007899
Q gi|254780537|r 176 RIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSM 221 (294)
Q Consensus 176 ~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~ 221 (294)
+++ +.++|.||++|+||+||+++|||+++++.+.+||.+|||++
T Consensus 160 ~~~--~~~~~~~v~~H~af~Yfa~~ygl~~~~~~~~~p~~~Ps~~h 203 (203)
T cd01145 160 QFE--GLKGIQVVAYHPSYQYLADWLGIEVVASLEPLPELPPTSSH 203 (203)
T ss_pred HHC--CCCCCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCCCC
T ss_conf 737--76799799978737999997799798987569998989998
No 12
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=98.36 E-value=2.7e-05 Score=56.08 Aligned_cols=132 Identities=23% Similarity=0.264 Sum_probs=98.8
Q ss_pred EEEEECHHHHHHHHHHCCCEEEEEEEECCCCC-------------CCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHH
Q ss_conf 89997528999999851891489996268898-------------01202271245776037899998876106899999
Q gi|254780537|r 25 VVLSSFSIIGDITQNIAKDLVTVTTLVEAGND-------------SHSYQVTSADAIKIQNADLILCNGLHLEETYMKYF 91 (294)
Q Consensus 25 ~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~d-------------pH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~ 91 (294)
.||++.+...+++..++++..-|......+.+ +|.++|++.++.++ +.|+||.++...+.+..++.
T Consensus 2 riv~~~~~~~e~l~~lg~~~~~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~i~~l-~PDlvi~~~~~~~~~~~~l~ 80 (148)
T cd00636 2 RVVALDPGATELLLALGGDDKPVGVADPSGYPPEAKALLEKVPDVGHGYEPNLEKIAAL-KPDLIIANGSGLEAWLDKLS 80 (148)
T ss_pred EEEEECCHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHCC-CCCEEEEECCCCHHHHHHHH
T ss_conf 19995750899999869998599995677887033200012562688889999999707-99899994666788999998
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 74235575211123742022210012334630111221356789999999998643188899999989986301455337
Q gi|254780537|r 92 TNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSIL 171 (294)
Q Consensus 92 ~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~ 171 (294)
. .. ..++.+..... .++.++...++.++..|. +++++++|.+.+++...
T Consensus 81 ~-~~--~~~~~~~~~~~-------------------~~~~~~~~~i~~lg~~~~---------~~~~a~~~~~~~~~~~~ 129 (148)
T cd00636 81 K-IA--IPVVVVDEASE-------------------LSLENIKESIRLIGKALG---------KEENAEELIAELDARLA 129 (148)
T ss_pred H-CC--CCEEEECCCCC-------------------CCHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHH
T ss_conf 6-39--97899578888-------------------999999999999999969---------81899999999999999
Q ss_pred HHHHHHHCCCCCCCEEE
Q ss_conf 89988630784473699
Q gi|254780537|r 172 PLKTRIEKVDPEKRWFV 188 (294)
Q Consensus 172 ~~~~~~~~~p~~~~~~v 188 (294)
.++.+.+.++..+..++
T Consensus 130 ~i~~~~~~~~~~~~~~~ 146 (148)
T cd00636 130 ELRAKLAKIPKKKVSLV 146 (148)
T ss_pred HHHHHHCCCCCCCEEEE
T ss_conf 99999638999967998
No 13
>pfam00148 Oxidored_nitro Nitrogenase component 1 type Oxidoreductase.
Probab=94.94 E-value=0.36 Score=28.25 Aligned_cols=151 Identities=10% Similarity=0.112 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH----HHHHHCCC
Q ss_conf 21356789999999998643188899999989986301455337899886307844736998266521----45775297
Q gi|254780537|r 128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV----YLAEDFGF 203 (294)
Q Consensus 128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~----Y~~~~yGl 203 (294)
+.+.+.......|++.|..-. ..+.+.+.-+++..++.+ ++..+. .+|.+|...+.+. -|..++|+
T Consensus 227 ~G~~~T~~~l~~i~~~~g~~~--~~~~i~~e~~~~~~~~~~----~~~~l~----gkrv~v~g~~~~~~~l~~~L~ElG~ 296 (398)
T pfam00148 227 IGIEATDRFLRALAELLGKEV--APEVIAEERGRLLDALAD----YHEYLA----GKRVAIYGDPDLAWGLARFLEELGM 296 (398)
T ss_pred CCHHHHHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHH----HHHHHC----CCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 777899999999999968998--778999999999999999----988737----9779998884579999999998799
Q ss_pred EEEEECCCCCCCCC--C-------------HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE--EECC
Q ss_conf 28872268864000--7-------------89999999762016971899827899799999999829934443--2012
Q gi|254780537|r 204 KSLYLWPINSDSER--S-------------PSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV--LYVD 266 (294)
Q Consensus 204 ~~~~~~~~~~~~ep--s-------------~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~--~~~d 266 (294)
+++.+.......+- . -.+..++.+.|++.+...||..+ .-+.+|++.+++.+.. ...|
T Consensus 297 ~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~d~~e~~~~i~~~~pDliig~s-----~~~~~a~~~~ip~i~~~~P~~~ 371 (398)
T pfam00148 297 EVVAVGTGTGHPDDYERLKALLDGTLRVIDDADLEELEELIKELKPDLLIGNS-----KERYLAKKLGIPLVRIGFPIHD 371 (398)
T ss_pred EEEEEEECCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEEECH-----HHHHHHHHCCCCEEEEECCEEE
T ss_conf 79999967898788998998547897799779999999998726999999891-----7899999739988982278056
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 3787778868999999999999986209
Q gi|254780537|r 267 SLSKPDGPAPTYLDLLRFSLTKIVDTLF 294 (294)
Q Consensus 267 ~l~~~~~~~~~Y~~~m~~N~~~l~~aL~ 294 (294)
-++....+--.|.+.+ +-++.|.++|.
T Consensus 372 ~~~~~~~p~~Gy~G~~-~l~~~i~n~l~ 398 (398)
T pfam00148 372 RNGLHRRPYVGYEGAL-NLADEIANALL 398 (398)
T ss_pred EECCCCCCEEEHHHHH-HHHHHHHHHHC
T ss_conf 8667788606087599-99999998629
No 14
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=93.76 E-value=0.63 Score=26.58 Aligned_cols=228 Identities=11% Similarity=0.099 Sum_probs=90.7
Q ss_pred CCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 82899975289999998518914899962688980120227124577603789999887610689999974235575211
Q gi|254780537|r 23 KKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIIT 102 (294)
Q Consensus 23 ~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~ 102 (294)
...||+..+...++.-.++.+-|=| -....+ -|...+.+. ..|...+|-+++++ +.+++.. +.
T Consensus 35 p~RIV~l~~~~~eil~~Lg~~~VGv---~~~~~~------~p~~~k~v~------~vG~~~~pnlE~I~-aLkPDLI-i~ 97 (289)
T TIGR03659 35 EERIVATSVAVTEILDKLDLDLVGV---PTSQKT------LPKRYKDVP------EVGNPMSPDMEKIK-SLKPTVV-LS 97 (289)
T ss_pred CCEEEECCCCHHHHHHHCCCCEEEE---ECCCCC------CHHHHHCCC------CCCCCCCCCHHHHH-HCCCCEE-EE
T ss_conf 9659986863799999869975999---778766------968871857------21887899999997-3699789-95
Q ss_pred CCCCCCHHHHHHCCCCCCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 12374202221001233463011122---135678999999999864318889999998998630145533789988630
Q gi|254780537|r 103 VTDGINPIGVSEDTSVDSEPNPHAWM---SLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEK 179 (294)
Q Consensus 103 ~~~~i~~~~~~~~~~~~~~~dpH~Wl---dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~ 179 (294)
+.......... - ..-+. |.+-+ +.+.+......+++.+.+- +. ++++.+++++-..+++++++.
T Consensus 98 -~~~~~~~~~~~-l-~~~~i-~v~~~~~~~~~~i~~~i~~lg~i~g~e--~~-------A~~li~~~~~~l~~i~~~~~~ 164 (289)
T TIGR03659 98 -VTTLEEDLGPK-F-KQLGV-EATFLNLTSVDGMKKSITELGEKYGRE--EQ-------AEKLVKEINEKEAEVKKKVKG 164 (289)
T ss_pred -CCCCHHHHHHH-H-HHCCC-EEEEECCCCHHHHHHHHHHHHHHHCCH--HH-------HHHHHHHHHHHHHHHHHHHCC
T ss_conf -57425878999-9-86097-599983789999999999999983877--88-------999999999999999987346
Q ss_pred CCCCCCEEEEE----------CCCC-HHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC-CCHHH
Q ss_conf 78447369982----------6652-145775297288722688640007899999997620169718998278-99799
Q gi|254780537|r 180 VDPEKRWFVTS----------EGCL-VYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSEST-NSDQP 247 (294)
Q Consensus 180 ~p~~~~~~v~~----------H~af-~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~-~~~~~ 247 (294)
.. +.+.++.. ..+| +-+.+..|.+.+.-.....-...|. +.+-+.+..+||.-.. .+...
T Consensus 165 ~~-~~~v~~~~~~~~~~~~~~~~s~~g~il~~~G~~Nv~~~~~~~~~~~s~-------E~l~~~nPDvI~~~~~~~~~~~ 236 (289)
T TIGR03659 165 KK-KPKVLILMGVPGSYLVATENSYIGDLVKLAGGENVYKGNKQEYLSSNT-------EYLLKANPDIILRAAHGMPDEV 236 (289)
T ss_pred CC-CCEEEEEEECCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCH-------HHHHHCCCCEEEEECCCCCHHH
T ss_conf 78-974999993499538845996467899981674202256887554489-------9997609989999557884566
Q ss_pred HHHHHHHH----------CCCEEEEEECCC--CCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99999982----------993444320123--787778868999999999999986209
Q gi|254780537|r 248 AKQVAYET----------NASYGGVLYVDS--LSKPDGPAPTYLDLLRFSLTKIVDTLF 294 (294)
Q Consensus 248 ~~~ia~e~----------~~~~~~~~~~d~--l~~~~~~~~~Y~~~m~~N~~~l~~aL~ 294 (294)
.+...++. -++-..+.++|+ +... ++..+.+. ++.|.++||
T Consensus 237 ~~~~~~~~~~np~w~~l~AVKn~~Vy~ld~~~~~~~--~~~~~~~~----l~~l~k~ly 289 (289)
T TIGR03659 237 KKMFDEEFKTNDIWKHFEAVKNNRVYDLDEELFGMT--ANLKVAEA----LDELKKMLY 289 (289)
T ss_pred HHHHHHHHHCCCCCCCCCHHCCCCEEEECHHHHCCC--CCHHHHHH----HHHHHHHHC
T ss_conf 888999986295121698200894799787880779--75779999----999999749
No 15
>TIGR02467 CbiE precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; InterPro: IPR012818 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CbiE subunit of precorrin-6Y C5,15-methyltransferase (2.1.1.132 from EC) from the anaerobic pathway, a bifunctional enzyme that catalyses two methylations (at C-5 and C-15) in precorrin-6Y, as well as the decarboxylation of the acetate side chain located in ring C, in order to generate precorrin-8X. In the anaerobic pathway, two enzymes are required to produce precorrin-8X: CbiE and CbiT, which can be fused as CbiET (sometimes called CobL) . In the aerobic pathway, the bifunctional enzyme is CobL .; GO: 0008276 protein methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=89.29 E-value=1.9 Score=23.34 Aligned_cols=92 Identities=10% Similarity=0.056 Sum_probs=68.2
Q ss_pred CCCCEEEEECCCCHHHHHHCCCEEE-EECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC-CCCHH-HHHHHHHHHCCC
Q ss_conf 4473699826652145775297288-72268864000789999999762016971899827-89979-999999982993
Q gi|254780537|r 182 PEKRWFVTSEGCLVYLAEDFGFKSL-YLWPINSDSERSPSMMRHAINQMRSHKIKFIFSES-TNSDQ-PAKQVAYETNAS 258 (294)
Q Consensus 182 ~~~~~~v~~H~af~Y~~~~yGl~~~-~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~-~~~~~-~~~~ia~e~~~~ 258 (294)
..+-.++..=.++||++.+.|+.-. +....-|+.+....+.+...+.++.+..-.+++++ ..+++ .++.| .+.|..
T Consensus 93 ~~~~~~iPg~SS~Q~A~ARlg~~w~d~~~~S~HGR~~~~~~~~~~~~~~~~~r~~~~lTd~~~~~P~~iA~~L-~~~g~~ 171 (210)
T TIGR02467 93 KEQLEIIPGISSVQLAFARLGLPWQDAVLISLHGRELDEEDKKLLLALLRGARKVAVLTDPARNGPAEIAREL-IELGLG 171 (210)
T ss_pred CCEEEECCCHHHHHHHHHHCCCCHHHEEEEEEEECCCCCHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH-HHCCCC
T ss_conf 3326871666789999997078811348878740488804568899985079879995287466979999999-974999
Q ss_pred EE-EEEECCCCCCCCCC
Q ss_conf 44-43201237877788
Q gi|254780537|r 259 YG-GVLYVDSLSKPDGP 274 (294)
Q Consensus 259 ~~-~~~~~d~l~~~~~~ 274 (294)
.. ++..++.||.+++.
T Consensus 172 ~~~~~~V~EnLg~~~E~ 188 (210)
T TIGR02467 172 GSYELTVGENLGYEDER 188 (210)
T ss_pred CCEEEEEEECCCCCCCE
T ss_conf 50478876005885633
No 16
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=87.87 E-value=2.3 Score=22.73 Aligned_cols=21 Identities=10% Similarity=0.031 Sum_probs=13.2
Q ss_pred CCEEEEECHHHHHHHHHHCCC
Q ss_conf 828999752899999985189
Q gi|254780537|r 23 KKVVLSSFSIIGDITQNIAKD 43 (294)
Q Consensus 23 ~~~Vv~s~~pl~~iv~~I~gd 43 (294)
+-.||+......+..-.++..
T Consensus 46 PqRVV~l~~~~~d~llaLg~p 66 (319)
T PRK10957 46 PARIVSTSVTLTGTLLAIDAP 66 (319)
T ss_pred CCEEEEECCCCHHHHHHCCCC
T ss_conf 967999548627889867996
No 17
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=87.35 E-value=2.5 Score=22.53 Aligned_cols=156 Identities=12% Similarity=0.162 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCC-C----H-HHH
Q ss_conf 213567899999999986431888999---999899863014553378998863078447369982665-2----1-457
Q gi|254780537|r 128 MSLTNAMIYIENIRKALTALDPSNAKK---YELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGC-L----V-YLA 198 (294)
Q Consensus 128 ldp~~~~~~a~~I~~~L~~~dP~~~~~---y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~a-f----~-Y~~ 198 (294)
.-..+..+....|++.+..-.|..... +.+....+...+.+.......+ -+ ..+|..| +-++ + . .++
T Consensus 246 iGi~~T~~fL~~i~~~~g~e~~~e~~~~e~~~~~~~~~~~~~~d~~~~~~~~--~l-~GKrvaI-~gd~~~~~~l~~fl~ 321 (430)
T cd01981 246 IGVVATARFLREIQELLGIQIIPELVNVEPYIDSQTRWVSQSARSSRSIDSQ--NL-TGKRAFV-FGDATHVAAATRILA 321 (430)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CC-CCCEEEE-ECCCHHHHHHHHHHH
T ss_conf 6789999999999999589862334557889988776555778876555654--03-7977999-878158999999999
Q ss_pred HHCCCEEEEECCCCCCC-C---CC----------HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 75297288722688640-0---07----------8999999976201697189982789979999999982993444320
Q gi|254780537|r 199 EDFGFKSLYLWPINSDS-E---RS----------PSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLY 264 (294)
Q Consensus 199 ~~yGl~~~~~~~~~~~~-e---ps----------~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~ 264 (294)
++.|++++..-...... + .. -.|..++.+.+++.++..+|. +.--+.+|++.|+|.+.+-+
T Consensus 322 ~ELGm~vv~~gt~~~~~~~~~~~~~~~~~~~~~i~~D~~el~~~i~~~~pDlliG-----~s~ek~ia~k~giPlirigf 396 (430)
T cd01981 322 REMGFRVVGAGTYCKEDAKWFREQATGYCDEALITDDHTEVGDMIARTEPELIFG-----TQMERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCEEEE-----CCCHHHHHHHHCCCEEEECC
T ss_conf 8569769970677664689999987436980899589999999986249999996-----64189999986969687448
Q ss_pred ---CCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf ---12378777886899999999999998620
Q gi|254780537|r 265 ---VDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 265 ---~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
.+..+....+--.|-+. .+-++.|.++|
T Consensus 397 Pi~~~~~~~~~~P~~GY~Ga-~~l~~~I~nal 427 (430)
T cd01981 397 PVHIQNFPLGYRPFLGYEGT-NVIADTVYNSL 427 (430)
T ss_pred CCEECCCCCCCCCCCCHHHH-HHHHHHHHHHH
T ss_conf 71131446678994202769-99999997763
No 18
>PRK10355 xylF D-xylose transporter subunit XylF; Provisional
Probab=85.04 E-value=3.3 Score=21.76 Aligned_cols=103 Identities=9% Similarity=0.052 Sum_probs=57.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHH---------HHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHH-
Q ss_conf 9269999999998604643358828999752899---------999985189148999626889801202271245776-
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIG---------DITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKI- 70 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~---------~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i- 70 (294)
||++++++++++.+.++++.+.+++|-+|++-+. .+.++.-.-.++|... .++.|+-. .-+|+..+
T Consensus 3 ~k~~~~~~~~~~~~~~~~a~a~~~~IGv~~~~~~~~~~~~~~~~~~~~Ake~G~~v~v~-dA~~D~~~---Qi~qIe~~I 78 (330)
T PRK10355 3 IKNILLTLCAALLLTSVAAHAKEVKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQ-SANGNEET---QMSQIENMI 78 (330)
T ss_pred HHHHHHHHHHHHHHHCCHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEE-CCCCCHHH---HHHHHHHHH
T ss_conf 68999999999998446112138679999068888689999999999999759989997-18999899---999999999
Q ss_pred -CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf -0378999988761068999997423557521112374
Q gi|254780537|r 71 -QNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGI 107 (294)
Q Consensus 71 -~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i 107 (294)
++.|.++.+-.+-+....-+.+....+.++|.....+
T Consensus 79 ~qgvdaIiv~p~D~~al~~~v~~A~~aGIPVI~~D~~i 116 (330)
T PRK10355 79 NRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAYDRMI 116 (330)
T ss_pred HCCCCEEEEECCCHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 85999999969987888999999998799499957877
No 19
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=82.69 E-value=4.1 Score=21.11 Aligned_cols=53 Identities=15% Similarity=0.156 Sum_probs=24.5
Q ss_pred CCCEEEEECHHHHHHHHHHCCCE-EEEEEEECCCCCCCCCCCCHHHHHHHCC----CCEEEE
Q ss_conf 88289997528999999851891-4899962688980120227124577603----789999
Q gi|254780537|r 22 QKKVVLSSFSIIGDITQNIAKDL-VTVTTLVEAGNDSHSYQVTSADAIKIQN----ADLILC 78 (294)
Q Consensus 22 ~~~~Vv~s~~pl~~iv~~I~gd~-v~V~~li~~g~dpH~ye~tp~d~~~i~~----Adliv~ 78 (294)
+...+|.++..++.--.+|+.-. .+|..+-.+-.. ..+|.+++..-+ .+++..
T Consensus 80 gdkVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~----~v~p~~v~~~L~~~~~~~~V~~ 137 (383)
T COG0075 80 GDKVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGE----AVDPEEVEEALDKDPDIKAVAV 137 (383)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCC----CCCHHHHHHHHHCCCCCCEEEE
T ss_conf 986999827807779999999829966998478888----7999999999852899508999
No 20
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=82.56 E-value=4.1 Score=21.08 Aligned_cols=18 Identities=6% Similarity=-0.101 Sum_probs=8.6
Q ss_pred CCCHHHHHHHHHHHCCCEEE
Q ss_conf 89979999999982993444
Q gi|254780537|r 242 TNSDQPAKQVAYETNASYGG 261 (294)
Q Consensus 242 ~~~~~~~~~ia~e~~~~~~~ 261 (294)
.++-..+++.|. |++++.
T Consensus 277 gfg~~~lEAma~--G~PVVa 294 (357)
T cd03795 277 AFGIVLLEAMAF--GKPVIS 294 (357)
T ss_pred CCCHHHHHHHHC--CCCEEE
T ss_conf 566679999987--998999
No 21
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=81.75 E-value=3.7 Score=21.40 Aligned_cols=74 Identities=11% Similarity=0.069 Sum_probs=52.2
Q ss_pred HHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 6301455337899886307844736998266521457752972887226886400078999999976201697189982
Q gi|254780537|r 162 YSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE 240 (294)
Q Consensus 162 ~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e 240 (294)
+--.|.+|.-.+ +..++|..=..+|+.|+.+..++++||+....+.- +.+-.+++=+++.+.++++++..|..-
T Consensus 98 ~dHCL~DLL~R~--~~GeL~~eI~~VISNH~dL~~lae~~~IPF~~iPv---~~~~K~e~E~~i~~~~~~~~~d~ivla 171 (285)
T PRK06027 98 EDHCLGDLLWRW--RSGELPVEIAAVISNHPDLRSLVESFGIPFHHVPV---TKETKAEAEAQLLELIDEYQPDLVVLA 171 (285)
T ss_pred CCCCHHHHHHHH--HCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEH
T ss_conf 453789999987--56985625779942857899999986998288268---766537799999999873497199763
No 22
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=81.37 E-value=3.1 Score=21.91 Aligned_cols=68 Identities=19% Similarity=0.124 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHHCCCCCC--CCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHH-----HHHHHCCC
Q ss_conf 92699999999986046433--588289997528999999851891489996268898012022712-----45776037
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASAT--TQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSA-----DAIKIQNA 73 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~--~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~-----d~~~i~~A 73 (294)
|||+|++++.++++++..+. .++..-.+--.|+ .+..+|+-..--| |||=|..-|. ..++--.+
T Consensus 1 mkk~~~~~~~llls~~a~Aa~~~eG~~Y~~L~~p~--------~~~~eV~EfFsy~-CpHCy~fEp~l~i~~~~~k~lp~ 71 (207)
T PRK10954 1 MKKIWLALAGMVLAFSASAAQFTDGKQYTTLDKPV--------AGAPQVLEFFSFY-CPHCYQFEEVLHVSDNVKKKLPE 71 (207)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCC--------CCCCCEEEEEEEC-CCCHHHCCHHCCCHHHHHHHCCC
T ss_conf 91599999999999772250354899755888888--------9997089999746-97255107001516999974899
Q ss_pred CEEE
Q ss_conf 8999
Q gi|254780537|r 74 DLIL 77 (294)
Q Consensus 74 dliv 77 (294)
|+-|
T Consensus 72 ~v~f 75 (207)
T PRK10954 72 GTKM 75 (207)
T ss_pred CCEE
T ss_conf 9789
No 23
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase; InterPro: IPR011880 Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA) . Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in Gram-positive prokaryotes . In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions ..
Probab=80.83 E-value=4.3 Score=20.92 Aligned_cols=93 Identities=12% Similarity=0.046 Sum_probs=49.1
Q ss_pred CCCEEEEECCCCHH-----------HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 47369982665214-----------5775297288722688640007899999997620169718998278997999999
Q gi|254780537|r 183 EKRWFVTSEGCLVY-----------LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV 251 (294)
Q Consensus 183 ~~~~~v~~H~af~Y-----------~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i 251 (294)
++|.=-..|.|||| =++++|..++++.|-..+. + +++|++-+.++|.+-|..-=.+++.+
T Consensus 115 GGr~g~~~H~AYGYGLFTGGLG~HyGaEkLG~~~vPiSGG~Tek-----Q----~qLI~Df~P~iI~~TPSY~L~~~e~l 185 (431)
T TIGR02155 115 GGRPGDLIHNAYGYGLFTGGLGAHYGAEKLGCTVVPISGGQTEK-----Q----VQLIQDFKPDIIMVTPSYMLNILEEL 185 (431)
T ss_pred CCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCCCHHH-----H----HHHHHCCCCCEEEECHHHHHHHHHHH
T ss_conf 78988757873054300032456423120660787137978056-----7----77643379888985778999999988
Q ss_pred HHHHCCCEE-EEEECCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 998299344-432012378777886899999999999998
Q gi|254780537|r 252 AYETNASYG-GVLYVDSLSKPDGPAPTYLDLLRFSLTKIV 290 (294)
Q Consensus 252 a~e~~~~~~-~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~ 290 (294)
.+.. +... .-+-.--+|.+. |-+-||.++++..
T Consensus 186 ~r~~-~dp~~~Sl~~gilGaEP-----W~~~mR~~~E~~~ 219 (431)
T TIGR02155 186 KRMG-IDPEQTSLKVGILGAEP-----WTNAMRKEIEARL 219 (431)
T ss_pred HHCC-CCHHHCCEEEEEECCCC-----CHHHHHHHHHHHH
T ss_conf 6406-88645636788723771-----0588999999873
No 24
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=80.71 E-value=4.8 Score=20.65 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=6.0
Q ss_pred HHHHHHHHCCCEEEEE
Q ss_conf 9999998518914899
Q gi|254780537|r 33 IGDITQNIAKDLVTVT 48 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~ 48 (294)
..++++.++....+|+
T Consensus 19 v~~la~~L~~~Gh~V~ 34 (392)
T cd03805 19 VVDAALALQSRGHEVT 34 (392)
T ss_pred HHHHHHHHHHCCCEEE
T ss_conf 9999999997699399
No 25
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=80.61 E-value=4.8 Score=20.63 Aligned_cols=73 Identities=8% Similarity=0.078 Sum_probs=51.7
Q ss_pred HCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 301455337899886307844736998266521457752972887226886400078999999976201697189982
Q gi|254780537|r 163 SEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE 240 (294)
Q Consensus 163 ~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e 240 (294)
--.|.+|.-.+ +..++|..=..+|+.|+.+..++++||+....+.- +.+-.+.+=+++.+.++++++..|+.-
T Consensus 104 ~HCL~DLL~R~--~~GeL~~eI~~VISNH~dL~~lae~~gIPF~hipv---~~~~k~~~e~~~~~~~~~~~~d~vvla 176 (289)
T PRK13010 104 DHCLNDLLYRW--RMGELDMDIVGIISNHPDLQPLAVQHDIPFHHLPV---TPDTKAQQEAQILDLIETSGAELVVLA 176 (289)
T ss_pred HHHHHHHHHHH--HCCCCCCEEEEEEECCHHHHHHHHHCCCCEEEECC---CCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 45099999998--74985860149997877789999977998398268---777526789999999871398899870
No 26
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=79.94 E-value=5 Score=20.49 Aligned_cols=72 Identities=17% Similarity=0.318 Sum_probs=35.1
Q ss_pred ECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHH--HH---HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 7528999999851891489996268898012022712--45---77603789999887610689999974235575211
Q gi|254780537|r 29 SFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSA--DA---IKIQNADLILCNGLHLEETYMKYFTNLKKGTKIIT 102 (294)
Q Consensus 29 s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~--d~---~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~ 102 (294)
+..-+..+++..+.+-+....--....||-.|==+-+ ++ ..-.++|++|.++ .+.|-=.+.++..- +.++++
T Consensus 18 ~l~El~~L~~t~g~~vv~~~~q~~~~~~~~~~~G~GKl~ei~~~~~~~~~~~vi~d~-~Lsp~Q~rnLe~~~-~~~V~D 94 (351)
T TIGR03156 18 SLEELAELARTAGAEVVGTVTQKRSRPDPATYIGKGKVEEIAELVEALEADLVIFNH-ELSPSQERNLEKAL-GCRVID 94 (351)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEECCCHHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHH-CCEEEE
T ss_conf 599999999978998999999944899742001501999999999855999999989-79999999999986-988971
No 27
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=79.19 E-value=5.3 Score=20.33 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=51.1
Q ss_pred HCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 30145533789988630784473699826652145775297288722688640007899999997620169718998
Q gi|254780537|r 163 SEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFS 239 (294)
Q Consensus 163 ~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~ 239 (294)
--.|.+|.- +.+..++|..=..+|+.|+.+..++++||+....+.- +.+-.+.+=+++.+.++++++..|..
T Consensus 101 ~HCL~DLL~--R~~~GeL~~eI~~VISNH~dL~~lae~~~IPF~~iPv---~~~~K~e~E~~~~~~~~~~~~d~ivl 172 (287)
T PRK13011 101 DHCLNDLLY--RWRIGELPMDIVGVVSNHPDLEPLAAWHGIPFHHFPI---TPDTKPQQEAQVLDVIEESGAELVVL 172 (287)
T ss_pred CCCHHHHHH--HHHCCCCCCEEEEEECCCHHHHHHHHHCCCCEEEECC---CCCCCHHHHHHHHHHHHHCCCCEEEH
T ss_conf 236999999--9764986844658734986789999976998288378---87763789999999987339739943
No 28
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=79.11 E-value=4.8 Score=20.61 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=9.8
Q ss_pred HHHHHHHHCCCEEEEEEEEC
Q ss_conf 99999985189148999626
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLVE 52 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~li~ 52 (294)
...+++.+.....+|+.+.+
T Consensus 20 ~~~La~~L~~~GheV~Vit~ 39 (374)
T cd03817 20 IRRLAEELEKRGHEVYVVAP 39 (374)
T ss_pred HHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999977998999972
No 29
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A; InterPro: IPR013485 This entry consists of archaeal proteins which are predicted to be functionally equivalent to MoaA (molybdenum cofactor biosynthesis protein A) from bacteria (see IPR013483 from INTERPRO).; GO: 0046872 metal ion binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=78.44 E-value=5.6 Score=20.18 Aligned_cols=66 Identities=21% Similarity=0.255 Sum_probs=33.7
Q ss_pred HHHHCCCEEEEECCCCCCCCCCHH-HHHHHHHHHCCCCCEEEEEECCCCH----HHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 577529728872268864000789-9999997620169718998278997----9999999982993444320123787
Q gi|254780537|r 197 LAEDFGFKSLYLWPINSDSERSPS-MMRHAINQMRSHKIKFIFSESTNSD----QPAKQVAYETNASYGGVLYVDSLSK 270 (294)
Q Consensus 197 ~~~~yGl~~~~~~~~~~~~eps~~-~l~~~~~~ik~~~v~~if~e~~~~~----~~~~~ia~e~~~~~~~~~~~d~l~~ 270 (294)
-+.+||..-+=+. |+||.-+ ||-+++..|++.+++-|= -..|. +.|+.| +++|..=+- ..+|+|..
T Consensus 57 ~a~~fGV~kvKlT----GGEPlLR~D~~~Ii~~~~~~~~~~vS--mTTNG~LL~~~A~~L-k~AGLdRVN-VSLdtld~ 127 (324)
T TIGR02668 57 VASEFGVRKVKLT----GGEPLLRKDLIEIIRRIKDYGIKDVS--MTTNGILLEKLAKKL-KEAGLDRVN-VSLDTLDP 127 (324)
T ss_pred HHHHCCCCEEEEC----CCCCCHHHHHHHHHHHHCCCCCEEEE--CCCCHHHHHHHHHHH-HHHCCCEEE-ECCCCCCH
T ss_conf 9987088327751----78743456699999861467503442--030314489899999-982856131-20267886
No 30
>pfam00121 TIM Triosephosphate isomerase.
Probab=77.11 E-value=6.1 Score=19.93 Aligned_cols=59 Identities=14% Similarity=0.227 Sum_probs=44.9
Q ss_pred CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC----------CCEEEEEECCCCHHHHHHHHH
Q ss_conf 7369982665214577529728872268864000789999999762016----------971899827899799999999
Q gi|254780537|r 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH----------KIKFIFSESTNSDQPAKQVAY 253 (294)
Q Consensus 184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~----------~v~~if~e~~~~~~~~~~ia~ 253 (294)
++.+++|.|.|. +.++..|++.++.++...||+. +++ |++....+++-++.+.+
T Consensus 157 ~~iiIAYEPvWA---------------IGtG~~as~~~i~~~~~~Ir~~l~~~~~~~~~~i~-iLYGGSVn~~N~~~i~~ 220 (243)
T pfam00121 157 KNLIIAYEPVWA---------------IGTGKVATPEQAQEVHAFIRKYLAELSKEVAEEVR-ILYGGSVNPDNAKELLA 220 (243)
T ss_pred CCEEEEECCHHH---------------CCCCCCCCHHHHHHHHHHHHHHHHHHCHHHCCCCC-EEEECCCCHHHHHHHHC
T ss_conf 563999678222---------------48999999999999999999999984542316642-89717689989999966
Q ss_pred HHCCC
Q ss_conf 82993
Q gi|254780537|r 254 ETNAS 258 (294)
Q Consensus 254 e~~~~ 258 (294)
..++.
T Consensus 221 ~~~vd 225 (243)
T pfam00121 221 QPDID 225 (243)
T ss_pred CCCCC
T ss_conf 88998
No 31
>PRK10576 iron-hydroxamate transporter substrate-binding subunit; Provisional
Probab=76.72 E-value=6.2 Score=19.86 Aligned_cols=259 Identities=7% Similarity=0.014 Sum_probs=103.7
Q ss_pred CHHHHHHHHHH-HHH---C-CCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEE-----------EECCCC-C-CCCCCC
Q ss_conf 92699999999-986---0-4643358828999752899999985189148999-----------626889-8-012022
Q gi|254780537|r 1 MLRYFICLLFS-YIP---M-SASATTQKKVVLSSFSIIGDITQNIAKDLVTVTT-----------LVEAGN-D-SHSYQV 62 (294)
Q Consensus 1 M~r~~~~l~~~-~~~---~-~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~-----------li~~g~-d-pH~ye~ 62 (294)
|+|.++..++| ..+ + ...+....+.||+-.--+..-+-.+|=.-|-|.- -+|+++ | .--+||
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~RVv~LdW~~aE~llaLGv~Pvgvad~~~Y~~Wv~~P~lp~~V~DVGtR~eP 84 (292)
T PRK10576 5 SRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGITPYGVADTHNYRLWVSEPPLPDSVIDVGLRTEP 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCCCEEECCCCCHHHCCCCCCCCCCCCCCCCCCC
T ss_conf 89999999987499761764223579998699944198999997799852443310022322688999876567688898
Q ss_pred CHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 71245776037899998876106899999742355752111237420222100123346301112213567899999999
Q gi|254780537|r 63 TSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRK 142 (294)
Q Consensus 63 tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~ 142 (294)
+-.-+..| +-|+|+.+. .+.+-.. .+.+.. +++... ...+.+| ...++.....|++
T Consensus 85 NLE~Ia~L-kPDLIi~s~-~~~~~~~-~Ls~IA---Pt~~~~-------------~~~~~~~-----~~~~~~~~~~la~ 140 (292)
T PRK10576 85 NLELLTEM-KPSFMVWSA-GYGPSPE-KLARIA---PGRGFN-------------FSDGKKP-----LAVARKSLTELAQ 140 (292)
T ss_pred CHHHHHHC-CCCEEEECC-CCCCHHH-HHHHHC---CEEEEE-------------CCCCCCH-----HHHHHHHHHHHHH
T ss_conf 99999746-998899467-6530489-987447---746861-------------4677877-----9999999999999
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHH
Q ss_conf 9864318889--99999899863014553378998863078447369982665214577529728872268864000789
Q gi|254780537|r 143 ALTALDPSNA--KKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPS 220 (294)
Q Consensus 143 ~L~~~dP~~~--~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~ 220 (294)
.+.+-+-..+ ..|++..+++.+++......--..+.-+..++..+.+.+.-|++..++.||+..- .+.....-.+.-
T Consensus 141 ~lgke~~A~~~la~~~~~la~~r~~l~~~~~~p~~~v~~~d~~~~riyg~nSl~~~vL~~LGL~naw-~~~~~~wG~~~i 219 (292)
T PRK10576 141 RLNLEAAAETHLAQYDDFIRSMKPRFVGRGARPLLMTTLIDPRHMLVFGPNSLFQEVLDEYGIPNAW-QGETNFWGSTAV 219 (292)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEECCCCHHHHHHHCCCCCCC-CCCCCCCCEEEC
T ss_conf 9699999999999999999999998632478976999996288699982895489999983998756-687665760115
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---C---CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 99999976201697189982789979999999982---9---9344432012378777886899999999999998620
Q gi|254780537|r 221 MMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYET---N---ASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 221 ~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~---~---~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
. +.+..+-.+..+++.++..+ ...+.+.+.. + ++-..+..++++ ..- ++-.+ ++.-.+.|.+||
T Consensus 220 ~---lE~La~~~d~~~l~~~~~~~-~~~~~l~~spLWq~Lp~Vk~grv~~vp~v-W~f---GG~~S-A~rfa~~l~~aL 289 (292)
T PRK10576 220 G---IDRLAAYKDADVLCFDHGNS-KDMQALMATPLWQAMPFVRAGRFQRVPAV-WFY---GATLS-AMHFVRILDNAL 289 (292)
T ss_pred C---HHHHCCCCCCEEEEEECCCH-HHHHHHHCCCHHHHCHHHHCCCEEECCCC-CCC---CCHHH-HHHHHHHHHHHH
T ss_conf 7---98962678976999947984-88887754924441804325955767875-554---58999-999999999986
No 32
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=76.07 E-value=5.7 Score=20.14 Aligned_cols=24 Identities=4% Similarity=0.033 Sum_probs=13.4
Q ss_pred HHHHHHHHCCCEEEEEEEECCCCC
Q ss_conf 999999851891489996268898
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLVEAGND 56 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~li~~g~d 56 (294)
+.++++.+..-..+|+.+.+....
T Consensus 20 ~~~la~~L~~~Gh~V~v~t~~~~~ 43 (364)
T cd03814 20 LQRLVEHLRARGHEVLVIAPGPFR 43 (364)
T ss_pred HHHHHHHHHHCCCEEEEEECCCCC
T ss_conf 999999999779989999789976
No 33
>TIGR01885 Orn_aminotrans ornithine--oxo-acid transaminase; InterPro: IPR010164 Ornithine aminotransferase catalyses the conversion of L-ornithine and a 2-oxo acid to L-glutamate 5-semialdehyde and an L-amino acid. This enzyme is found in low-GC bacteria, where it is responsible for the fourth step in arginine biosynthesis, and in the mitochondrial matrix of eukaryotes, where it controls L-ornithine levels in tissues. In human hereditary ornithine aminotransferase deficiency, the elevated levels of intraocular concentrations of ornithine are responsible for gyrate atrophy, which affects the CNS and peripheral nervous system ; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding.
Probab=75.38 E-value=4 Score=21.13 Aligned_cols=60 Identities=20% Similarity=0.409 Sum_probs=32.7
Q ss_pred HHHHHCC--CEEEEECCCCCCCCCCHHHHHH------HHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 4577529--7288722688640007899999------997620169718998278997999999998299
Q gi|254780537|r 196 YLAEDFG--FKSLYLWPINSDSERSPSMMRH------AINQMRSHKIKFIFSESTNSDQPAKQVAYETNA 257 (294)
Q Consensus 196 Y~~~~yG--l~~~~~~~~~~~~eps~~~l~~------~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~ 257 (294)
|+++=|| ++.+ .-+++|.|.+=.-++- -.+.|-+++.+.|+++.+|+.|+.-.|+..|.-
T Consensus 92 ~~t~LfgGk~~~v--L~mNTGaEAvEtA~KLAR~WgY~~K~ip~~kA~ii~~~GNFhGRTlgA~S~Std~ 159 (426)
T TIGR01885 92 YLTKLFGGKYEKV--LPMNTGAEAVETALKLARKWGYEVKGIPRNKAKIIAASGNFHGRTLGAVSASTDS 159 (426)
T ss_pred HHHHHCCCCCCEE--ECCCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 9997549951056--0456873479999999997441357855762389985388733035443202672
No 34
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, catalytic subunit; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain . The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme .; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process, 0009320 phosphoribosylaminoimidazole carboxylase complex.
Probab=74.57 E-value=5.6 Score=20.16 Aligned_cols=63 Identities=22% Similarity=0.244 Sum_probs=51.6
Q ss_pred HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC-EEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 57752972887226886400078999999976201697-1899827899799999999829934443
Q gi|254780537|r 197 LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKI-KFIFSESTNSDQPAKQVAYETNASYGGV 262 (294)
Q Consensus 197 ~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v-~~if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294)
++++||+..-.-.-. .+ -||..+.+..+..++.|+ ++|..--.-+..+-=.+|..|..|++++
T Consensus 20 ~L~~fgi~~e~~V~S-AH--RTP~~~~~ya~~a~~~G~P~ViIAgAGgaAHLPGmvAa~T~~PVIGV 83 (159)
T TIGR01162 20 ILEEFGIPYELRVVS-AH--RTPELMFEYAKEAEERGIPKVIIAGAGGAAHLPGMVAALTTLPVIGV 83 (159)
T ss_pred HHHHCCCCEEEEEEC-CC--CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCEEEC
T ss_conf 998559966789860-67--78088999999998678997998403511334010011478775503
No 35
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=74.20 E-value=4.6 Score=20.75 Aligned_cols=10 Identities=10% Similarity=0.228 Sum_probs=5.5
Q ss_pred CCCCEEEEEC
Q ss_conf 0378999988
Q gi|254780537|r 71 QNADLILCNG 80 (294)
Q Consensus 71 ~~Adliv~~G 80 (294)
.+.|+++.+.
T Consensus 82 ~~~Dvi~~~~ 91 (348)
T cd03820 82 NKPDVVISFL 91 (348)
T ss_pred CCCCEEEECC
T ss_conf 5999999989
No 36
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=73.89 E-value=7.3 Score=19.39 Aligned_cols=123 Identities=18% Similarity=0.130 Sum_probs=66.9
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCC---CCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCC----------------C
Q ss_conf 99989986301455337899886307---8447369982665214577529728872268864----------------0
Q gi|254780537|r 155 YELNAREYSEKIRNSILPLKTRIEKV---DPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSD----------------S 215 (294)
Q Consensus 155 y~~N~~~~~~~l~~l~~~~~~~~~~~---p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~----------------~ 215 (294)
+..|...-..-+++|.+..- --..| +..+|.+|..-||.-.+|-+= +..++..++.+ .
T Consensus 199 iSgNlD~PEGGfDAlmQ~av-C~~~IGWR~~arrllVf~TDa~fH~AgDG--kL~GIv~PNDg~CHLd~~g~Yt~s~~~D 275 (423)
T smart00187 199 ISGNLDAPEGGFDAIMQAAV-CTEQIGWREDARRLLVFSTDAGFHFAGDG--KLAGIVQPNDGQCHLDNNGEYTMSTTQD 275 (423)
T ss_pred CCCCCCCCCCCHHHHHHHHH-HCCCCCCCCCCEEEEEEECCCCCCCCCCC--CEEEEECCCCCCEEECCCCCCCCCCCCC
T ss_conf 63466887612778888875-20003765574389999837863023676--2443543788730327888524456567
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 0078999999976201697189982789979999999982993444320123787778868999999999999986
Q gi|254780537|r 216 ERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVD 291 (294)
Q Consensus 216 eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~ 291 (294)
=|| |.++.+.+++++|..||+-+.......+.|++......++.|..| ..+-+++++...+.|..
T Consensus 276 YPS---i~ql~~kl~ennI~~IFAVT~~~~~~Y~~Ls~~ipgs~vg~L~~D--------SsNVv~LI~~aY~ki~S 340 (423)
T smart00187 276 YPS---IGQLNQKLAENNINPIFAVTKKQVSLYKELSALIPGSSVGVLSED--------SSNVVELIKDAYNKISS 340 (423)
T ss_pred CCC---HHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEECCC--------CHHHHHHHHHHHHHHCE
T ss_conf 887---899999998539327998522045699999875775403552457--------51389999999987501
No 37
>PHA01735 hypothetical protein
Probab=73.50 E-value=2.9 Score=22.10 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=29.6
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf 4000789999999762016971899827899799999
Q gi|254780537|r 214 DSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQ 250 (294)
Q Consensus 214 ~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ 250 (294)
..|.|++++...++.+|+++|..+-+|.++=.+.++.
T Consensus 27 sGeAttaDL~aA~~~LKdN~I~gva~egsPL~~La~~ 63 (76)
T PHA01735 27 SGEATTADLRAACDWLKSNDITGVAVDGSPLAKLAGL 63 (76)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHH
T ss_conf 7888799999999999987966236799869999875
No 38
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=73.35 E-value=7.6 Score=19.30 Aligned_cols=32 Identities=16% Similarity=0.018 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 64318889999998998630145533789988
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKTR 176 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~ 176 (294)
.-+.|.++-......+++.-+++.-.+.....
T Consensus 252 ~~lsP~~a~l~lrGL~TL~lRm~r~~~nA~~v 283 (406)
T PRK07810 252 PALSAFNAWTLLKGLETLAIRVQHSNASALRI 283 (406)
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 98987888998706897999999999999999
No 39
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=72.36 E-value=8 Score=19.15 Aligned_cols=149 Identities=11% Similarity=0.133 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC----HHHHHHCCC
Q ss_conf 2135678999999999864318889999998998630145533789988630784473699826652----145775297
Q gi|254780537|r 128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL----VYLAEDFGF 203 (294)
Q Consensus 128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af----~Y~~~~yGl 203 (294)
+-..+.......|++.+.+--|+. ++..-..+...+ .+.+..+. .+|..|...+.+ ..|..+.|+
T Consensus 259 ~G~~~Td~flr~l~~~~g~~~~~~---i~~er~r~~d~~----~d~~~~l~----gkrvai~g~~~~~~~l~~~l~elG~ 327 (435)
T cd01974 259 IGVAATDEFLMALSELTGKPIPEE---LEEERGRLVDAM----TDSHQYLH----GKKFALYGDPDFLIGLTSFLLELGM 327 (435)
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHH----HHHHHHHC----CCEEEEECCHHHHHHHHHHHHHCCC
T ss_conf 456999999999999858994699---999999999999----99988742----9679998882899999999998899
Q ss_pred EEEEECCCCCCCC--------------------CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE-
Q ss_conf 2887226886400--------------------0789999999762016971899827899799999999829934443-
Q gi|254780537|r 204 KSLYLWPINSDSE--------------------RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV- 262 (294)
Q Consensus 204 ~~~~~~~~~~~~e--------------------ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~- 262 (294)
+.+.+...+...+ ....|+.++.+.+++.++..||. +..-+.+|++.|++...+
T Consensus 328 ~~~~vv~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~~D~~~l~~~i~~~~~dliig-----~s~~~~iA~~~giP~~~ig 402 (435)
T cd01974 328 EPVHVLTGNGGKRFEKEMQALLDASPYGAGAKVYPGKDLWHLRSLLFTEPVDLLIG-----NTYGKYIARDTDIPLVRFG 402 (435)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHCCCCEEEE-----CCHHHHHHHHHCCCEEEEE
T ss_conf 78999979997789999999986256788867995899999999997559999994-----8078999998099979980
Q ss_pred -EECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf -2012378777886899999999999998620
Q gi|254780537|r 263 -LYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 263 -~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
...|-++..-.+--.|-+. .+-++.|.++|
T Consensus 403 ~P~~dr~~~~~~~~~GY~G~-l~l~e~i~N~l 433 (435)
T cd01974 403 FPIFDRHHHHRFPIVGYEGA-LRLLTTILNTL 433 (435)
T ss_pred CCEEECCCCCCCCCEEHHHH-HHHHHHHHHHH
T ss_conf 68034347656760317659-99999999985
No 40
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=71.83 E-value=7.6 Score=19.28 Aligned_cols=20 Identities=5% Similarity=-0.059 Sum_probs=8.4
Q ss_pred HHHHHHHHCCCEEEEEEEEC
Q ss_conf 99999985189148999626
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLVE 52 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~li~ 52 (294)
+.++++.+..-..+|+.+.+
T Consensus 16 ~~~La~~L~~~Gh~V~vit~ 35 (359)
T cd03808 16 RLPLIKALRAAGYEVHVVAP 35 (359)
T ss_pred HHHHHHHHHHCCCEEEEEEE
T ss_conf 99999999976999999970
No 41
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=70.35 E-value=8.8 Score=18.85 Aligned_cols=149 Identities=13% Similarity=0.106 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC----HHHHHHCCC
Q ss_conf 2135678999999999864318889999998998630145533789988630784473699826652----145775297
Q gi|254780537|r 128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL----VYLAEDFGF 203 (294)
Q Consensus 128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af----~Y~~~~yGl 203 (294)
+-+++.......|++.+.+-.|+. ++.....+...+ .++...+. .+|..|...+.. .-|..+.|+
T Consensus 255 ~G~~~T~~~l~~la~~~g~~~~~~---~~~er~r~~d~~----~d~~~~l~----gkrvai~~~~~~~~~l~~~L~elG~ 323 (428)
T cd01965 255 IGLKATDEFLRALSKLSGKPIPEE---LERERGRLLDAM----LDSHFYLG----GKRVAIAGDPDLLLGLSRFLLEMGA 323 (428)
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHH---HHHHHHHHHHHH----HHHHHHCC----CCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 467999999999999848995599---999999999999----99998607----9789998881889999999998599
Q ss_pred EEEEECCCCCC------------------CCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE--E
Q ss_conf 28872268864------------------000789999999762016971899827899799999999829934443--2
Q gi|254780537|r 204 KSLYLWPINSD------------------SERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV--L 263 (294)
Q Consensus 204 ~~~~~~~~~~~------------------~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~--~ 263 (294)
+.+.+...... ......|+.++.+.+++.+...||.. ..-+.+|++.+++.+.+ .
T Consensus 324 ~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~v~~~~D~~~le~~i~~~~~dliig~-----s~~~~~A~~l~iP~~~~g~P 398 (428)
T cd01965 324 EPVAAVTGTDNPPFEKRMELLASLEGIPAEVVFVGDLWDLESLAKEEPVDLLIGN-----SHGRYLARDLGIPLVRVGFP 398 (428)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEEEC-----HHHHHHHHHCCCCEEEECCC
T ss_conf 5679998179924778899876650799639976999999999974799999978-----57899999859987994177
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 012378777886899999999999998620
Q gi|254780537|r 264 YVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 264 ~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
..|-++....+--.|-+. .+-++.|.++|
T Consensus 399 v~dr~~~~~~~~~GY~G~-l~l~~~i~Nal 427 (428)
T cd01965 399 IFDRLGLHRRPYVGYRGA-LNLLEEIANTL 427 (428)
T ss_pred CEEEECCCCCCEEEHHHH-HHHHHHHHHHH
T ss_conf 044106667751318889-99999999963
No 42
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit; InterPro: IPR006478 This group of sequences describe a subset of formate dehydrogenase alpha chains found mainly in the archaea but also in alpha and gamma proteobacteria and a small number of Gram-positive bacteria. The alpha chain contains domains for molybdopterin dinucleotide binding and molybdopterin oxidoreductase. The holo-enzyme also contains beta and gamma subunits. The enzyme catalyzes the oxidation of formate (produced from pyruvate during anaerobic growth) to carbon dioxide with the concomitant release of two electrons and two protons. The enzyme's purpose is to allow growth on formate in some circumstances and, in the case of FdhH in gamma proteobacteria, to pass electrons to hydrogenase (by which process acid is neutralized) . The alpha subunit of a version of nitrate reductase is closely related.; GO: 0008863 formate dehydrogenase activity, 0015942 formate metabolic process, 0009326 formate dehydrogenase complex.
Probab=70.03 E-value=4.4 Score=20.85 Aligned_cols=172 Identities=14% Similarity=0.156 Sum_probs=109.1
Q ss_pred ECHHHHHHHHHHCC-CEEEE-------------EEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCC-C--HHHHHHH
Q ss_conf 75289999998518-91489-------------996268898012022712457760378999988761-0--6899999
Q gi|254780537|r 29 SFSIIGDITQNIAK-DLVTV-------------TTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHL-E--ETYMKYF 91 (294)
Q Consensus 29 s~~pl~~iv~~I~g-d~v~V-------------~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~-E--~~~~~~~ 91 (294)
..|.++-||+++-| ++||- ...+..|.+ ..+...|.+||++|..|.+= | |=+...+
T Consensus 112 e~Y~~QKlAR~~~GTNNvD~CAR~CH~Ps~~gL~~~~G~GA~-------s~~~~~ie~a~~ivi~G~N~~esHPvv~~~l 184 (694)
T TIGR01591 112 ENYLLQKLARAVLGTNNVDNCARVCHEPSVAGLKQTVGIGAM-------SNTISDIENADLIVIIGANPAESHPVVASKL 184 (694)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCC-------CCCCHHHHCCCEEEEECCCCCCCCHHHHHHH
T ss_conf 678999999998503774554540378789999976245533-------5520344327758997567655543689999
Q ss_pred HHCC--CCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCHH
Q ss_conf 7423--5575211123742022210012334630111221356789999999998643188899999989--98630145
Q gi|254780537|r 92 TNLK--KGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNA--REYSEKIR 167 (294)
Q Consensus 92 ~~~~--~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~--~~~~~~l~ 167 (294)
.++. ++.++|.+ +++...---..|-..|-|+=+.|=.-+.++.++++.|++--=.++++.++|. +.|.+
T Consensus 185 ~~AKk~nGaKiiV~----DpR~t~taksahi~AD~~i~~k~GTdial~na~a~viI~egL~Dk~Fi~~R~~W~~F~E--- 257 (694)
T TIGR01591 185 MRAKKRNGAKIIVI----DPRKTETAKSAHIIADLFIPLKPGTDIALLNAVANVIIEEGLYDKEFIEKRTDWEGFEE--- 257 (694)
T ss_pred HHHHHHCCCEEEEE----CCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHHHHEEECCCCCCHHHHHHHCCCCCHHH---
T ss_conf 99985089789997----58886023221110110651799708999973200242278616688975148785378---
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC
Q ss_conf 53378998863078447369982665214577529728872268864000789999999762016971899827899
Q gi|254780537|r 168 NSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNS 244 (294)
Q Consensus 168 ~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~ 244 (294)
++..++. .|-++.+ ..+ ...++..|+++.+.+-+.+--+|++--+.+
T Consensus 258 -----~r~~V~~--------------------~yTpE~v--E~I---TgV~~d~Ir~~A~~yA~a~~~Ai~wGlGvT 304 (694)
T TIGR01591 258 -----FREIVKG--------------------KYTPEYV--EKI---TGVPADLIREIARMYAKAGSAAILWGLGVT 304 (694)
T ss_pred -----HHHHHCC--------------------CCCHHHC--CCC---CCCCHHHHHHHHHHHHCCCCEEEEECCCCE
T ss_conf -----8877504--------------------7875322--212---578888999999998358967999555020
No 43
>PRK11058 putative GTPase HflX; Provisional
Probab=69.87 E-value=9 Score=18.79 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=38.4
Q ss_pred EECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHH-----HHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf 97528999999851891489996268898012022712-----4577603789999887610689999974235575211
Q gi|254780537|r 28 SSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSA-----DAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIIT 102 (294)
Q Consensus 28 ~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~-----d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~ 102 (294)
.+..-+..+++..|.+-+....--...-||-.|==+=+ ++.+-.+||++|.++ ++.|.=.+.++..- +.++++
T Consensus 25 e~l~El~~L~~tag~evv~~~~q~r~~p~p~~~iG~GK~~El~~~~~~~~~d~vifd~-~Lsp~Q~rnLe~~~-~~~V~D 102 (426)
T PRK11058 25 EDLQEFESLVSSAGVEALQVITGSRKAPHPKYFVGEGKAVEIAEAVKATGASVVLFDH-ALSPAQERNLERLC-ECRVID 102 (426)
T ss_pred CCHHHHHHHHHHCCCEEEEEEEEECCCCCCCCEECHHHHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHHH-CCEEEC
T ss_conf 0299999999978997999999943899753102320999999999964989999999-89989999999986-992880
No 44
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=69.42 E-value=9.2 Score=18.73 Aligned_cols=19 Identities=11% Similarity=0.146 Sum_probs=9.3
Q ss_pred HHHHHHHHCCCEEEEEEEE
Q ss_conf 9999998518914899962
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLV 51 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~li 51 (294)
...+++.++.-..+|+.+.
T Consensus 27 v~~La~~L~~~GH~V~V~t 45 (398)
T cd03800 27 VLELARALARLGHEVDIFT 45 (398)
T ss_pred HHHHHHHHHHCCCEEEEEE
T ss_conf 9999999998699699997
No 45
>pfam00362 Integrin_beta Integrin, beta chain. Integrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer. The sequences repeats have been trimmed due to an overlap with EGF.
Probab=68.96 E-value=9.4 Score=18.66 Aligned_cols=64 Identities=22% Similarity=0.253 Sum_probs=45.4
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 078999999976201697189982789979999999982993444320123787778868999999999999986
Q gi|254780537|r 217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVD 291 (294)
Q Consensus 217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~ 291 (294)
|| +.++.+.+++++|..||+=....-...+.|++......++.|..| ..+-+++++..++.|..
T Consensus 278 PS---v~ql~~kl~ennI~~IFAVt~~~~~~Y~~Ls~~i~gs~vg~L~~D--------SsNIv~LI~~aY~ki~S 341 (424)
T pfam00362 278 PS---VGQLAEKLSENNINPIFAVTENVVDLYKELSELIPGSTVGVLSSD--------SSNVVQLIKDAYNKISS 341 (424)
T ss_pred CC---HHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEECCC--------CHHHHHHHHHHHHHHHE
T ss_conf 88---899999998649259999750245899999975776525662467--------50289999999987522
No 46
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=68.58 E-value=9.6 Score=18.61 Aligned_cols=72 Identities=11% Similarity=0.094 Sum_probs=51.3
Q ss_pred HCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 30145533789988630784473699826652145775297288722688640007899999997620169718998
Q gi|254780537|r 163 SEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFS 239 (294)
Q Consensus 163 ~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~ 239 (294)
--.|.+|. ++.....+|..=..+|+.|+-+..++++||+....+.- +.+..+++-+++.+.+++.++..|.-
T Consensus 101 ~HCL~DLL--~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~---~~~~k~e~E~~~~~ll~~~~~DlvVL 172 (287)
T COG0788 101 DHCLGDLL--YRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPV---TKENKAEAEARLLELLEEYGADLVVL 172 (287)
T ss_pred HHHHHHHH--HHHHCCCCCCCEEEEECCCHHHHHHHHHCCCCEEECCC---CCCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 77799999--99761886872589974877889999974998665467---87753478999999999859987820
No 47
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=68.32 E-value=9.7 Score=18.58 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=7.7
Q ss_pred HHHHHHHHCCCEEEEEEE
Q ss_conf 999999851891489996
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTL 50 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~l 50 (294)
...+++.++....+|+.+
T Consensus 18 v~~La~~L~~~GHeV~vi 35 (371)
T cd04962 18 ATELGKALARRGHEVHFI 35 (371)
T ss_pred HHHHHHHHHHCCCEEEEE
T ss_conf 999999999759999999
No 48
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=67.60 E-value=10 Score=18.48 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=34.6
Q ss_pred CCCEEEEECCCC-----HHHHHHCCCEEEEECCCCCC-CCCC-------------HHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 473699826652-----14577529728872268864-0007-------------8999999976201697189982789
Q gi|254780537|r 183 EKRWFVTSEGCL-----VYLAEDFGFKSLYLWPINSD-SERS-------------PSMMRHAINQMRSHKIKFIFSESTN 243 (294)
Q Consensus 183 ~~~~~v~~H~af-----~Y~~~~yGl~~~~~~~~~~~-~eps-------------~~~l~~~~~~ik~~~v~~if~e~~~ 243 (294)
.+|.||.....+ .++.++.|++++++-.-..+ .+.- -.|-.++.+.|.+.....||
T Consensus 302 gkr~fVfgd~ThA~~~~~~l~~EmG~~v~~~gty~r~~a~~~r~~~~~~~~e~litdD~~eV~~~I~~~~P~~vf----- 376 (510)
T CHL00076 302 GKKAVVFGDATHAASITKILSREMGIRVVCAGTYCKHDAEWFREQVQGFCDEILITDDHTEVGDMIARIEPSAIF----- 376 (510)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCHHC-----
T ss_conf 644899806259999999877762842354124215555999999984486325506489999999871982312-----
Q ss_pred CHHHHHHHHHHHCCCEEE
Q ss_conf 979999999982993444
Q gi|254780537|r 244 SDQPAKQVAYETNASYGG 261 (294)
Q Consensus 244 ~~~~~~~ia~e~~~~~~~ 261 (294)
....=+-+++..+++-.+
T Consensus 377 GTqmERh~~krl~IPc~v 394 (510)
T CHL00076 377 GTQMERHIGKRLDIPCGV 394 (510)
T ss_pred CHHHHHHHHHHCCCCCCC
T ss_conf 448887766640887567
No 49
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=66.81 E-value=10 Score=18.38 Aligned_cols=81 Identities=17% Similarity=0.321 Sum_probs=41.2
Q ss_pred CCCCCEEEEECHH--------HHHHHHHHCCCEEEEEEEECCCC----CCCC-----CCCCHHHHHHHCCCCEEEEECCC
Q ss_conf 3588289997528--------99999985189148999626889----8012-----02271245776037899998876
Q gi|254780537|r 20 TTQKKVVLSSFSI--------IGDITQNIAKDLVTVTTLVEAGN----DSHS-----YQVTSADAIKIQNADLILCNGLH 82 (294)
Q Consensus 20 ~~~~~~Vv~s~~p--------l~~iv~~I~gd~v~V~~li~~g~----dpH~-----ye~tp~d~~~i~~Adliv~~G~~ 82 (294)
.+++|.|++--.. +..|++..+-.- +++....|. +|.. +.-++.....+++||+++..|..
T Consensus 230 ~AkrPvIl~G~G~~~~~a~~~l~~Lae~l~iPV--~tt~~gkg~~pe~hpl~~G~~G~~g~~~a~~~l~~aDlvL~iG~r 307 (612)
T PRK07789 230 AARRPVLYVGGGVIRAEASEELRELAELTGIPV--VTTLMARGAFPDSHPQNLGMPGMHGTVAAVAALQRSDLLIALGAR 307 (612)
T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCE--EEECCCCCCCCCCCCHHCCCCCCCCCHHHHHHHCCCCEEEEECCC
T ss_conf 279968998977134658999999999619978--983057688998880104777777888999765058868886255
Q ss_pred CCHHHHHHHHHCCCCCCCCC
Q ss_conf 10689999974235575211
Q gi|254780537|r 83 LEETYMKYFTNLKKGTKIIT 102 (294)
Q Consensus 83 ~E~~~~~~~~~~~~~~~~i~ 102 (294)
|..+.........++.++|.
T Consensus 308 l~~~~tg~~~~~~p~~kvI~ 327 (612)
T PRK07789 308 FDDRVTGKLDSFAPDAKVIH 327 (612)
T ss_pred CCCCCCCCCCCCCCCCEEEE
T ss_conf 67555687343599873899
No 50
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=66.79 E-value=6.8 Score=19.63 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEE--EECCCCHHHHHHHHHHHCCCEEEEEECCC
Q ss_conf 00789999999762016971899--82789979999999982993444320123
Q gi|254780537|r 216 ERSPSMMRHAINQMRSHKIKFIF--SESTNSDQPAKQVAYETNASYGGVLYVDS 267 (294)
Q Consensus 216 eps~~~l~~~~~~ik~~~v~~if--~e~~~~~~~~~~ia~e~~~~~~~~~~~d~ 267 (294)
.||...+...++.+|+++|..|+ .|+..+.+..+ ..|+.+....|-|+
T Consensus 27 ~Pt~~~l~~yi~elkk~~Vt~vVRvCe~tYd~~~~e----~~GI~v~D~~FdDG 76 (172)
T PTZ00242 27 APSPSNLPLYIKELQRRNVRHLVRVCGPTYDAELLE----KNGIEVHEWPFDDG 76 (172)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH----HCCCEEEECCCCCC
T ss_conf 998032999999999769909998177665856887----67956987677899
No 51
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=66.68 E-value=9.2 Score=18.72 Aligned_cols=86 Identities=12% Similarity=0.055 Sum_probs=55.1
Q ss_pred HHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEE------EEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC-CC-
Q ss_conf 998863078447369982665214577529728------8722688640007899999997620169718998278-99-
Q gi|254780537|r 173 LKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKS------LYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSEST-NS- 244 (294)
Q Consensus 173 ~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~------~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~-~~- 244 (294)
+-+.++.....+ .-.-||.||.|++.-.|=. +...|++++.=...-|-...++.+|+-+|++|=-... ..
T Consensus 63 IpnI~aAA~~tG--~~AiHPGYGFLSENA~FAe~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS~GP~~~ 140 (451)
T TIGR00514 63 IPNIIAAAEITG--ADAIHPGYGFLSENADFAEICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGSDGPLVE 140 (451)
T ss_pred HHHHHHHHHHCC--CCEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCC
T ss_conf 588999887748--807628877344312478898738826667871201126886899999974887662388886310
Q ss_pred -HHHHHHHHHHHCCCEE
Q ss_conf -7999999998299344
Q gi|254780537|r 245 -DQPAKQVAYETNASYG 260 (294)
Q Consensus 245 -~~~~~~ia~e~~~~~~ 260 (294)
-.-...||++.|=|++
T Consensus 141 ~~~e~~~~A~~IGyPv~ 157 (451)
T TIGR00514 141 DEEEAVRIAKEIGYPVI 157 (451)
T ss_pred CHHHHHHHHHHCCCCEE
T ss_conf 27889999974789689
No 52
>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism. In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,
Probab=66.65 E-value=10 Score=18.36 Aligned_cols=41 Identities=15% Similarity=0.292 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 899999997620169718-99827899799999999829934443
Q gi|254780537|r 219 PSMMRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGV 262 (294)
Q Consensus 219 ~~~l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294)
...|+.+++.+++.+|++ +|.+| ..+.++. |+++|+..+++
T Consensus 109 ~~~L~~~i~~lk~~~IrvSLFIDP--d~~qi~~-a~~~Gad~VEl 150 (234)
T cd00003 109 AEKLKPIIERLKDAGIRVSLFIDP--DPEQIEA-AKEVGADRVEL 150 (234)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC--CHHHHHH-HHHHCCCEEEE
T ss_conf 889999999998659827997279--8789999-99849399998
No 53
>TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=66.64 E-value=6.1 Score=19.93 Aligned_cols=31 Identities=13% Similarity=0.162 Sum_probs=21.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECH
Q ss_conf 9269999999998604643358828999752
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFS 31 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~ 31 (294)
|||+|+++++++++.+|+....+-.|-+.-.
T Consensus 1 Mkk~~~~~~~~~~~~SCg~~~~GELvGv~~~ 31 (449)
T TIGR03525 1 MKKYLVFAALVVLVYSCGSGDKGELVGVEGK 31 (449)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCEEEEECCC
T ss_conf 9124899999998721058997138731487
No 54
>TIGR01511 ATPase-IB1_Cu copper-translocating P-type ATPase; InterPro: IPR006403 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (F-, V- and A-ATPases contain rotary motors) and in the type of ions they transport , . F-ATPases (F1F0-ATPases) in mitochondria, chloroplasts and bacterial plasma membranes are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases) are primarily found in eukaryotic vacuoles, catalysing ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases) are found in Archaea and function like F-ATPases. P-ATPases (E1E2-ATPases) are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles . P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H^+, Na^+, K^+, Mg^2+, Ca^2+, Ag^+ and Ag^2+, Zn^2+, Co^2+, Pb^2+, Ni^2+, Cd^2+, Cu^+ and Cu^2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents P-type ATPases that specialise in cation and copper transport; those transporting copper (3.6.3.4 from EC) have been classified as belonging to the IB subfamily , , . These proteins are involved in a variety of processes in both prokaryotes and eukaryotes. Some of these P-ATPases import copper into cells, such as in Arabidopsis sp., which require copper to create functional hormone receptors for ethylene signalling. Other P-ATPases are involved in copper export out of cells, such as occurs with the efflux of hepatic copper into the bile in eukaryotes. In bacteria, some of these P-ATPases play a role in osmotic adaptation. Certain copper ATPases have been implicated in both Wilson and Menkes diseases . More information about this protein can be found at Protein of the Month: ATP Synthases .; GO: 0004008 copper-exporting ATPase activity, 0005524 ATP binding, 0046872 metal ion binding, 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0016020 membrane.
Probab=66.46 E-value=11 Score=18.33 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=32.0
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 9999997620169718998278997999999998299344
Q gi|254780537|r 221 MMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG 260 (294)
Q Consensus 221 ~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~ 260 (294)
+=+++++.+|+.||.++. =++.|++.++.+|++.|+++.
T Consensus 375 ~a~~~i~~Lk~~Gi~~~m-LtGDN~~~A~a~A~~lGI~v~ 413 (545)
T TIGR01511 375 EAKEVIQALKRRGIEPVM-LTGDNRKTAKAVAKELGINVR 413 (545)
T ss_pred HHHHHHHHHHHCCCEEEE-EECCCHHHHHHHHHHHCCEEE
T ss_conf 689999999875987999-866987999999997283333
No 55
>PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional
Probab=66.33 E-value=11 Score=18.32 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=15.9
Q ss_pred CCCCHHHHH----HHCCCCEEEEEC
Q ss_conf 022712457----760378999988
Q gi|254780537|r 60 YQVTSADAI----KIQNADLILCNG 80 (294)
Q Consensus 60 ye~tp~d~~----~i~~Adliv~~G 80 (294)
+...|+.++ .|++|.-|||||
T Consensus 294 lDIGp~Ti~~~~~~I~~a~TI~WNG 318 (653)
T PRK13962 294 LDIGPETVELFKEKLSDAKTIVWNG 318 (653)
T ss_pred ECCCHHHHHHHHHHHHHCCEEEEEC
T ss_conf 4688999999999997799999978
No 56
>PRK08462 biotin carboxylase; Validated
Probab=66.28 E-value=9.1 Score=18.75 Aligned_cols=12 Identities=42% Similarity=0.437 Sum_probs=4.5
Q ss_pred HCCCCEEEEECCC
Q ss_conf 6037899998876
Q gi|254780537|r 70 IQNADLILCNGLH 82 (294)
Q Consensus 70 i~~Adliv~~G~~ 82 (294)
..++|.+ +=|.|
T Consensus 74 ~~~~dAi-hPGyG 85 (446)
T PRK08462 74 IFEADAI-FPGYG 85 (446)
T ss_pred HHCCCEE-ECCCH
T ss_conf 9591989-86820
No 57
>TIGR01326 OAH_OAS_sulfhy O-acetylhomoserine aminocarboxypropyltransferase/cysteine synthase; InterPro: IPR006235 This family of sequences is a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine sulfhydrylase (OAH, 2.5.1.49 from EC) and O-acetylserine sulfhydrylase (OAS, 2.5.1.47 from EC). An alternate name for OAH sulfhydrylase is homocysteine synthase.; GO: 0016765 transferase activity transferring alkyl or aryl (other than methyl) groups, 0006520 amino acid metabolic process.
Probab=65.40 E-value=11 Score=18.20 Aligned_cols=61 Identities=10% Similarity=0.090 Sum_probs=38.1
Q ss_pred CCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHH-------HHHHHHHHH--CCCEE
Q ss_conf 66521457752972887226886400078999999976201697189982789979-------999999982--99344
Q gi|254780537|r 191 EGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQ-------PAKQVAYET--NASYG 260 (294)
Q Consensus 191 H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~-------~~~~ia~e~--~~~~~ 260 (294)
++=|.|-.+++|+++..+..- + . +.++.+.|+ .+=|+||.|+.-||+ .+..||++. +|+.+
T Consensus 110 ynLF~~TlkrlGIevrFvd~d----d-~---pe~~~k~id-~nTKAvf~EtIgNP~~~v~Die~~a~~Ah~~PhgvPli 179 (434)
T TIGR01326 110 YNLFKHTLKRLGIEVRFVDGD----D-D---PEELEKAID-ENTKAVFAETIGNPALNVPDIEAVAEVAHAHPHGVPLI 179 (434)
T ss_pred HHHHHHHHHHCCEEEEEECCC----C-C---HHHHHHHCC-CCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 789999555448148872788----8-8---789997606-67518984012387767678589999998678983488
No 58
>pfam03740 PdxJ Pyridoxal phosphate biosynthesis protein PdxJ. Members of this family belong to the PdxJ family that catalyses the condensation of 1-deoxy-d-xylulose-5-phosphate (DXP) and 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one to form pyridoxine 5'-phosphate (PNP). This reaction is involved in de novo synthesis of pyridoxine (vitamin B6) and pyridoxal phosphate.
Probab=64.75 E-value=11 Score=18.12 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 899999997620169718-99827899799999999829934443201237
Q gi|254780537|r 219 PSMMRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGVLYVDSL 268 (294)
Q Consensus 219 ~~~l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l 268 (294)
...|+.+++.+++.++++ +|.+| +.+.++. |+++|+..+++ ++.+.
T Consensus 110 ~~~L~~~i~~lk~~girvSlFIDp--d~~~i~~-a~~~Gad~VEl-hTG~Y 156 (239)
T pfam03740 110 LEKLKPAIRRLKNAGIRVSLFIDP--DPEQIEA-AKIVGADRIEL-HTGPY 156 (239)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECC--CHHHHHH-HHHCCCCEEEE-ECHHH
T ss_conf 689999999986078538997079--9899999-99809299985-04778
No 59
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=64.53 E-value=11 Score=18.09 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=8.9
Q ss_pred HHHHHHHCCCEEEEEEEEC
Q ss_conf 9999985189148999626
Q gi|254780537|r 34 GDITQNIAKDLVTVTTLVE 52 (294)
Q Consensus 34 ~~iv~~I~gd~v~V~~li~ 52 (294)
..+++.+.....+|+.+.+
T Consensus 22 ~~la~~L~~~Gh~V~v~~~ 40 (359)
T cd03823 22 HDLAEALAKRGHEVAVLTA 40 (359)
T ss_pred HHHHHHHHHCCCEEEEEEC
T ss_conf 9999999977998999955
No 60
>TIGR00382 clpX ATP-dependent Clp protease, ATP-binding subunit ClpX; InterPro: IPR004487 ClpX is a member of the HSP (heat-shock protein) 100 family. Gel filtration and electron microscopy showed that ClpX subunits associate to form a six-membered ring that is stabilized by binding of ATP or nonhydrolyzable analogs of ATP . It functions as an ATP-depedent molecular chaperone and is the regulatory subunit of the ClpXP protease . ClpXP is involved in DNA damage repair, stationary-phase gene expression, and ssrA-mediated protein quality control. To date more than 50 proteins include transcription factors, metabolic enzymes, and proteins involved in the starvation and oxidative stress responses have been identified as substrates . The N-terminal domain of ClpX is a C4-type zinc binding domain (ZBD) involved in substrate recognition. ZBD forms a very stable dimer that is essential for promoting the degradation of some typical ClpXP substrates such as lO and MuA . ; GO: 0005515 protein binding, 0005524 ATP binding, 0016887 ATPase activity, 0015031 protein transport.
Probab=64.44 E-value=11 Score=18.08 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCHH--HHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 078999999976201697189982789979--999999982993444320123787778868999999
Q gi|254780537|r 217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQ--PAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLL 282 (294)
Q Consensus 217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~--~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m 282 (294)
....++.++. +.+.|| ++..|.=|.| +|++||+..++|+.--.- -+|++.|+-|.|=..++
T Consensus 140 velehleeVE--L~KSNI--LLiGPTGSGKTLLAqTLA~~L~VPfAiADA-TtLTEAGYVGEDVENIL 202 (452)
T TIGR00382 140 VELEHLEEVE--LSKSNI--LLIGPTGSGKTLLAQTLARILNVPFAIADA-TTLTEAGYVGEDVENIL 202 (452)
T ss_pred HHHHHHHHHH--HHCCCE--EEECCCCCCHHHHHHHHHHHCCCCEEECCH-HHHHCCCCCCCCHHHHH
T ss_conf 2354444433--300662--454688852689999999873887421111-10200664242288999
No 61
>pfam11897 DUF3417 Protein of unknown function (DUF3417). This family of proteins are functionally uncharacterized. This protein is found in bacteria and archaea. Proteins in this family are typically between 145 to 860 amino acids in length. This protein is found associated with pfam00343. This protein has a conserved AYF sequence motif.
Probab=64.37 E-value=5.4 Score=20.28 Aligned_cols=74 Identities=18% Similarity=0.364 Sum_probs=37.0
Q ss_pred CCHHHHHHH-HHHHHHHHHHHHH-H--HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHH
Q ss_conf 301112213-5678999999999-8--64318889999998998630145533789988630784473699826652145
Q gi|254780537|r 122 PNPHAWMSL-TNAMIYIENIRKA-L--TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYL 197 (294)
Q Consensus 122 ~dpH~Wldp-~~~~~~a~~I~~~-L--~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~ 197 (294)
.||..|-.. .|-+.+...+... | ...||+--..|++=.+.|.+-+.. ..++...- +. ...+...||
T Consensus 40 iDp~lW~~~~hNPv~~L~~v~~~rL~~la~D~~f~~~~~~v~~~~~~Yl~~-~~w~~~~~---~~------~~~~~VAYF 109 (119)
T pfam11897 40 LDPELWEETGHNPVRLLGEVSQERLEELAADPEFLARYDRVAADFDEYLSA-PTWFQRNP---GD------EGPRPIAYF 109 (119)
T ss_pred HCHHHHHHCCCCHHHHHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHCC-CCCCCCCC---CC------CCCCCEEEE
T ss_conf 699999876899799998689999999956999999999999999999868-86432357---77------899956997
Q ss_pred HHHCCCEE
Q ss_conf 77529728
Q gi|254780537|r 198 AEDFGFKS 205 (294)
Q Consensus 198 ~~~yGl~~ 205 (294)
+-+|||..
T Consensus 110 S~EfGlhe 117 (119)
T pfam11897 110 SMEFGLHE 117 (119)
T ss_pred CCCCCCCC
T ss_conf 10304433
No 62
>KOG0202 consensus
Probab=64.33 E-value=12 Score=18.07 Aligned_cols=108 Identities=16% Similarity=0.111 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHH
Q ss_conf 8643188899999989986301-455337899886307844736998266521457752972887226886400078999
Q gi|254780537|r 144 LTALDPSNAKKYELNAREYSEK-IRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMM 222 (294)
Q Consensus 144 L~~~dP~~~~~y~~N~~~~~~~-l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l 222 (294)
...+++..++.+.++..++-.+ |.-|--..+......|.. .-.-+.-.|-.-+-+|..+++.|+. +|.-.++
T Consensus 517 ~~pLt~~~re~il~~~~~~g~~gLRvLalA~~~~~~~~~~~----~~l~~~s~~~~~E~~LtFvGlVGi~---DPPR~ev 589 (972)
T KOG0202 517 KVPLTQASRETILANVYEMGSEGLRVLALASKDSPGQVPDD----QDLNDTSNRATAESDLTFVGLVGIL---DPPRPEV 589 (972)
T ss_pred EEECCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHH----HHHCCCCCCCCCCCCEEEEEEEECC---CCCCHHH
T ss_conf 54475888999999999873333369999746877667023----4312543211112543899874246---8996568
Q ss_pred HHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCE
Q ss_conf 9999762016971899827899799999999829934
Q gi|254780537|r 223 RHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASY 259 (294)
Q Consensus 223 ~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~ 259 (294)
++.++...+.||+++. -++.+...+++|+++.|+..
T Consensus 590 ~~ai~~c~~aGIrV~m-ITGD~~~TA~AI~r~iGi~~ 625 (972)
T KOG0202 590 ADAIELCRQAGIRVIM-ITGDNKETAEAIAREIGIFS 625 (972)
T ss_pred HHHHHHHHHCCCEEEE-ECCCCHHHHHHHHHHHCCCC
T ss_conf 9999999973977999-83898789999999839876
No 63
>KOG0553 consensus
Probab=64.09 E-value=6 Score=19.96 Aligned_cols=48 Identities=31% Similarity=0.394 Sum_probs=29.1
Q ss_pred CCCHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 630111221----------35678999999999864318889999998998630145533
Q gi|254780537|r 121 EPNPHAWMS----------LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSI 170 (294)
Q Consensus 121 ~~dpH~Wld----------p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~ 170 (294)
..|||.|=. -......++.-.++| ++||+|+ .|..|++....++.+..
T Consensus 143 ~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaL-eldP~Ne-~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553 143 SIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKAL-ELDPDNE-SYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHHHCCCC
T ss_conf 6290899999998799980673799999997643-1688848-99988999998724787
No 64
>PRK07798 acyl-CoA synthetase; Validated
Probab=64.04 E-value=12 Score=18.03 Aligned_cols=18 Identities=11% Similarity=0.043 Sum_probs=6.5
Q ss_pred CEEEEECHHHHHHHHHHC
Q ss_conf 289997528999999851
Q gi|254780537|r 24 KVVLSSFSIIGDITQNIA 41 (294)
Q Consensus 24 ~~Vv~s~~pl~~iv~~I~ 41 (294)
++++.+..-+...+.++.
T Consensus 101 ~~~~i~~~~~~~~~~~~~ 118 (532)
T PRK07798 101 AVALVYHREFAPRVAEVL 118 (532)
T ss_pred CCEEEECHHHHHHHHHHH
T ss_conf 849997533678999887
No 65
>KOG1111 consensus
Probab=63.76 E-value=8.2 Score=19.05 Aligned_cols=67 Identities=18% Similarity=0.295 Sum_probs=40.0
Q ss_pred EEEECCCCCCCCCCCCHHHHHHHCCCC--------EEEEE-CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCC
Q ss_conf 996268898012022712457760378--------99998-87610689999974235575211123742022210012
Q gi|254780537|r 48 TTLVEAGNDSHSYQVTSADAIKIQNAD--------LILCN-GLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTS 117 (294)
Q Consensus 48 ~~li~~g~dpH~ye~tp~d~~~i~~Ad--------liv~~-G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~ 117 (294)
.+.+|.-.++|+|.|-+.+ -.++| =.+|+ |.++=--+.+.+-+..++...+-++||=+.+...+.-.
T Consensus 171 vsvIPnAv~~~~f~P~~~~---~~S~~i~~ivv~sRLvyrKGiDll~~iIp~vc~~~p~vrfii~GDGPk~i~lee~lE 246 (426)
T KOG1111 171 VSVIPNAVVTHTFTPDAAD---KPSADIITIVVASRLVYRKGIDLLLEIIPSVCDKHPEVRFIIIGDGPKRIDLEEMLE 246 (426)
T ss_pred EEECCCEEECCCCCCCCCC---CCCCCEEEEEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHH
T ss_conf 5533523540334658434---688870699997411112426789999999973598736999568865021999999
No 66
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=63.57 E-value=12 Score=17.97 Aligned_cols=29 Identities=21% Similarity=0.145 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 64318889999998998630145533789
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPL 173 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~ 173 (294)
.-+.|.++-......+++.-+++.-.+..
T Consensus 279 ~~lsP~da~L~lRGL~TL~lRm~r~~~nA 307 (436)
T PRK07812 279 SAASPFNAFLIAQGLETLSLRIERHVANA 307 (436)
T ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 13580777898736683899999999999
No 67
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=62.40 E-value=12 Score=17.84 Aligned_cols=83 Identities=7% Similarity=-0.026 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECC------CCHHHHHHCCCEEEEECCCCCCCCCC
Q ss_conf 643188899999989986301455337899886307844736998266------52145775297288722688640007
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEG------CLVYLAEDFGFKSLYLWPINSDSERS 218 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~------af~Y~~~~yGl~~~~~~~~~~~~eps 218 (294)
.-+.|.++-......+++.-+++.-.+.......-+....+.--+.|| -+..+.+.++ ..-++..+ +-..+
T Consensus 219 ~~~sp~~a~l~lrgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~-g~ggl~sf--~l~~~ 295 (369)
T cd00614 219 TILSPFDAWLLLRGLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMS-GYGGVFSF--ELKGG 295 (369)
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCC-CCCEEEEE--EECCC
T ss_conf 7689788899886017599999999999999999997199988797878988804899997689-99717799--97698
Q ss_pred HHHHHHHHHHHC
Q ss_conf 899999997620
Q gi|254780537|r 219 PSMMRHAINQMR 230 (294)
Q Consensus 219 ~~~l~~~~~~ik 230 (294)
.....++.+.++
T Consensus 296 ~~~~~~f~~~l~ 307 (369)
T cd00614 296 LEAAKKFLNALK 307 (369)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998589
No 68
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=62.11 E-value=7.2 Score=19.45 Aligned_cols=21 Identities=14% Similarity=0.286 Sum_probs=14.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCC
Q ss_conf 926999999999860464335
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATT 21 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~ 21 (294)
|||++++++++++++++|++.
T Consensus 1 mm~~~l~~~~~~~~L~GC~~~ 21 (238)
T PRK12696 1 MIRKLLAASCAVLLLSGCNAA 21 (238)
T ss_pred CHHHHHHHHHHHHHHHCCCCC
T ss_conf 958999999999995165688
No 69
>TIGR01116 ATPase-IIA1_Ca calcium-translocating P-type ATPase, SERCA-type; InterPro: IPR005782 This model describes Ca2+ ATPases (3.6.3.8 from EC) from eukaryotes and includes significant representatives from plants. Plasma membrane Ca2+ ATPases are primarily responsible for extrusion of calcium from cytoplasmic milieu to outside, coupled to the hydrolyis of ATP. Besides Ca2+ ATPases, Na+/Ca2+ exchangers are also involved in the maintenance of Ca2+ homestasis in the cell. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=61.75 E-value=13 Score=17.76 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=48.0
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 775297288722688640007899999997620169718998278997999999998299
Q gi|254780537|r 198 AEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNA 257 (294)
Q Consensus 198 ~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~ 257 (294)
-++-+|..+|+.|+ .+|.-.+++..++.-++-||++|.. ++.+..+|++|+++.|+
T Consensus 450 ~~Es~Ltf~G~vGl---~DPPR~EV~~ai~~CR~AGIrVImI-TGD~KeTA~AicR~IG~ 505 (800)
T TIGR01116 450 KEESKLTFIGVVGL---LDPPRPEVADAIEKCREAGIRVIMI-TGDNKETAEAICRRIGI 505 (800)
T ss_pred CCCCCCEEEEEEEC---CCCCCHHHHHHHHHHHHCCCEEEEE-ECCCCHHHHHHHHHHHH
T ss_conf 14678678888506---8948168999999887379789998-47982468999767501
No 70
>PTZ00333 triosephosphate isomerase; Provisional
Probab=61.57 E-value=13 Score=17.74 Aligned_cols=59 Identities=8% Similarity=0.206 Sum_probs=44.3
Q ss_pred CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----------CCEEEEEECCCCHHHHHHHH
Q ss_conf 7369982665214577529728872268864000789999999762016-----------97189982789979999999
Q gi|254780537|r 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-----------KIKFIFSESTNSDQPAKQVA 252 (294)
Q Consensus 184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-----------~v~~if~e~~~~~~~~~~ia 252 (294)
++.+++|.|.|. +..|..|||.++.++.+.||+. +++. ++....+++-++.+.
T Consensus 161 ~~iiIAYEPvWA---------------IGTG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~I-LYGGSVn~~Na~~i~ 224 (252)
T PTZ00333 161 DKVVIAYEPVWA---------------IGTGKVATPEQAQEVHAFIRKWLSEKVGADVAKKVRI-IYGGSVNEKNCHELI 224 (252)
T ss_pred HCEEEEECCHHH---------------CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHCCCCE-EEECCCCHHHHHHHH
T ss_conf 241899667653---------------5889999999999999999999998718545067748-872777999999996
Q ss_pred HHHCCC
Q ss_conf 982993
Q gi|254780537|r 253 YETNAS 258 (294)
Q Consensus 253 ~e~~~~ 258 (294)
+.-++.
T Consensus 225 ~~~~vD 230 (252)
T PTZ00333 225 KQPDID 230 (252)
T ss_pred CCCCCC
T ss_conf 688999
No 71
>COG2262 HflX GTPases [General function prediction only]
Probab=61.28 E-value=13 Score=17.71 Aligned_cols=128 Identities=13% Similarity=0.215 Sum_probs=61.8
Q ss_pred ECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCC--HHHH---HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf 75289999998518914899962688980120227--1245---776037899998876106899999742355752111
Q gi|254780537|r 29 SFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVT--SADA---IKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITV 103 (294)
Q Consensus 29 s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~t--p~d~---~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~ 103 (294)
+.--+..+++..+++-+....-....-||-.|==+ ..++ ....+||++|.++ .+.|.=...+... -+.+||+=
T Consensus 21 ~leEl~~La~tag~~v~~~~~q~r~~pdp~~~iG~GK~eEi~~~v~~~~ad~VIf~~-~LsP~Q~~NLe~~-l~~kVIDR 98 (411)
T COG2262 21 SLEELAELAETAGYEVVEVVTQKRERPDPKTYIGSGKLEEIAEAVEETGADLVIFDH-ELSPSQLRNLEKE-LGVKVIDR 98 (411)
T ss_pred HHHHHHHHHHHCCCEEEEEEEEECCCCCCCEECCCCHHHHHHHHHHHCCCCEEEECC-CCCHHHHHHHHHH-HCCEEEEH
T ss_conf 299999999975976816678712589963000765599999999843999999999-6898899999999-79889841
Q ss_pred CCCCCH---------------------------------HH-HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 237420---------------------------------22-21001233463011122135678999999999864318
Q gi|254780537|r 104 TDGINP---------------------------------IG-VSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDP 149 (294)
Q Consensus 104 ~~~i~~---------------------------------~~-~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP 149 (294)
...|-. +. .+++...-|-...-+=.|-...+.-...|...|.+..-
T Consensus 99 t~LILdIFa~RA~S~EgkLQVeLAqL~Y~lpRl~~~~~~l~~~GggiG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~ 178 (411)
T COG2262 99 TQLILDIFAQRARSREGKLQVELAQLRYELPRLVGSGSHLSRLGGGIGFRGPGETQLETDRRRIRRRIAKLKRELENVEK 178 (411)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86999999977404135544428755323067675541200116777788987127788899999999999999999998
Q ss_pred HHHHHHHHH
Q ss_conf 889999998
Q gi|254780537|r 150 SNAKKYELN 158 (294)
Q Consensus 150 ~~~~~y~~N 158 (294)
..+..-+++
T Consensus 179 ~R~~~R~~R 187 (411)
T COG2262 179 AREPRRKKR 187 (411)
T ss_pred HHHHHHHHH
T ss_conf 788876533
No 72
>PRK11627 hypothetical protein; Provisional
Probab=61.23 E-value=11 Score=18.25 Aligned_cols=20 Identities=25% Similarity=0.381 Sum_probs=11.7
Q ss_pred CHHHHHHHHHHHHHCCCCCC
Q ss_conf 92699999999986046433
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASAT 20 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~ 20 (294)
|||++++.+++++++++|++
T Consensus 1 ~mkk~~~~l~a~~lL~gCas 20 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCAT 20 (192)
T ss_pred CHHHHHHHHHHHHHHHHHCC
T ss_conf 92879999999999986069
No 73
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=61.22 E-value=13 Score=17.70 Aligned_cols=41 Identities=17% Similarity=0.269 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 899999997620169718-99827899799999999829934443
Q gi|254780537|r 219 PSMMRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGV 262 (294)
Q Consensus 219 ~~~l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294)
...|+.+++.+++.+|++ +|.+| +.+.++ .|+++|+..+++
T Consensus 112 ~~~L~~~i~~lk~~gIrvSLFiDP--d~~~i~-~a~~~Gad~VEl 153 (240)
T PRK05265 112 FDKLKPAIARLKDAGIRVSLFIDP--DPEQIE-AAAEVGADRIEL 153 (240)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC--CHHHHH-HHHHHCCCEEEE
T ss_conf 899999999998659817997279--878999-999849399998
No 74
>PRK10780 periplasmic chaperone; Provisional
Probab=61.07 E-value=5.6 Score=20.20 Aligned_cols=34 Identities=9% Similarity=0.181 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHH
Q ss_conf 9269999999998604643358828999752899
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIG 34 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~ 34 (294)
|||++++++|++.+..+..++.|+-||-+-..+.
T Consensus 1 mKk~l~~~~l~l~l~~~a~Aa~KIgvVd~~~i~~ 34 (161)
T PRK10780 1 MKKWLLAAGLGLALATSAQAADKIAIVNMGSLFQ 34 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCEEEEEHHHHHH
T ss_conf 9589999999998588887753545532999998
No 75
>PRK11411 fecB iron-dicitrate transporter substrate-binding subunit; Provisional
Probab=60.79 E-value=13 Score=17.65 Aligned_cols=70 Identities=14% Similarity=0.046 Sum_probs=33.3
Q ss_pred CCCCHHHHHHCCCEEEEEC-CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH-----HC-CCEEEEE
Q ss_conf 6652145775297288722-688640007899999997620169718998278997999999998-----29-9344432
Q gi|254780537|r 191 EGCLVYLAEDFGFKSLYLW-PINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYE-----TN-ASYGGVL 263 (294)
Q Consensus 191 H~af~Y~~~~yGl~~~~~~-~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e-----~~-~~~~~~~ 263 (294)
+.-.+.+.+..|++..... .-.+..+.|. +.+.+.+..+||.-....+...+.+.+. +. +|-..+.
T Consensus 195 ~s~~g~il~~lG~~~~~~~~~~~~~~~iS~-------E~l~~~dpD~I~v~~~~~~~~~~~~~~~p~w~~l~AVKn~~V~ 267 (297)
T PRK11411 195 ESYAGSVLAALGLQVPIAAMNGAPMPSISL-------EQLLALNPDWLLVAHYREESIVKRWQQDPLWQMLTAAQKQQVA 267 (297)
T ss_pred CCHHHHHHHHCCCCCCCCCCCCCCCCCCCH-------HHHHCCCCCEEEEEECCCHHHHHHHHCCHHHHCCCEEECCCEE
T ss_conf 841799999839987876557887641079-------9984049998999947872688877539055409843479489
Q ss_pred ECCC
Q ss_conf 0123
Q gi|254780537|r 264 YVDS 267 (294)
Q Consensus 264 ~~d~ 267 (294)
.+|+
T Consensus 268 ~vd~ 271 (297)
T PRK11411 268 EVDS 271 (297)
T ss_pred EECH
T ss_conf 9882
No 76
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=59.70 E-value=14 Score=17.53 Aligned_cols=10 Identities=20% Similarity=0.082 Sum_probs=4.3
Q ss_pred CCCHHHHHHH
Q ss_conf 0078999999
Q gi|254780537|r 216 ERSPSMMRHA 225 (294)
Q Consensus 216 eps~~~l~~~ 225 (294)
-.++.++.++
T Consensus 623 rV~l~EVE~~ 632 (719)
T PRK08043 623 MVSLEMVEQL 632 (719)
T ss_pred EECHHHHHHH
T ss_conf 9998999999
No 77
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=59.59 E-value=14 Score=17.51 Aligned_cols=60 Identities=12% Similarity=0.160 Sum_probs=41.4
Q ss_pred CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC----------CCEEEEEECCCCHHHHHHHH
Q ss_conf 47369982665214577529728872268864000789999999762016----------97189982789979999999
Q gi|254780537|r 183 EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH----------KIKFIFSESTNSDQPAKQVA 252 (294)
Q Consensus 183 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~----------~v~~if~e~~~~~~~~~~ia 252 (294)
.++.+++|.|.|. +..+..||+.++.++...|++. ++++ ++....+++-++.+.
T Consensus 154 ~~~~iIAYEPvWA---------------IGtG~~as~~~i~ev~~~Ir~~l~~~~~~~~~~v~i-LYGGSV~~~N~~~i~ 217 (242)
T cd00311 154 LAPVVIAYEPVWA---------------IGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRI-LYGGSVNPENAAELL 217 (242)
T ss_pred HCCEEEEECCHHH---------------CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCE-EECCCCCHHHHHHHH
T ss_conf 0360999776886---------------189999999999999999999999862020367548-960778988999995
Q ss_pred HHHCCC
Q ss_conf 982993
Q gi|254780537|r 253 YETNAS 258 (294)
Q Consensus 253 ~e~~~~ 258 (294)
+.-++.
T Consensus 218 ~~~~vd 223 (242)
T cd00311 218 AQPDID 223 (242)
T ss_pred CCCCCC
T ss_conf 689999
No 78
>COG0648 Nfo Endonuclease IV [DNA replication, recombination, and repair]
Probab=59.48 E-value=13 Score=17.78 Aligned_cols=20 Identities=5% Similarity=0.091 Sum_probs=11.2
Q ss_pred CCCCCHHHHHHHHHHHCCCC
Q ss_conf 40007899999997620169
Q gi|254780537|r 214 DSERSPSMMRHAINQMRSHK 233 (294)
Q Consensus 214 ~~eps~~~l~~~~~~ik~~~ 233 (294)
+..-+-.+|+++++.+++.+
T Consensus 149 ~~g~~F~~L~eii~~~~~~~ 168 (280)
T COG0648 149 GKGTQFGELAEIIDLIEEKE 168 (280)
T ss_pred CCCCCHHHHHHHHHHHCCCC
T ss_conf 65642241999998633657
No 79
>PRK10270 hypothetical protein; Provisional
Probab=59.47 E-value=5.7 Score=20.14 Aligned_cols=15 Identities=13% Similarity=0.408 Sum_probs=9.0
Q ss_pred CHHHHHHHHHHHHHC
Q ss_conf 926999999999860
Q gi|254780537|r 1 MLRYFICLLFSYIPM 15 (294)
Q Consensus 1 M~r~~~~l~~~~~~~ 15 (294)
|||.+++++++++++
T Consensus 1 Mkk~~~~~~~l~~~l 15 (340)
T PRK10270 1 MKKVLLIILLLLVVL 15 (340)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 902899999999999
No 80
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=59.47 E-value=14 Score=17.50 Aligned_cols=19 Identities=21% Similarity=0.160 Sum_probs=10.8
Q ss_pred HHHHHHHHCCCEEEEEEEE
Q ss_conf 9999998518914899962
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLV 51 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~li 51 (294)
...+++.+.....+|+.+.
T Consensus 20 ~~~la~~L~~~Gh~V~v~t 38 (375)
T cd03821 20 VLNLSKALAKLGHEVTVAT 38 (375)
T ss_pred HHHHHHHHHHCCCEEEEEE
T ss_conf 9999999997799899997
No 81
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=59.06 E-value=14 Score=17.45 Aligned_cols=146 Identities=11% Similarity=0.015 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEE--CCCC--HHHHHHCC
Q ss_conf 21356789999999998643188899-9999899863014553378998863078447369982--6652--14577529
Q gi|254780537|r 128 MSLTNAMIYIENIRKALTALDPSNAK-KYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTS--EGCL--VYLAEDFG 202 (294)
Q Consensus 128 ldp~~~~~~a~~I~~~L~~~dP~~~~-~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~--H~af--~Y~~~~yG 202 (294)
+-+.+.......|++.+.+--++.++ .+.+..+.+.. ..+.++.+++ .+|.++.. ..++ --.++++|
T Consensus 252 ~Gi~~T~~~Lr~IA~~fG~el~~~~E~lI~~e~~~~~~----~l~~yr~~L~----GKrv~i~~Gg~~~~~~i~~~~eLG 323 (421)
T cd01976 252 FGPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEA----VIAKYRPRLE----GKTVMLYVGGLRPRHYIGAYEDLG 323 (421)
T ss_pred CCHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCC----CCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 58799999999999985908889999999999999999----9999998708----988999899874689999999879
Q ss_pred CEEEEECC-CCCC-----------------CCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 72887226-8864-----------------00078999999976201697189982789979999999982993444320
Q gi|254780537|r 203 FKSLYLWP-INSD-----------------SERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLY 264 (294)
Q Consensus 203 l~~~~~~~-~~~~-----------------~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~ 264 (294)
++++++-. ..++ .++++ .++.+.|++.+...++.- .-. +-++...|++...+..
T Consensus 324 mevV~~g~~~~~~~Dye~~~~~~~~~~~iidd~~~---~Ele~~i~~~~pDl~l~g-~ke----r~ia~K~gIP~~~~~~ 395 (421)
T cd01976 324 MEVVGTGYEFAHRDDYERTEVIPKEGTLLYDDVTH---YELEEFVKRLKPDLIGSG-IKE----KYVFQKMGIPFRQMHS 395 (421)
T ss_pred CEEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCH---HHHHHHHHHCCCCEEEEC-CCC----CHHEEECCCCEEECCC
T ss_conf 88999731227476799998508988289727999---999999985399999954-762----0200444888576688
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 123787778868999999999999986209
Q gi|254780537|r 265 VDSLSKPDGPAPTYLDLLRFSLTKIVDTLF 294 (294)
Q Consensus 265 ~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL~ 294 (294)
-| ..+ +=-.|.+++ +-...|..+||
T Consensus 396 ~~---~~~-pyaGy~G~v-~far~i~~~i~ 420 (421)
T cd01976 396 WD---YSG-PYHGFDGFA-IFARDMDMAIN 420 (421)
T ss_pred CC---CCC-CCCCHHHHH-HHHHHHHHHHC
T ss_conf 66---577-764476799-99999999852
No 82
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=58.94 E-value=14 Score=17.44 Aligned_cols=50 Identities=14% Similarity=-0.031 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 64318889999998998630145533789988630784473699826652
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL 194 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af 194 (294)
.-+.|.++-......+++.-+++.-.+.......-+....+.--++||.+
T Consensus 240 ~~lsP~~a~l~lrGL~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgL 289 (391)
T PRK08133 240 PTLSPFNAWVFLKGLETLSLRMEAHSANALELAEWLEAHPGVERVFYPGL 289 (391)
T ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 88893277898604776999999999999999999970999147989999
No 83
>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR). Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.
Probab=58.21 E-value=15 Score=17.36 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=5.0
Q ss_pred CCCCEEEEECC
Q ss_conf 03789999887
Q gi|254780537|r 71 QNADLILCNGL 81 (294)
Q Consensus 71 ~~Adliv~~G~ 81 (294)
++|.+||..|.
T Consensus 229 ~~a~VIVl~~~ 239 (452)
T cd06362 229 PNARVVVLFCR 239 (452)
T ss_pred CCCEEEEEEEC
T ss_conf 99879999953
No 84
>KOG2836 consensus
Probab=58.02 E-value=14 Score=17.46 Aligned_cols=29 Identities=10% Similarity=0.236 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHHHCCCCCEEEE--EECCCCH
Q ss_conf 0789999999762016971899--8278997
Q gi|254780537|r 217 RSPSMMRHAINQMRSHKIKFIF--SESTNSD 245 (294)
Q Consensus 217 ps~~~l~~~~~~ik~~~v~~if--~e~~~~~ 245 (294)
|+-+.|..+++.+|++|+..+. .|+..+.
T Consensus 25 PtnaTln~fieELkKygvttvVRVCe~TYdt 55 (173)
T KOG2836 25 PTNATLNKFIEELKKYGVTTVVRVCEPTYDT 55 (173)
T ss_pred CCCHHHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 8711499999999963972899951464676
No 85
>COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only]
Probab=57.87 E-value=15 Score=17.32 Aligned_cols=139 Identities=10% Similarity=0.127 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHCCC-EEEEEEEECCCCCCCC--------CCCCHHHHHHHCCCCEEEEECCCCC---HHHH-HHHHHCC-
Q ss_conf 52899999985189-1489996268898012--------0227124577603789999887610---6899-9997423-
Q gi|254780537|r 30 FSIIGDITQNIAKD-LVTVTTLVEAGNDSHS--------YQVTSADAIKIQNADLILCNGLHLE---ETYM-KYFTNLK- 95 (294)
Q Consensus 30 ~~pl~~iv~~I~gd-~v~V~~li~~g~dpH~--------ye~tp~d~~~i~~Adliv~~G~~~E---~~~~-~~~~~~~- 95 (294)
.|-++-+++++-|. +|+--+=. -+.|.. +-.....+..|.+||+++.+|.+-- |-+. ++.....
T Consensus 371 ~Yl~QKLaR~v~gtNNVDncsR~--CqsPa~~gL~rTvG~g~dsgsi~dve~ad~vliIG~N~te~HPV~asr~kra~k~ 448 (978)
T COG3383 371 NYLMQKLARQVFGTNNVDNCSRY--CQSPATDGLFRTVGSGADSGSIEDVEGADLVLIIGANPTEGHPVLASRLKRAHKL 448 (978)
T ss_pred HHHHHHHHHHHHCCCCCCCCHHH--CCCCCCCCCHHEEECCCCCCCHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 99999999997446885320110--0686446403105436778888888507759997678776685089999999984
Q ss_pred CCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHCCHHHHHHH
Q ss_conf 557521112374202221001233463011122135678999999999864318889999998---99863014553378
Q gi|254780537|r 96 KGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELN---AREYSEKIRNSILP 172 (294)
Q Consensus 96 ~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N---~~~~~~~l~~l~~~ 172 (294)
.+.++|.+.-.-..+..+. |-|+-.-|-.-.....+++..++...=..+.+++++ ++.|.+-|....-+
T Consensus 449 ~G~KliV~D~R~~emaerA--------dlf~~pkpGtd~a~l~AvakyiideGl~D~~Fi~er~~~f~d~~~~l~~~tle 520 (978)
T COG3383 449 RGQKLIVIDPRKHEMAERA--------DLFLHPKPGTDLAWLTAVAKYIIDEGLHDEAFIRERVDWFEDYAKSLAPFTLE 520 (978)
T ss_pred CCCEEEEECCCHHHHHHHH--------HCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCCCHH
T ss_conf 5974999536366777755--------30058999964899999999998078514789986444399999875103887
Q ss_pred HHHHHH
Q ss_conf 998863
Q gi|254780537|r 173 LKTRIE 178 (294)
Q Consensus 173 ~~~~~~ 178 (294)
+...+.
T Consensus 521 ~~E~~T 526 (978)
T COG3383 521 YAEKAT 526 (978)
T ss_pred HHHHHC
T ss_conf 877640
No 86
>pfam10673 DUF2487 Protein of unknown function (DUF2487). This is a bacterial family of uncharacterized proteins.
Probab=57.60 E-value=15 Score=17.29 Aligned_cols=97 Identities=13% Similarity=0.219 Sum_probs=61.0
Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf 33789988630784473699826652145775297288722688640007899999997620169718998278997999
Q gi|254780537|r 169 SILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPA 248 (294)
Q Consensus 169 l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~ 248 (294)
+..+...++ ++|.+ .-|+|.|+.. +..+-...+|++..+.+++.|.+.||+=+ +....
T Consensus 40 la~ElERQl-----kGRv~--L~P~ftY~~~-------------~~~~~~~~rL~~w~~~l~~~Gf~HV~~vT--sD~~W 97 (143)
T pfam10673 40 LAEELERQL-----KGRVL--LLPAFTYLAS-------------EQKDEAGERLKEWTNALKEEGFRHVFFLT--SDSSW 97 (143)
T ss_pred HHHHHHHHH-----CCCEE--ECCCEEEECC-------------CCHHHHHHHHHHHHHHHHHCCCCEEEEEE--CCHHH
T ss_conf 999999986-----67478--4278031045-------------66678999999999999975984699995--57134
Q ss_pred HHHHHHHCCCEEEE--EECCCCCCCCCCCCCH-HHHHHHHHHHHHHHC
Q ss_conf 99999829934443--2012378777886899-999999999998620
Q gi|254780537|r 249 KQVAYETNASYGGV--LYVDSLSKPDGPAPTY-LDLLRFSLTKIVDTL 293 (294)
Q Consensus 249 ~~ia~e~~~~~~~~--~~~d~l~~~~~~~~~Y-~~~m~~N~~~l~~aL 293 (294)
+....+++....-+ ++++.+.. +| -++++..+..|.+.|
T Consensus 98 k~~~~~~~~~l~wlPaipLe~m~~------~~k~~ii~~qv~qll~~l 139 (143)
T pfam10673 98 KEEEEELEGDLFWLPAIPLEHMSD------SLKRKIVDDQVKQLLNLL 139 (143)
T ss_pred HHCCCCCCCEEEEEECCCHHHHCH------HHHHHHHHHHHHHHHHHH
T ss_conf 331146676089950677566099------899999999999999999
No 87
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=56.83 E-value=15 Score=17.21 Aligned_cols=76 Identities=21% Similarity=0.204 Sum_probs=53.8
Q ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf 9999985189148999626889801202271245776037899998--8761068999997423557521112374202
Q gi|254780537|r 34 GDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCN--GLHLEETYMKYFTNLKKGTKIITVTDGINPI 110 (294)
Q Consensus 34 ~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~--G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~ 110 (294)
.+++.+|--++.++.+| |.-..|.....++.-...+++||++|.. ...+..++.++.....++..++.++.|+.+.
T Consensus 34 ~~~~~~i~~~~~N~~yL-p~i~lp~~l~at~Dl~~a~~~ad~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~ 111 (329)
T COG0240 34 EEIVAEINETRENPKYL-PGILLPPNLKATTDLAEALDGADIIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPE 111 (329)
T ss_pred HHHHHHHHHCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 99999997347670105-9962886322246899997229999997875789999998764336787499974465588
No 88
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=56.36 E-value=16 Score=17.16 Aligned_cols=32 Identities=6% Similarity=-0.032 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 64318889999998998630145533789988
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKTR 176 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~ 176 (294)
.-+.|..+-......+++.-+++.-.+.....
T Consensus 237 ~~~sP~~a~l~lrGL~TL~lRm~~~~~nA~~l 268 (386)
T PRK07811 237 AVPGPFDAYLTMRGLKTLAVRMDRHSENAEAV 268 (386)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87885788899865736999999999999999
No 89
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=56.23 E-value=16 Score=17.14 Aligned_cols=39 Identities=10% Similarity=0.080 Sum_probs=17.5
Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 776037899998876106899999742355752111237420
Q gi|254780537|r 68 IKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINP 109 (294)
Q Consensus 68 ~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~ 109 (294)
+.+..||.++..+..+-.. ++...-+..++..+..|++.
T Consensus 138 ~l~~~a~~iI~vS~~~~~~---l~~~G~~~~ki~vi~~GvD~ 176 (367)
T cd05844 138 RLARRAALFIAVSQFIRDR---LLALGFPPEKVHVHPIGVDT 176 (367)
T ss_pred HHHHHCCEEEECCHHHHHH---HHHCCCCHHHEEEECCCCCH
T ss_conf 9997269999699999999---99859897899997786367
No 90
>COG1464 NlpA ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]
Probab=56.20 E-value=16 Score=17.14 Aligned_cols=126 Identities=15% Similarity=0.168 Sum_probs=59.5
Q ss_pred CCCEEEEECHHHHHHHHHHCC-----CEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCC
Q ss_conf 882899975289999998518-----914899962688980120227124577603789999887610689999974235
Q gi|254780537|r 22 QKKVVLSSFSIIGDITQNIAK-----DLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKK 96 (294)
Q Consensus 22 ~~~~Vv~s~~pl~~iv~~I~g-----d~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~ 96 (294)
.+++|.+|..|-+.+.+.+.. ...++...-=.+ |- .|. .+|.+-|+= .|-....|+++...+....
T Consensus 29 ~~I~vg~~~~p~a~ile~~~k~~~~k~Gi~l~i~~FtD-----Y~-~PN--~AL~~gdiD-aN~FQH~pyL~~~~k~~~~ 99 (268)
T COG1464 29 KTIKVGATPGPHAEILEVVVKPALKKKGLDLKIVEFTD-----YV-QPN--EALADGDID-ANAFQHKPYLDQFNKEHGG 99 (268)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEECC-----CC-CHH--HHHHCCCCC-CHHHHCHHHHHHHHHHCCC
T ss_conf 71799636896599999998778885596599998148-----76-655--787668846-0012146889999997399
Q ss_pred CCCCCCCCC-CCCHHH----------HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH-----HHHHHHHHH
Q ss_conf 575211123-742022----------2100123346301112213567899999999-98643188-----899999989
Q gi|254780537|r 97 GTKIITVTD-GINPIG----------VSEDTSVDSEPNPHAWMSLTNAMIYIENIRK-ALTALDPS-----NAKKYELNA 159 (294)
Q Consensus 97 ~~~~i~~~~-~i~~~~----------~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~-~L~~~dP~-----~~~~y~~N~ 159 (294)
. ++.++. .+.++. .-.++..=.-+ -||.|-.+....+.+ .|+++.+. ....+.+|-
T Consensus 100 ~--Lv~vg~~~i~Pmg~YSkk~ksl~el~~GatIaiP-----NDpsN~gRAL~lL~~aGLIkLk~~~~~~aT~~DI~eNP 172 (268)
T COG1464 100 K--LVAVGNTHIEPMGLYSKKYKSLAELKDGATIAIP-----NDPTNEGRALLLLQKAGLIKLKDGVNLLATPKDITENP 172 (268)
T ss_pred C--EEEEEEEEECCCEECCHHCCCHHHCCCCCEEECC-----CCCCCHHHHHHHHHHCCCEEECCCCCCCCCHHHHHHCC
T ss_conf 7--8987557761425012200868467999989887-----89873567999999879679768876558887886194
Q ss_pred HHHH
Q ss_conf 9863
Q gi|254780537|r 160 REYS 163 (294)
Q Consensus 160 ~~~~ 163 (294)
+.+.
T Consensus 173 K~lk 176 (268)
T COG1464 173 KNLK 176 (268)
T ss_pred CCCE
T ss_conf 4575
No 91
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=55.56 E-value=16 Score=17.07 Aligned_cols=28 Identities=14% Similarity=0.190 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 6431888999999899863014553378
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILP 172 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~ 172 (294)
.-+.|.++-......+++.-+++.-.+.
T Consensus 275 ~~lsp~da~L~lRGL~TL~lRm~r~~~n 302 (433)
T PRK08134 275 ACLSPMNAWQLLQGIETLPLRMERHVAN 302 (433)
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 6668367799873677689999999987
No 92
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=54.61 E-value=17 Score=16.97 Aligned_cols=84 Identities=12% Similarity=0.203 Sum_probs=53.5
Q ss_pred CCCEEEEECCCC--------HHHHHHCCCEEEEECCCCCC-CCCCHHHHHHHHHHHCCCCCEEEEEEC----CCCHHHHH
Q ss_conf 473699826652--------14577529728872268864-000789999999762016971899827----89979999
Q gi|254780537|r 183 EKRWFVTSEGCL--------VYLAEDFGFKSLYLWPINSD-SERSPSMMRHAINQMRSHKIKFIFSES----TNSDQPAK 249 (294)
Q Consensus 183 ~~~~~v~~H~af--------~Y~~~~yGl~~~~~~~~~~~-~eps~~~l~~~~~~ik~~~v~~if~e~----~~~~~~~~ 249 (294)
+++.+++.=|.| +.|++|.|..++.- +++ ++| ++=+-..++..|..|+.++++++ +....+++
T Consensus 110 Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~---~~gn~DP-AaV~fDAi~~Ak~~niDvvliDTAGRLqnk~NLm~ 185 (284)
T TIGR00064 110 GKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQ---KEGNADP-AAVIFDAIQAAKARNIDVVLIDTAGRLQNKVNLMD 185 (284)
T ss_pred CCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEEC---CCCCCCC-HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHH
T ss_conf 9908998275247999999999898838755407---8898871-78999989999874997899734754546620399
Q ss_pred HHHH-------HH--CCCEEEEEECCCCCC
Q ss_conf 9999-------82--993444320123787
Q gi|254780537|r 250 QVAY-------ET--NASYGGVLYVDSLSK 270 (294)
Q Consensus 250 ~ia~-------e~--~~~~~~~~~~d~l~~ 270 (294)
.|.| .. ++|...++.+|+.+.
T Consensus 186 EL~KI~RV~~k~~~~~aP~e~lLVlDAt~G 215 (284)
T TIGR00064 186 ELKKIKRVIKKVDPVDAPDEVLLVLDATTG 215 (284)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEEHHHHH
T ss_conf 999999987321025787557542202220
No 93
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=53.80 E-value=17 Score=16.89 Aligned_cols=17 Identities=18% Similarity=0.143 Sum_probs=9.8
Q ss_pred HHHHCCCCEEEEECCCC
Q ss_conf 57760378999988761
Q gi|254780537|r 67 AIKIQNADLILCNGLHL 83 (294)
Q Consensus 67 ~~~i~~Adliv~~G~~~ 83 (294)
...+..||.++......
T Consensus 125 ~~~~~~ad~ii~vS~~~ 141 (355)
T cd03799 125 DEKLARADFVVAISEYN 141 (355)
T ss_pred HHHHHHCCEEEECCHHH
T ss_conf 99998399999989999
No 94
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=52.99 E-value=18 Score=16.80 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH----HHHHHCCC
Q ss_conf 21356789999999998643188899999989986301455337899886307844736998266521----45775297
Q gi|254780537|r 128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV----YLAEDFGF 203 (294)
Q Consensus 128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~----Y~~~~yGl 203 (294)
+-+.+.......|++.+....+ -.+.+++....+...++. ++..+. .+|.++...+.+. -|.++.|+
T Consensus 240 iG~~~T~~fl~~la~~~g~~~~-~e~~i~~e~~~~~~~l~~----~~~~l~----Gkrv~i~~~~~~~~~~~~~l~ElG~ 310 (406)
T cd01967 240 YGFEDTSESLRKIAKFFGDEEK-AEEVIAEEEARIKPELEK----YRERLK----GKKVIIYTGGARSWHVIAALRELGM 310 (406)
T ss_pred CCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHH----HHHHHC----CCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 7789999999999998599600-689999999999999999----999836----9759997685468999999998899
Q ss_pred EEEEECCCCCCCC---------------CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf 2887226886400---------------0789999999762016971899827899799999999829934443201237
Q gi|254780537|r 204 KSLYLWPINSDSE---------------RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSL 268 (294)
Q Consensus 204 ~~~~~~~~~~~~e---------------ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l 268 (294)
+++.+.......+ ....+..++.+.+++.++..|+..+ .-+.+++..|+|...+..
T Consensus 311 evv~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~e~~~~~~~~~pDllig~s-----~~~~~a~~lgiP~~d~~~---- 381 (406)
T cd01967 311 EVVAAGYEFGHDDDYERIRKILDEGTLLVDDYNDLELEELVEKLKPDLILSGI-----KEKYVAQKLGIPFLDLHS---- 381 (406)
T ss_pred EEEEEEECCCCCHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEEECC-----CCHHHHHHCCCCEEEEEC----
T ss_conf 69998744788028899986368877576069989999998307999999787-----434889982998899626----
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 87778868999999999999986209
Q gi|254780537|r 269 SKPDGPAPTYLDLLRFSLTKIVDTLF 294 (294)
Q Consensus 269 ~~~~~~~~~Y~~~m~~N~~~l~~aL~ 294 (294)
.-..+--.|-+++ .-++.|.++|+
T Consensus 382 -~~~~~~~GY~G~~-~l~~~i~nal~ 405 (406)
T cd01967 382 -ERNGPYAGYEGFL-NFARDIDTALN 405 (406)
T ss_pred -CCCCCEEEHHHHH-HHHHHHHHHHC
T ss_conf -7678536567899-99999999863
No 95
>PRK00031 lolA outer-membrane lipoprotein carrier protein; Reviewed
Probab=52.32 E-value=8.9 Score=18.83 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=14.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCC
Q ss_conf 926999999999860464335
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATT 21 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~ 21 (294)
|||++++++++++++++.+.+
T Consensus 1 mk~~~~~~~~~~~l~~~~~~A 21 (201)
T PRK00031 1 MKKLLIAALLAAALVASSAFA 21 (201)
T ss_pred CCHHHHHHHHHHHHHHHHHCC
T ss_conf 915999999999987766450
No 96
>PRK00315 potassium-transporting ATPase subunit C; Reviewed
Probab=52.12 E-value=1.8 Score=23.53 Aligned_cols=31 Identities=26% Similarity=0.232 Sum_probs=22.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2334630111221356789999999998643188
Q gi|254780537|r 117 SVDSEPNPHAWMSLTNAMIYIENIRKALTALDPS 150 (294)
Q Consensus 117 ~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~ 150 (294)
...++-|||+ ||.++..++.-|+++- .+.++
T Consensus 124 aSgSGLDPhI--S~~aA~~Qv~RVA~ar-gls~~ 154 (195)
T PRK00315 124 ASGSGLDPHI--SPAAAAYQIPRVAAAR-QLPVE 154 (195)
T ss_pred CCCCCCCCCC--CHHHHHHHHHHHHHHH-CCCHH
T ss_conf 7756689998--9999999999999983-95999
No 97
>pfam01591 6PF2K 6-phosphofructo-2-kinase. This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyses both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif.
Probab=52.09 E-value=18 Score=16.71 Aligned_cols=39 Identities=13% Similarity=0.264 Sum_probs=28.6
Q ss_pred EEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHH
Q ss_conf 887226886400078999999976201697189982789979
Q gi|254780537|r 205 SLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQ 246 (294)
Q Consensus 205 ~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~ 246 (294)
++++.. ..-.|.++=+.+.+.+++.+++++|.|..-+.+
T Consensus 98 ~VaI~D---ATN~T~~RR~~i~~~~~~~~~~vlFiEsic~D~ 136 (223)
T pfam01591 98 QVAIFD---ATNTTRERRKNILDFAEENGLKVFFLESICDDP 136 (223)
T ss_pred EEEEEE---CCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCH
T ss_conf 299996---887689999999999986697499999973888
No 98
>pfam01053 Cys_Met_Meta_PP Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.
Probab=52.08 E-value=18 Score=16.71 Aligned_cols=31 Identities=10% Similarity=0.006 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 6431888999999899863014553378998
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKT 175 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~ 175 (294)
.-+.|..+-....+.+++.-+++.-.+....
T Consensus 232 ~~~~p~~a~l~~rgl~TL~lR~~~~~~nA~~ 262 (381)
T pfam01053 232 AVLSPFDAWLLLRGLKTLGLRMERHQENALK 262 (381)
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 8788688899871478799999998889999
No 99
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=51.11 E-value=19 Score=16.61 Aligned_cols=34 Identities=9% Similarity=0.052 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 6431888999999899863014553378998863
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIE 178 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~ 178 (294)
..+.|.++-......+++.-+++.-.+.......
T Consensus 228 ~~l~p~~a~ll~rGL~TL~lR~~~~~~nA~~vA~ 261 (379)
T PRK06176 228 GVLGPQDSWLLQRGIKTLGLRMEAHQKNALCVAE 261 (379)
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 7778467899972225289999999999999999
No 100
>PRK02991 D-serine dehydratase; Provisional
Probab=50.96 E-value=19 Score=16.59 Aligned_cols=85 Identities=18% Similarity=0.216 Sum_probs=53.2
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 89988630784473699826652145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r 172 PLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV 251 (294)
Q Consensus 172 ~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i 251 (294)
..+.+++. .+..+=..||-|-|+= .| .--+|.-++.=.+.+=...|.|+|+||..++-..-.+
T Consensus 253 RLk~Ql~~---~gi~Vd~~hPLfVYLP--CG------------VGG~PGGVafGLK~~fGd~VhcfFaEPthsPcmllg~ 315 (443)
T PRK02991 253 RLKAQLAE---QGIVVDADHPLFVYLP--CG------------VGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGV 315 (443)
T ss_pred HHHHHHHH---CCCCCCCCCCEEEEEC--CC------------CCCCHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
T ss_conf 99999997---5985279997079953--78------------8877057888689871584389984787567899998
Q ss_pred HHHHCCCEEEE-EECCCCCCCCC
Q ss_conf 99829934443-20123787778
Q gi|254780537|r 252 AYETNASYGGV-LYVDSLSKPDG 273 (294)
Q Consensus 252 a~e~~~~~~~~-~~~d~l~~~~~ 273 (294)
+....-++.+. +-+|+.+..++
T Consensus 316 ~Tglhd~isV~D~Gldn~T~ADG 338 (443)
T PRK02991 316 MTGLHDQISVQDIGIDNRTAADG 338 (443)
T ss_pred HHCCCCCCCEEECCCCCCCCCCC
T ss_conf 64789998532127777645566
No 101
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=50.94 E-value=19 Score=16.59 Aligned_cols=16 Identities=6% Similarity=0.052 Sum_probs=8.1
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 4000789999999762
Q gi|254780537|r 214 DSERSPSMMRHAINQM 229 (294)
Q Consensus 214 ~~eps~~~l~~~~~~i 229 (294)
|.-.++.++.++....
T Consensus 1039 GerVel~EVE~~l~~~ 1054 (1139)
T PRK06814 1039 GEMISLTAVEELASEL 1054 (1139)
T ss_pred CEEECHHHHHHHHHHC
T ss_conf 9998889999999848
No 102
>PRK00549 competence damage-inducible protein A; Provisional
Probab=50.91 E-value=19 Score=16.59 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=31.2
Q ss_pred HHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHH
Q ss_conf 9999998518914899962688980120227124577603789999887610689999
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKY 90 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~ 90 (294)
-.++++++..-.++|...+--+.++.... ..-...+.++|++|.+| |+-|.-+++
T Consensus 22 ~~~la~~L~~~G~~v~~~~tv~D~~~~i~--~~l~~a~~r~d~vi~tG-GLGPT~DDl 76 (413)
T PRK00549 22 AQFLSEKLAELGIDVYHQTVVGDNPERLL--SALEIAEERSDLIITTG-GLGPTKDDL 76 (413)
T ss_pred HHHHHHHHHHCCCCEEEEEEECCCHHHHH--HHHHHHHHCCCEEEEEC-CCCCCCCHH
T ss_conf 99999999977981889999389899999--99999974599999908-848998445
No 103
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=50.74 E-value=17 Score=16.89 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=13.6
Q ss_pred CHHHHHHHHH---HHHHCCCCC-CCCCCEEEEE
Q ss_conf 9269999999---998604643-3588289997
Q gi|254780537|r 1 MLRYFICLLF---SYIPMSASA-TTQKKVVLSS 29 (294)
Q Consensus 1 M~r~~~~l~~---~~~~~~~~~-~~~~~~Vv~s 29 (294)
|||++++.++ +++.+++|+ .++.-.|+++
T Consensus 1 MKKKl~~~~~~~~svl~LaaCs~~~~~~~vat~ 33 (310)
T PRK01326 1 MKKKLIAGAVTLLSVATLAACSKTNDNTKVISM 33 (310)
T ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
T ss_conf 908899999999999999871699988068982
No 104
>PRK09701 D-allose transporter subunit; Provisional
Probab=50.71 E-value=19 Score=16.57 Aligned_cols=102 Identities=15% Similarity=0.088 Sum_probs=51.9
Q ss_pred CHHHHHH---HHHHHHHCCCCCCCCCCEEEEEC--HHHHHHHHHHCC-----CEEEEEEEECC-CCCCCCCCCCHHHHHH
Q ss_conf 9269999---99999860464335882899975--289999998518-----91489996268-8980120227124577
Q gi|254780537|r 1 MLRYFIC---LLFSYIPMSASATTQKKVVLSSF--SIIGDITQNIAK-----DLVTVTTLVEA-GNDSHSYQVTSADAIK 69 (294)
Q Consensus 1 M~r~~~~---l~~~~~~~~~~~~~~~~~Vv~s~--~pl~~iv~~I~g-----d~v~V~~li~~-g~dpH~ye~tp~d~~~ 69 (294)
|||++.+ +++++++++.++.+.++-|++.. .|++..+++=+. -.++|+...++ ..|+ ..|+..
T Consensus 1 m~k~~~~~~~~~~~~~~~~~a~a~~~iavi~k~~~npf~~~~~~Ga~~aAk~~G~~v~v~~~~~~~D~------~~Qi~~ 74 (311)
T PRK09701 1 MNKYLKYFSGTLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDF------QSQLQL 74 (311)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCH------HHHHHH
T ss_conf 93699999999999998887743684999968889989999999999999986997999927987899------999999
Q ss_pred H-----CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 6-----03789999887610689999974235575211123742
Q gi|254780537|r 70 I-----QNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGIN 108 (294)
Q Consensus 70 i-----~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~ 108 (294)
| ++.|.|+.+-.+-+....-+.+....+.+++.+...++
T Consensus 75 Ie~~I~~gvdaIii~p~d~~a~~~~i~~A~~aGIpVV~~D~~v~ 118 (311)
T PRK09701 75 FEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKID 118 (311)
T ss_pred HHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCC
T ss_conf 99999759999999189877889999999977991896367667
No 105
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=49.82 E-value=20 Score=16.47 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=11.5
Q ss_pred HHHHHHHHCCCEEEEEEEECC
Q ss_conf 999999851891489996268
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLVEA 53 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~li~~ 53 (294)
+..+++.+.....+|+.+.+.
T Consensus 20 ~~~la~~L~~~G~~V~vit~~ 40 (374)
T cd03801 20 VLELARALAARGHEVTVLTPG 40 (374)
T ss_pred HHHHHHHHHHCCCEEEEEEEC
T ss_conf 999999999779989999607
No 106
>pfam07355 GRDB Glycine/sarcosine/betaine reductase selenoprotein B (GRDB). This family represents a conserved region approximately 350 residues long within the selenoprotein B component of the bacterial glycine, sarcosine and betaine reductase complexes.
Probab=49.22 E-value=20 Score=16.41 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=23.4
Q ss_pred HHHHHHHHHHCCCEEEEEEEECCCCC---CCCCCCCHH--HHHHHCCCCEEEEECCCCC
Q ss_conf 28999999851891489996268898---012022712--4577603789999887610
Q gi|254780537|r 31 SIIGDITQNIAKDLVTVTTLVEAGND---SHSYQVTSA--DAIKIQNADLILCNGLHLE 84 (294)
Q Consensus 31 ~pl~~iv~~I~gd~v~V~~li~~g~d---pH~ye~tp~--d~~~i~~Adliv~~G~~~E 84 (294)
.|---+-+. .||..+|+.-+--|.+ -|.=+.+.. ++-+=.+.|+||. |..|-
T Consensus 35 Gpg~~l~~~-l~~~~eIv~TiICGDnYf~en~dea~~~il~mv~~~~pDlfiA-GPAFn 91 (349)
T pfam07355 35 GPGLQLNGL-LKDEAEVVHTVICGDSYFNENIEEAVAEILEMLKEEKPDLFIA-GPAFN 91 (349)
T ss_pred CHHHHHHHH-HCCCCEEEEEEEECCHHHHCCHHHHHHHHHHHHHHCCCCEEEE-CCCCC
T ss_conf 869999998-4678789999996862444099999999999998429998987-66325
No 107
>PRK05586 biotin carboxylase; Validated
Probab=49.04 E-value=9.9 Score=18.50 Aligned_cols=13 Identities=23% Similarity=0.419 Sum_probs=4.9
Q ss_pred HCCCCEEEEECCCC
Q ss_conf 60378999988761
Q gi|254780537|r 70 IQNADLILCNGLHL 83 (294)
Q Consensus 70 i~~Adliv~~G~~~ 83 (294)
-.+||.+ +=|.||
T Consensus 72 ~~g~dAi-hPGYGF 84 (447)
T PRK05586 72 LTGAQAI-HPGFGF 84 (447)
T ss_pred HHCCCEE-ECCCCH
T ss_conf 8499899-718553
No 108
>PRK13601 putative ribosomal protein L7Ae-like; Provisional
Probab=49.02 E-value=20 Score=16.39 Aligned_cols=50 Identities=8% Similarity=0.104 Sum_probs=38.2
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHH---HHHHHHCCCEEEEEECCCCCC
Q ss_conf 99999976201697189982789979999---999982993444320123787
Q gi|254780537|r 221 MMRHAINQMRSHKIKFIFSESTNSDQPAK---QVAYETNASYGGVLYVDSLSK 270 (294)
Q Consensus 221 ~l~~~~~~ik~~~v~~if~e~~~~~~~~~---~ia~e~~~~~~~~~~~d~l~~ 270 (294)
..++..+.+++.+++.+|.-....++..+ .++++.++++..+.++.-||.
T Consensus 13 G~KQT~KAl~~g~a~~V~vA~DAD~~v~~~v~~lc~e~~VpV~~VdsMkeLGk 65 (84)
T PRK13601 13 GAKQTLKAIMNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKIVYVDTMKELGV 65 (84)
T ss_pred CHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf 38999999974983389998168688999999999973998698455998851
No 109
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=48.80 E-value=21 Score=16.37 Aligned_cols=75 Identities=23% Similarity=0.208 Sum_probs=44.9
Q ss_pred HHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEE--CCCCCHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf 9999985189148999626889801202271245776037899998--876106899999742355752111237420
Q gi|254780537|r 34 GDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCN--GLHLEETYMKYFTNLKKGTKIITVTDGINP 109 (294)
Q Consensus 34 ~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~--G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~ 109 (294)
...+++|--.+.+...+ |.-.=|+....+..--..+.+||++|.- ...+..++.++.....++..++.++.|++.
T Consensus 34 ~~~~~~In~~~~n~~yl-p~i~L~~nI~~t~dl~~~l~~ad~iiiavPs~~~~~~l~~i~~~i~~~~~li~~tKGle~ 110 (325)
T PRK00094 34 PEHAAEINTDRENPRYL-PGIKLPDNLRATSDLAEALADADLILVAVPSHAFREVLKQLKPLLRPDAPIVWATKGIEA 110 (325)
T ss_pred HHHHHHHHHCCCCCCCC-CCCCCCCCEEEECCHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEECCEEC
T ss_conf 99999999649886568-978589983897899999837984999457699999999998646899749997655624
No 110
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family; InterPro: IPR010187 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity acting on X-H and Y-H to form an X-Y bond with a disulfide as acceptor, 0030700 glycine reductase complex.
Probab=48.60 E-value=18 Score=16.79 Aligned_cols=177 Identities=7% Similarity=0.056 Sum_probs=97.4
Q ss_pred EECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHCCCC-CCCCCCCC
Q ss_conf 9752899999985189148999626889801202271245776037899998876106899-999742355-75211123
Q gi|254780537|r 28 SSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYM-KYFTNLKKG-TKIITVTD 105 (294)
Q Consensus 28 ~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~-~~~~~~~~~-~~~i~~~~ 105 (294)
+|.-...-+++.+-|+.++.+..+|--... +| ..-++.|++|.+-+...+|.=|.-. +.++++... --..++ +
T Consensus 185 ~s~R~V~ML~KKL~GEEF~TE~P~P~~D~V---~~-~~ai~d~sKA~IA~VT~GGIVP~~NPDrI~SsSA~kyG~YDi-~ 259 (433)
T TIGR01918 185 GSERAVDMLVKKLKGEEFQTEYPMPVFDRV---EP-AAAIKDLSKAKIAVVTSGGIVPKDNPDRIESSSASKYGKYDI-T 259 (433)
T ss_pred HHHHHHHHHHHHCCCCCEECCCCCCCCCCC---CC-CCCHHHHCCCEEEEEECCCEECCCCCCCCCCCCCCCCCCCCC-H
T ss_conf 578999998743068620026888733620---13-630222023328998407543588878300122233665231-0
Q ss_pred CCCHHHHHHCCCCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 7420222100123346301112-213567899999999986431888999999899863014553378998863078447
Q gi|254780537|r 106 GINPIGVSEDTSVDSEPNPHAW-MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEK 184 (294)
Q Consensus 106 ~i~~~~~~~~~~~~~~~dpH~W-ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~ 184 (294)
+++.+........|+++||-.= -||+.. +-+| -|.+++.+ -++..
T Consensus 260 g~~~L~~~~~~T~H~G~DP~~A~~dp~~v-----------~P~D----------------~LR~~EKE--G~IG~----- 305 (433)
T TIGR01918 260 GLDRLEEEVYETAHGGFDPAYANADPDRV-----------VPVD----------------VLRDLEKE--GKIGE----- 305 (433)
T ss_pred HHHHHCCCCCEEEECCCCCHHHCCCCCEE-----------ECHH----------------HHHHHHCC--CCCCC-----
T ss_conf 35420356612430577802104888756-----------0166----------------76312127--84031-----
Q ss_pred CEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHH-HHHHHHCCCCCEEEEEECCCC------HHHHHHHHHHHCC
Q ss_conf 369982665214577529728872268864000789999-999762016971899827899------7999999998299
Q gi|254780537|r 185 RWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMR-HAINQMRSHKIKFIFSESTNS------DQPAKQVAYETNA 257 (294)
Q Consensus 185 ~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~-~~~~~ik~~~v~~if~e~~~~------~~~~~~ia~e~~~ 257 (294)
.|.||=..-|- ...+.++++++ |+...+++.+|..++.-+... ...++.| +..|+
T Consensus 306 --------lh~YFYsTvG~---------GT~~~~s~~~AkE~~~~L~~~~VDaVIlTST~GTCTRCGATMVKEI-ERaG~ 367 (433)
T TIGR01918 306 --------LHKYFYSTVGN---------GTTVAESKQFAKEFVKELLEGGVDAVILTSTKGTCTRCGATMVKEI-ERAGI 367 (433)
T ss_pred --------EEEEEEECCCC---------CHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHH-HHCCC
T ss_conf --------57677412477---------3557878889999999998279888998168885544556200012-31698
Q ss_pred CEEE
Q ss_conf 3444
Q gi|254780537|r 258 SYGG 261 (294)
Q Consensus 258 ~~~~ 261 (294)
|++.
T Consensus 368 PvV~ 371 (433)
T TIGR01918 368 PVVH 371 (433)
T ss_pred CEEE
T ss_conf 7476
No 111
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase; InterPro: IPR004530 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases . This family describes the mitochondrial phenylalanyl-tRNA synthetases. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases.; GO: 0000166 nucleotide binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006432 phenylalanyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=47.85 E-value=20 Score=16.47 Aligned_cols=28 Identities=25% Similarity=0.173 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 2022712457760378999988761068
Q gi|254780537|r 59 SYQVTSADAIKIQNADLILCNGLHLEET 86 (294)
Q Consensus 59 ~ye~tp~d~~~i~~Adliv~~G~~~E~~ 86 (294)
..|.--..+.+..++|+++-+=+-+|-+
T Consensus 156 FHQ~~Ga~~~~~TK~~~~~~~P~y~E~~ 183 (460)
T TIGR00469 156 FHQADGAAVRKVTKDDLFVKEPGYLEKI 183 (460)
T ss_pred EECCCCCEEHHHHHHHHCCCCCCHHHHH
T ss_conf 1426762121002344304687401245
No 112
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=47.52 E-value=21 Score=16.24 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=54.2
Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 89988630784473699826652145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r 172 PLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV 251 (294)
Q Consensus 172 ~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i 251 (294)
+.+.+++. .+..+=..||-|-|+- .| .--.|.-++.=.+.+=...|.|+|+||..++-..-.+
T Consensus 228 rLk~QL~~---~gi~Vd~~hPLfVYLP--CG------------VGG~PGGVafGLK~~fGd~VhcfFaEPthsPcmllG~ 290 (404)
T cd06447 228 RLKAQLAE---LGIKVDAEHPLFVYLP--CG------------VGGAPGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGM 290 (404)
T ss_pred HHHHHHHH---CCCEECCCCCEEEEEC--CC------------CCCCCHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH
T ss_conf 99999998---2973369987189963--78------------7876058888799882484389984787567899988
Q ss_pred HHHHCCCEEEE-EECCCCCCCCC
Q ss_conf 99829934443-20123787778
Q gi|254780537|r 252 AYETNASYGGV-LYVDSLSKPDG 273 (294)
Q Consensus 252 a~e~~~~~~~~-~~~d~l~~~~~ 273 (294)
+....-++.+. +-+|+.+..++
T Consensus 291 ~Tglhd~isV~D~Gldn~T~ADG 313 (404)
T cd06447 291 ATGLHDKISVQDIGIDNRTAADG 313 (404)
T ss_pred HHCCCCCCCEEECCCCCCCCCCC
T ss_conf 75688898534216777645556
No 113
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=47.52 E-value=21 Score=16.24 Aligned_cols=148 Identities=12% Similarity=0.168 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC----HHHHHHC
Q ss_conf 213567899999999986431-8889-999998998630145533789988630784473699826652----1457752
Q gi|254780537|r 128 MSLTNAMIYIENIRKALTALD-PSNA-KKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL----VYLAEDF 201 (294)
Q Consensus 128 ldp~~~~~~a~~I~~~L~~~d-P~~~-~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af----~Y~~~~y 201 (294)
+-+++.......|++.+..-. |+.. +.+++....+...+. +++..+. .+|.++..-+.+ .-|.++.
T Consensus 238 ~Gl~~t~~~l~~la~~~g~~~~~~~~e~~I~~er~~l~d~l~----d~~~~l~----Gkrvai~~~~~~~~~l~~~l~El 309 (410)
T cd01968 238 YGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPELA----PYRARLE----GKKAALYTGGVKSWSLVSALQDL 309 (410)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHC----CCEEEEECCCHHHHHHHHHHHHC
T ss_conf 786999999999999838984024568999999999999999----9999853----98899964846889999999977
Q ss_pred CCEEEEECCCCCCCC---------------CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECC
Q ss_conf 972887226886400---------------07899999997620169718998278997999999998299344432012
Q gi|254780537|r 202 GFKSLYLWPINSDSE---------------RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVD 266 (294)
Q Consensus 202 Gl~~~~~~~~~~~~e---------------ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d 266 (294)
|++++.....+...+ ..-.+..++.+.+++.++..++..+ --+.+|+..|+|...... +
T Consensus 310 Gm~vv~~~~~~~~~~~~~~~~~~~~~~~~vi~d~d~~el~~~i~~~~~Dliig~s-----~~~~~a~rlGiP~~~~~~-~ 383 (410)
T cd01968 310 GMEVVATGTQKGTKEDYERIKELLGEGTVIVDDANPRELKKLLKEKKADLLVAGG-----KERYLALKLGIPFCDINH-E 383 (410)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEEECC-----CHHHHHHHHCCCEEEECC-C
T ss_conf 9989998157898889999998559888898489999999998656999999577-----324889980898898037-7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 3787778868999999999999986209
Q gi|254780537|r 267 SLSKPDGPAPTYLDLLRFSLTKIVDTLF 294 (294)
Q Consensus 267 ~l~~~~~~~~~Y~~~m~~N~~~l~~aL~ 294 (294)
....--.|-+.| +-++.|.+|||
T Consensus 384 ----~~~~~~GY~G~~-~l~~~i~nai~ 406 (410)
T cd01968 384 ----RKHPYAGYEGML-NFAKEVDLAVN 406 (410)
T ss_pred ----CCCCEEEHHHHH-HHHHHHHHHHC
T ss_conf ----677733175199-99999999862
No 114
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=47.50 E-value=21 Score=16.24 Aligned_cols=14 Identities=7% Similarity=0.105 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHHCCCE
Q ss_conf 9799999999829934
Q gi|254780537|r 244 SDQPAKQVAYETNASY 259 (294)
Q Consensus 244 ~~~~~~~ia~e~~~~~ 259 (294)
..|..+.+|. |.++
T Consensus 312 ~~KilEama~--g~Pv 325 (397)
T TIGR03087 312 QNKVLEAMAM--AKPV 325 (397)
T ss_pred CHHHHHHHHC--CCCE
T ss_conf 3579999976--9989
No 115
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2; InterPro: IPR011179 This group represents the bacterial and archaeal isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP isomerase catalyses the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), and is a key enzyme in the biosynthesis of isoprenoids via the mevalonate pathway. The bacterial and archaeal IPP isomerase (type 2 enzyme) differs from that found in eukaryotes (type 1 enzyme), and requires NADPH, magnesium, and FMN for activity , .; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0010181 FMN binding, 0008299 isoprenoid biosynthetic process, 0005737 cytoplasm.
Probab=47.47 E-value=21 Score=16.24 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=47.4
Q ss_pred CCCCCCCCH-H-HHHHHHHHHCCCCCEEEEEECC--CCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 886400078-9-9999997620169718998278--99799999999829934443201237877788689999999
Q gi|254780537|r 211 INSDSERSP-S-MMRHAINQMRSHKIKFIFSEST--NSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLR 283 (294)
Q Consensus 211 ~~~~~eps~-~-~l~~~~~~ik~~~v~~if~e~~--~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~ 283 (294)
+-||.+++. + =+.++.+..+.-+||+|.-|.. .|.+.++.|+ ++|++.+ | ++..++..-.+++.+|
T Consensus 164 vqpEGDr~F~~G~l~~i~~~~~~~~vPVIvKEvG~G~S~e~a~~L~-~~Gv~ai-----D-v~G~GGTswa~vE~~R 233 (349)
T TIGR02151 164 VQPEGDRNFSKGWLEKIAEICSAVSVPVIVKEVGFGISKEVAKLLA-DAGVKAI-----D-VSGAGGTSWAAVENYR 233 (349)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHH-HCCEEEE-----E-ECCCCCCCHHHHHHHH
T ss_conf 5799970156538999999996528987998215799889999998-7890088-----7-0787675599999887
No 116
>pfam01261 AP_endonuc_2 Xylose isomerase-like TIM barrel. This TIM alpha/beta barrel structure is found in xylose isomerase and in endonuclease IV (EC:3.1.21.2). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae.
Probab=47.24 E-value=22 Score=16.21 Aligned_cols=22 Identities=9% Similarity=0.043 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 0789999999762016971899
Q gi|254780537|r 217 RSPSMMRHAINQMRSHKIKFIF 238 (294)
Q Consensus 217 ps~~~l~~~~~~ik~~~v~~if 238 (294)
.|+.++.++++.+...++.++|
T Consensus 132 ~~~~~~~~l~~~v~~~~~~~~~ 153 (201)
T pfam01261 132 GYFEEALRLIEEVDSPNVGLCL 153 (201)
T ss_pred CCHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999999999864998655110
No 117
>PRK13835 conjugal transfer protein TrbH; Provisional
Probab=46.99 E-value=15 Score=17.32 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=16.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCE
Q ss_conf 9269999999998604643358828
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKV 25 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~ 25 (294)
|+|.+.++++.+.+.+|....+.++
T Consensus 1 mr~ll~~~i~a~~lsgCqta~dglt 25 (144)
T PRK13835 1 MRRLLAACILALLLSGCQTATDGLT 25 (144)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9559999999998640413688644
No 118
>pfam12262 Lipase_bact_N Bacterial virulence factor lipase N-terminal. This domain family is found in bacteria, and is typically between 258 and 271 amino acids in length. There are two conserved sequence motifs: DGT and DGWST. This family is the N-terminal region of bacterial virulence factor lipase. The N-terminal region contains a potential signalling sequence.
Probab=46.88 E-value=22 Score=16.18 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHH-CCCCCCCCCCEEEEECHH
Q ss_conf 92699999999986-046433588289997528
Q gi|254780537|r 1 MLRYFICLLFSYIP-MSASATTQKKVVLSSFSI 32 (294)
Q Consensus 1 M~r~~~~l~~~~~~-~~~~~~~~~~~Vv~s~~p 32 (294)
|||+|+.++++-.+ +++|+.........+..|
T Consensus 1 MKk~~l~~~i~SAL~LaGCg~~s~~~g~~~~~~ 33 (269)
T pfam12262 1 MKKKFLALLLASALLLAGCGDDTETSGTPTIDP 33 (269)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf 924799999999864111579965667755464
No 119
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=46.76 E-value=22 Score=16.16 Aligned_cols=30 Identities=17% Similarity=0.026 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 643188899999989986301455337899
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLK 174 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~ 174 (294)
.-+.|..+-......+++.-+++.-.+...
T Consensus 275 ~~~sp~da~L~lRGLrTL~lRm~r~~~nA~ 304 (431)
T PRK08248 275 AALSPFNAFLLLQGLETLHLRMERHSENAL 304 (431)
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 778806779997268979999999998899
No 120
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Probab=46.34 E-value=22 Score=16.12 Aligned_cols=88 Identities=10% Similarity=0.100 Sum_probs=43.6
Q ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHCCHHHHH----------HHHHHHHHCCCCCC-C
Q ss_conf 30111221-35678999999999864318889999998998----630145533----------78998863078447-3
Q gi|254780537|r 122 PNPHAWMS-LTNAMIYIENIRKALTALDPSNAKKYELNARE----YSEKIRNSI----------LPLKTRIEKVDPEK-R 185 (294)
Q Consensus 122 ~dpH~Wld-p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~----~~~~l~~l~----------~~~~~~~~~~p~~~-~ 185 (294)
..||++.. |.-.-.+-+.|.+.+.+.-+..+..|+--++. +...+.... --+++..+..- ++ +
T Consensus 278 ~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~lG-gri~ 356 (613)
T COG1022 278 VRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDALG-GRIR 356 (613)
T ss_pred HCCEEEEECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHC-CCEE
T ss_conf 299399632589999999999998746166899999999988999886402557762023345889999999717-8479
Q ss_pred EEEEE----CCCCHHHHHHCCCEEEEECC
Q ss_conf 69982----66521457752972887226
Q gi|254780537|r 186 WFVTS----EGCLVYLAEDFGFKSLYLWP 210 (294)
Q Consensus 186 ~~v~~----H~af~Y~~~~yGl~~~~~~~ 210 (294)
..++. -+...+|.+..|+.+.--.|
T Consensus 357 ~~~sGGa~l~~~~~~f~~~lGi~i~eGYG 385 (613)
T COG1022 357 YALSGGAPLSPELLHFFRSLGIPILEGYG 385 (613)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEEEEC
T ss_conf 99956875988999999976977578854
No 121
>pfam09171 DUF1886 Domain of unknown function (DUF1886). This domain is predominantly found in the Archaeal protein N-glycosylase/DNA lyase.
Probab=46.22 E-value=22 Score=16.11 Aligned_cols=116 Identities=14% Similarity=-0.002 Sum_probs=61.2
Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHH--HHHHHHHHHCCCC--C
Q ss_conf 99863014553378998863078447369982665214577529728872268864000789--9999997620169--7
Q gi|254780537|r 159 AREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPS--MMRHAINQMRSHK--I 234 (294)
Q Consensus 159 ~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~--~l~~~~~~ik~~~--v 234 (294)
...|...+..+-..+...+.+ +...+++|-.---|+|.++.-|-+.... |+.=|=|- +++.+....-.-+ .
T Consensus 115 ~~~yy~~m~~l~~~La~~l~~-k~~~KTiVFAvKM~gYa~r~~~~~~~~~----p~eIpIPvD~Ri~~~T~~~~~~~~~~ 189 (246)
T pfam09171 115 NELYYENLEELLEALAKILGA-KPESKTVVFAVKMFGYAYRAAFGVFRPY----PMEIPIPVDYRIAKLTKKSGLVDAPP 189 (246)
T ss_pred HHHHHCCHHHHHHHHHHHHCC-CCCCCEEEEHHHHHHHHHHHHCCCCCCC----CCCCCCCCHHHHHHHHHHHHCCCCCH
T ss_conf 136541899999999999689-9875635445998999999956877789----87899962399999999873235873
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHH
Q ss_conf 189982789979999999982993444320123787778868999999
Q gi|254780537|r 235 KFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLL 282 (294)
Q Consensus 235 ~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m 282 (294)
...........+....+|+++|+| .+.+|++-.--+....+.+..
T Consensus 190 ~~~~~~~e~~~~~W~~Va~~~gIP---plhiDsilW~~g~~~~~~~~~ 234 (246)
T pfam09171 190 EEAVARYEEVQEFWNRVARESGIP---PLHLDSILWLLGGAIDVGENI 234 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHCCCCHHHHHH
T ss_conf 665420277999999987355998---412257898716640352315
No 122
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase; InterPro: IPR013445 This entry contains CDP-glucose 4,6-dehydratases from a variety of Gram-negative and Gram-positive bacteria. Members are typically encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate CDP-D-glucose. This is used by the proteins in this entry to produce CDP-4-keto-6-deoxyglucose..
Probab=46.20 E-value=22 Score=16.11 Aligned_cols=68 Identities=9% Similarity=0.134 Sum_probs=41.7
Q ss_pred CCCEEEEECCCC-----HHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCC-CEEEEEECCCCHHHHHHH
Q ss_conf 473699826652-----145775297288722688640007899999997620169-718998278997999999
Q gi|254780537|r 183 EKRWFVTSEGCL-----VYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHK-IKFIFSESTNSDQPAKQV 251 (294)
Q Consensus 183 ~~~~~v~~H~af-----~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~-v~~if~e~~~~~~~~~~i 251 (294)
++|+|||.|-.| .+|....|-++.|.. +.|...|+-=++.++.+.++..= -..+|.+=....++.+.+
T Consensus 4 gKkVl~TGHTGFKGSWL~lWL~~lGA~V~GYS-L~P~t~PnlFe~l~l~~~~~~~Wyf~~~~gDIrD~~~L~~~~ 77 (361)
T TIGR02622 4 GKKVLITGHTGFKGSWLSLWLLELGAEVAGYS-LDPPTSPNLFELLNLAKKIKDSWYFSSIFGDIRDAAKLEKAI 77 (361)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHCCCEEEEEE-CCCCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCHHHHHHHH
T ss_conf 86789845786425589999984796798971-688788405557525424323505542330323278999999
No 123
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=45.92 E-value=23 Score=16.08 Aligned_cols=39 Identities=13% Similarity=0.128 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHCCCCCEEEEEECCC---CHHHHHHHHHHHC
Q ss_conf 78999999976201697189982789---9799999999829
Q gi|254780537|r 218 SPSMMRHAINQMRSHKIKFIFSESTN---SDQPAKQVAYETN 256 (294)
Q Consensus 218 s~~~l~~~~~~ik~~~v~~if~e~~~---~~~~~~~ia~e~~ 256 (294)
..+.+.+++++.++-++++=+.|-+. +...+..+|+..-
T Consensus 289 ~~~~i~~~~~l~~~lglP~~L~elGv~e~~~e~l~~iAe~A~ 330 (366)
T PRK09423 289 PKEEIEEVIDFCHAVGLPTTLADLGLKEDSDEELRKVAEAAC 330 (366)
T ss_pred CHHHHHHHHHHHHHCCCCCCHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 399999999999987999988995999998899999999982
No 124
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional
Probab=45.59 E-value=23 Score=16.05 Aligned_cols=136 Identities=15% Similarity=0.111 Sum_probs=60.9
Q ss_pred HHHHCCCCCC---CCCCEEEEECHHHHHHHHHHC---CC--EEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCC
Q ss_conf 9986046433---588289997528999999851---89--148999626889801202271245776037899998876
Q gi|254780537|r 11 SYIPMSASAT---TQKKVVLSSFSIIGDITQNIA---KD--LVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLH 82 (294)
Q Consensus 11 ~~~~~~~~~~---~~~~~Vv~s~~pl~~iv~~I~---gd--~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~ 82 (294)
.+++++|+.. ...++|-+|-.|..++.+.+. .+ ..+|....=. | | ..|.. +|.+-|+= .|-..
T Consensus 17 ~l~l~gCg~~~~~~~~ikVG~~~gp~~ei~e~~~~~~~ek~G~~veiv~Fs--D---y-~~pN~--AL~~G~iD-aN~fQ 87 (271)
T PRK11063 17 SLALVGCGQDEKDPNHIKVGVIVGAEQQVAEVAQKVAKEKYGLDVELVTFN--D---Y-VLPNE--ALSKGDID-ANAFQ 87 (271)
T ss_pred HHHHCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEEC--C---C-HHHHH--HHHCCCCC-HHHHH
T ss_conf 997500589856798189984689879999998888886079768999936--8---3-21558--98679844-23455
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCC-CCCHH----------HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 10689999974235575211123-74202----------22100123346301112213567899999999-98643188
Q gi|254780537|r 83 LEETYMKYFTNLKKGTKIITVTD-GINPI----------GVSEDTSVDSEPNPHAWMSLTNAMIYIENIRK-ALTALDPS 150 (294)
Q Consensus 83 ~E~~~~~~~~~~~~~~~~i~~~~-~i~~~----------~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~-~L~~~dP~ 150 (294)
..+|+....++.+ ...+.+.. .+.++ ..-.++..=. +=-||.|..+....+.+ .|++++|.
T Consensus 88 H~~yL~~~nk~~g--~~L~~v~~~~~~P~glYS~K~ksl~elp~Ga~Ia-----IPND~sN~~RAL~lL~~aGLIkLk~~ 160 (271)
T PRK11063 88 HKPYLDQQIKDRG--YKLVAVGNTFVYPIAGYSKKIKSLDELQDGSQVA-----VPNDPTNLGRSLLLLQKVGLIKLKDG 160 (271)
T ss_pred CHHHHHHHHHHCC--CCEEEEEEEEEEEEEEEECCCCCHHHCCCCCEEE-----ECCCCCHHHHHHHHHHHCCCEEECCC
T ss_conf 7999999999779--9579986677841586423658864756999998-----04885609999999998898897799
Q ss_pred HH-----HHHHHHHHHH
Q ss_conf 89-----9999989986
Q gi|254780537|r 151 NA-----KKYELNAREY 162 (294)
Q Consensus 151 ~~-----~~y~~N~~~~ 162 (294)
.. ..+.+|-+.+
T Consensus 161 ~~~~~T~~DI~~Npk~l 177 (271)
T PRK11063 161 VGLLPTVLDIVENPKNL 177 (271)
T ss_pred CCCCCCHHHHHCCCCCC
T ss_conf 99878966885488774
No 125
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=45.54 E-value=23 Score=16.04 Aligned_cols=148 Identities=14% Similarity=0.184 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEE---------CCC
Q ss_conf 01112213567899999999986431888999999899863014553378998863078447369982---------665
Q gi|254780537|r 123 NPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTS---------EGC 193 (294)
Q Consensus 123 dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~---------H~a 193 (294)
+-++|-|. ++.++++++.+.+. +.+++..++++...+++++.-+.-......+.++ ..-
T Consensus 148 ~~n~~~S~---~~n~e~Lg~IFgkE---------~eAk~~~~~id~~i~~~k~~a~~~~~t~m~il~ngGkisafGp~SR 215 (320)
T COG4607 148 TANLIEST---KQNIETLGKIFGKE---------EEAKELLADIDASIAAAKEKAAGKGKTALVILVNGGKISAFGPSSR 215 (320)
T ss_pred HHHHHHHH---HHHHHHHHHHHCCH---------HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCCC
T ss_conf 67889999---99999999985840---------8899999879999999999864169805999944970455448775
Q ss_pred CHHHHHHCCCEEEE--ECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE-C-------CCCHH--HHHHHHHHHCC-CEE
Q ss_conf 21457752972887--226886400078999999976201697189982-7-------89979--99999998299-344
Q gi|254780537|r 194 LVYLAEDFGFKSLY--LWPINSDSERSPSMMRHAINQMRSHKIKFIFSE-S-------TNSDQ--PAKQVAYETNA-SYG 260 (294)
Q Consensus 194 f~Y~~~~yGl~~~~--~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e-~-------~~~~~--~~~~ia~e~~~-~~~ 260 (294)
|+.+-+.+|++-+. +...+||...|. +.|++.|..+||+- . ..+.+ .=+.+.+++++ +-.
T Consensus 216 fg~ihd~~G~~pvd~~~~~s~HGq~VSf-------EyI~e~NPD~lfViDR~~aig~~~~~a~qvldN~lv~~t~A~k~g 288 (320)
T COG4607 216 FGWIHDDLGFTPVDENIKNSNHGQPVSF-------EYIKEKNPDWLFVIDRGAAIGEEGSAAKQVLDNELVANTKAWKNG 288 (320)
T ss_pred CEEEECCCCCCCCCCCCCCCCCCCEECH-------HHHHHHCCCEEEEEECCCHHCCCCHHHHHHHCCHHHHHCCHHHCC
T ss_conf 3133201288832333444678872029-------999751998799971740314776167776401988733141068
Q ss_pred EEEECCCCCCCCC--CCCCHHHHHHHHHHHHHHHC
Q ss_conf 4320123787778--86899999999999998620
Q gi|254780537|r 261 GVLYVDSLSKPDG--PAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 261 ~~~~~d~l~~~~~--~~~~Y~~~m~~N~~~l~~aL 293 (294)
.+.++|+-..-.. .-.+|.+|| +.+++++
T Consensus 289 ~I~yLdp~~wy~aggG~~s~~~~i----~~~~~a~ 319 (320)
T COG4607 289 QIIYLDPDTWYIAGGGLESLTQMI----EQVKAAF 319 (320)
T ss_pred EEEEECHHHHHHHCCCHHHHHHHH----HHHHHHH
T ss_conf 389977389634356399999999----9999863
No 126
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry contains a number of enzyme families: Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding.
Probab=45.32 E-value=23 Score=16.02 Aligned_cols=137 Identities=13% Similarity=0.190 Sum_probs=78.8
Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHCCCC---CCCCCCCCCCCHHHH-----------H---------HCCCC----
Q ss_conf 45776037899998876106899999742355---752111237420222-----------1---------00123----
Q gi|254780537|r 66 DAIKIQNADLILCNGLHLEETYMKYFTNLKKG---TKIITVTDGINPIGV-----------S---------EDTSV---- 118 (294)
Q Consensus 66 d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~---~~~i~~~~~i~~~~~-----------~---------~~~~~---- 118 (294)
|=-+|++|+.++|+-.+|+. |.+.++.+... .+.+.+.|||=.++. . .|-|.
T Consensus 134 DG~RLtkA~k~~y~H~dm~D-L~~~l~e~~~~Gqy~~~l~vTDGVFSMDGdvApLp~iVE~Ae~Yda~~yVDDAHGsGVl 212 (392)
T TIGR01825 134 DGLRLTKAKKKIYKHVDMDD-LERVLRENVEEGQYKKKLIVTDGVFSMDGDVAPLPEIVELAEKYDALVYVDDAHGSGVL 212 (392)
T ss_pred HCCCCCCCCEEEEECCCHHH-HHHHHHHCCCCCCCCCEEEEECCEEECCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCC
T ss_conf 04223788568984598458-99999716033754436899665042567878873233463245957998633466444
Q ss_pred -------------C-CC--------------------------------CCHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------------3-46--------------------------------301112---2135678999999999864318
Q gi|254780537|r 119 -------------D-SE--------------------------------PNPHAW---MSLTNAMIYIENIRKALTALDP 149 (294)
Q Consensus 119 -------------~-~~--------------------------------~dpH~W---ldp~~~~~~a~~I~~~L~~~dP 149 (294)
+ +. -=|.++ +.|.-....+++|..- ..+|
T Consensus 213 Ge~GrGtV~HFGL~y~~v~~qvGTLSKA~GvvGGY~AG~~~lidyL~~~aRPFLFSta~~Pa~~~A~~~Av~~l--~~~~ 290 (392)
T TIGR01825 213 GEKGRGTVKHFGLEYDKVDIQVGTLSKAIGVVGGYVAGSKELIDYLKARARPFLFSTALPPAVVAALIEAVDVL--QESP 290 (392)
T ss_pred CCCCCCEEECCCCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH--CCCC
T ss_conf 77887135303754164678855522322256642348889999998628986012578807899999999987--0793
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC-----HHHHHHCCCEEEEEC
Q ss_conf 889999998998630145533789988630784473699826652-----145775297288722
Q gi|254780537|r 150 SNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL-----VYLAEDFGFKSLYLW 209 (294)
Q Consensus 150 ~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af-----~Y~~~~yGl~~~~~~ 209 (294)
+.-+-...|++-|++.|..|==..-. +..|-. +++.+.... .-|.++||+=..++.
T Consensus 291 ~l~~kLW~Nt~ylk~~L~~LGydl~~--S~tPIt--Pv~~Gde~~A~efS~rL~~~yGvFa~siv 351 (392)
T TIGR01825 291 ELMEKLWDNTRYLKAGLSKLGYDLGE--SETPIT--PVLIGDEKVAQEFSRRLLDEYGVFAQSIV 351 (392)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCC--CEEECCCHHHHHHHHHHHHHCCEEEEEEE
T ss_conf 14777678899999876761641147--668612--45876515689999987775290899842
No 127
>PRK12450 foldase protein PrsA; Reviewed
Probab=45.32 E-value=19 Score=16.58 Aligned_cols=30 Identities=13% Similarity=0.188 Sum_probs=14.1
Q ss_pred CHHHHHHHH--HHHHHCCCCCC-CCCCEEEEEC
Q ss_conf 926999999--99986046433-5882899975
Q gi|254780537|r 1 MLRYFICLL--FSYIPMSASAT-TQKKVVLSSF 30 (294)
Q Consensus 1 M~r~~~~l~--~~~~~~~~~~~-~~~~~Vv~s~ 30 (294)
|+|+++.++ ++++.+++|++ ++.-.|+++-
T Consensus 4 mKK~~~~~~~~~svl~LaAC~s~~~~~~v~t~k 36 (309)
T PRK12450 4 MNKLITGVVTLATVVTLSACQSSHNNTKLVSMK 36 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 999999999999999998605899983689835
No 128
>PRK13883 conjugal transfer protein TrbH; Provisional
Probab=45.22 E-value=23 Score=16.01 Aligned_cols=18 Identities=11% Similarity=0.078 Sum_probs=11.6
Q ss_pred CHHHHHHHHHHHHHCCCC
Q ss_conf 926999999999860464
Q gi|254780537|r 1 MLRYFICLLFSYIPMSAS 18 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~ 18 (294)
|+|++.++++.+.+.+|.
T Consensus 1 MrK~~~~all~laL~gCA 18 (156)
T PRK13883 1 MRKILSLALLALALGGCA 18 (156)
T ss_pred CHHHHHHHHHHHHHHCCC
T ss_conf 926899999999970331
No 129
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=45.22 E-value=23 Score=16.01 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=43.3
Q ss_pred CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC----------CCCEEEEEECCCCHHHHHHHHH
Q ss_conf 736998266521457752972887226886400078999999976201----------6971899827899799999999
Q gi|254780537|r 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS----------HKIKFIFSESTNSDQPAKQVAY 253 (294)
Q Consensus 184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~----------~~v~~if~e~~~~~~~~~~ia~ 253 (294)
++.+++|.|.|. +..+..|++.++.++...||+ .+++ |++....+++-++.+.+
T Consensus 160 ~~iiIAYEPvWA---------------IGTG~~as~~~i~~~~~~Ir~~l~~~~~~~~~~i~-IlYGGSVn~~N~~~i~~ 223 (251)
T PRK00042 160 ANLVIAYEPVWA---------------IGTGKTATPEQAQEVHAFIRKVLAELYAEVAEKVR-ILYGGSVKPDNAAELFA 223 (251)
T ss_pred CCEEEEECCHHH---------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEEECCCCHHHHHHHHC
T ss_conf 535999675775---------------07999999999999999999999986052305753-88717789989999966
Q ss_pred HHCCC
Q ss_conf 82993
Q gi|254780537|r 254 ETNAS 258 (294)
Q Consensus 254 e~~~~ 258 (294)
.-++.
T Consensus 224 ~~~vD 228 (251)
T PRK00042 224 QPDID 228 (251)
T ss_pred CCCCC
T ss_conf 88999
No 130
>PRK03095 prsA peptidylprolyl isomerase; Reviewed
Probab=45.13 E-value=20 Score=16.40 Aligned_cols=57 Identities=11% Similarity=0.193 Sum_probs=28.8
Q ss_pred HHCCCEEEEECCCCCCCCCCHHHHH-HHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 7529728872268864000789999-9997620169718998278997999999998299344
Q gi|254780537|r 199 EDFGFKSLYLWPINSDSERSPSMMR-HAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG 260 (294)
Q Consensus 199 ~~yGl~~~~~~~~~~~~eps~~~l~-~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~ 260 (294)
-.||++++-+.... +...+-.+.+ ++.+.|...+.. ++.+-.+++..+-+..|+++-
T Consensus 209 t~~GyhIIk~~~k~-~k~~~~~~~K~~lk~~i~~~k~~----D~~~~~~vi~k~lkkanV~ik 266 (287)
T PRK03095 209 SQFGYHIIKVTDIK-EPEKSFEQSKADIKKELVQKKAQ----DGEFMNDLMMKEIKKADVKVD 266 (287)
T ss_pred ECCEEEEEEEEECC-CCCCCHHHHHHHHHHHHHHHHHH----CHHHHHHHHHHHHHHCCCCCC
T ss_conf 08835999984147-88999899999999999999864----769999999999997798615
No 131
>KOG1405 consensus
Probab=45.04 E-value=23 Score=15.99 Aligned_cols=37 Identities=22% Similarity=0.370 Sum_probs=19.2
Q ss_pred EECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 7226886400078999999976201697189982789
Q gi|254780537|r 207 YLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN 243 (294)
Q Consensus 207 ~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~ 243 (294)
.++....+...||.=++.+++..++++|.+|+-|.|.
T Consensus 279 PIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQT 315 (484)
T KOG1405 279 PIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQT 315 (484)
T ss_pred CHHCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEC
T ss_conf 1102578866898999999999986495899640000
No 132
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=44.75 E-value=24 Score=15.96 Aligned_cols=11 Identities=27% Similarity=0.456 Sum_probs=4.3
Q ss_pred HCCCCEEEEEC
Q ss_conf 60378999988
Q gi|254780537|r 70 IQNADLILCNG 80 (294)
Q Consensus 70 i~~Adliv~~G 80 (294)
+..||.++.+.
T Consensus 138 ~~~ad~ii~vS 148 (365)
T cd03809 138 LRRADAIITVS 148 (365)
T ss_pred HHHCCEEEECC
T ss_conf 99699999979
No 133
>PRK07503 methionine gamma-lyase; Provisional
Probab=44.58 E-value=24 Score=15.94 Aligned_cols=30 Identities=10% Similarity=0.149 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 643188899999989986301455337899
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLK 174 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~ 174 (294)
.-+.|.++-......+++.-+++.-.+...
T Consensus 245 ~~lsP~da~L~lRGL~TL~lRm~~~~~nA~ 274 (403)
T PRK07503 245 AVLSPHDASLLMRGLKTLALRMDRHCANAQ 274 (403)
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 868868889986467759999999999999
No 134
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=44.51 E-value=24 Score=15.94 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=20.4
Q ss_pred HHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEE
Q ss_conf 89999998518914899962688980120227124577603789999
Q gi|254780537|r 32 IIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILC 78 (294)
Q Consensus 32 pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~ 78 (294)
....+++.+.....+|+.+...... ........+.|++-.
T Consensus 18 ~~~~L~~~L~~~Gh~v~v~~~~~~~-------~~~~~~~~~~dvvh~ 57 (365)
T cd03825 18 AAYRLHRALQAAGVDSTMLVQEKKA-------LISKIEIINADIVHL 57 (365)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCC-------HHHHHHHCCCCEEEE
T ss_conf 9999999999779908999926984-------777665528998998
No 135
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=44.15 E-value=24 Score=15.90 Aligned_cols=201 Identities=13% Similarity=0.168 Sum_probs=98.2
Q ss_pred EEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCH
Q ss_conf 48999626889801202271245776037899998876106899999742355752111237420222100123346301
Q gi|254780537|r 45 VTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNP 124 (294)
Q Consensus 45 v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dp 124 (294)
++|..+++.|. +-.+++.+.+|++-+..+...-..+.+.+++. .+...+.. +|
T Consensus 180 i~v~~~~~~~~-------~~~~i~~~~~A~~nl~~~~~~~~~~a~~l~~~-~g~p~~~~-------------------~p 232 (399)
T cd00316 180 IRVNALFDGGT-------TVEELRELGNAKLNLVLCRESGLYLARYLEEK-YGIPYILI-------------------NP 232 (399)
T ss_pred CCEEEECCCCC-------CHHHHHHCCCCCEEEEECHHHHHHHHHHHHHH-HCCCEEEC-------------------CC
T ss_conf 90589769999-------97999752635389996765799999999986-09855605-------------------88
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH----HHHHH
Q ss_conf 11221356789999999998643188899999989986301455337899886307844736998266521----45775
Q gi|254780537|r 125 HAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV----YLAED 200 (294)
Q Consensus 125 H~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~----Y~~~~ 200 (294)
+-+++.......|++.+..-.+ -.+.+.+..+.+...+.+ ++..+. .+|.++...+... .|.++
T Consensus 233 ---~G~~~T~~~l~~i~~~~g~~~~-~~~~i~~e~~~~~~~~~~----~~~~l~----gkrv~i~~~~~~~~~l~~~l~e 300 (399)
T cd00316 233 ---IGLEATDAFLRKLAELFGIEKE-VPEVIARERARLLDALAD----YHEYLG----GKKVAIFGDGDLLLALARFLLE 300 (399)
T ss_pred ---CCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHH----HHHHHC----CCEEEEECCCHHHHHHHHHHHH
T ss_conf ---7869999999999998489864-489999999999999999----988745----9889998882789999999998
Q ss_pred CCCEEEEECCCCCCC---------------CCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 297288722688640---------------00789999999762016971899827899799999999829934443201
Q gi|254780537|r 201 FGFKSLYLWPINSDS---------------ERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYV 265 (294)
Q Consensus 201 yGl~~~~~~~~~~~~---------------eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~ 265 (294)
.|++++.+....+.. ..-..++.++.+.+++.+...++.. ...+.+++..+++...+.+.
T Consensus 301 lG~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~d~~~~~~~i~~~~pDliig~-----~~~~~~a~~~~ip~~~~~~p 375 (399)
T cd00316 301 LGMEVVAAGTTFGHKADYERREELLGEGTEVVDDGDLEELEELIRELKPDLIIGG-----SKGRYIAKKLGIPLVRIGFP 375 (399)
T ss_pred CCCEEEEEEEECCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCEEEEC-----CHHHHHHHHCCCCEEECCCC
T ss_conf 7996779998469847788999741799889988999999999871699999979-----44789999849988976785
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 23787778868999999999999986209
Q gi|254780537|r 266 DSLSKPDGPAPTYLDLLRFSLTKIVDTLF 294 (294)
Q Consensus 266 d~l~~~~~~~~~Y~~~m~~N~~~l~~aL~ 294 (294)
.. ..+--.|-++ .+-++.+.++|+
T Consensus 376 --~~--~~p~~Gy~G~-~~l~~~i~n~l~ 399 (399)
T cd00316 376 --IH--RRPYVGYEGA-LNLAEEIANALL 399 (399)
T ss_pred --CC--CCCCCCHHHH-HHHHHHHHHHHC
T ss_conf --34--6741618879-999999998539
No 136
>pfam04788 DUF620 Protein of unknown function (DUF620). Family of uncharacterized proteins.
Probab=43.67 E-value=4.7 Score=20.69 Aligned_cols=103 Identities=20% Similarity=0.238 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH
Q ss_conf 22135678999999999864318889999998998-----------6301455337899886307844736998266521
Q gi|254780537|r 127 WMSLTNAMIYIENIRKALTALDPSNAKKYELNARE-----------YSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV 195 (294)
Q Consensus 127 Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~-----------~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~ 195 (294)
|+-...++--..-++..|..+||...+.+=.|+.- |.-+|..--...+.+ .....=|.-|-.|+
T Consensus 70 w~~~hAakGp~RPLRR~lQGLDPr~tA~lF~~a~ciGEk~i~geDCFvLkl~a~~~~l~ar-----s~~~~EiirH~~~G 144 (242)
T pfam04788 70 WLGAHAAKGPPRPLRRALQGLDPRTTASLFANAQCIGEKKVNGEDCFVLKLDADPAVLSAR-----SDGPAEVIRHTLFG 144 (242)
T ss_pred CCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCHHHHHHC-----CCCCCEEEEEEEEC
T ss_conf 5435102489962678863898005776530141114222388531898740785665410-----37880699975201
Q ss_pred HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf 45775297288722688640007899999997620169718998278997999
Q gi|254780537|r 196 YLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPA 248 (294)
Q Consensus 196 Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~ 248 (294)
||.++-||=+.- + +.. |.. |+..+-..+|.|...++.+-
T Consensus 145 YFSQrtGLLv~l-E----DS~-----Ltr----iq~~g~~~vyWETt~~S~i~ 183 (242)
T pfam04788 145 YFSQRSGLLVRL-E----DSH-----LTR----IQSPGAEAVYWETTIESSLG 183 (242)
T ss_pred CCCCCCCCEEEE-E----ECC-----EEE----EECCCCCCEEEEECCCCCCC
T ss_conf 112123515555-3----040-----465----53389972688851102321
No 137
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=43.55 E-value=25 Score=15.84 Aligned_cols=75 Identities=12% Similarity=0.076 Sum_probs=47.4
Q ss_pred HHHHHCCCCCCCEEEEECCCCHH--HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 98863078447369982665214--5775297288722688640007899999997620169718998278997999999
Q gi|254780537|r 174 KTRIEKVDPEKRWFVTSEGCLVY--LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV 251 (294)
Q Consensus 174 ~~~~~~~p~~~~~~v~~H~af~Y--~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i 251 (294)
...+.....+...|+..||=||- ...-|-= ...+.. |...+..+.+.++.+..+.-|.+++...+....+.+..+
T Consensus 105 ~~a~~~~~~~~~~~vg~HPM~G~~~~~~lf~~-~~~vlt--p~~~~~~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~v 181 (279)
T COG0287 105 VEAMEKYLPGDVRFVGGHPMFGPEADAGLFEN-AVVVLT--PSEGTEKEWVEEVKRLWEALGARLVEMDAEEHDRVMAAV 181 (279)
T ss_pred HHHHHHHCCCCCEEEECCCCCCCCCCCCCCCC-CEEEEE--CCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHH
T ss_conf 99999746677707821899987431123379-679994--799987899999999999749889986888987899999
No 138
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=43.49 E-value=25 Score=15.83 Aligned_cols=85 Identities=18% Similarity=0.196 Sum_probs=50.8
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
Q ss_conf 78998863078447369982665214577529728872268864000789999999762016971899827899799999
Q gi|254780537|r 171 LPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQ 250 (294)
Q Consensus 171 ~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ 250 (294)
..++++++. .+..+=..||-|-|+-- | ..-.|..++.=.+.+=..+|.|+|+||..++-..-.
T Consensus 253 ~Rlk~Q~d~---~gi~vd~ehPLfVylPC--G------------VGGgPGGVafGLKl~fgd~VhcfFaEPthsPcMlLG 315 (443)
T COG3048 253 QRLKKQFDE---QGIVVDAEHPLFVYLPC--G------------VGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLG 315 (443)
T ss_pred HHHHHHHHH---CCCEECCCCCEEEEEEC--C------------CCCCCCHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf 999998986---48441688864999615--7------------787863154556766157438998368777077775
Q ss_pred HHHHHCCCEEEE-EECCCCCCCC
Q ss_conf 999829934443-2012378777
Q gi|254780537|r 251 VAYETNASYGGV-LYVDSLSKPD 272 (294)
Q Consensus 251 ia~e~~~~~~~~-~~~d~l~~~~ 272 (294)
+-....-++.+. +-.|+++..+
T Consensus 316 v~tGlHe~ISVqdiGidn~TaAD 338 (443)
T COG3048 316 VYTGLHEQISVQDIGIDNLTAAD 338 (443)
T ss_pred HHHCCCCCEEEEEECCCCCCCCC
T ss_conf 44142211135750556643345
No 139
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=43.47 E-value=25 Score=15.83 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=10.5
Q ss_pred HHHHHHHHCCCEEEEEEEE
Q ss_conf 9999998518914899962
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLV 51 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~li 51 (294)
...+++.++....+|+.+.
T Consensus 20 ~~~la~~L~~~Gh~V~v~t 38 (394)
T cd03794 20 TTELAEELVKRGHEVTVIT 38 (394)
T ss_pred HHHHHHHHHHCCCEEEEEE
T ss_conf 9999999997799799995
No 140
>TIGR01418 PEP_synth phosphoenolpyruvate synthase; InterPro: IPR006319 This family represents phosphoenolpyruvate synthase; also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. ; GO: 0008986 pyruvate water dikinase activity, 0006094 gluconeogenesis.
Probab=43.28 E-value=13 Score=17.66 Aligned_cols=56 Identities=13% Similarity=0.196 Sum_probs=31.4
Q ss_pred CCCCCCCCCEEEEECHHHHHH-HHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCH
Q ss_conf 464335882899975289999-9985189148999626889801202271245776037899998876106
Q gi|254780537|r 16 SASATTQKKVVLSSFSIIGDI-TQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEE 85 (294)
Q Consensus 16 ~~~~~~~~~~Vv~s~~pl~~i-v~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~ 85 (294)
+..-+++|-+|+.|+. .+ +.++-...+=||.+..| +|+| .+++|.-||+|=+|+..
T Consensus 405 g~~Ia~GkvkVi~~~~---e~k~~~~~~GdiLVT~mTDP-----DWeP------~MK~AsAIVTn~GG~Tc 461 (877)
T TIGR01418 405 GPGIASGKVKVILDLK---EMKVDKFEEGDILVTDMTDP-----DWEP------VMKRASAIVTNEGGRTC 461 (877)
T ss_pred CCCCCCCCCEEECCHH---HHCCCCCCCCCEEEECCCCC-----CCHH------HCCCCCEEEECCCCCHH
T ss_conf 6640356526875743---43204438864687578742-----8121------22130304707887500
No 141
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=43.26 E-value=25 Score=15.81 Aligned_cols=75 Identities=13% Similarity=0.166 Sum_probs=33.3
Q ss_pred CHHHHH-HHHHHHHHCCCCCCCC-C---CEEE-----------EECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCH
Q ss_conf 926999-9999998604643358-8---2899-----------9752899999985189148999626889801202271
Q gi|254780537|r 1 MLRYFI-CLLFSYIPMSASATTQ-K---KVVL-----------SSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTS 64 (294)
Q Consensus 1 M~r~~~-~l~~~~~~~~~~~~~~-~---~~Vv-----------~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp 64 (294)
|+|.++ +++++++++++.+.++ + +++. ....|+.+..++-.|-.| +..++.+-. .-
T Consensus 1 m~~r~l~~~~~~~~~~~~~a~a~~~p~~l~~gv~P~~~~~~~~~~~~Pl~~yL~~~lg~~V--e~~~~~~y~------~~ 72 (288)
T TIGR03431 1 MLRRLILSLVAAFMLISSNAQAEDWPKELNFGIIPTENASDLKQRWEPLADYLSKKLGVKV--KLFFATDYA------GV 72 (288)
T ss_pred CCHHHHHHHHHHHHHHCCHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCE--EEEECCCHH------HH
T ss_conf 9088999999999997432243048836899980699999999999999999999878978--999689999------99
Q ss_pred HHHHHHCCCCEEEEECCCC
Q ss_conf 2457760378999988761
Q gi|254780537|r 65 ADAIKIQNADLILCNGLHL 83 (294)
Q Consensus 65 ~d~~~i~~Adliv~~G~~~ 83 (294)
-+.-+=.+.|+.+.++..|
T Consensus 73 ~eal~~g~~Dia~~~p~~y 91 (288)
T TIGR03431 73 IEGMRFGKVDIAWYGPSSY 91 (288)
T ss_pred HHHHHCCCCEEEEECCHHH
T ss_conf 9999859830999884788
No 142
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=43.00 E-value=25 Score=15.79 Aligned_cols=50 Identities=0% Similarity=-0.093 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCHH--HHHHHHHHHCCCEEEEEECC
Q ss_conf 078999999976201697189982789979--99999998299344432012
Q gi|254780537|r 217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQ--PAKQVAYETNASYGGVLYVD 266 (294)
Q Consensus 217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~--~~~~ia~e~~~~~~~~~~~d 266 (294)
..+-...++.+.++..+..+++..||..-+ ..+..+.+.|+++..+.+.|
T Consensus 34 I~Av~~~e~~~~i~~~~yDv~LlgPQVr~~~~~~k~~a~~~giPv~vI~~~~ 85 (104)
T PRK09590 34 VDAISATEGGKAIAAAAFDLYLVSPQTKMYFKQFEEAGSKAGKPVVQIPPQA 85 (104)
T ss_pred EEEEEHHHHHHHHCCCCCCEEEECHHHHHHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 9984888988763226887899887688789999999987299778878746
No 143
>PTZ00216 acyl-CoA synthetase; Provisional
Probab=42.49 E-value=25 Score=15.73 Aligned_cols=18 Identities=6% Similarity=0.133 Sum_probs=8.9
Q ss_pred CEEEEECHHHHHHHHHHC
Q ss_conf 289997528999999851
Q gi|254780537|r 24 KVVLSSFSIIGDITQNIA 41 (294)
Q Consensus 24 ~~Vv~s~~pl~~iv~~I~ 41 (294)
..|+++-.-+..+.+.+.
T Consensus 195 ~~l~~~~~~~~~ll~~~~ 212 (700)
T PTZ00216 195 KAIVCNGKNVPNLLRLMK 212 (700)
T ss_pred CEEEECCHHHHHHHHHHH
T ss_conf 889985168999999886
No 144
>PRK08591 acetyl-CoA carboxylase biotin carboxylase subunit; Validated
Probab=42.15 E-value=15 Score=17.23 Aligned_cols=15 Identities=33% Similarity=0.439 Sum_probs=7.3
Q ss_pred HHHCCCCEEEEECCCC
Q ss_conf 7760378999988761
Q gi|254780537|r 68 IKIQNADLILCNGLHL 83 (294)
Q Consensus 68 ~~i~~Adliv~~G~~~ 83 (294)
.+-..+|.+ +=|.||
T Consensus 70 A~~~g~dAi-hPGYGF 84 (449)
T PRK08591 70 AEITGADAI-HPGYGF 84 (449)
T ss_pred HHHHCCCEE-ECCCCH
T ss_conf 998299989-727424
No 145
>KOG4549 consensus
Probab=42.13 E-value=26 Score=15.70 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=39.1
Q ss_pred CCCCC-HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 40007-89999999762016971899827899799999999829934443
Q gi|254780537|r 214 DSERS-PSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV 262 (294)
Q Consensus 214 ~~eps-~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294)
+.|++ -.++..++..+|+.+|.++.+....+++.+++.-+-.+++..++
T Consensus 40 g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~iA~q~L~~fkvk~~Gv 89 (144)
T KOG4549 40 GEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQIASQGLETFKVKQTGV 89 (144)
T ss_pred CCEEEECCCHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 60456604356789999865928999527788899999999855575544
No 146
>PRK10866 outer membrane protein assembly complex subunit YfiO; Provisional
Probab=41.80 E-value=20 Score=16.51 Aligned_cols=39 Identities=15% Similarity=0.018 Sum_probs=18.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHH
Q ss_conf 9269999999998604643358828999752899999985
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNI 40 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I 40 (294)
||++++++++++++.+|++.. +...-.|..-++.-+..-
T Consensus 4 ~k~l~~~~~l~l~l~gCs~~~-~~~~~~~~~~~Y~~A~~~ 42 (243)
T PRK10866 4 MKYLVAAATLSLFLAGCSGSK-EEVPDNPPNEIYATAQQK 42 (243)
T ss_pred HHHHHHHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHH
T ss_conf 899999999999998768998-888899999999999999
No 147
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal; InterPro: IPR012714 Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacteria), a toroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.; GO: 0005524 ATP binding, 0051082 unfolded protein binding, 0006457 protein folding.
Probab=41.57 E-value=26 Score=15.64 Aligned_cols=50 Identities=12% Similarity=0.288 Sum_probs=36.8
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHH-------------------HHHHHHHHHCCCEEEEEECCCCCCC
Q ss_conf 999999976201697189982789979-------------------9999999829934443201237877
Q gi|254780537|r 220 SMMRHAINQMRSHKIKFIFSESTNSDQ-------------------PAKQVAYETNASYGGVLYVDSLSKP 271 (294)
Q Consensus 220 ~~l~~~~~~ik~~~v~~if~e~~~~~~-------------------~~~~ia~e~~~~~~~~~~~d~l~~~ 271 (294)
+.|++..+.|.+-|+.++||+-..... -++.|++.||++++. .++-+.+.
T Consensus 269 ~~Lke~VD~i~~~GAnVVfCQKGIDD~Aq~yLak~GIlAvRRVKkSDi~~LarATGA~i~s--~i~e~~~~ 337 (522)
T TIGR02339 269 AMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVS--SIKEITES 337 (522)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHCCCCEEC--CHHHCCHH
T ss_conf 9999998899982898798228868999998710560220433533799998731884125--73116963
No 148
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=41.41 E-value=26 Score=15.62 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 6431888999999899863014553378998
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKT 175 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~ 175 (294)
..+.|..+-......+++.-+++.-.+....
T Consensus 232 ~~~sP~~a~l~~RGL~TL~lRm~~~~~nA~~ 262 (388)
T PRK08861 232 ATGTPFDSYMTLRGIRTLGARMRVHEESAQE 262 (388)
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 7788677788854789788999999986999
No 149
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=41.12 E-value=27 Score=15.60 Aligned_cols=49 Identities=12% Similarity=0.166 Sum_probs=35.2
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCHHHHH---HHHHHHCCCEEEEEECCCCCC
Q ss_conf 9999976201697189982789979999---999982993444320123787
Q gi|254780537|r 222 MRHAINQMRSHKIKFIFSESTNSDQPAK---QVAYETNASYGGVLYVDSLSK 270 (294)
Q Consensus 222 l~~~~~~ik~~~v~~if~e~~~~~~~~~---~ia~e~~~~~~~~~~~d~l~~ 270 (294)
.++..+.+++.+++.+|.-....++..+ .++++.|+++..+.++.-||.
T Consensus 16 ~KQT~KAi~~g~~~~V~IA~Dad~~v~~~v~~l~~ek~Ipv~~V~Smk~LGk 67 (82)
T PRK13602 16 TKQTVKALKRGSVKEVVVAKDADPCLTSGVINLANEQGVPVSMVESMKKLGK 67 (82)
T ss_pred HHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHCCCCEEEECCHHHHHH
T ss_conf 3998999976981299998259888999999999972998799628999751
No 150
>PRK05967 cystathionine beta-lyase; Provisional
Probab=40.24 E-value=28 Score=15.51 Aligned_cols=31 Identities=6% Similarity=0.039 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 6431888999999899863014553378998
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKT 175 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~ 175 (294)
.-+.|.++-......+++.-+++.-.+....
T Consensus 242 ~~l~P~~a~l~lrGl~TL~lRm~r~~~nA~~ 272 (392)
T PRK05967 242 LCAGPDDTYQILRGLRTMGIRLEHHRKSALE 272 (392)
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 6679788899871776099999999998999
No 151
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=40.18 E-value=28 Score=15.50 Aligned_cols=49 Identities=12% Similarity=0.168 Sum_probs=21.5
Q ss_pred ECHHHHHHHHHHCCCEEEEEEEE-CCCCCCCCCCCCHHHHHHH--CCCCEEEEEC
Q ss_conf 75289999998518914899962-6889801202271245776--0378999988
Q gi|254780537|r 29 SFSIIGDITQNIAKDLVTVTTLV-EAGNDSHSYQVTSADAIKI--QNADLILCNG 80 (294)
Q Consensus 29 s~~pl~~iv~~I~gd~v~V~~li-~~g~dpH~ye~tp~d~~~i--~~Adliv~~G 80 (294)
+....+.+.+++-...+++..+- +++ +.+..-.+-.+.+ .+-|+|-..+
T Consensus 38 ~~~~~~~~~~~~~~~~v~~~~l~~~~~---~~~~~~~~l~~li~~~kpDiIh~~~ 89 (374)
T TIGR03088 38 ALTEVSAFRKRIQRPDVAFYALHKQPG---KDVAVYPQLYRLLRQLRPDIVHTRN 89 (374)
T ss_pred EECCCCHHHHHHHHCCCEEEECCCCCC---CCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 978984578999868988999078876---4799999999999983984898636
No 152
>KOG1185 consensus
Probab=39.33 E-value=28 Score=15.41 Aligned_cols=29 Identities=34% Similarity=0.639 Sum_probs=23.6
Q ss_pred CCCCCCCCHHHHHHHCCCCEEEEECCCCC
Q ss_conf 80120227124577603789999887610
Q gi|254780537|r 56 DSHSYQVTSADAIKIQNADLILCNGLHLE 84 (294)
Q Consensus 56 dpH~ye~tp~d~~~i~~Adliv~~G~~~E 84 (294)
|-|-+..+..-..+|++||+++..|.-+.
T Consensus 260 d~hPl~v~~aRS~ALk~ADvvll~Garln 288 (571)
T KOG1185 260 DNHPLNVSSARSLALKKADVVLLAGARLN 288 (571)
T ss_pred CCCCHHHHHHHHHHHHHCCEEEEECCEEE
T ss_conf 88720266789988743888999415565
No 153
>PRK12789 flgI flagellar basal body P-ring protein; Reviewed
Probab=39.15 E-value=15 Score=17.26 Aligned_cols=39 Identities=13% Similarity=0.226 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHH----H-----HHHH--------HHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 135678999999999----8-----6431--------888999999899863014553378
Q gi|254780537|r 129 SLTNAMIYIENIRKA----L-----TALD--------PSNAKKYELNAREYSEKIRNSILP 172 (294)
Q Consensus 129 dp~~~~~~a~~I~~~----L-----~~~d--------P~~~~~y~~N~~~~~~~l~~l~~~ 172 (294)
|..++.+++++|-.. + ...| |.+ | +--.|.+++++++-+
T Consensus 195 DFtTA~ria~aIN~~~~~~~g~~~A~a~d~~tV~v~~P~~---~--~~v~fla~ie~l~V~ 250 (367)
T PRK12789 195 DFKTATQISDAINAYSLGRYGRRVASERDQRTVVLSRPRQ---I--GPTRFIAEIGDLTIE 250 (367)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCC---C--CHHHHHHHHHCCCCC
T ss_conf 7799999999986551123685756746896379817999---7--889999997568467
No 154
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Probab=38.83 E-value=25 Score=15.78 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=6.1
Q ss_pred EEEECHHHHHHHHHHC
Q ss_conf 9997528999999851
Q gi|254780537|r 26 VLSSFSIIGDITQNIA 41 (294)
Q Consensus 26 Vv~s~~pl~~iv~~I~ 41 (294)
++.+...+.+.++++.
T Consensus 126 ~li~~~~~~~~~~~~~ 141 (560)
T PRK08751 126 VLVVIDNFGTTVQQVI 141 (560)
T ss_pred EEEEECCHHHHHHHHH
T ss_conf 9999264366899986
No 155
>PRK13138 consensus
Probab=38.54 E-value=29 Score=15.33 Aligned_cols=94 Identities=12% Similarity=0.152 Sum_probs=41.5
Q ss_pred CCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 65214577529728872268864000789999999762016-97189982789979999999982993444320123787
Q gi|254780537|r 192 GCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-KIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSK 270 (294)
Q Consensus 192 ~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~ 270 (294)
..|-|....+|.. .....-+.++.+.++.+|+. ++++..-=.-.+++.++.+.+....=+++--.++-+.+
T Consensus 169 ~gFiY~Vs~~GvT--------G~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~~~~~ADGvIVGSaiv~~i~~ 240 (264)
T PRK13138 169 SGFIYYVTSYGVT--------GERGAIASGLEDRIQMVRKIVGLPVCAGFGISTADQAKEISTYADGVIIGSAVQKIIEE 240 (264)
T ss_pred CCEEEEEECCCCC--------CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHCCCEEEECHHHHHHHHH
T ss_conf 8808987545667--------87655537699999999974389838860679899999998349999981999999997
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 77886899999999999998620
Q gi|254780537|r 271 PDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 271 ~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
...+.+.-.+-+..-+..|++|+
T Consensus 241 ~~~~~~~~~~~v~~~~~~lk~~~ 263 (264)
T PRK13138 241 NGSDRENCADKLFAYASEIRASM 263 (264)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 27877789999999999999963
No 156
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=38.18 E-value=30 Score=15.30 Aligned_cols=12 Identities=17% Similarity=0.354 Sum_probs=7.4
Q ss_pred HHCCCCEEEEEC
Q ss_conf 760378999988
Q gi|254780537|r 69 KIQNADLILCNG 80 (294)
Q Consensus 69 ~i~~Adliv~~G 80 (294)
....+|.++.|+
T Consensus 150 ~~~~~d~iianS 161 (351)
T cd03804 150 SAARVDYFIANS 161 (351)
T ss_pred HHHCCCEEEECC
T ss_conf 874388999879
No 157
>PRK11251 DNA-binding transcriptional activator OsmE; Provisional
Probab=38.11 E-value=30 Score=15.29 Aligned_cols=66 Identities=11% Similarity=0.138 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHH--------HHHHHCCCE-EEEEEEECCCCCCCCCCCCHHHH
Q ss_conf 92699999999986046433588289997528999--------999851891-48999626889801202271245
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGD--------ITQNIAKDL-VTVTTLVEAGNDSHSYQVTSADA 67 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~--------iv~~I~gd~-v~V~~li~~g~dpH~ye~tp~d~ 67 (294)
|++.+++..+.+.+++++.+-.+..+....+...+ =|.+|||.- -+++.+..+|+ -++|-+...|=
T Consensus 1 ~~~~~l~aaa~~~~LaGCt~~d~~~~~~~ePlVkdV~~GMT~qqV~~igG~Pss~~~~~~~~Gt-C~~YiL~~~dG 75 (109)
T PRK11251 1 NMAGILSAAAVLTMLAGCTAYDRNPVQYVEPVVKDVKKGMTRQQVLQIGGKPSSEVSMIHARGT-CQTYILGNRDG 75 (109)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHCCCCHHHHHHHCCCCCCEEEEECCCCC-CCEEEEECCCC
T ss_conf 9025889999999997144776781343150698887475799999854998641788607852-20037324689
No 158
>PRK08463 acetyl-CoA carboxylase; Validated
Probab=37.97 E-value=22 Score=16.11 Aligned_cols=10 Identities=0% Similarity=0.135 Sum_probs=3.4
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780537|r 279 LDLLRFSLTK 288 (294)
Q Consensus 279 ~~~m~~N~~~ 288 (294)
..|+..|++.
T Consensus 438 T~fle~~~~e 447 (478)
T PRK08463 438 TSYIETHMQE 447 (478)
T ss_pred CHHHHHHHHH
T ss_conf 1277640786
No 159
>PRK03002 prsA peptidylprolyl isomerase; Reviewed
Probab=37.94 E-value=28 Score=15.41 Aligned_cols=17 Identities=6% Similarity=0.028 Sum_probs=8.7
Q ss_pred CHHHHHHHHHHHCCCEE
Q ss_conf 97999999998299344
Q gi|254780537|r 244 SDQPAKQVAYETNASYG 260 (294)
Q Consensus 244 ~~~~~~~ia~e~~~~~~ 260 (294)
..+.+..+-+..++++-
T Consensus 253 ~~~~i~k~~kkanV~ik 269 (285)
T PRK03002 253 GKKLLQKELKKANIKIN 269 (285)
T ss_pred HHHHHHHHHHHCCCCCC
T ss_conf 99999999987898436
No 160
>TIGR01163 rpe ribulose-phosphate 3-epimerase; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Alcaligenes eutrophus two copies of the gene coding for PPE are known , one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process.
Probab=37.63 E-value=30 Score=15.24 Aligned_cols=138 Identities=13% Similarity=0.082 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEE-----CCCCHHHHHHC
Q ss_conf 2213567899999999986431888999999899863014553378998863078447369982-----66521457752
Q gi|254780537|r 127 WMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTS-----EGCLVYLAEDF 201 (294)
Q Consensus 127 Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~-----H~af~Y~~~~y 201 (294)
-+|-..|+.-.+...+.+++.=++.=. +---+ ..-+..+.+.+|+.- -+.-++. =++..|+....
T Consensus 60 P~DVHLMv~~pd~~~~~Fa~aGA~~I~-vH~Ea---~~h~~R~l~~Ik~~G------~~AG~v~NP~TPl~~~~~~L~~~ 129 (216)
T TIGR01163 60 PIDVHLMVENPDRYIEDFAEAGADIIT-VHAEA---TEHIHRLLQLIKELG------AKAGIVLNPATPLEALEYVLEDV 129 (216)
T ss_pred CEEEEECCCCHHHHHHHHHHHCCCEEE-EECCC---CCCHHHHHHHHHHCC------CCEEEEECCCCCHHHHHHHHHHC
T ss_conf 126630357857778899970899899-84377---626799999999718------97068867999987899898762
Q ss_pred CCEEEEECCCCC---CC---CCCHHHHHHHHHHHC--CCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 972887226886---40---007899999997620--169718-998278997999999998299344432012378777
Q gi|254780537|r 202 GFKSLYLWPINS---DS---ERSPSMMRHAINQMR--SHKIKF-IFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPD 272 (294)
Q Consensus 202 Gl~~~~~~~~~~---~~---eps~~~l~~~~~~ik--~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~ 272 (294)
++--+ ...+| |+ +-+-..++++++.|+ +.+-+| |..+.+.+.+.+..+ ++.|+.+.+. |...
T Consensus 130 D~VLl--MSVnPGFgGQkFIP~~~~Kir~~R~~id~~~~~~~~~ieVDGGv~~~ni~~~-~~AGAD~~Va------GSai 200 (216)
T TIGR01163 130 DLVLL--MSVNPGFGGQKFIPETLEKIRELRKMIDKLELGLSILIEVDGGVNEDNIAEV-AEAGADILVA------GSAI 200 (216)
T ss_pred CEEEE--EEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHH-HHCCCCEEEE------EEEE
T ss_conf 98998--8760799884110578999999999998602799558997179897679999-9758989998------3102
Q ss_pred CCCC--CHHHHHH
Q ss_conf 8868--9999999
Q gi|254780537|r 273 GPAP--TYLDLLR 283 (294)
Q Consensus 273 ~~~~--~Y~~~m~ 283 (294)
-.++ +|-+.++
T Consensus 201 F~~~s~d~~~~i~ 213 (216)
T TIGR01163 201 FGADSLDYKEAIR 213 (216)
T ss_pred ECCCCCCHHHHHH
T ss_conf 0888668799997
No 161
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=37.56 E-value=30 Score=15.23 Aligned_cols=60 Identities=17% Similarity=0.063 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHH-----HHHHCCCE
Q ss_conf 6431888999999899863014553378998863078447369982665214-----57752972
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVY-----LAEDFGFK 204 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y-----~~~~yGl~ 204 (294)
.-+.|-++-......+++.-+++.-.+.......-+....+.--++||...- ++++++.+
T Consensus 284 ~~lsP~~a~L~lrGL~TL~lRm~r~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~h~la~~~~~~ 348 (437)
T PRK05613 284 ATLSPFNAWAAVQGLDTLSLRLERHNENAIKVAEFLNNHEKVAKVNFAGLPDSPWYATKEKLGLK 348 (437)
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCHHHHHHHCCC
T ss_conf 67884888998736750889999999999999999850999477989999998329999985899
No 162
>KOG0053 consensus
Probab=37.42 E-value=30 Score=15.22 Aligned_cols=71 Identities=11% Similarity=-0.110 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH---HHHHCCCCCCCEE---EEECCCCHHHHH
Q ss_conf 1356789999999998643188899999989986301455337899---8863078447369---982665214577
Q gi|254780537|r 129 SLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLK---TRIEKVDPEKRWF---VTSEGCLVYLAE 199 (294)
Q Consensus 129 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~---~~~~~~p~~~~~~---v~~H~af~Y~~~ 199 (294)
+++.+.++-....+-+.-.+|-.+..-..-++++.-++++-.+... ..+..-|.-++.+ +.+||.+.+..+
T Consensus 240 ~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglktl~lRi~~~~ena~~~A~~Le~~~~v~kv~YPgL~Shp~h~~~~~ 316 (409)
T KOG0053 240 SEELASRLKFLQEDLGWCEDPFDLFLLSRGLKTLHLRINKHSENALKIALLLEAHPKVKKVYYPGLPSHPNHELAKR 316 (409)
T ss_pred CHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 49999999999998557998899999866841554049888878999998765088536897589888824777875
No 163
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=37.34 E-value=30 Score=15.21 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=22.2
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 9999999762016971899827899799999999829
Q gi|254780537|r 220 SMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETN 256 (294)
Q Consensus 220 ~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~ 256 (294)
.+-.+....+++.++..+|.........++.|.++..
T Consensus 99 ~dp~~~~~~L~~~Gv~~VF~pGT~~~~ii~~i~~~l~ 135 (137)
T PRK02261 99 HDFEEVEKKFKEMGFDRVFAPGTDLEEVIDDLKADLN 135 (137)
T ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
T ss_conf 7839999999977979887978899999999999863
No 164
>TIGR01245 trpD anthranilate phosphoribosyltransferase; InterPro: IPR005940 In many widely different species, including Escherichia coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzyme is a C-terminal part of a multifunctional protein together with glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (4.1.3.27 from EC).; GO: 0004048 anthranilate phosphoribosyltransferase activity, 0000162 tryptophan biosynthetic process.
Probab=36.75 E-value=31 Score=15.15 Aligned_cols=49 Identities=14% Similarity=0.206 Sum_probs=34.6
Q ss_pred HHHHHHHCCCCCEEEEEECCCCH-HHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 99997620169718998278997-999999998299344432012378777
Q gi|254780537|r 223 RHAINQMRSHKIKFIFSESTNSD-QPAKQVAYETNASYGGVLYVDSLSKPD 272 (294)
Q Consensus 223 ~~~~~~ik~~~v~~if~e~~~~~-~~~~~ia~e~~~~~~~~~~~d~l~~~~ 272 (294)
.++.+.|++.|+-++|+...++. |.+..+-++++++++ ++.+-||..|=
T Consensus 132 e~v~~~l~~~GigFlFAP~yHpa~k~v~pvR~~Lg~rTv-FN~LGPL~NPA 181 (331)
T TIGR01245 132 EKVARSLEEVGIGFLFAPLYHPAMKHVAPVRRELGVRTV-FNLLGPLTNPA 181 (331)
T ss_pred HHHHHHHHHCCCEEEECCCCCHHHHHHCCCHHHCCCCEE-ECCHHHCCCCC
T ss_conf 999999974694585177513465642041111686402-01210002656
No 165
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=36.68 E-value=20 Score=16.41 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=11.2
Q ss_pred CCEEEEEEEECCCCCCCCCCCCHH
Q ss_conf 891489996268898012022712
Q gi|254780537|r 42 KDLVTVTTLVEAGNDSHSYQVTSA 65 (294)
Q Consensus 42 gd~v~V~~li~~g~dpH~ye~tp~ 65 (294)
++.=.|..+.. .|+-.|+.+|+
T Consensus 60 ~~dE~I~~v~~--Gd~~~W~v~~~ 81 (293)
T PRK13861 60 GANETVTAVAV--SNSKDLAALPR 81 (293)
T ss_pred CCCCEEEEECC--CCCCCEEEECC
T ss_conf 89987998615--88201489627
No 166
>PRK04792 tolB translocation protein TolB; Provisional
Probab=36.38 E-value=32 Score=15.11 Aligned_cols=30 Identities=10% Similarity=0.025 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 135678999999999864318889999998
Q gi|254780537|r 129 SLTNAMIYIENIRKALTALDPSNAKKYELN 158 (294)
Q Consensus 129 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N 158 (294)
.+.+.+.+|+.|+|..-+.--..+..|..+
T Consensus 157 ~~~~~R~~aH~isD~Iy~~lTG~~G~F~tr 186 (450)
T PRK04792 157 SAPRMREYAHRISDLVYEQLTGERGAFLTR 186 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 778999999999999999970997530104
No 167
>PRK06683 hypothetical protein; Provisional
Probab=36.29 E-value=32 Score=15.10 Aligned_cols=49 Identities=14% Similarity=0.176 Sum_probs=35.4
Q ss_pred HHHHHHHHCCCCCEEEEEECCCCHHHHH---HHHHHHCCCEEEEEECCCCCC
Q ss_conf 9999976201697189982789979999---999982993444320123787
Q gi|254780537|r 222 MRHAINQMRSHKIKFIFSESTNSDQPAK---QVAYETNASYGGVLYVDSLSK 270 (294)
Q Consensus 222 l~~~~~~ik~~~v~~if~e~~~~~~~~~---~ia~e~~~~~~~~~~~d~l~~ 270 (294)
.++..+.+|..+++.+|.-....++..+ .++++.|+++..+..+.-||.
T Consensus 16 tKQTlKAlk~g~v~~v~iA~DAD~~v~~~v~~~a~~~~ipV~~VdSmk~LGk 67 (82)
T PRK06683 16 HKRTLEAIKNGIVKEVVIAEDADMRLTHVIIRTALQHNIPITKVESVRKLGK 67 (82)
T ss_pred HHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHHHHHCCCEEEEECHHHHHH
T ss_conf 5988999984982699997258688899999999982998799712988741
No 168
>pfam07383 DUF1496 Protein of unknown function (DUF1496). This family consists of several bacterial proteins of around 90 residues in length. Members of this family seem to be found exclusively in the Orders Vibrionales and Enterobacteriales. The function of this family is unknown.
Probab=36.28 E-value=29 Score=15.38 Aligned_cols=33 Identities=18% Similarity=0.135 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHH
Q ss_conf 926999999999860464335882899975289
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSII 33 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl 33 (294)
|++.++..+.++..+.+.+......|+++.+|-
T Consensus 1 Mk~~~~~~~~~~~~~~~la~~~~~dv~~~~~~~ 33 (88)
T pfam07383 1 MKRLLILCFAALLSLVALANSVAADVIVTPPPE 33 (88)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCEECCCCHH
T ss_conf 921899999999999986165788666169977
No 169
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=36.23 E-value=32 Score=15.10 Aligned_cols=185 Identities=13% Similarity=0.160 Sum_probs=80.0
Q ss_pred HHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCC-CCCCCCHHHHHH
Q ss_conf 9998518914899962688980120227124577603789999887610689999974235575211-123742022210
Q gi|254780537|r 36 ITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIIT-VTDGINPIGVSE 114 (294)
Q Consensus 36 iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~-~~~~i~~~~~~~ 114 (294)
+-+-+.+=.++|..++|-|.+ +.|+++|-+||+=|.--.++-.-..+++++. .+.+.+. +-=|
T Consensus 180 i~RLl~~lGi~VNvV~P~Gas-------~~dl~rL~~A~~Nv~lYrE~g~~aa~~Le~~-fg~P~~~~~PiG-------- 243 (524)
T PRK02910 180 LRRLLATLGIDVNVVAPLGAS-------PADLKRLPAAWFNVVLYREIGESAAEYLERE-FGMPYVTTVPIG-------- 243 (524)
T ss_pred HHHHHHHCCCEEEEEECCCCC-------HHHHHHCCCCCEEEECCHHHHHHHHHHHHHH-HCCCEECCCCCC--------
T ss_conf 999998759668898049999-------7888510204074642587779999999988-589701034754--------
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCCCEEEEECCC
Q ss_conf 01233463011122135678999999999864318889999998998630145533789988630-78447369982665
Q gi|254780537|r 115 DTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEK-VDPEKRWFVTSEGC 193 (294)
Q Consensus 115 ~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~-~p~~~~~~v~~H~a 193 (294)
.......+..+.+. ..++|.....|...-.....++ -|+...... .=..+|.||.....
T Consensus 244 ---------------v~~T~~flrel~~~-lg~~~~~~~~~i~~~~~~~s~~----~W~srSvD~~~ltgKr~fVfGDaT 303 (524)
T PRK02910 244 ---------------VGATARFIREVAEL-LNLDGADLEAFILDELSAPSRL----PWFSRSVDSTYLTGKRVFVFGDAT 303 (524)
T ss_pred ---------------HHHHHHHHHHHHHH-HCCCCCCHHHHHHHHCCCCCCC----CEEEECCCCHHHCCCEEEEECCCH
T ss_conf ---------------17999999999999-6899642255554420142335----301213650121364479965607
Q ss_pred C-----HHHHHHCCCEEEEECCCCCC-CCC-------------CHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 2-----14577529728872268864-000-------------7899999997620169718998278997999999998
Q gi|254780537|r 194 L-----VYLAEDFGFKSLYLWPINSD-SER-------------SPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYE 254 (294)
Q Consensus 194 f-----~Y~~~~yGl~~~~~~~~~~~-~ep-------------s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e 254 (294)
+ .++.++.|++++++=.-+.+ .++ --.|-.++.+.|.+.....||. +|.. +-+++.
T Consensus 304 ha~a~~kil~~ElG~~vvg~GTY~r~~Ar~~r~~~~~~~~e~lItdD~~eV~~~I~~~~P~lv~G-TqME----RHi~kr 378 (524)
T PRK02910 304 HAVAAAKILRDELGFEVVGAGTYLREDARWVRAAAKGYGDEALITDDYLEVEDAIAEAAPELVLG-TQME----RHSAKR 378 (524)
T ss_pred HHHHHHHHHHHHHCEEEEEECCCHHHHHHHHHHHHHHHCCCCEECCCHHHHHHHHHHCCCCEEEC-CHHH----HHHHHC
T ss_conf 99999999888648078731355187789999999860645064067899999998559652104-0787----655520
Q ss_pred HCCCEEE
Q ss_conf 2993444
Q gi|254780537|r 255 TNASYGG 261 (294)
Q Consensus 255 ~~~~~~~ 261 (294)
++++-.+
T Consensus 379 L~IPCaV 385 (524)
T PRK02910 379 LGIPCAV 385 (524)
T ss_pred CCCCCCC
T ss_conf 5998556
No 170
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=36.03 E-value=32 Score=15.07 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=10.2
Q ss_pred HHHHHHHHCCCEEEEEEEE
Q ss_conf 9999998518914899962
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLV 51 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~li 51 (294)
+..+++.++.-..+|+.+.
T Consensus 20 v~~La~~L~~~Gh~V~Vit 38 (398)
T cd03796 20 IYQLSQCLIKRGHKVVVIT 38 (398)
T ss_pred HHHHHHHHHHCCCEEEEEE
T ss_conf 9999999997699899996
No 171
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=35.89 E-value=29 Score=15.41 Aligned_cols=13 Identities=23% Similarity=0.263 Sum_probs=9.8
Q ss_pred CCCCCCCCHHHHH
Q ss_conf 8012022712457
Q gi|254780537|r 56 DSHSYQVTSADAI 68 (294)
Q Consensus 56 dpH~ye~tp~d~~ 68 (294)
+.-.|||+|+|+.
T Consensus 32 NVgrWqpt~sDLq 44 (55)
T PRK13859 32 NVGRWQPTPSDLQ 44 (55)
T ss_pred CCCCCCCCHHHCC
T ss_conf 2245557865437
No 172
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=35.84 E-value=32 Score=15.05 Aligned_cols=73 Identities=12% Similarity=0.166 Sum_probs=34.7
Q ss_pred CCCCEEEEECCCCHHHHH-------HCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH--HHH
Q ss_conf 447369982665214577-------52972887226886400078999999976201697189982789979999--999
Q gi|254780537|r 182 PEKRWFVTSEGCLVYLAE-------DFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAK--QVA 252 (294)
Q Consensus 182 ~~~~~~v~~H~af~Y~~~-------~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~--~ia 252 (294)
..++.++....+-+..++ +.|+..... ..+.........+.++++-.+|.-+..+....+ .+|
T Consensus 131 ~A~~I~i~G~G~S~~vA~~~~~kl~rig~~~~~~--------~d~~~~~~~~~~l~~~Dv~I~iS~sG~t~~~~~~~~~A 202 (282)
T PRK11557 131 SARRIILTGIGASGLVAQNFAWKLMKIGINAVAE--------RDMHALLATVQALSPDDLLLAISYSGERRELNLAADEA 202 (282)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHHHCCCEEEC--------CCHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHH
T ss_conf 4895899970436999999999999809963740--------88689999998189999899985999978999999999
Q ss_pred HHHCCCEEEE
Q ss_conf 9829934443
Q gi|254780537|r 253 YETNASYGGV 262 (294)
Q Consensus 253 ~e~~~~~~~~ 262 (294)
++.|++++.+
T Consensus 203 k~~Ga~iIaI 212 (282)
T PRK11557 203 LRVGGKVLAI 212 (282)
T ss_pred HHCCCEEEEE
T ss_conf 9879939997
No 173
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase; InterPro: IPR002082 Aspartate carbamoyltransferase (ATCase) catalyses the formation of carbamoyl-aspartate in the pyrimidine biosynthesis pathway, by the association of aspartate and carbamoyl-phosphate. This is the commitment step in the Escherichia coli pathway and is regulated by feedback inhibition by CTP, the final product of the pathway. The structural organisation of the ATCase protein varies considerably between different organisms. In bacteria such as E. coli, Salmonella typhimurium and Serratia marcescens, the ATCase is a dodecamer of 2 catalytic (c) trimers and 3 regulatory (r) dimers. The catalytic domains are coded for by the pyrB gene, and the regulatory domains by pyrI. In Gram-positive bacteria such as Bacillus subtilis, ATCase exists as a trimer of catalytic subunits, but unlike in E. coli, it neither contains nor binds to regulatory subunits. In eukaryotes, ATCase is found as a single domain in a multifunctional enzyme that contains activity for glutamine amidotransferase, carbamoylphosphate synthetase, dihydroorotase, and aspartate carbamoyltransferase. ; GO: 0004070 aspartate carbamoyltransferase activity, 0006207 'de novo' pyrimidine base biosynthetic process.
Probab=35.27 E-value=33 Score=14.99 Aligned_cols=73 Identities=15% Similarity=0.196 Sum_probs=44.3
Q ss_pred HHHHHHHHCC--CEEEEEEEECCCC-C---CCCCCCCHHHHHHHCCCCEEEEECCCCC---HHHHHHHHHC----CCCCC
Q ss_conf 9999998518--9148999626889-8---0120227124577603789999887610---6899999742----35575
Q gi|254780537|r 33 IGDITQNIAK--DLVTVTTLVEAGN-D---SHSYQVTSADAIKIQNADLILCNGLHLE---ETYMKYFTNL----KKGTK 99 (294)
Q Consensus 33 l~~iv~~I~g--d~v~V~~li~~g~-d---pH~ye~tp~d~~~i~~Adliv~~G~~~E---~~~~~~~~~~----~~~~~ 99 (294)
..--.+.+|| +.+.+ -+.++ + ..++-=|-+-+...+++|+||.=- .+| ..+.+++... .-+.+
T Consensus 60 FE~A~KRLGgPn~v~~~---~~~~~sS~~KGEtL~DTi~~~~~y~D~D~iViRH-~~~GvCegaar~~ae~~~R~~~~vP 135 (336)
T TIGR00670 60 FETAMKRLGGPNDVVNF---SDSETSSVAKGETLADTIKTLSAYGDSDAIVIRH-PLEGVCEGAARLAAEVSDRLGIEVP 135 (336)
T ss_pred HHHHHHHHCCCCCEEEC---CCCCCCCHHCCCCHHHHHHHHHHCCCCCEEEEEC-CCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 88988872798545622---5563411210544788999885404755699835-8654134688999886311045787
Q ss_pred -CCCCCCCCCH
Q ss_conf -2111237420
Q gi|254780537|r 100 -IITVTDGINP 109 (294)
Q Consensus 100 -~i~~~~~i~~ 109 (294)
+|+++||...
T Consensus 136 sviNAGDG~~q 146 (336)
T TIGR00670 136 SVINAGDGSGQ 146 (336)
T ss_pred EEEECCCCCCC
T ss_conf 16636878787
No 174
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=35.17 E-value=33 Score=14.98 Aligned_cols=95 Identities=15% Similarity=0.091 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHH----------------------HHH--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 301112213567899999999----------------------986--43188899999989986301455337899886
Q gi|254780537|r 122 PNPHAWMSLTNAMIYIENIRK----------------------ALT--ALDPSNAKKYELNAREYSEKIRNSILPLKTRI 177 (294)
Q Consensus 122 ~dpH~Wldp~~~~~~a~~I~~----------------------~L~--~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~ 177 (294)
.||-+|-||..+.++.+..+. .|. +-||+-.+..+.....+.+++..|..+++..+
T Consensus 24 s~p~fW~D~~~a~kl~kE~~~L~~~v~~~~~l~~~~~dl~el~eLl~ee~D~el~e~a~~El~~l~~~l~~lE~eL~~lL 103 (360)
T PRK00591 24 SDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAEEDLEDAKELLKEESDPEMREMAKEELKELEERLEELEEELKILL 103 (360)
T ss_pred HCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 29852129999999999999999999999999999998999999986279978999999999999999999999999983
Q ss_pred HC-CCCC-CCEEEEECCCCH----------------HHHHHCCCEEEEECCCCCCCCC
Q ss_conf 30-7844-736998266521----------------4577529728872268864000
Q gi|254780537|r 178 EK-VDPE-KRWFVTSEGCLV----------------YLAEDFGFKSLYLWPINSDSER 217 (294)
Q Consensus 178 ~~-~p~~-~~~~v~~H~af~----------------Y~~~~yGl~~~~~~~~~~~~ep 217 (294)
-. =|.. +-.++.-|+.-| -|++.-|+++--+ ..+++.+.
T Consensus 104 lp~d~~D~~nailEIrAGAGGtEA~dwA~mL~RMY~RwAE~~g~k~evi-d~s~ge~a 160 (360)
T PRK00591 104 LPKDPNDDKNVILEIRAGTGGDEAALFAGDLFRMYSRYAERQGWKVEIL-SASEGELG 160 (360)
T ss_pred CCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEE-CCCCCCCC
T ss_conf 7999775678589996588874899999999999999998679971560-25776556
No 175
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=35.15 E-value=33 Score=14.98 Aligned_cols=65 Identities=23% Similarity=0.237 Sum_probs=44.5
Q ss_pred CCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 5214577529728872268864000789999999762016971899827899799999999829934443
Q gi|254780537|r 193 CLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV 262 (294)
Q Consensus 193 af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294)
++.-.++.+|++.+.+.+ ++...+|.-++.+.+.+. +++.++.-.-.+++.++.+++ .|+.++++
T Consensus 139 ayAlaae~lg~~~iYLEg--SGa~v~~e~V~~vk~~l~--~~~LivGGGIrs~e~a~~~~~-AgAD~IVv 203 (219)
T cd02812 139 AYALAAEYLGMPIVYLEY--SGAYGPPEVVRAVKKVLG--DTPLIVGGGIRSGEQAKEMAE-AGADTIVV 203 (219)
T ss_pred HHHHHHHHHCCCEEEEEC--CCCCCCHHHHHHHHHHCC--CCEEEEECCCCCHHHHHHHHH-CCCCEEEE
T ss_conf 999999982993899956--899799999999998467--970999289799999999998-69999998
No 176
>PRK10307 predicted glycosyl transferase; Provisional
Probab=35.04 E-value=33 Score=14.97 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=11.8
Q ss_pred HHHHHHHHCCCEEEEEEEE
Q ss_conf 9999998518914899962
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLV 51 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~li 51 (294)
.+++++.++....+|+.+.
T Consensus 21 ~~~La~~L~~~GheV~Vit 39 (415)
T PRK10307 21 TGEMAEWLAARGHEVRVIT 39 (415)
T ss_pred HHHHHHHHHHCCCEEEEEE
T ss_conf 9999999997899899997
No 177
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=34.85 E-value=33 Score=14.95 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=44.7
Q ss_pred HHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 775297288722688640007899999997620169718998278997999999998299344
Q gi|254780537|r 198 AEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG 260 (294)
Q Consensus 198 ~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~ 260 (294)
.+.-++.+..+.+ +..+....-..++.+.+|+.+..+|.-.-.-=+..+++|+++.|+|++
T Consensus 141 vrstdl~vL~l~~--~~~~~~~~l~~~~~~a~~edgAeaIiLGCAGms~la~~Lq~~~gvPVI 201 (230)
T COG4126 141 VRSTDLPVLALEG--PPEEAEALLVIEAAEALKEDGAEAIILGCAGMSDLADQLQKAFGVPVI 201 (230)
T ss_pred EEECCCCCCCCCC--CHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf 2337987010369--767899999999999865328888998582177799999997199846
No 178
>TIGR00559 pdxJ pyridoxal phosphate biosynthetic protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised , , . This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm.
Probab=34.78 E-value=33 Score=14.94 Aligned_cols=41 Identities=12% Similarity=0.222 Sum_probs=27.8
Q ss_pred HHH-HHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 899-999997620169718-99827899799999999829934443
Q gi|254780537|r 219 PSM-MRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGV 262 (294)
Q Consensus 219 ~~~-l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294)
.++ |.++++.+++.||.+ ||.+++ ...++. |.|+|++.+++
T Consensus 111 ~~dkL~~~~~~~~~~GI~vSlFId~~--~d~i~~-A~e~g~~~iE~ 153 (265)
T TIGR00559 111 LKDKLKELVKRLHEAGIEVSLFIDAD--KDQISA-AAEVGADRIEI 153 (265)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCC--HHHHHH-HHHCCCCEEEE
T ss_conf 04679999999986798587742544--688899-99708984885
No 179
>pfam00731 AIRC AIR carboxylase. Members of this family catalyse the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyse the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.
Probab=34.69 E-value=33 Score=14.93 Aligned_cols=46 Identities=22% Similarity=0.222 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 0789999999762016971899827899799999999829934443
Q gi|254780537|r 217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV 262 (294)
Q Consensus 217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294)
.+|.++.++.+..++++++++++--..+..+.-.+|..|..|++++
T Consensus 39 Rtp~~l~~~~~~~~~~g~~ViIa~AG~aa~LpGvvA~~T~~PVIgV 84 (150)
T pfam00731 39 RTPERLFEYAKEAEARGIKVIIAGAGGAAHLPGMVAALTTLPVIGV 84 (150)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHCCCCEEEC
T ss_conf 3878999999999975973999956842012000176479966857
No 180
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=34.66 E-value=34 Score=14.93 Aligned_cols=24 Identities=17% Similarity=0.433 Sum_probs=16.3
Q ss_pred CHHHHHHHCCCCEEEEECCCCCHH
Q ss_conf 712457760378999988761068
Q gi|254780537|r 63 TSADAIKIQNADLILCNGLHLEET 86 (294)
Q Consensus 63 tp~d~~~i~~Adliv~~G~~~E~~ 86 (294)
++.....+++||+++..|..|..+
T Consensus 271 ~~~a~~~l~~aDlvl~lG~~l~~~ 294 (588)
T CHL00099 271 TAYANFAVSECDLLIALGARFDDR 294 (588)
T ss_pred CHHHHHHHHCCCHHEECCCCCCCC
T ss_conf 999987764241110048867866
No 181
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=34.50 E-value=34 Score=14.91 Aligned_cols=65 Identities=15% Similarity=0.164 Sum_probs=37.7
Q ss_pred CCCCEEEEE---CHHHHHHHHHHCCCE-EEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC
Q ss_conf 588289997---528999999851891-48999626889801202271245776037899998876106899999742
Q gi|254780537|r 21 TQKKVVLSS---FSIIGDITQNIAKDL-VTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNL 94 (294)
Q Consensus 21 ~~~~~Vv~s---~~pl~~iv~~I~gd~-v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~ 94 (294)
+++++|.+. ..|+..+.++--..+ ++|..=. |.+... .+++..-..+|+|+.-. +.|+.++....
T Consensus 29 ~~~i~VfAAaSL~~~l~~i~~~F~~~~~~~V~~~f--~gS~~l----~~qIe~Ga~~D~fiSa~---~~~~~~l~~~g 97 (258)
T COG0725 29 AATITVFAAASLTDALEEIAKQFEKETGVKVEVEF--GGSGAL----ARQIEQGAPADLFISAD---DAYMDKLEDKG 97 (258)
T ss_pred CCEEEEEEEHHHHHHHHHHHHHHHHHHCCEEEEEE--CCHHHH----HHHHHCCCCCCEEEECC---HHHHHHHHHCC
T ss_conf 74099998156689999999999998798799996--138999----99997599868799888---88899998668
No 182
>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr
Probab=34.16 E-value=34 Score=14.88 Aligned_cols=20 Identities=10% Similarity=0.366 Sum_probs=9.1
Q ss_pred CHHHHHHHHHHHCCCCCEEE
Q ss_conf 78999999976201697189
Q gi|254780537|r 218 SPSMMRHAINQMRSHKIKFI 237 (294)
Q Consensus 218 s~~~l~~~~~~ik~~~v~~i 237 (294)
+..++.++.+.|++.+.++|
T Consensus 202 ~~~~~~~~~~~i~~~~~rVi 221 (348)
T cd06350 202 TEEDIKRILKKLKSSTARVI 221 (348)
T ss_pred CHHHHHHHHHHHHCCCCCEE
T ss_conf 87899999999970787199
No 183
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=34.13 E-value=17 Score=16.92 Aligned_cols=17 Identities=12% Similarity=0.136 Sum_probs=8.0
Q ss_pred EEEEECCCCHHHHHHCC
Q ss_conf 69982665214577529
Q gi|254780537|r 186 WFVTSEGCLVYLAEDFG 202 (294)
Q Consensus 186 ~~v~~H~af~Y~~~~yG 202 (294)
.|+.....++|..+++.
T Consensus 430 ~F~~g~~~T~~i~r~~~ 446 (645)
T COG4770 430 RFRGGDLDTGFIAREIE 446 (645)
T ss_pred CCCCCCCCCEEEEECCC
T ss_conf 40047776302111023
No 184
>PRK08316 acyl-CoA synthetase; Validated
Probab=34.06 E-value=34 Score=14.87 Aligned_cols=16 Identities=6% Similarity=-0.041 Sum_probs=5.4
Q ss_pred CEEEEECHHHHHHHHH
Q ss_conf 2899975289999998
Q gi|254780537|r 24 KVVLSSFSIIGDITQN 39 (294)
Q Consensus 24 ~~Vv~s~~pl~~iv~~ 39 (294)
++++.+...+...++.
T Consensus 109 ~~~vi~~~~~~~~~~~ 124 (525)
T PRK08316 109 AKLLLVDPALAPRAEA 124 (525)
T ss_pred CEEEEECHHHHHHHHH
T ss_conf 8699988778888999
No 185
>pfam02153 PDH Prephenate dehydrogenase. Members of this family are prephenate dehydrogenases EC:1.3.1.12 involved in tyrosine biosynthesis.
Probab=33.97 E-value=34 Score=14.86 Aligned_cols=82 Identities=10% Similarity=0.050 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCE-------EEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 5337899886307844736998266521457752972-------887226886400078999999976201697189982
Q gi|254780537|r 168 NSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFK-------SLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE 240 (294)
Q Consensus 168 ~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~-------~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e 240 (294)
.....+...+...-.....||..||=+|- +..|+. .-...-+.|.....+..+..+.++.+.-|-+++...
T Consensus 80 SvK~~i~~~~~~~~~~~~~fvg~HPMaG~--e~sG~~~a~~~LF~~~~~il~p~~~~~~~~~~~v~~l~~~lGa~~~~m~ 157 (258)
T pfam02153 80 SVKVEIVKDAEQLLSDGVGFIPGHPMAGT--EKSGPDAARANLFENAPVILTPTEKTDTEALALVRELLEGIGAKVILMD 157 (258)
T ss_pred CCCHHHHHHHHHHCCCCCCEECCCCCCCC--CCCCCHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 55579999999855567864605886478--7677011001254171599618888879999999999998699699827
Q ss_pred CCCCHHHHHHH
Q ss_conf 78997999999
Q gi|254780537|r 241 STNSDQPAKQV 251 (294)
Q Consensus 241 ~~~~~~~~~~i 251 (294)
+....+.+..+
T Consensus 158 ~~~HD~~~A~~ 168 (258)
T pfam02153 158 PEEHDRVVALV 168 (258)
T ss_pred HHHHHHHHHHH
T ss_conf 77788999999
No 186
>TIGR00839 aspA aspartate ammonia-lyase; InterPro: IPR004708 A number of enzymes, belonging to the lyase class, for which fumarate is a substrate have been shown , to share a short conserved sequence around a methionine which is probably involved in the catalytic activity of this type of enzymes. Aspartate ammonia-lyase catalyses the conversion of aspartate to fumarate.; GO: 0008797 aspartate ammonia-lyase activity, 0006531 aspartate metabolic process.
Probab=33.94 E-value=13 Score=17.68 Aligned_cols=184 Identities=16% Similarity=0.124 Sum_probs=92.6
Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHCCCCCC-----CCCCCCCCCHHHHHHCCCCCCCCCHHHHHH-------HHHHHHHH
Q ss_conf 603789999887610689999974235575-----211123742022210012334630111221-------35678999
Q gi|254780537|r 70 IQNADLILCNGLHLEETYMKYFTNLKKGTK-----IITVTDGINPIGVSEDTSVDSEPNPHAWMS-------LTNAMIYI 137 (294)
Q Consensus 70 i~~Adliv~~G~~~E~~~~~~~~~~~~~~~-----~i~~~~~i~~~~~~~~~~~~~~~dpH~Wld-------p~~~~~~a 137 (294)
++=+|.++.+|.-+|.|..+.++-...... -|-+.-+++.+.+..+...+-.+|-|+=.| |...+..+
T Consensus 72 v~AcDe~l~~GK~~DQFivD~~QGGAGTS~NMN~NEViaN~ALE~mGH~KGeY~~~~PndHVN~sQStNDayPta~~Ia~ 151 (469)
T TIGR00839 72 VAACDEILETGKCHDQFIVDVIQGGAGTSVNMNTNEVIANLALEIMGHKKGEYQFLNPNDHVNRSQSTNDAYPTALRIAV 151 (469)
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 99999998568710022244333887654223067899998887625514662120886510224666664401789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC-CCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCC
Q ss_conf 999999864318889999998998630145533789988630-7844736998266521457752972887226886400
Q gi|254780537|r 138 ENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEK-VDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSE 216 (294)
Q Consensus 138 ~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~-~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~e 216 (294)
-.--..|++.--.=.+.|.+-+++|..=| +=-++++.+ +|- + +.++|--- ++. -+
T Consensus 152 y~~L~kL~~~~~~l~~~F~~KA~EF~~vi----KMGRTqLQDAVPm------t-------lGQEF~ay--~~~-----l~ 207 (469)
T TIGR00839 152 YKSLEKLVDTMEDLRDAFKQKAKEFASVI----KMGRTQLQDAVPM------T-------LGQEFEAY--ALL-----LE 207 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCCCCCCCCC------C-------CCHHHHHH--HHH-----HH
T ss_conf 99999999999999999988889988886----2167545453235------5-------56048999--999-----99
Q ss_pred CCHHHHHHHHHHHCCC--CCEEEEEECCCC----HHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHH
Q ss_conf 0789999999762016--971899827899----799999999829934443201237877788689999
Q gi|254780537|r 217 RSPSMMRHAINQMRSH--KIKFIFSESTNS----DQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLD 280 (294)
Q Consensus 217 ps~~~l~~~~~~ik~~--~v~~if~e~~~~----~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~ 280 (294)
---+++++.++.+.|= |..+|-+--+.+ +-+.+.||+=||.+.+. -|.|=+.-...+-|..
T Consensus 208 ~di~~~~~~~~~l~EvNlGaTAiGTGlN~~~~Y~~lvvK~laevtG~p~V~---A~~LieAT~~tgAYv~ 274 (469)
T TIGR00839 208 RDIKNIKRTRQLLLEVNLGATAIGTGLNTPPEYIKLVVKKLAEVTGLPLVP---AENLIEATQDTGAYVE 274 (469)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEECCCCCCCHHHHHHHHHHHHHCCCCCCCC---HHHHHHHHCCCCCEEE
T ss_conf 999999999877877634751021577877113899988764116886425---2357775338996266
No 187
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional
Probab=33.76 E-value=35 Score=14.84 Aligned_cols=68 Identities=21% Similarity=0.141 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH
Q ss_conf 78999999999864318889999998998630145533789988630784473699826652145775
Q gi|254780537|r 133 AMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAED 200 (294)
Q Consensus 133 ~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~ 200 (294)
.+.-.+.|-..|-+++-+++...-.=-++|.++=.-+-..-+..+..+|.=....+..||+++|+...
T Consensus 30 ~i~dfe~IQ~~Le~ld~ecakeqm~iQrkfdekKrP~f~kR~~IIeKIPgFW~~al~~HP~ls~Li~e 97 (288)
T PTZ00008 30 FMKDFEDIQKDIEQLDIKCAHEQMNIQKQYDEKKKPLFEKRDEIIEKIPGFWANTLRKHPALSDIVPE 97 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCHHHHHHHHCCCHHHHCCCC
T ss_conf 57789999999999889999999999999887507468899999986623999998719616640313
No 188
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=33.64 E-value=35 Score=14.82 Aligned_cols=31 Identities=16% Similarity=0.139 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 6431888999999899863014553378998
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKT 175 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~ 175 (294)
.-+.|.++-......+++.-+++.-.+....
T Consensus 244 ~~~~p~~a~l~lRGL~TL~lRm~r~~~nA~~ 274 (397)
T PRK07504 244 PSLSPFNAWVLLKGLETLAVRVRQQTESAAA 274 (397)
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 8788378899871677299999999999999
No 189
>PRK10290 superoxide dismutase; Provisional
Probab=33.42 E-value=30 Score=15.29 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=12.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCC
Q ss_conf 926999999999860464335
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATT 21 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~ 21 (294)
|||+.++++.++++.++++.+
T Consensus 1 mk~~~~~~~~l~~~~~~~a~~ 21 (173)
T PRK10290 1 MKRFSLAILALVVCTGAQAAS 21 (173)
T ss_pred CCHHHHHHHHHHHHHHHHHCC
T ss_conf 910799999999976665144
No 190
>PRK07050 cystathionine beta-lyase; Provisional
Probab=33.29 E-value=35 Score=14.79 Aligned_cols=85 Identities=6% Similarity=0.034 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCC------CHHHHHHC-CCEEEEECCCCCCCCC
Q ss_conf 6431888999999899863014553378998863078447369982665------21457752-9728872268864000
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGC------LVYLAEDF-GFKSLYLWPINSDSER 217 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~a------f~Y~~~~y-Gl~~~~~~~~~~~~ep 217 (294)
.-+.|..+-......+++.-+++.-.+......+-+....++--++||. +..+.+.+ |.. ++..+.-....
T Consensus 244 ~~~sp~~a~l~~rGL~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~~a~~~~~g~g--g~~s~~~~~~~ 321 (394)
T PRK07050 244 IGVSADDCSLVLRGLPSMQVRFDAHSRSALELAQWLKARPEIATVLHPALPDCPGHAFWMRDFTGAG--GLFSVVFDERY 321 (394)
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHCCCCC--EEEEEEECCCC
T ss_conf 7789899999974898478889999999999999986189810898999889815999997579996--28999975667
Q ss_pred CHHHHHHHHHHHCC
Q ss_conf 78999999976201
Q gi|254780537|r 218 SPSMMRHAINQMRS 231 (294)
Q Consensus 218 s~~~l~~~~~~ik~ 231 (294)
++..+.++.+.+|=
T Consensus 322 ~~~~~~~f~~~l~l 335 (394)
T PRK07050 322 DAAQVDAFVEALEL 335 (394)
T ss_pred CHHHHHHHHHHCCC
T ss_conf 99999999983882
No 191
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR; InterPro: IPR012704 At least five distinct pathways exist for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR which is, in most cases, divergently transcribed from the operon that encodes the genes involved in the methylcitric acid cycle of propionate catabolism. This protein is required for the expression of the proteins involved in this pathway . 2-methylcitric acid, an intermediate in this pathway, has been proposed to be a co-activator of PrpR .; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0019629 propionate catabolic process 2-methylcitrate cycle, 0005737 cytoplasm.
Probab=33.29 E-value=35 Score=14.78 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=34.2
Q ss_pred CCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 6652145775297288722688640007899999997620169718998278997999999998299344
Q gi|254780537|r 191 EGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG 260 (294)
Q Consensus 191 H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~ 260 (294)
-|++.-|.+.|||.+. .-.=.|..|=..-+..+|..||++|+ ..-++--+|++.|...+
T Consensus 109 ~p~~~~Fq~~f~l~~~------~r~y~t~eDAr~~v~~Lra~G~~~vV-----G~GL~tDlA~~AgL~gv 167 (658)
T TIGR02329 109 VPALREFQKAFNLDIE------QRSYVTEEDARSCVNDLRASGIEVVV-----GAGLITDLAEQAGLVGV 167 (658)
T ss_pred HHHHHHHHHHHCCCHH------HHHHCCHHHHHHHHHHHHHCCCEEEE-----CCCHHHHHHHHCCCCEE
T ss_conf 4679999998634168------87504677899999999768975988-----76568888876796478
No 192
>pfam08139 LPAM_1 Prokaryotic membrane lipoprotein lipid attachment site. In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognizes a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached.
Probab=32.80 E-value=33 Score=14.95 Aligned_cols=20 Identities=15% Similarity=0.246 Sum_probs=12.0
Q ss_pred CHHHHHHHHHHHHHCCCCCC
Q ss_conf 92699999999986046433
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASAT 20 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~ 20 (294)
|||.+..+++.+.+.+|++.
T Consensus 1 Mkk~~~l~~~~l~LagCas~ 20 (26)
T pfam08139 1 MKKLLLLLLALLLLAGCASX 20 (26)
T ss_pred CHHHHHHHHHHHHHHCCCCC
T ss_conf 96699999999998233200
No 193
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase; InterPro: IPR010138 This entry represents LpxH, or UDP-2,3-diacylglucosamine hydrolase (or pyrophosphatase), which is an essential enzyme in Escherichia coli that catalyses the fourth step in lipid A biosynthesis. This reaction involves pyrophosphate bond hydrolysis of the precursor UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate and UMP . Several Gram-negative bacteria have homologues of LpxH and/or LpxH2, while others have only distant orthologues of LpxH or LpxH2, or lack these enzymes altogether .; GO: 0016462 pyrophosphatase activity, 0009245 lipid A biosynthetic process, 0005737 cytoplasm.
Probab=32.77 E-value=36 Score=14.73 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=32.8
Q ss_pred CCCCC--HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 40007--899999997620169718998278997999999998299344
Q gi|254780537|r 214 DSERS--PSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG 260 (294)
Q Consensus 214 ~~eps--~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~ 260 (294)
+.+|| .+.+++.++.+-+.||+|.|.-.|=.==+-+.-|+|+|.+..
T Consensus 48 DD~~~~l~~~va~~~r~vsd~GV~~YF~~GNRDFLiG~~Far~aG~~LL 96 (241)
T TIGR01854 48 DDDPSALARSVAEAIRAVSDQGVPCYFMHGNRDFLIGKRFAREAGMTLL 96 (241)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCEEC
T ss_conf 8972179999999999873289079840598515666899997088107
No 194
>COG5633 Predicted periplasmic lipoprotein [General function prediction only]
Probab=32.63 E-value=27 Score=15.55 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=13.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9269999999998604643358
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQ 22 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~ 22 (294)
|+|.+++.+.++.+.+|++..+
T Consensus 1 Mrk~~~~~l~~~lLvGCsS~~~ 22 (123)
T COG5633 1 MRKLCLLSLALLLLVGCSSHQE 22 (123)
T ss_pred CCEEHHHHHHHHHHHCCCCCCC
T ss_conf 9300389999999420478877
No 195
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase; InterPro: IPR006362 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobM and CibF precorrin-4 C11-methyltransferase (2.1.1.133 from EC), both as stand-alone enzymes and when CobJ forms part of a bifunctional enzyme. In the aerobic pathway, CobM catalyses the methylation of precorrin-4 at C-11 to yield precorrin-5. The extruded acyl group is then removed in the subsequent step catalysed by CobF. In the anaerobic pathway, CibF catalyses the methylation of cobalt-precorrin-4 to cobalt-precoriin-5 . Nomenclature note: occasionally precorrin-4 C11-methyltransferase is one of two methyltransferases often referred to as precorrin-3 methylase (the other is precorrin-3 methylase (the other is precorrin-4 C11-methyltransferase, 2.1.1.131 from EC). ; GO: 0046026 precorrin-4 C11-methyltransferase activity, 0009236 cobalamin biosynthetic process.
Probab=32.62 E-value=23 Score=15.97 Aligned_cols=39 Identities=23% Similarity=0.413 Sum_probs=25.1
Q ss_pred CCHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 2712457760378999988-761068999997423557521112
Q gi|254780537|r 62 VTSADAIKIQNADLILCNG-LHLEETYMKYFTNLKKGTKIITVT 104 (294)
Q Consensus 62 ~tp~d~~~i~~Adliv~~G-~~~E~~~~~~~~~~~~~~~~i~~~ 104 (294)
.|-+=.+-|++||+|+|=| +=-+.+ ++...++.++++.+
T Consensus 14 ITvkG~~lle~ADvilYAGSLV~~~~----L~~~r~~Ae~~~sA 53 (252)
T TIGR01465 14 ITVKGRKLLESADVILYAGSLVPPEL----LAHCRPGAEVVNSA 53 (252)
T ss_pred HHHHHHHHHHCCCEEEECCCCCHHHH----HHHCCCCCEEEECC
T ss_conf 75999988631997999687781789----97278988886050
No 196
>PRK09028 cystathionine beta-lyase; Provisional
Probab=32.43 E-value=36 Score=14.69 Aligned_cols=31 Identities=6% Similarity=0.006 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 6431888999999899863014553378998
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKT 175 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~ 175 (294)
.-+.|.++-......+++.-+++.-.+....
T Consensus 239 ~~~sP~~a~L~lRGL~TL~lRm~r~~~nA~~ 269 (394)
T PRK09028 239 QCTSPDDVYLAARGLRTLGVRLAQHEKNALK 269 (394)
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 7788789999983678599999999999999
No 197
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=32.39 E-value=36 Score=14.69 Aligned_cols=19 Identities=11% Similarity=0.179 Sum_probs=10.4
Q ss_pred HHHHHHHHCCCEEEEEEEE
Q ss_conf 9999998518914899962
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLV 51 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~li 51 (294)
..++++.++....+|+.+.
T Consensus 21 v~~La~~L~~~Gh~V~v~t 39 (363)
T cd04955 21 VEELAPRLVARGHEVTVYC 39 (363)
T ss_pred HHHHHHHHHHCCCEEEEEE
T ss_conf 9999999997799799998
No 198
>pfam02669 KdpC K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.
Probab=32.35 E-value=6 Score=19.97 Aligned_cols=98 Identities=14% Similarity=0.132 Sum_probs=44.0
Q ss_pred EEE-CCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC--CCHHHHHHCCCCCCCCCHH
Q ss_conf 962-6889801202271245776037899998876106899999742355752111237--4202221001233463011
Q gi|254780537|r 49 TLV-EAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDG--INPIGVSEDTSVDSEPNPH 125 (294)
Q Consensus 49 ~li-~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~--i~~~~~~~~~~~~~~~dpH 125 (294)
.|+ ++=++|.-|.+.|+.+..- .-|..-.-|-++-+.-.++.+........+...+. -..++.+-=....++-|||
T Consensus 53 ~LIgQ~F~~~~yF~~RPSa~~~~-~y~~~~SggSNl~psnp~l~~~v~~r~~~~~~~~~~~~~~vP~DlVTaSgSGLDPh 131 (188)
T pfam02669 53 ALIGQTFTEEGYFHSRPSAINYS-EYPTGASGGSNLAPSNPDLLSRIAARVEAQRLENLPAAVQVPVDLVTSSGSGLDPH 131 (188)
T ss_pred HHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCCCCC
T ss_conf 32277788998767898667799-98844466657799999999999999999998778988889788840666668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1221356789999999998643188
Q gi|254780537|r 126 AWMSLTNAMIYIENIRKALTALDPS 150 (294)
Q Consensus 126 ~Wldp~~~~~~a~~I~~~L~~~dP~ 150 (294)
+ ||.++..++.-|+++ ..++++
T Consensus 132 I--S~aaA~~Qv~RVA~a-rgls~~ 153 (188)
T pfam02669 132 I--SPAAAQAQFPRVAKA-RNISPQ 153 (188)
T ss_pred C--CHHHHHHHHHHHHHH-HCCCHH
T ss_conf 8--999999999999998-496999
No 199
>pfam09403 FadA Adhesion protein FadA. FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices.
Probab=32.20 E-value=23 Score=15.98 Aligned_cols=16 Identities=19% Similarity=0.521 Sum_probs=6.2
Q ss_pred CHHHHHHHHHHHHHCC
Q ss_conf 9269999999998604
Q gi|254780537|r 1 MLRYFICLLFSYIPMS 16 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~ 16 (294)
|+|+|++.+++++..+
T Consensus 1 MkK~ll~~~llls~~s 16 (126)
T pfam09403 1 MKKILLCSMLILSSLS 16 (126)
T ss_pred CHHHHHHHHHHHHHHH
T ss_conf 9169999999999999
No 200
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=32.07 E-value=37 Score=14.65 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=45.6
Q ss_pred HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEE-EEECC--------------CCHHHHHHHHHHHCCCEEE
Q ss_conf 57752972887226886400078999999976201697189-98278--------------9979999999982993444
Q gi|254780537|r 197 LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFI-FSEST--------------NSDQPAKQVAYETNASYGG 261 (294)
Q Consensus 197 ~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~i-f~e~~--------------~~~~~~~~ia~e~~~~~~~ 261 (294)
+.+.......-+. ..| ...|..+..+.+++.++.+++.+ +.|.- +...-++.++++.+++..+
T Consensus 86 ~~~~~~~d~~IvV-TTP-~~~s~~Da~r~i~~~~~~~i~i~GvVeNMs~~~c~~c~~~~~ifg~~~~~~la~~~~i~~Lg 163 (169)
T cd02037 86 LAQSLPIDGAVIV-TTP-QEVALDDVRKAIDMFKKVNIPILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLG 163 (169)
T ss_pred HHHHCCCCCEEEE-ECC-CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEE
T ss_conf 9875056747999-469-58899999999999997599707999879666079999735278884499999995999898
Q ss_pred EEECCC
Q ss_conf 320123
Q gi|254780537|r 262 VLYVDS 267 (294)
Q Consensus 262 ~~~~d~ 267 (294)
.++.|+
T Consensus 164 ~IP~dp 169 (169)
T cd02037 164 KIPLDP 169 (169)
T ss_pred ECCCCC
T ss_conf 728999
No 201
>TIGR00885 fucP L-fucose:H+ symporter permease; InterPro: IPR005275 This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by at least four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. .
Probab=32.04 E-value=14 Score=17.52 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=51.5
Q ss_pred CCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCC----CCCCCHHHHHHHCCCCEEEEEC
Q ss_conf 358828999752899999985189148999626889801----2022712457760378999988
Q gi|254780537|r 20 TTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSH----SYQVTSADAIKIQNADLILCNG 80 (294)
Q Consensus 20 ~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH----~ye~tp~d~~~i~~Adliv~~G 80 (294)
++.+++..=|++|++++.--..|.+.=...+-+.++|.. --.+++++...++++|+.....
T Consensus 128 atrRLNlAQsFNp~Gsi~g~~va~~lil~nl~~~~~D~~Gnlif~~ls~~e~~aik~sdla~~~~ 192 (427)
T TIGR00885 128 ATRRLNLAQSFNPLGSIIGMVVAQQLILSNLESQSQDVLGNLIFDKLSEEELSAIKESDLASVRT 192 (427)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 21022256302157899999999898863288766425787898842978888864655766612
No 202
>PRK04405 prsA peptidylprolyl isomerase; Provisional
Probab=31.98 E-value=33 Score=14.93 Aligned_cols=18 Identities=17% Similarity=0.062 Sum_probs=9.6
Q ss_pred CCHHHHHHHHHHHCCCEE
Q ss_conf 997999999998299344
Q gi|254780537|r 243 NSDQPAKQVAYETNASYG 260 (294)
Q Consensus 243 ~~~~~~~~ia~e~~~~~~ 260 (294)
+-.+++..+-+..++++-
T Consensus 263 ~~~~vi~k~lk~anVkik 280 (298)
T PRK04405 263 VMQNVISKVLKKANVSIK 280 (298)
T ss_pred HHHHHHHHHHHHCCCCCC
T ss_conf 999999999997798715
No 203
>TIGR01437 selA_rel pyridoxal phosphate-dependent enzyme, putative; InterPro: IPR006337 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry represents a group of proteins that are related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. .
Probab=31.84 E-value=37 Score=14.63 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHH--HCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 5289999998518914899962688980120227124577--60378999988761068999997423557521112374
Q gi|254780537|r 30 FSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIK--IQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGI 107 (294)
Q Consensus 30 ~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~--i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i 107 (294)
..|+.++++ ||..+ .|=.|+..-.. -|.-.|+.+ =..|||++|+|. |.+....++.-++--.+.|
T Consensus 168 l~P~~~~~~-vA~~~-~vPlIVDAAAe----iPP~edL~~y~~~GaDlViYSGa-------Ka~~gpsnsGl~vGrK~~I 234 (391)
T TIGR01437 168 LLPVEEVIR-VAQSY-KVPLIVDAAAE----IPPEEDLTRYLKAGADLVIYSGA-------KALEGPSNSGLVVGRKDYI 234 (391)
T ss_pred CCCHHHHHH-HHHHC-CCCEEEECCCC----CCCHHHHHHHHHHCCCEEEECCH-------HHCCCCCCCCEEECHHHHH
T ss_conf 663899999-99756-89889862568----98801468999716875553203-------4504643263233008899
Q ss_pred CHHHHHHCCCCCCCCCH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 20222100123346301-112------21356789999999998643188899999989986301455337899886
Q gi|254780537|r 108 NPIGVSEDTSVDSEPNP-HAW------MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRI 177 (294)
Q Consensus 108 ~~~~~~~~~~~~~~~dp-H~W------ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~ 177 (294)
.-....+.+..+.++|- .++ .+=+|+...+.++.+.|.--+-.-...-+.+++.+.+-+.+++..+..+.
T Consensus 235 ~~~~~~g~gseenGPDGtrvfIgRaMKIgKe~ivg~v~AvE~yl~~~~e~~~~k~~~~l~p~a~aIs~i~~l~a~iv 311 (391)
T TIGR01437 235 AAAKSQGKGSEENGPDGTRVFIGRAMKIGKENIVGLVAAVERYLTFNDEDWLRKQRSRLDPIAEAISDIDDLMAKIV 311 (391)
T ss_pred HHHHHCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEE
T ss_conf 99986288765668986568873265103689999999999985168726789999984369999852410112356
No 204
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=31.48 E-value=38 Score=14.59 Aligned_cols=107 Identities=13% Similarity=0.083 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEE---------EECCCCHHHHHH
Q ss_conf 35678999999999864318889999998998630145533789988630784473699---------826652145775
Q gi|254780537|r 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFV---------TSEGCLVYLAED 200 (294)
Q Consensus 130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v---------~~H~af~Y~~~~ 200 (294)
++........+++.+.+- +.+ +++.+++++-...++++....+.. +.++ ..+..++.+.+.
T Consensus 91 ~~~~~~~i~~lg~i~g~~--~~A-------~~~i~~~~~~l~~i~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~~i~~ 160 (245)
T cd01144 91 LDDILADIRRLGTLAGRP--ARA-------EELAEALRRRLAALRKQYASKPPP-RVFYQEWIDPLMTAGGDWVPELIAL 160 (245)
T ss_pred HHHHHHHHHHHHHHCCCH--HHH-------HHHHHHHHHHHHHHHHHHCCCCCE-EEEEEECCCCCEECCCCCHHHHHHH
T ss_conf 999999999999874974--689-------999999999999999763267741-6898605787365176556899998
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 29728872268864000789999999762016971899827899799999999
Q gi|254780537|r 201 FGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAY 253 (294)
Q Consensus 201 yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~ 253 (294)
.|.+.+.-.......+.|+..| -+.+..+||.-....+...+.+.+
T Consensus 161 aG~~N~~~~~~~~~~~vs~E~i-------~~~nPDvI~v~~~~~~~~~~~~~~ 206 (245)
T cd01144 161 AGGVNVFADAGERSPQVSWEDV-------LAANPDVIVLSPCGFGFTPAILRK 206 (245)
T ss_pred CCCCEEHHHCCCCCCCCCHHHH-------HHHCCCEEEEECCCCCCHHHHHHC
T ss_conf 3881003222678777578899-------985999999958987516899870
No 205
>PTZ00151 translationally controlled tumor protein; Provisional
Probab=31.47 E-value=38 Score=14.59 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 5678999999999864318889999998998630145
Q gi|254780537|r 131 TNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIR 167 (294)
Q Consensus 131 ~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~ 167 (294)
...+.+...|...|.+..|+.-+.|.+++..+.+.+.
T Consensus 91 ~yiK~YmK~v~~kLee~~perV~~Fk~~a~~~vK~il 127 (173)
T PTZ00151 91 SYIKKYIQRIVAYLEEKNPDRVEPFKTKAQPFVKHVL 127 (173)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999863298899999998899999997
No 206
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=31.29 E-value=38 Score=14.57 Aligned_cols=45 Identities=20% Similarity=0.222 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf 078999999976201697189982789979999999982993444
Q gi|254780537|r 217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGG 261 (294)
Q Consensus 217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~ 261 (294)
.||..+.+..+..++.++++|+.--.-...+---+|..|-.++++
T Consensus 41 RTPe~m~~ya~~a~~~g~~viIAgAGgAAHLPGmvAa~T~lPViG 85 (162)
T COG0041 41 RTPEKMFEYAEEAEERGVKVIIAGAGGAAHLPGMVAAKTPLPVIG 85 (162)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEECCCCHHHCCHHHHHCCCCCEEE
T ss_conf 798999999999987897599965751110620265558798674
No 207
>TIGR02992 ectoine_eutC ectoine utilization protein EutC; InterPro: IPR014334 Members of this entry are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, Pseudomonas putida and Sinorhizobium meliloti 1021, where it is known to be induced by ectoine). Members belong to the ornithine cyclodeaminase/mu-crystallin family..
Probab=31.22 E-value=38 Score=14.56 Aligned_cols=64 Identities=14% Similarity=0.156 Sum_probs=26.7
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57760378999988761068999997423557521112374202221001233463011122135678999999999864
Q gi|254780537|r 67 AIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTA 146 (294)
Q Consensus 67 ~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~ 146 (294)
.++++.||++|+.-..-.|-+.. +-++++.-++.. ..|..|.++.|||+ ..+.-..++|.+++
T Consensus 189 ~~A~~~ADI~vTtTP~~~Pvl~a--~wL~pGqh~tAM---------GsD~EHKnE~~P~~------~a~a~~YVaD~~~Q 251 (326)
T TIGR02992 189 RAALSGADIIVTTTPSETPVLKA--EWLEPGQHVTAM---------GSDAEHKNEIDPAV------IAKADLYVADRLSQ 251 (326)
T ss_pred HHHCCCCCEEEECCCCCCCCHHH--HHCCCCCEEEEE---------CCCCCCCCCCCHHH------HHHHHCCCCCCHHH
T ss_conf 86236688798748798730207--336788789860---------67701223436478------85411156665688
Q ss_pred H
Q ss_conf 3
Q gi|254780537|r 147 L 147 (294)
Q Consensus 147 ~ 147 (294)
.
T Consensus 252 t 252 (326)
T TIGR02992 252 T 252 (326)
T ss_pred H
T ss_conf 7
No 208
>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.
Probab=31.16 E-value=30 Score=15.24 Aligned_cols=21 Identities=10% Similarity=0.233 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCC
Q ss_conf 926999999999860464335
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATT 21 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~ 21 (294)
|++.++.+++.+++++|....
T Consensus 1 m~~~i~~i~~~~~~~sC~~~e 21 (177)
T TIGR03516 1 MKHLIAVILLLLLLLGCKTPE 21 (177)
T ss_pred CCCHHHHHHHHHHHHHCCCCC
T ss_conf 943047898989987269964
No 209
>TIGR01522 ATPase-IIA2_Ca calcium-transporting P-type ATPase, PMR1-type; InterPro: IPR006413 This family describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates . The calcium P-type ATPases have been characterised as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump represented by IPR006408 from INTERPRO. ; GO: 0005388 calcium-transporting ATPase activity, 0006816 calcium ion transport, 0016021 integral to membrane.
Probab=31.10 E-value=38 Score=14.55 Aligned_cols=90 Identities=14% Similarity=0.162 Sum_probs=61.9
Q ss_pred HHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 99863014553378998863078447369982665214577529728872268864000789999999762016971899
Q gi|254780537|r 159 AREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIF 238 (294)
Q Consensus 159 ~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if 238 (294)
..+|.++..+--++.+...++ ++..++ ||.|. ...+|...|+.|+.. |.--++++.++.+-..||++|
T Consensus 454 t~~Lt~~~k~~~~~~~~~Ma~---~GLRv~----A~A~~-~~~~L~F~GL~G~~D---PPRp~V~~Av~~L~~gGV~v~- 521 (856)
T TIGR01522 454 TEELTEEQKEKIQEEAAEMAS---EGLRVI----AFASG-TEKDLVFLGLVGIND---PPRPDVKEAVERLLTGGVRVI- 521 (856)
T ss_pred HHHHHHHHHHHHHHHHHHHHC---CCCEEE----EEEEC-CCCCCEEEEEECCCC---CCCCCCHHHHHHHHHCCCEEE-
T ss_conf 157789999999898763200---666466----56522-568715761002659---224862689999842891899-
Q ss_pred EECCCCHHHHHHHHHHHCCCEE
Q ss_conf 8278997999999998299344
Q gi|254780537|r 239 SESTNSDQPAKQVAYETNASYG 260 (294)
Q Consensus 239 ~e~~~~~~~~~~ia~e~~~~~~ 260 (294)
.-++.|...|-.||+.+|.++.
T Consensus 522 MITGDS~~TAv~IA~~lG~~~~ 543 (856)
T TIGR01522 522 MITGDSEETAVSIARRLGMPVK 543 (856)
T ss_pred EECCCCHHHHHHHHHHCCCCCC
T ss_conf 9818728999999877286579
No 210
>PRK13280 N-glycosylase/DNA lyase; Provisional
Probab=30.78 E-value=39 Score=14.51 Aligned_cols=108 Identities=12% Similarity=-0.008 Sum_probs=61.1
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHH--HHHHHHHH--HCC
Q ss_conf 99899863014553378998863078447369982665214577529728872268864000789--99999976--201
Q gi|254780537|r 156 ELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPS--MMRHAINQ--MRS 231 (294)
Q Consensus 156 ~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~--~l~~~~~~--ik~ 231 (294)
..+.+.| ..+..+-..+...+.+ +...+++|-.---|+|.++..+-+..+. |..=|=|- +++.+... +-+
T Consensus 121 ~~~l~~y-~~m~~l~~~La~~l~~-~~~~KTiVFAvKM~gYa~r~~~~~~~p~----p~eIpIPvD~Ri~~~T~~sglv~ 194 (265)
T PRK13280 121 LNPLKYY-EDLEELLEDLAKILGA-KKESKTVVFAVKMFGYAYRAVFGEFRPY----PMEIPIPVDYRIAKLTLKSGLVE 194 (265)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHCC-CCCCCEEEEHHHHHHHHHHHHCCCCCCC----CCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 3334676-2399999999999689-9875635336998999999946777789----86799963099999999741034
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 69718998278997999999998299344432012378777
Q gi|254780537|r 232 HKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPD 272 (294)
Q Consensus 232 ~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~ 272 (294)
......-.-.....+....+|+++|+| .+.+|++-..-
T Consensus 195 ~~~~~~~~~~e~~~~~W~~Va~~sgIP---pLhiDsilW~~ 232 (265)
T PRK13280 195 GPPEEAMRTNEEPQEFWNKVARESGIP---PLHIDSILWLV 232 (265)
T ss_pred CCHHHHHCCCCHHHHHHHHHHHHCCCC---CCCCCHHHHHC
T ss_conf 755554035324899999998862999---62010145322
No 211
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=30.74 E-value=39 Score=14.51 Aligned_cols=30 Identities=13% Similarity=0.018 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 431888999999899863014553378998
Q gi|254780537|r 146 ALDPSNAKKYELNAREYSEKIRNSILPLKT 175 (294)
Q Consensus 146 ~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~ 175 (294)
.+.|.++-......+++.-+++.-.+....
T Consensus 275 ~lsP~da~L~lRGL~TL~lRm~r~~~nA~~ 304 (426)
T PRK05994 275 AISPFNAFLILTGIETLPLRMQRHSDNALA 304 (426)
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 568167899972578389999999999999
No 212
>KOG0256 consensus
Probab=30.58 E-value=39 Score=14.49 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=22.7
Q ss_pred HHCCCEEEEECCCCCC----CCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 7529728872268864----00078999999976201697189
Q gi|254780537|r 199 EDFGFKSLYLWPINSD----SERSPSMMRHAINQMRSHKIKFI 237 (294)
Q Consensus 199 ~~yGl~~~~~~~~~~~----~eps~~~l~~~~~~ik~~~v~~i 237 (294)
+..|+++-|+.-.+|. .-.++.+|..+.+++++++|++|
T Consensus 221 ~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI 263 (471)
T KOG0256 221 RKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVI 263 (471)
T ss_pred HHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEE
T ss_conf 9818952489982799977774699999999998864562798
No 213
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=30.02 E-value=40 Score=14.43 Aligned_cols=147 Identities=13% Similarity=0.107 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH----HHHHHCCC
Q ss_conf 21356789999999998643188899999989986301455337899886307844736998266521----45775297
Q gi|254780537|r 128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV----YLAEDFGF 203 (294)
Q Consensus 128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~----Y~~~~yGl 203 (294)
+-..+.......+++...+--|+.-.. ++ .++.+...+.+..+. .+|..+...+.+. -|+.+.|+
T Consensus 256 ~G~~~Td~fl~~l~~~~G~~vpe~~~~--er-----~rl~da~~d~h~~l~----gkrvai~gd~d~~~~l~~fL~ElG~ 324 (417)
T cd01966 256 TGLEAVDALIATLAKLSGRPVPEKIRR--QR-----AQLQDAMLDGHFYLG----GKRVAIALEPDLLAALSSFLAEMGA 324 (417)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHH--HH-----HHHHHHHHHHHHHHC----CCEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 155878999999999828998499999--99-----999999999999856----9779998771699999999997899
Q ss_pred EEEEECCCCCC--------CCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE--EECCCCCCCCC
Q ss_conf 28872268864--------000789999999762016971899827899799999999829934443--20123787778
Q gi|254780537|r 204 KSLYLWPINSD--------SERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV--LYVDSLSKPDG 273 (294)
Q Consensus 204 ~~~~~~~~~~~--------~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~--~~~d~l~~~~~ 273 (294)
+...+...+.. .+.-..|+.++.+..+ ++..|+.. .-.+.+|++.+++...+ ...|-++.-..
T Consensus 325 ~~~~~~~~~~~~~~~~~~~~~v~~gDl~~le~~~~--~~dliig~-----s~~~~~A~~~~ipllr~gfPi~Dr~g~~~~ 397 (417)
T cd01966 325 EIVAAVATTDSPALEKLPAEEVVVGDLEDLEDLAA--EADLLVTN-----SHGRQAAERLGIPLLRAGFPIFDRLGAAHK 397 (417)
T ss_pred EEEEEEECCCCHHHHHCCCCEEEECCHHHHHHHCC--CCCEEEEC-----CCHHHHHHHCCCCEEEECCCHHHCCCCCCC
T ss_conf 88899978998577737657265078899984178--99999958-----736899998499989926970420575466
Q ss_pred CCCCHHHHHHHHHHHHHHHC
Q ss_conf 86899999999999998620
Q gi|254780537|r 274 PAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 274 ~~~~Y~~~m~~N~~~l~~aL 293 (294)
.--.|-++ .+-++.|.++|
T Consensus 398 ~~~GY~G~-~~Ll~~I~N~~ 416 (417)
T cd01966 398 CTIGYRGT-RDLLFEIANLF 416 (417)
T ss_pred CEECHHHH-HHHHHHHHHHH
T ss_conf 31456779-99999998863
No 214
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=30.02 E-value=40 Score=14.43 Aligned_cols=52 Identities=17% Similarity=0.216 Sum_probs=37.5
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECCC---CHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf 00078999999976201697189982789---97999999998299344432012378
Q gi|254780537|r 215 SERSPSMMRHAINQMRSHKIKFIFSESTN---SDQPAKQVAYETNASYGGVLYVDSLS 269 (294)
Q Consensus 215 ~eps~~~l~~~~~~ik~~~v~~if~e~~~---~~~~~~~ia~e~~~~~~~~~~~d~l~ 269 (294)
.++......++.+.+++.+++.++..... ....++.||+..|.... ++|.+.
T Consensus 114 ~~~~~~~~~~~a~~~~~~gi~~~vId~~~~~~~~~~~~~LA~~~~g~Y~---~id~l~ 168 (178)
T cd01451 114 PDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYV---RLPDLS 168 (178)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEE---ECCCCC
T ss_conf 9951269999999998669978999799997674899999994299699---899799
No 215
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=29.97 E-value=27 Score=15.62 Aligned_cols=73 Identities=16% Similarity=0.089 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEE
Q ss_conf 92699999999986046433588289997528999999851891489996268898012022712457760378999
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLIL 77 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv 77 (294)
|+|+++...+..+.+++++... --....|++.- ++++|=.+--..+.|-...|.--+|+.++.----+||+-.
T Consensus 3 ~~k~l~~~~~~a~v~s~~a~~~---a~~~E~Pigep-~evg~meiaaVYlQpveMeP~G~~~~a~~aDiHlEADIha 75 (179)
T COG3470 3 MKKLLLSAAILASVFSAPAEGA---AAFKEVPIGEP-IEVGGMEIAAVYLQPVEMEPRGMQLPAAEADIHLEADIHA 75 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCCCC-CCCCCEEEEEEEEEEEECCCCCCCCCHHHCCCEEEEEHHC
T ss_conf 6899999999999974100002---34463468997-3218748999996203034465798702136335331010
No 216
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=29.35 E-value=41 Score=14.35 Aligned_cols=35 Identities=6% Similarity=0.162 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 07899999997620169718998278997999999
Q gi|254780537|r 217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV 251 (294)
Q Consensus 217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i 251 (294)
+...+..++.+.+++.++..+|......+..+..|
T Consensus 92 i~~~d~~~~~~~l~~~Gv~~vF~pGt~~~e~i~~~ 126 (128)
T cd02072 92 VGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADL 126 (128)
T ss_pred CCCCCHHHHHHHHHHCCCCEEECCCCCHHHHHHHH
T ss_conf 78310489999999669685749987999999998
No 217
>PRK10449 heat-inducible protein; Provisional
Probab=29.29 E-value=40 Score=14.44 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 926999999999860464335882
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKK 24 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~ 24 (294)
|||++.++++.+++.+|+ ++++.
T Consensus 1 MKk~l~l~~~~llLagC~-s~~~~ 23 (140)
T PRK10449 1 MKKVVALVALSLLMAGCV-SSGKI 23 (140)
T ss_pred CCHHHHHHHHHHHHHHCC-CCCCC
T ss_conf 903499999999997523-89988
No 218
>TIGR01826 CofD_related conserved hypothetical protein; InterPro: IPR010119 This entry represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (IPR010115 from INTERPRO), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis..
Probab=29.27 E-value=36 Score=14.73 Aligned_cols=60 Identities=17% Similarity=0.244 Sum_probs=27.5
Q ss_pred HHHH-HHHHHHHCCCCCEEE----EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCH
Q ss_conf 8999-999976201697189----98278997999999998299344432012378777886899
Q gi|254780537|r 219 PSMM-RHAINQMRSHKIKFI----FSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTY 278 (294)
Q Consensus 219 ~~~l-~~~~~~ik~~~v~~i----f~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y 278 (294)
++-+ .++++.|++.+.-+| |+-+-.++=.+..|+++....-....|+.+|.+..++++.|
T Consensus 177 ~~a~a~eAv~aI~eADlIilGPGSLyTSI~PnLLvp~i~~A~~~s~A~kvYV~NlmtqpGET~~~ 241 (331)
T TIGR01826 177 VKALAREAVEAIREADLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCNLMTQPGETDGF 241 (331)
T ss_pred CCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 48751589999966692787772457774243216789999972899899973356688866477
No 219
>PRK05445 hypothetical protein; Validated
Probab=29.22 E-value=41 Score=14.34 Aligned_cols=48 Identities=21% Similarity=0.285 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC
Q ss_conf 999999999864318889999998998630145533789988630784
Q gi|254780537|r 135 IYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDP 182 (294)
Q Consensus 135 ~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~ 182 (294)
.+..+--+-|+.++|+|++.|+...+.+..-..-...++...+..+|.
T Consensus 9 LiL~NQy~il~~L~pen~~~Y~r~~~ile~Gy~l~~~el~~~f~~lse 56 (166)
T PRK05445 9 LILSNQYKMMTMLDPENAERYRRLQTIIERGYGLQMRELDREFGELSE 56 (166)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCH
T ss_conf 999989999986193016789999999981036799999999733888
No 220
>PHA00019 phage assembly protein
Probab=29.05 E-value=41 Score=14.32 Aligned_cols=42 Identities=14% Similarity=0.113 Sum_probs=30.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHCC
Q ss_conf 926999999999860464335882899975289999998518
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAK 42 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~g 42 (294)
|+|.+.+++++|++.....+..++.+---.-++-++.+.++.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~s~~~isl~f~d~dIr~vl~~la~ 42 (428)
T PHA00019 1 MIKSIFAKMLLFLLMFLSFSSFALPVELNNSPIREFVSWYSQ 42 (428)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHH
T ss_conf 927489999999987740567447788508779999999998
No 221
>PRK08507 prephenate dehydrogenase; Validated
Probab=28.93 E-value=41 Score=14.31 Aligned_cols=66 Identities=14% Similarity=0.063 Sum_probs=42.9
Q ss_pred EEEEECCC-----CHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf 69982665-----2145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r 186 WFVTSEGC-----LVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV 251 (294)
Q Consensus 186 ~~v~~H~a-----f~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i 251 (294)
.||..||= +|+-.-.-+|=.-...-+.|.....+..+..+.++.+.-|-+++...+....+.+..+
T Consensus 108 ~fVg~HPmAGsE~sG~~~a~~~LF~~~~~il~p~~~~~~~~~~~~~~l~~~lGa~~~~~~~~~HD~~~A~~ 178 (275)
T PRK08507 108 NFIAAHPMTGTEFSGPKAAFKGLYKGAVVVLCDLEKSGEKHQERAKEIFSGIGMKIVFMDSKEHDHHAAYI 178 (275)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHH
T ss_conf 84434997888754454410778539859996888897999999999999819978874823368999999
No 222
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.71 E-value=42 Score=14.28 Aligned_cols=64 Identities=19% Similarity=0.298 Sum_probs=34.7
Q ss_pred CCCCEEEEECH--------HHHHHHHHHCCCEEEEEEEECCCC----CCCC-----CCCCHHHHHHHCCCCEEEEECCCC
Q ss_conf 58828999752--------899999985189148999626889----8012-----022712457760378999988761
Q gi|254780537|r 21 TQKKVVLSSFS--------IIGDITQNIAKDLVTVTTLVEAGN----DSHS-----YQVTSADAIKIQNADLILCNGLHL 83 (294)
Q Consensus 21 ~~~~~Vv~s~~--------pl~~iv~~I~gd~v~V~~li~~g~----dpH~-----ye~tp~d~~~i~~Adliv~~G~~~ 83 (294)
+++|.|++--. -+..+++..+-.- +++....|. +|+. ..-++.-...+++||+++..|..|
T Consensus 206 A~rPvii~G~g~~~~~a~~~l~~lae~lg~PV--~tt~~gkg~~p~~hp~~~G~~G~~~~~~a~~~l~~aDlvl~lG~rl 283 (574)
T PRK06882 206 AKKPVLFIGGGVITAECSEQLTQFAQRLNLPV--TSSLMGLGAYPSTDKQFLGMLGMHGTYEANNAMHESDLILGIGVRF 283 (574)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHHCCCCE--EEHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCC
T ss_conf 79988997874344248999999998609871--3120357777777765678777778889997433677399816865
Q ss_pred CHH
Q ss_conf 068
Q gi|254780537|r 84 EET 86 (294)
Q Consensus 84 E~~ 86 (294)
..+
T Consensus 284 ~~~ 286 (574)
T PRK06882 284 DDR 286 (574)
T ss_pred CCC
T ss_conf 654
No 223
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=28.63 E-value=42 Score=14.27 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 643188899999989986301455337899
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLK 174 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~ 174 (294)
.-+.|..+-......+++.-+++.-.+...
T Consensus 242 ~~lsP~~a~L~~RGL~TL~lRm~r~~~nA~ 271 (398)
T PRK08249 242 ATLDPFAAYLILRGMKTLALRVRQQQENAM 271 (398)
T ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 878917789986468979999999988999
No 224
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=28.45 E-value=42 Score=14.25 Aligned_cols=103 Identities=14% Similarity=0.112 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH---HHHCCCCCCCEEEE-----ECCCCH----HHHHHCCCE
Q ss_conf 999999986431888999999899863014553378998---86307844736998-----266521----457752972
Q gi|254780537|r 137 IENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKT---RIEKVDPEKRWFVT-----SEGCLV----YLAEDFGFK 204 (294)
Q Consensus 137 a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~---~~~~~p~~~~~~v~-----~H~af~----Y~~~~yGl~ 204 (294)
++-.+|-=..+-|-|+=.+.+-.+++--+++.-.+...+ -+..-| +...|. +|+.+. |+-+.||-
T Consensus 265 ~~~lRDlGa~lsPfnAfl~lqGlETL~LRmerH~~NA~~vA~~L~~Hp--kV~~V~YpgL~~~~~h~la~kyl~~g~ga- 341 (426)
T COG2873 265 VQLLRDLGATLSPFNAFLLLQGLETLSLRMERHCENALKVAEFLENHP--KVAWVNYPGLASHPYHALAKKYLPKGAGA- 341 (426)
T ss_pred HHHHHHCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCC--CEEEEECCCCCCCCCHHHHHHHCCCCCCE-
T ss_conf 988875165569378899983433667789998776999999986099--71034279988894357798636478643-
Q ss_pred EEEECCCCCCCCCCHHHHHH---HHHHHCCCCCEEEEEECCC
Q ss_conf 88722688640007899999---9976201697189982789
Q gi|254780537|r 205 SLYLWPINSDSERSPSMMRH---AINQMRSHKIKFIFSESTN 243 (294)
Q Consensus 205 ~~~~~~~~~~~eps~~~l~~---~~~~ik~~~v~~if~e~~~ 243 (294)
+-..++..+.|...+=+.. +.....=.+.+.+..-|-.
T Consensus 342 -vltF~~kgg~ea~~~fi~~l~L~s~laNvGD~rsLvIHPAs 382 (426)
T COG2873 342 -VLTFGVKGGYEAGKKFIDALKLFSHLANIGDARSLVIHPAS 382 (426)
T ss_pred -EEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCC
T ss_conf -89987067189999999999999860354656427766774
No 225
>PRK06934 flavodoxin; Provisional
Probab=28.27 E-value=43 Score=14.23 Aligned_cols=28 Identities=11% Similarity=0.095 Sum_probs=16.7
Q ss_pred HHHHHCCCCEEEEECC--CCCHHHHHHHHH
Q ss_conf 4577603789999887--610689999974
Q gi|254780537|r 66 DAIKIQNADLILCNGL--HLEETYMKYFTN 93 (294)
Q Consensus 66 d~~~i~~Adliv~~G~--~~E~~~~~~~~~ 93 (294)
.+..++.|.+++.+|. |-...+.+.+++
T Consensus 53 ~vd~~s~as~~~~~~~~~GnT~~vAe~Iq~ 82 (221)
T PRK06934 53 GVDGVSGASILQKNGEVLGSTQYVAQIIQE 82 (221)
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 555557643787258668769999999999
No 226
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=28.23 E-value=43 Score=14.23 Aligned_cols=129 Identities=16% Similarity=0.236 Sum_probs=54.7
Q ss_pred CCCCEEEEECHH--------HHHHHHHHCCCEEEEEEEECCCCCCCCCC---------CCHHHHHHHCCCCEEEEECCCC
Q ss_conf 588289997528--------99999985189148999626889801202---------2712457760378999988761
Q gi|254780537|r 21 TQKKVVLSSFSI--------IGDITQNIAKDLVTVTTLVEAGNDSHSYQ---------VTSADAIKIQNADLILCNGLHL 83 (294)
Q Consensus 21 ~~~~~Vv~s~~p--------l~~iv~~I~gd~v~V~~li~~g~dpH~ye---------~tp~d~~~i~~Adliv~~G~~~ 83 (294)
+++|.|++--.. +..|++..+-.- ++++...|.=|++.. -++.--..+++||+++..|..|
T Consensus 204 akrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv--~tt~~gkg~~~~~hpl~~G~~G~~g~~~a~~~~~~aDlvl~lG~rl 281 (560)
T PRK08527 204 AKKPLFYLGGGAISSNASELIRELVKKTGIPA--VETLMALGTLRSDDPLNLGMAGMHGSYAANMALSECDLLISLGARF 281 (560)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHHHCCCE--EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCC
T ss_conf 68986991776014469999999999859985--6444567777778842258777767699999983488699815767
Q ss_pred CHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 06899999742355752111237420222100123346301112213567899999999986431888999999899
Q gi|254780537|r 84 EETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAR 160 (294)
Q Consensus 84 E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~ 160 (294)
..+.........++.+++.+. +++..... ....|-.+.-| +...++.+.+.+.+.+|...+.+.+..+
T Consensus 282 ~~~~t~~~~~~~~~~~ii~id--~d~~~i~~----~~~~~~~i~~D---~~~~l~~L~~~l~~~~~~~~~~w~~~~~ 349 (560)
T PRK08527 282 DDRVTGKLSEFAKHAKIIHVD--IDPSSISK----IINADYPIVGD---LKEVLKELLEELKKINPTTFKEWREILK 349 (560)
T ss_pred CCCCCCCCCCCCCCCEEEEEC--CCHHHHCC----CCCCCCEEECC---HHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_conf 755568766346876046752--89899667----24788305348---9999999999753058533699999999
No 227
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=28.21 E-value=43 Score=14.22 Aligned_cols=20 Identities=20% Similarity=0.190 Sum_probs=10.6
Q ss_pred HHHHHHHHCCCEEEEEEEEC
Q ss_conf 99999985189148999626
Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLVE 52 (294)
Q Consensus 33 l~~iv~~I~gd~v~V~~li~ 52 (294)
+-++++.++.-..+|+.+..
T Consensus 13 ~r~LA~~La~rGHeV~Vit~ 32 (396)
T cd03818 13 FRHLAPALAAQGHEVVFLTE 32 (396)
T ss_pred HHHHHHHHHHCCCEEEEEEC
T ss_conf 99999999978998999968
No 228
>cd02767 MopB_ydeP The MopB_ydeP CD includes a group of related uncharacterized bacterial molybdopterin-binding oxidoreductase-like domains with a putative molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=28.07 E-value=43 Score=14.21 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=54.2
Q ss_pred HHHHHCCCCEEEEECCCCC---HHHHHHHHHC-CCCCCCCCCCCCCCH--HHH--HHC-----CCCCCCCCHHHHHHHHH
Q ss_conf 4577603789999887610---6899999742-355752111237420--222--100-----12334630111221356
Q gi|254780537|r 66 DAIKIQNADLILCNGLHLE---ETYMKYFTNL-KKGTKIITVTDGINP--IGV--SED-----TSVDSEPNPHAWMSLTN 132 (294)
Q Consensus 66 d~~~i~~Adliv~~G~~~E---~~~~~~~~~~-~~~~~~i~~~~~i~~--~~~--~~~-----~~~~~~~dpH~Wldp~~ 132 (294)
....+.+||+||..|.+-- |-+...+..+ +++.++|.+...-+. ... ... .....-.|-|+=.-|-.
T Consensus 157 ~~~D~~~ad~i~~~G~Np~~~hP~~~~~l~~ak~~GakiIvidP~re~gl~rf~~p~~~~~~lt~~t~~Ad~~l~irpGt 236 (574)
T cd02767 157 SLEDFEHTDLIFFIGQNPGTNHPRMLHYLREAKKRGGKIIVINPLREPGLERFANPQNPESMLTGGTKIADEYFQVRIGG 236 (574)
T ss_pred CHHHHHHCCEEEEECCCHHHHCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHCCCCCCCHHCCCCCCHHHCEEECCCCCC
T ss_conf 98899758889997778678688999999999988896999889750566641575542000344305440440568895
Q ss_pred HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 789999999998643--------1888999999899863014553378
Q gi|254780537|r 133 AMIYIENIRKALTAL--------DPSNAKKYELNAREYSEKIRNSILP 172 (294)
Q Consensus 133 ~~~~a~~I~~~L~~~--------dP~~~~~y~~N~~~~~~~l~~l~~~ 172 (294)
-...+..|...|++. |.+--+.|...++.|.+.+.+..-+
T Consensus 237 D~Al~~gi~~~lie~d~~~~~~~D~~FI~~~t~Gfee~~~~v~~~~~e 284 (574)
T cd02767 237 DIALLNGMAKHLIERDDEPGNVLDHDFIAEHTSGFEEYVAALRALSWD 284 (574)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHCCHH
T ss_conf 899999999999973654578668899987446799999998749999
No 229
>pfam00838 TCTP Translationally controlled tumour protein.
Probab=28.03 E-value=43 Score=14.20 Aligned_cols=38 Identities=13% Similarity=0.274 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 35678999999999864318889999998998630145
Q gi|254780537|r 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIR 167 (294)
Q Consensus 130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~ 167 (294)
-...+.+...|.+.|.+..|+.-+.|.+|+..+.+++.
T Consensus 86 ~~yiK~YmK~v~~~L~e~~pe~V~~Fk~~a~~~vK~il 123 (166)
T pfam00838 86 KTYIKGYMKAVKAKLQEENPERVSLFKKNIQGWVKSLL 123 (166)
T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998765196789999998899999876
No 230
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed
Probab=27.97 E-value=43 Score=14.20 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=16.9
Q ss_pred CHHHHHHHHHH---HHHCCCCCCCCCCEEEEE--CHHHH
Q ss_conf 92699999999---986046433588289997--52899
Q gi|254780537|r 1 MLRYFICLLFS---YIPMSASATTQKKVVLSS--FSIIG 34 (294)
Q Consensus 1 M~r~~~~l~~~---~~~~~~~~~~~~~~Vv~s--~~pl~ 34 (294)
|||.+.++++. +.++++++..++++|.++ .+|+.
T Consensus 1 mk~~~~~~~~~~~~~~~~~~~a~~~~l~Vg~~~~~pPf~ 39 (247)
T PRK09495 1 MKSVLKVSLAALTLAFAVSSHAADKELVVATDTAFVPFE 39 (247)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCEE
T ss_conf 977999999999999987665149949999899879805
No 231
>pfam06437 ISN1 IMP-specific 5'-nucleotidase. The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.
Probab=27.73 E-value=21 Score=16.36 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH-----CCCEEEEECC-CCCC-CCCCHHHHH
Q ss_conf 89999998998630145533789988630784473699826652145775-----2972887226-8864-000789999
Q gi|254780537|r 151 NAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAED-----FGFKSLYLWP-INSD-SERSPSMMR 223 (294)
Q Consensus 151 ~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~-----yGl~~~~~~~-~~~~-~eps~~~l~ 223 (294)
-|+-|. ++.+|.++|..|...+.....--+..++.|++.-.--.|+.+. +||+.+.-.. ..++ ...+-.++.
T Consensus 186 TAAGY~-~a~kY~~RL~GLLda~~~~~~L~~~qk~~l~VMGGEsNYLfr~~~~~~~~L~~Vp~~eW~~~~m~~W~~~di~ 264 (404)
T pfam06437 186 TAAGYT-EADKYYERLHGLLDAINSSDDLTDEQKENLIVMGGESNYLFRYDEDSPHGLKPVPREEWLLPEMKTWNQEDIE 264 (404)
T ss_pred ECCCCC-CHHHHHHHHHHHHHHHHHCCCCCHHHHCCEEEECCCCEEEEEECCCCCCCCEECCHHHCCCCCCCCCCHHHHH
T ss_conf 678999-7277999999999998605689979967469961562155676677777746667886558130276988999
Q ss_pred HHHHHH
Q ss_conf 999762
Q gi|254780537|r 224 HAINQM 229 (294)
Q Consensus 224 ~~~~~i 229 (294)
++.+..
T Consensus 265 ~lLD~A 270 (404)
T pfam06437 265 AILDIA 270 (404)
T ss_pred HHHHHH
T ss_conf 999999
No 232
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=27.70 E-value=44 Score=14.16 Aligned_cols=94 Identities=17% Similarity=0.222 Sum_probs=55.8
Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC---------CCCEEEEEEC
Q ss_conf 7899886307844736998266521457752972887226886400078999999976201---------6971899827
Q gi|254780537|r 171 LPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS---------HKIKFIFSES 241 (294)
Q Consensus 171 ~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~---------~~v~~if~e~ 241 (294)
++....+..+..+.+.+|.|.|.|. +..+..+|+.+..++...|++ .++++ .+-.
T Consensus 146 ~Ql~~~l~~l~~~~~~vIAYEPvWA---------------IGTG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~I-lYGG 209 (251)
T COG0149 146 RQLAAALAALSPEANIVIAYEPVWA---------------IGTGKSASPADAEEVHAFIRAVLAELFGAEEKVRI-LYGG 209 (251)
T ss_pred HHHHHHHHHCCCCCCEEEEECCHHH---------------HCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEE-EEEC
T ss_conf 9999998744854373999878888---------------45898889888999999999999974487787579-9717
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 899799999999829934443201237877788689999999999
Q gi|254780537|r 242 TNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSL 286 (294)
Q Consensus 242 ~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~ 286 (294)
..++.-+..+..+.++.-. ++-.-+| ..++|..+++...
T Consensus 210 SV~~~N~~e~~~~~~idG~-LVGgAsl-----ka~~f~~ii~~~~ 248 (251)
T COG0149 210 SVKPGNAAELAAQPDIDGA-LVGGASL-----KADDFLAILEALA 248 (251)
T ss_pred CCCHHHHHHHHCCCCCCEE-EECCEEE-----CCHHHHHHHHHHH
T ss_conf 7685579999658999868-9721330-----5255999999986
No 233
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=27.59 E-value=44 Score=14.15 Aligned_cols=50 Identities=4% Similarity=-0.108 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 64318889999998998630145533789988630784473699826652
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL 194 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af 194 (294)
....|..+-......+++.-+++.-.+.......-+....+.--+.||++
T Consensus 231 ~~~~p~~a~l~~rGL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL 280 (386)
T PRK08045 231 VTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSL 280 (386)
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCC
T ss_conf 77898899999836887788999999999999999863998537989999
No 234
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit; InterPro: IPR006274 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates , . CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate . The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain . CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites . The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein . The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP . There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia . CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains . This entry represents the small subunit of the glutamine-dependent form (6.3.5.5 from EC) of carbamoyl phosphate synthase, CPSase II. The small subunit catalyses the hydrolysis of glutamine to ammonia, which in turn used by the large chain to synthesize carbamoyl phosphate. The C-terminal domain of the small subunit of CPSase has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (6.3.4.16 from EC). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species. ; GO: 0004086 carbamoyl-phosphate synthase activity, 0006807 nitrogen compound metabolic process.
Probab=27.57 E-value=44 Score=14.15 Aligned_cols=49 Identities=12% Similarity=0.137 Sum_probs=28.6
Q ss_pred EEEEEEEECCC--CCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 14899962688--980120227124577603789999887610689999974
Q gi|254780537|r 44 LVTVTTLVEAG--NDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTN 93 (294)
Q Consensus 44 ~v~V~~li~~g--~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~ 93 (294)
++.|..+|=.. ..+.+|+.+-|=-.=|++-+++=.-|.+ .-.+.+.+.+
T Consensus 80 ~i~v~G~vv~e~~~~~Snwra~~SL~~~L~~~~ipgI~GvD-TRaLv~~iR~ 130 (383)
T TIGR01368 80 KIHVKGLVVRELSDRYSNWRATESLDQFLKEHGIPGIYGVD-TRALVKKIRE 130 (383)
T ss_pred EEEEEEEEEECCCCCCCHHHHHCCHHHHHHHCCCEEEECCC-HHHHHHHHHH
T ss_conf 34899998541236787155650489999856984730457-7999999863
No 235
>pfam03652 UPF0081 Uncharacterized protein family (UPF0081).
Probab=27.54 E-value=44 Score=14.15 Aligned_cols=46 Identities=9% Similarity=0.152 Sum_probs=33.9
Q ss_pred CCCCCCHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 64000789999999762016-97189982789979999999982993
Q gi|254780537|r 213 SDSERSPSMMRHAINQMRSH-KIKFIFSESTNSDQPAKQVAYETNAS 258 (294)
Q Consensus 213 ~~~eps~~~l~~~~~~ik~~-~v~~if~e~~~~~~~~~~ia~e~~~~ 258 (294)
....+..+.+..+.+.+++. ++++.|.++-.+++.++..-++.|.+
T Consensus 65 G~~~~~~~~v~~f~~~L~~~~~i~v~~~DEr~TS~~A~~~l~~~~~~ 111 (134)
T pfam03652 65 GSEGEQTKRVRKFARRLKKRFGLPVELVDERLTTVEAERILREAGLS 111 (134)
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 88088999999999999986199868863432799999999973744
No 236
>PRK06767 methionine gamma-lyase; Provisional
Probab=27.53 E-value=44 Score=14.14 Aligned_cols=57 Identities=4% Similarity=-0.144 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHC
Q ss_conf 643188899999989986301455337899886307844736998266521457752
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDF 201 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~y 201 (294)
..+.|..+-......+++.-+++.-.+.......-+....+.--++||.+....+.+
T Consensus 240 ~~~sp~~a~l~~rGl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yP~~~la~k~~ 296 (386)
T PRK06767 240 GIMAPFDAWLLLRGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQM 296 (386)
T ss_pred CCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHHHHHHH
T ss_conf 878934778986267878999999999999999999639983758796888998872
No 237
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=27.50 E-value=44 Score=14.14 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=43.9
Q ss_pred EEECCCCHHHH---------HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 98266521457---------752972887226886400078999999976201697189982789979999999982993
Q gi|254780537|r 188 VTSEGCLVYLA---------EDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNAS 258 (294)
Q Consensus 188 v~~H~af~Y~~---------~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~ 258 (294)
+|+|-||+... -++|++-+-..|-.+..+-....|+++.+. .++ +.|..-...++.-++.+. ++|++
T Consensus 118 vTFHRAfD~~~dp~~ale~Li~lG~~rILTSG~~~~A~~G~~~L~~L~~~--a~~-~iIm~GgGV~~~Ni~~~~-~tG~~ 193 (248)
T PRK11572 118 VTFHRAFDMCANPLNALKNLAELGVARILTSGQQSDAEQGLSLIMELIAQ--GDA-PIIMAGAGVRAENLQKFL-DAGVR 193 (248)
T ss_pred EEEECHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH--CCC-CEEEECCCCCHHHHHHHH-HCCCC
T ss_conf 79862022149999999999975999898899978777889999999984--499-689878998999999999-75977
Q ss_pred EE
Q ss_conf 44
Q gi|254780537|r 259 YG 260 (294)
Q Consensus 259 ~~ 260 (294)
-.
T Consensus 194 ei 195 (248)
T PRK11572 194 EV 195 (248)
T ss_pred EE
T ss_conf 89
No 238
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha subunit, Gram-positive type; InterPro: IPR006308 These are the polypeptide chains of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence and poorly alignable. ; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0005737 cytoplasm.
Probab=27.31 E-value=43 Score=14.17 Aligned_cols=73 Identities=8% Similarity=0.150 Sum_probs=49.7
Q ss_pred CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCC-CCCCCCCCHHHHHHHCCCCEEE-EECCCCC-HHHHHHHHHC
Q ss_conf 8828999752899999985189148999626889-8012022712457760378999-9887610-6899999742
Q gi|254780537|r 22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGN-DSHSYQVTSADAIKIQNADLIL-CNGLHLE-ETYMKYFTNL 94 (294)
Q Consensus 22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~-dpH~ye~tp~d~~~i~~Adliv-~~G~~~E-~~~~~~~~~~ 94 (294)
++..|+-.+.-+-..-++|-...+++|.|..--. +.-+-|--=..++.+=+..++| .||+.|| +|+...+.+.
T Consensus 233 nGk~ii~~~~~FikP~~~l~~~~~elT~ITq~ml~n~~~~~~vL~k~~~f~~d~ilVAHNGasFD~~Fl~~~~~k~ 308 (1264)
T TIGR01405 233 NGKRIIDKFQFFIKPKEPLSAFVTELTGITQDMLENAPEIEEVLEKFKEFLKDSILVAHNGASFDIGFLNTNFEKV 308 (1264)
T ss_pred CCCEEEEEHHHHCCCCCCCCCCEEEECCCCHHHHCCCCCHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHC
T ss_conf 6857623123232887546754266246647973798417899999999769758886276103668898898762
No 239
>pfam07225 NDUF_B4 NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4). This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3).
Probab=27.23 E-value=30 Score=15.27 Aligned_cols=21 Identities=10% Similarity=0.123 Sum_probs=16.5
Q ss_pred ECCCCCCCCCCCCHHHHHHHC
Q ss_conf 268898012022712457760
Q gi|254780537|r 51 VEAGNDSHSYQVTSADAIKIQ 71 (294)
Q Consensus 51 i~~g~dpH~ye~tp~d~~~i~ 71 (294)
.|...|||+|..||.+.++..
T Consensus 10 ~p~~Ldp~eYdvSpE~rra~~ 30 (125)
T pfam07225 10 LPETLDPAEYNLSPETRRAEA 30 (125)
T ss_pred CCCCCCHHHCCCCHHHHHHHH
T ss_conf 888789312179989999999
No 240
>PRK09934 putative fimbrial protein; Provisional
Probab=26.98 E-value=42 Score=14.25 Aligned_cols=18 Identities=28% Similarity=0.360 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHHCCCC
Q ss_conf 926999999999860464
Q gi|254780537|r 1 MLRYFICLLFSYIPMSAS 18 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~ 18 (294)
|||.|+.+++++++++.+
T Consensus 1 mkk~~l~~~~~l~~~~~~ 18 (171)
T PRK09934 1 MRRVFIAIFCGLLWSPLS 18 (171)
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 926899999999986344
No 241
>TIGR02747 TraV type IV conjugative transfer system protein TraV; InterPro: IPR014118 This entry includes TraV, which is a component of conjugative type IV secretion system. TraV is an outer membrane lipoprotein that is believed to interact with the secretin TraK , , . The alignment contains three conserved cysteines in the N-terminal half..
Probab=26.95 E-value=39 Score=14.49 Aligned_cols=18 Identities=22% Similarity=0.538 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHH--CCCC
Q ss_conf 92699999999986--0464
Q gi|254780537|r 1 MLRYFICLLFSYIP--MSAS 18 (294)
Q Consensus 1 M~r~~~~l~~~~~~--~~~~ 18 (294)
|||...++++.+++ +++|
T Consensus 1 Mmr~~~L~~~~~~~f~LtGC 20 (174)
T TIGR02747 1 MMRLKVLLLLACVAFLLTGC 20 (174)
T ss_pred CCHHHHHHHHHHHHHHHHHH
T ss_conf 90678999999998720025
No 242
>PRK12999 pyruvate carboxylase; Reviewed
Probab=26.90 E-value=31 Score=15.13 Aligned_cols=30 Identities=10% Similarity=0.154 Sum_probs=12.8
Q ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 29728872268864000789999999762016
Q gi|254780537|r 201 FGFKSLYLWPINSDSERSPSMMRHAINQMRSH 232 (294)
Q Consensus 201 yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~ 232 (294)
.|-..+++-.+. .-.+|....+++..+|+.
T Consensus 704 ~G~~~l~IKDMA--GLl~P~aa~~LV~aLk~~ 733 (1147)
T PRK12999 704 AGAHILAIKDMA--GLLKPAAAYKLVSALKEE 733 (1147)
T ss_pred CCCCEEEECCCC--CCCCHHHHHHHHHHHHHH
T ss_conf 689889971445--468879999999999861
No 243
>pfam08123 DOT1 Histone methylation protein DOT1. The DOT1 domain regulates gene expression by methylating histone H3. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast.
Probab=26.76 E-value=45 Score=14.05 Aligned_cols=23 Identities=9% Similarity=0.193 Sum_probs=8.4
Q ss_pred HHHHHHHHHCC--CCCCCCCCCCCC
Q ss_conf 68999997423--557521112374
Q gi|254780537|r 85 ETYMKYFTNLK--KGTKIITVTDGI 107 (294)
Q Consensus 85 ~~~~~~~~~~~--~~~~~i~~~~~i 107 (294)
+++.++++..+ ++..-++++.|+
T Consensus 29 ~fis~ii~~~~l~~~dvF~DLGSGV 53 (205)
T pfam08123 29 EFLSDVLDKCNLGPQDVFVDLGSGV 53 (205)
T ss_pred HHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 9999999983989768899858883
No 244
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=26.71 E-value=34 Score=14.88 Aligned_cols=19 Identities=16% Similarity=0.309 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 1122135678999999999
Q gi|254780537|r 125 HAWMSLTNAMIYIENIRKA 143 (294)
Q Consensus 125 H~Wldp~~~~~~a~~I~~~ 143 (294)
-+|+||+....++++|...
T Consensus 18 RVw~DP~~~~eI~~A~tR~ 36 (145)
T cd01418 18 RVWIDPERLEEVAEAITRD 36 (145)
T ss_pred CEEECCHHHHHHHHHHHHH
T ss_conf 0573806777999865199
No 245
>pfam07437 YfaZ YfaZ precursor. This family contains the precursor of the bacterial protein YfaZ (approximately 180 residues long). Many members of this family are hypothetical proteins.
Probab=26.57 E-value=38 Score=14.57 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=25.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCC
Q ss_conf 926999999999860464335882899975289999998518914899962688
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAG 54 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g 54 (294)
|||+++.+.+++++.+.++.+....+ +++.+.++...=++.+
T Consensus 1 mkk~~~~~a~~l~~~s~~A~A~s~~~------------~~g~~~t~~~~~~g~~ 42 (180)
T pfam07437 1 MAKFRVASVALLLLVALSVNASSFNL------------GLGNDYTNTGLGLGTN 42 (180)
T ss_pred CCHHHHHHHHHHHHHHHHCEEEEEEC------------CCCCCEEEEEECCCCC
T ss_conf 90358999999987632105788422------------4664137774303788
No 246
>PRK05968 hypothetical protein; Provisional
Probab=26.44 E-value=46 Score=14.02 Aligned_cols=30 Identities=13% Similarity=0.030 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 643188899999989986301455337899
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLK 174 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~ 174 (294)
.-+.|.++-......+++.-+++.-.+...
T Consensus 241 ~~lsP~~a~l~lRGL~TL~lRm~rh~~nA~ 270 (389)
T PRK05968 241 GKLSPFEAWLLLRGLRTLPLRMKAHEASAL 270 (389)
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 778858889998479869999999999999
No 247
>pfam10933 DUF2827 Protein of unknown function (DUF2827). This is a family of uncharacterized proteins found in Burkholderia.
Probab=26.38 E-value=46 Score=14.01 Aligned_cols=68 Identities=13% Similarity=0.232 Sum_probs=36.8
Q ss_pred CHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHH------H--CCC-CCCCCCHHHHHHHHHH
Q ss_conf 712457760378999988761068999997423557521112374202221------0--012-3346301112213567
Q gi|254780537|r 63 TSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVS------E--DTS-VDSEPNPHAWMSLTNA 133 (294)
Q Consensus 63 tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~------~--~~~-~~~~~dpH~Wldp~~~ 133 (294)
+++|+ ..+-|++|-.|+.+|+-+.+.+... +.+++...-|-+-...- . ++. ....+| -+|++|...
T Consensus 66 ~~~ea--~~~lDVlIEmg~~i~~~~~~~~r~~--G~KvV~~~~Gn~Yv~~iE~~iF~~~~~~~~~~~~~D-eIW~~Pq~~ 140 (364)
T pfam10933 66 SFAEV--KDALDVLIEMGAQIDVEWTAYLKAR--GGKIVSYCCGNDYVIAIERMMFGRPSGHLFIGTPYD-EVWTIPQFE 140 (364)
T ss_pred CHHHH--HHCCCEEEEECCCCCHHHHHHHHHC--CCEEEEEECCCHHHHHHHHHHCCCCCCCCCCCCCCC-EEEECCCHH
T ss_conf 59998--3378999991675487999999975--992899966856787634765079887656799865-178450045
Q ss_pred HH
Q ss_conf 89
Q gi|254780537|r 134 MI 135 (294)
Q Consensus 134 ~~ 135 (294)
..
T Consensus 141 ~~ 142 (364)
T pfam10933 141 RT 142 (364)
T ss_pred HH
T ss_conf 33
No 248
>pfam01497 Peripla_BP_2 Periplasmic binding protein. This family includes bacterial periplasmic binding proteins. Several of which are involved in iron transport.
Probab=26.38 E-value=46 Score=14.01 Aligned_cols=110 Identities=13% Similarity=0.118 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEE----------ECCCC-HH
Q ss_conf 21356789999999998643188899999989986301455337899886307844736998----------26652-14
Q gi|254780537|r 128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVT----------SEGCL-VY 196 (294)
Q Consensus 128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~----------~H~af-~Y 196 (294)
-++.........+++.+-+. +.++ ++.+.+++....++++....+.+.+.++. ...+| +.
T Consensus 93 ~~~~~~~~~i~~lg~~~g~~--~~a~-------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 163 (236)
T pfam01497 93 STGEGILEQIRALGELLGLE--DEAE-------ELVAELDSAIDAAKARIDSLKPKPVLVFGYADGGGYVVFGSGSYIGD 163 (236)
T ss_pred CCHHHHHHHHHHHHHHHCCC--HHHH-------HHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCHHH
T ss_conf 99899999999999996981--7899-------99999999999999874046898399999988996388358865689
Q ss_pred HHHHCCCEEEEECC-CCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 57752972887226-8864000789999999762016971899827899799999999
Q gi|254780537|r 197 LAEDFGFKSLYLWP-INSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAY 253 (294)
Q Consensus 197 ~~~~yGl~~~~~~~-~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~ 253 (294)
+.+..|++...-.. .....+.|+..+. +.+..+||.-....+...+.|.+
T Consensus 164 ~i~~~G~~n~~~~~~~~~~~~vs~E~i~-------~~nPD~I~~~~~~~~~~~~~l~~ 214 (236)
T pfam01497 164 LLDALGGENIAAETKGSESAPISFENIL-------AADPDVIIVSGRETKTGVDELKA 214 (236)
T ss_pred HHHHCCCCCCCCCCCCCCCCCCCHHHHH-------HHCCCEEEEECCCCHHHHHHHHH
T ss_conf 9998299655444577888878989999-------85999999978985578999883
No 249
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=26.33 E-value=46 Score=14.00 Aligned_cols=81 Identities=9% Similarity=0.097 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCC------CHHHHHHC-CCEEEEECCCCCCCCC
Q ss_conf 6431888999999899863014553378998863078447369982665------21457752-9728872268864000
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGC------LVYLAEDF-GFKSLYLWPINSDSER 217 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~a------f~Y~~~~y-Gl~~~~~~~~~~~~ep 217 (294)
.-++|..+=....+.+++.-+++...+...+...-+......--++||+ ...+.+.+ |..-+--..+..+
T Consensus 244 ~~l~p~dA~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~krq~~g~gg~~Sf~l~~~--- 320 (396)
T COG0626 244 AVLSPFDAWLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE--- 320 (396)
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHCCCCCEEEEEEECCH---
T ss_conf 87887999999817153999999999989999999862997689989999889768999974579860899996785---
Q ss_pred CHHHHHHHHHHHC
Q ss_conf 7899999997620
Q gi|254780537|r 218 SPSMMRHAINQMR 230 (294)
Q Consensus 218 s~~~l~~~~~~ik 230 (294)
.+..++.+.++
T Consensus 321 --~~~~~f~~~L~ 331 (396)
T COG0626 321 --EAAKKFLDSLK 331 (396)
T ss_pred --HHHHHHHHHCC
T ss_conf --89999997278
No 250
>PRK08655 prephenate dehydrogenase; Provisional
Probab=26.17 E-value=46 Score=13.99 Aligned_cols=37 Identities=11% Similarity=0.074 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHH---HHCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 0007899999997---6201697189982789979999999
Q gi|254780537|r 215 SERSPSMMRHAIN---QMRSHKIKFIFSESTNSDQPAKQVA 252 (294)
Q Consensus 215 ~eps~~~l~~~~~---~ik~~~v~~if~e~~~~~~~~~~ia 252 (294)
.-.|.+++.+... ..+..+|.++|-.. .++..+..+-
T Consensus 343 ~~~~~~el~~wk~~nl~~~~~disv~~~~~-~d~~ii~~~~ 382 (441)
T PRK08655 343 RLLSEKELREWKVENLEKYVRDISVLFPKG-ADPEVILELL 382 (441)
T ss_pred CCCCHHHHHHHHHCCCCCCEEEEEEEECCC-CCHHHHHHHH
T ss_conf 038988999988645763135689992699-9979999998
No 251
>PRK04043 tolB translocation protein TolB; Provisional
Probab=26.11 E-value=46 Score=13.98 Aligned_cols=76 Identities=14% Similarity=0.163 Sum_probs=36.3
Q ss_pred CHHHHHHHHHHHHHCCCC-------CCCCCCEEEEECHHH-------HHHHHHHCCCEEEEEE---EECCCCCCCCCCCC
Q ss_conf 926999999999860464-------335882899975289-------9999985189148999---62688980120227
Q gi|254780537|r 1 MLRYFICLLFSYIPMSAS-------ATTQKKVVLSSFSII-------GDITQNIAKDLVTVTT---LVEAGNDSHSYQVT 63 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~-------~~~~~~~Vv~s~~pl-------~~iv~~I~gd~v~V~~---li~~g~dpH~ye~t 63 (294)
|||+++++++++.++.+. .....+.|.+..+.. .+|.+-|..|- .... +++ ....-.+++.
T Consensus 1 MKki~l~ll~~~~~~aae~~IeIt~~~~~~~~IAVvp~~~~~~~~l~~~i~~II~~DL-~rSG~F~~i~-~~~~~~~~~~ 78 (419)
T PRK04043 1 MKKLVLFLLVSLGLFAVDATLDIVKKGQKLPKIVVEDSSDSNDANLKLKFFKILVNDL-KVSSHFDVSE-NKTQSNYAIN 78 (419)
T ss_pred CHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHH-HCCCCCCCCC-CCCCCCCCCC
T ss_conf 9557788999977745047999994787876589961686776413689999998753-4165851278-7666667768
Q ss_pred HHHHHHHCCCCEEEEE
Q ss_conf 1245776037899998
Q gi|254780537|r 64 SADAIKIQNADLILCN 79 (294)
Q Consensus 64 p~d~~~i~~Adliv~~ 79 (294)
..+-+.+ ++|.+|.-
T Consensus 79 ~~~w~~~-~~d~lv~g 93 (419)
T PRK04043 79 YNELKDK-KVNLVARY 93 (419)
T ss_pred HHHHHHH-CCCEEEEE
T ss_conf 5687750-99799999
No 252
>pfam00875 DNA_photolyase DNA photolyase. This domain binds a light harvesting cofactor.
Probab=26.02 E-value=47 Score=13.97 Aligned_cols=18 Identities=11% Similarity=-0.042 Sum_probs=7.9
Q ss_pred HHHHHHHHCCCCCEEEEE
Q ss_conf 999997620169718998
Q gi|254780537|r 222 MRHAINQMRSHKIKFIFS 239 (294)
Q Consensus 222 l~~~~~~ik~~~v~~if~ 239 (294)
-.++.+.++++||.+..+
T Consensus 106 d~~v~~~l~~~~i~~~~~ 123 (164)
T pfam00875 106 DAAVKEALREAGIEVHSF 123 (164)
T ss_pred HHHHHHHHHHCCCEEEEE
T ss_conf 999999998547469997
No 253
>PRK07671 cystathionine beta-lyase; Provisional
Probab=25.92 E-value=47 Score=13.95 Aligned_cols=55 Identities=7% Similarity=0.010 Sum_probs=28.7
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 99998-64318889999998998630145533789988630784473699826652
Q gi|254780537|r 140 IRKAL-TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL 194 (294)
Q Consensus 140 I~~~L-~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af 194 (294)
+...+ .-+.|.++-......+++.-+++.-.+.......-+....+.--++||.+
T Consensus 222 ~~~~~G~~lsP~~a~L~lRGL~TL~lRm~r~~~nA~~vA~~L~~hp~V~~V~yPgL 277 (377)
T PRK07671 222 VQNSTGGILGPQDSFLLLRGLKTLGIRMEEHETNSRAIAEFLNNHPKVNKVYYPGL 277 (377)
T ss_pred HHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCC
T ss_conf 99863577884777898706886999999999999999999861998449967688
No 254
>KOG2847 consensus
Probab=25.88 E-value=41 Score=14.31 Aligned_cols=57 Identities=25% Similarity=0.352 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 1068999997423557521112374202221001233463011122135678-9999999998643188
Q gi|254780537|r 83 LEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAM-IYIENIRKALTALDPS 150 (294)
Q Consensus 83 ~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~-~~a~~I~~~L~~~dP~ 150 (294)
.+..+.+++.+-.++...|++|.+.. .-+||++|=....-. --.+.|+=.|...|=.
T Consensus 54 n~e~l~~l~~~Rp~n~PLiTVSNH~S-----------~vDDP~~W~~L~~~~f~~~~~~RWtlaAhdIC 111 (286)
T KOG2847 54 NRETLTALLESRPPNRPLITVSNHMS-----------CVDDPLVWGILKLRLFLNLKNIRWTLAAHDIC 111 (286)
T ss_pred CHHHHHHHHHCCCCCCCEEEEECCHH-----------CCCCCEEEEEECHHHHCCHHHHHEEHHHHHCH
T ss_conf 39999999972899997289834200-----------26786057870305434555421101210012
No 255
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=25.87 E-value=47 Score=13.95 Aligned_cols=29 Identities=10% Similarity=0.069 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 43188899999989986301455337899
Q gi|254780537|r 146 ALDPSNAKKYELNAREYSEKIRNSILPLK 174 (294)
Q Consensus 146 ~~dP~~~~~y~~N~~~~~~~l~~l~~~~~ 174 (294)
-+.|-++-....-.+++.-+++.-.+...
T Consensus 273 ~lsP~~a~L~lrGL~TL~lRm~r~~~nA~ 301 (432)
T PRK06702 273 CMSPFNAYISNIGLETLHLRMERHSENAL 301 (432)
T ss_pred CCCCHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 67822568987278979999999999999
No 256
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=25.76 E-value=47 Score=13.94 Aligned_cols=50 Identities=8% Similarity=-0.070 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC
Q ss_conf 64318889999998998630145533789988630784473699826652
Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL 194 (294)
Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af 194 (294)
..++|..+-......+++.-+++.-.+.......-+....+.--++||..
T Consensus 230 ~~~~p~~a~l~~rGl~TL~lR~~~~~~nA~~lA~~L~~hp~V~~V~yPG~ 279 (366)
T PRK08247 230 AVLSPFDSWLLIRGMKTLALRMRQHEENAKALAAFLNEQPGVTDVLYPGK 279 (366)
T ss_pred CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 67793777788635250999999999999999999861997048956998
No 257
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=25.41 E-value=47 Score=13.94 Aligned_cols=135 Identities=13% Similarity=0.135 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCC----C-CCEEEEECCCCHHHHHHCCCEEEEE
Q ss_conf 8999999999864318889999998998630145533789988630784----4-7369982665214577529728872
Q gi|254780537|r 134 MIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDP----E-KRWFVTSEGCLVYLAEDFGFKSLYL 208 (294)
Q Consensus 134 ~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~----~-~~~~v~~H~af~Y~~~~yGl~~~~~ 208 (294)
+.+=++|+=.+--.-=.++...++-.++-+++- .|=.+.++++.+-+. + +-.+ =.||..-++---+
T Consensus 96 mSIydNiayG~r~~G~~~K~~L~e~Ve~sL~~A-ALWDEVKD~L~~sa~~LSGGQQQRL--------CIARalA~ePeVl 166 (248)
T TIGR00972 96 MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKA-ALWDEVKDRLHDSALGLSGGQQQRL--------CIARALAVEPEVL 166 (248)
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHHCCCCCCCCCHHHHHH--------HHHHHHHCCCCEE
T ss_conf 405567545245216337789999999998616-8713552421358897872688999--------9998752488521
Q ss_pred C--CCCCCCCC-CHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH----CCCEEEEEECCCCC--CCCCCCCCHH
Q ss_conf 2--68864000-78999999976201697189982789979999999982----99344432012378--7778868999
Q gi|254780537|r 209 W--PINSDSER-SPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYET----NASYGGVLYVDSLS--KPDGPAPTYL 279 (294)
Q Consensus 209 ~--~~~~~~ep-s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~----~~~~~~~~~~d~l~--~~~~~~~~Y~ 279 (294)
. ++.+.=+| +...|.+++..+|++ -.+|.+ .+|=..|..|+..| ...+++.=.++.+- ++...+.+|+
T Consensus 167 LlDEPTSALDPIaT~~IEeLi~eLk~~-YTivIV--THnMqQA~RiSD~tAFF~~G~LvE~G~T~~iF~~Pk~~~T~dYi 243 (248)
T TIGR00972 167 LLDEPTSALDPIATGKIEELIQELKKK-YTIVIV--THNMQQAARISDRTAFFYDGELVEYGDTEQIFTNPKEKRTEDYI 243 (248)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHC-CEEEEE--ECCHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCHHCC
T ss_conf 057888757877899999999987652-979988--17756789999999886567257407813876215652000101
Q ss_pred H
Q ss_conf 9
Q gi|254780537|r 280 D 280 (294)
Q Consensus 280 ~ 280 (294)
+
T Consensus 244 s 244 (248)
T TIGR00972 244 S 244 (248)
T ss_pred C
T ss_conf 4
No 258
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=25.37 E-value=48 Score=13.89 Aligned_cols=134 Identities=14% Similarity=0.104 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCC-CCCE-------EEEEC
Q ss_conf 21356789999999998-------643188899999989986301-45533789988630784-4736-------99826
Q gi|254780537|r 128 MSLTNAMIYIENIRKAL-------TALDPSNAKKYELNAREYSEK-IRNSILPLKTRIEKVDP-EKRW-------FVTSE 191 (294)
Q Consensus 128 ldp~~~~~~a~~I~~~L-------~~~dP~~~~~y~~N~~~~~~~-l~~l~~~~~~~~~~~p~-~~~~-------~v~~H 191 (294)
.|..|.+.. ..|+++. +...-+|+-.+++|-..|..+ +.++.+++-.-...+-. .++. ++...
T Consensus 170 VSm~Nir~v-~~la~~~giplvlDaaRfaENAyFIk~rE~gy~d~si~eI~rEmfs~aDg~tmSaKKD~~vniGG~ia~~ 248 (431)
T cd00617 170 VSMANLREV-RELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIGGFLALR 248 (431)
T ss_pred CCHHHHHHH-HHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEC
T ss_conf 678999999-9999980997998766788768999843530247999999999985402789970314532455678857
Q ss_pred C-CCHHHHHH-----CCCEEE-E---------ECCCCCCCC-----CCHHHHHHHHHHHCCCCCEEE--------EEEC-
Q ss_conf 6-52145775-----297288-7---------226886400-----078999999976201697189--------9827-
Q gi|254780537|r 192 G-CLVYLAED-----FGFKSL-Y---------LWPINSDSE-----RSPSMMRHAINQMRSHKIKFI--------FSES- 241 (294)
Q Consensus 192 ~-af~Y~~~~-----yGl~~~-~---------~~~~~~~~e-----ps~~~l~~~~~~ik~~~v~~i--------f~e~- 241 (294)
+ .+---++. -|+... + ..|+.+..+ -...+++-+.+.+++.+|+++ |.+.
T Consensus 249 D~~l~~~~~~~~i~~EGf~TYGGlaGRD~eAlA~GL~E~~d~~yl~~Ri~qv~yL~~~L~~~GvPvv~P~GGHav~iDA~ 328 (431)
T cd00617 249 DDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRLDEAGVPIVEPAGGHAVFIDAR 328 (431)
T ss_pred CHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEHH
T ss_conf 79999999754320058744356325349998654075436799997799999999999988996666897438997467
Q ss_pred ---------CCC-HHHHHHHHHHHCCCEEEE
Q ss_conf ---------899-799999999829934443
Q gi|254780537|r 242 ---------TNS-DQPAKQVAYETNASYGGV 262 (294)
Q Consensus 242 ---------~~~-~~~~~~ia~e~~~~~~~~ 262 (294)
+++ ...+..|=.+.|++..++
T Consensus 329 ~flPhip~~~fPa~aLa~~LY~~~GIR~~E~ 359 (431)
T cd00617 329 EFLPHIPQEQFPAQALAAELYLEAGVRAVEL 359 (431)
T ss_pred HHCCCCCHHHCCHHHHHHHHHHHCCCCEEEE
T ss_conf 7468998143918999999999709456854
No 259
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=25.34 E-value=39 Score=14.52 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 1122135678999999999
Q gi|254780537|r 125 HAWMSLTNAMIYIENIRKA 143 (294)
Q Consensus 125 H~Wldp~~~~~~a~~I~~~ 143 (294)
-+|+||+....++++|...
T Consensus 21 RVw~DP~~~~eI~~AitR~ 39 (150)
T PRK08570 21 RVWIDPEALEEVAEAITRE 39 (150)
T ss_pred CEEECHHHHHHHHHHHHHH
T ss_conf 2675827788999865299
No 260
>pfam07901 DUF1672 Protein of unknown function (DUF1672). This family is composed of hypothetical bacterial proteins of unknown function.
Probab=25.31 E-value=48 Score=13.88 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHHCCCCC
Q ss_conf 9269999999998604643
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASA 19 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~ 19 (294)
|+|++++++.+.+++++|.
T Consensus 1 MkK~i~~il~~~llL~GCs 19 (304)
T pfam07901 1 MRKLIKLILIATLLLSGCS 19 (304)
T ss_pred CCHHHHHHHHHHHHHCCCC
T ss_conf 9018999999999971334
No 261
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=25.28 E-value=48 Score=13.88 Aligned_cols=92 Identities=11% Similarity=0.129 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCC-----HH-HHHHCCCEEEEECCCCCC------CCCCHHHHHHHHHHHCCCC
Q ss_conf 45533789988630784473699826652-----14-577529728872268864------0007899999997620169
Q gi|254780537|r 166 IRNSILPLKTRIEKVDPEKRWFVTSEGCL-----VY-LAEDFGFKSLYLWPINSD------SERSPSMMRHAINQMRSHK 233 (294)
Q Consensus 166 l~~l~~~~~~~~~~~p~~~~~~v~~H~af-----~Y-~~~~yGl~~~~~~~~~~~------~eps~~~l~~~~~~ik~~~ 233 (294)
++.|...+...+..- .....+++.-... .| |.++.|++.+++...+++ .+....++.++.+.+++++
T Consensus 68 V~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v~~~d 146 (211)
T COG2344 68 VKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFVKKND 146 (211)
T ss_pred HHHHHHHHHHHHCCC-CCEEEEEECCCHHHHHHHCCCCHHHCCCEEEEEECCCHHHHCCCCCCEEEECHHHHHHHHHHCC
T ss_conf 999999999983877-4034899905708889860742332693599996178788375248814552688888988617
Q ss_pred CEEEEEECCCCHHHHHHHHH---HHCCCEE
Q ss_conf 71899827899799999999---8299344
Q gi|254780537|r 234 IKFIFSESTNSDQPAKQVAY---ETNASYG 260 (294)
Q Consensus 234 v~~if~e~~~~~~~~~~ia~---e~~~~~~ 260 (294)
|.+-.. ..+...++.+++ +.|++.+
T Consensus 147 v~iaiL--tVPa~~AQ~vad~Lv~aGVkGI 174 (211)
T COG2344 147 VEIAIL--TVPAEHAQEVADRLVKAGVKGI 174 (211)
T ss_pred CCEEEE--ECCHHHHHHHHHHHHHCCCCEE
T ss_conf 618999--7348989999999998387358
No 262
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=25.23 E-value=46 Score=14.02 Aligned_cols=19 Identities=5% Similarity=0.176 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 1122135678999999999
Q gi|254780537|r 125 HAWMSLTNAMIYIENIRKA 143 (294)
Q Consensus 125 H~Wldp~~~~~~a~~I~~~ 143 (294)
-+|+||+....++++|...
T Consensus 18 rVw~DP~~~~eI~~A~tR~ 36 (145)
T cd00481 18 RVWIDPNELEEIANANTRE 36 (145)
T ss_pred EEECCCHHHHHHHHHHHHH
T ss_conf 0560815777999865199
No 263
>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=25.16 E-value=48 Score=13.86 Aligned_cols=115 Identities=17% Similarity=0.118 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEE
Q ss_conf 356789999999998643188899999989986301-4553378998863078447369982665214577529728872
Q gi|254780537|r 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEK-IRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYL 208 (294)
Q Consensus 130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~-l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~ 208 (294)
|+.+......+ +.+..+.++..+.+....+.|.++ +.-|.-.++ ..+... ..- .. -..+-++...|+
T Consensus 474 pe~il~~~~~~-~~~~~~~~~~~~~~~~~~~~la~~glRvla~A~k----~~~~~~-~~~---~~---~~~E~dl~~lGl 541 (917)
T COG0474 474 PEVILERCKSI-GELEPLTEEGLRTLEEAVKELASEGLRVLAVAYK----KLDRAE-KDD---EV---DEIESDLVFLGL 541 (917)
T ss_pred HHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCC-CCC---CH---HHHHCCCEEEEE
T ss_conf 49999870343-4334454767999999999997878999997735----677332-333---10---122026040200
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE
Q ss_conf 2688640007899999997620169718998278997999999998299344
Q gi|254780537|r 209 WPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG 260 (294)
Q Consensus 209 ~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~ 260 (294)
.++ .+|--.+.++.++.+++.||+++ .=++.+...+..||++.|+...
T Consensus 542 ~g~---~Dppr~~v~~aI~~l~~AGI~v~-MiTGD~~~TA~aIa~~~Gi~~~ 589 (917)
T COG0474 542 TGI---EDPPREDVKEAIEELREAGIKVW-MITGDHVETAIAIAKECGIEAE 589 (917)
T ss_pred EEE---CCCCCCCHHHHHHHHHHCCCCEE-EECCCCHHHHHHHHHHHCCCCC
T ss_conf 121---28997118999999998899479-9879998999999998199867
No 264
>PTZ00097 60S ribosomal protein L19; Provisional
Probab=25.15 E-value=47 Score=13.95 Aligned_cols=17 Identities=18% Similarity=0.202 Sum_probs=7.3
Q ss_pred CCHHHHHHHCCCCEEEE
Q ss_conf 27124577603789999
Q gi|254780537|r 62 VTSADAIKIQNADLILC 78 (294)
Q Consensus 62 ~tp~d~~~i~~Adliv~ 78 (294)
.|-.|++.|-+-.+|+.
T Consensus 34 ~sR~dIR~LI~dG~I~~ 50 (175)
T PTZ00097 34 NSRKSVRKLIKDGLIIR 50 (175)
T ss_pred HHHHHHHHHHHCCCEEE
T ss_conf 41999999998897786
No 265
>pfam08981 consensus
Probab=25.11 E-value=48 Score=13.86 Aligned_cols=14 Identities=7% Similarity=0.242 Sum_probs=5.6
Q ss_pred HHHHHCCCCCEEEE
Q ss_conf 99762016971899
Q gi|254780537|r 225 AINQMRSHKIKFIF 238 (294)
Q Consensus 225 ~~~~ik~~~v~~if 238 (294)
.++.+++.+++++.
T Consensus 74 ~~~~L~~~G~~V~t 87 (181)
T pfam08981 74 VRKELEERGVKVLT 87 (181)
T ss_pred HHHHHHHCCCEEEE
T ss_conf 99999977988999
No 266
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=25.11 E-value=48 Score=13.86 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=11.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 92699999999986046433588
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQK 23 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~ 23 (294)
|+|+++++++ +++.+|......
T Consensus 1 M~r~~l~~~~-l~L~gCa~~~~~ 22 (224)
T PRK12698 1 MARYILLALA-LLLAGCSSTPKK 22 (224)
T ss_pred CHHHHHHHHH-HHHHCCCCCCCC
T ss_conf 9779999999-998365688988
No 267
>pfam05540 Serpulina_VSP Serpulina hyodysenteriae variable surface protein. This family consists of several variable surface proteins from Serpulina hyodysenteriae.
Probab=25.07 E-value=38 Score=14.54 Aligned_cols=19 Identities=32% Similarity=0.322 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHHCCCCC
Q ss_conf 9269999999998604643
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASA 19 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~ 19 (294)
|||+++..++++++.+++.
T Consensus 1 MKK~lL~~~a~lti~~~Sv 19 (377)
T pfam05540 1 MKKFLLTALAILTIASASA 19 (377)
T ss_pred CCCHHHHHHHHHHHHHHHH
T ss_conf 9043899999999986566
No 268
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=24.54 E-value=50 Score=13.79 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=44.7
Q ss_pred HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 7529728872268864000789999999762016971899827899799999999829934443
Q gi|254780537|r 199 EDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV 262 (294)
Q Consensus 199 ~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294)
++-|+...++.++. +|--.+.++.++.+++.||+++ .=++.++..+..||++.|+....+
T Consensus 533 de~dl~flGlv~~~---DPpR~e~~~aI~~l~~aGI~V~-MITGD~~~TA~aIA~~lGI~~~~v 592 (900)
T PRK10517 533 DESDLILEGYIAFL---DPPKETTAPALKALKASGITVK-ILTGDSELVAAKVCHEVGLDAGEV 592 (900)
T ss_pred CCCCCEEEEEEEEC---CCCCCHHHHHHHHHHHCCCEEE-EECCCCHHHHHHHHHHHCCCCCCC
T ss_conf 66674799999730---7897109999999997799389-989999899999999819995444
No 269
>pfam01280 Ribosomal_L19e Ribosomal protein L19e.
Probab=24.29 E-value=49 Score=13.84 Aligned_cols=19 Identities=11% Similarity=0.337 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 1122135678999999999
Q gi|254780537|r 125 HAWMSLTNAMIYIENIRKA 143 (294)
Q Consensus 125 H~Wldp~~~~~~a~~I~~~ 143 (294)
-+|+||+....++++|...
T Consensus 20 RVw~DP~~~~eI~~A~tR~ 38 (148)
T pfam01280 20 RVWIDPNELSEIADAITRE 38 (148)
T ss_pred CEEECHHHHHHHHHHHHHH
T ss_conf 1563817788999854299
No 270
>PRK10877 thiol:disulfide interchange protein DsbC; Provisional
Probab=24.26 E-value=50 Score=13.76 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEEC
Q ss_conf 9269999999998604643358828999752899999985189148999626
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVE 52 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~ 52 (294)
|||.|+++.++++.+++.+.++. .-+..-.+++ .++|.++-+
T Consensus 1 mkk~l~~~~~l~~~~s~~a~aDe-------a~i~~~l~k~---g~~v~~V~~ 42 (232)
T PRK10877 1 MKKGFMLFTLLAAAFSGFAHADD-------AAIQQTLAKL---GIQSADIQP 42 (232)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHC---CCCCCEECC
T ss_conf 92669999999999862524379-------9999999983---998313556
No 271
>cd01417 Ribosomal_L19e_E Ribosomal protein L19e, eukaryotic. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=24.25 E-value=48 Score=13.89 Aligned_cols=16 Identities=6% Similarity=0.146 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 1221356789999999
Q gi|254780537|r 126 AWMSLTNAMIYIENIR 141 (294)
Q Consensus 126 ~Wldp~~~~~~a~~I~ 141 (294)
+|+||+....++++|.
T Consensus 19 Vw~DP~~~~eI~~A~t 34 (164)
T cd01417 19 VWLDPNEISEISNANS 34 (164)
T ss_pred EEECCHHHHHHHHHHH
T ss_conf 5508157779998642
No 272
>PRK03757 hypothetical protein; Provisional
Probab=24.18 E-value=50 Score=13.74 Aligned_cols=18 Identities=22% Similarity=0.300 Sum_probs=11.9
Q ss_pred CHHHHHHHHHHHHHCCCC
Q ss_conf 926999999999860464
Q gi|254780537|r 1 MLRYFICLLFSYIPMSAS 18 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~ 18 (294)
|||.+++++++.++++++
T Consensus 1 mkk~~l~~~l~a~~~~~~ 18 (191)
T PRK03757 1 MKKTLLGLTLGSLLFSAG 18 (191)
T ss_pred CCHHHHHHHHHHHHHHCC
T ss_conf 904399999999986304
No 273
>pfam09748 Med10 Transcription factor subunit Med10 of Mediator complex. Med10 is one of the protein subunits of the Mediator complex, tethered to Rgr1 protein. The Mediator complex is required for the transcription of most RNA polymerase II (Pol II)-transcribed genes. Med10 specifically mediates basal-level HIS4 transcription via Gcn4, and, additionally, there is a putative requirement for Med10 in Bas2-mediated transcription. Med10 is part of the middle region of Mediator.
Probab=24.03 E-value=51 Score=13.72 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=19.2
Q ss_pred CCCCCCHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 334630111221----------------356789999999998643188899999
Q gi|254780537|r 118 VDSEPNPHAWMS----------------LTNAMIYIENIRKALTALDPSNAKKYE 156 (294)
Q Consensus 118 ~~~~~dpH~Wld----------------p~~~~~~a~~I~~~L~~~dP~~~~~y~ 156 (294)
-+.+-||++|+- .+..+..-..+.+.|++.+|+-.+.|+
T Consensus 64 ID~GrNPdiyTre~ve~~~~~Nq~~kGK~~a~~~fr~~L~~el~~~fPe~~~~~~ 118 (120)
T pfam09748 64 IDDGRNPDLYTREFVELVLRKNQYVKGKMHAFKKFRDVLAEELSEAFPELVAEYR 118 (120)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_conf 8756584699999999999981999976999999999999999998858798751
No 274
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=23.89 E-value=51 Score=13.71 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=11.0
Q ss_pred HHHHHHHHHCCCEEEEEEEE
Q ss_conf 89999998518914899962
Q gi|254780537|r 32 IIGDITQNIAKDLVTVTTLV 51 (294)
Q Consensus 32 pl~~iv~~I~gd~v~V~~li 51 (294)
-+..++++++.-..+|+.+.
T Consensus 25 ~v~~La~~La~rGheV~V~t 44 (405)
T TIGR03449 25 YILETATELARRGIEVDIFT 44 (405)
T ss_pred HHHHHHHHHHHCCCEEEEEE
T ss_conf 99999999997899699993
No 275
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=23.87 E-value=51 Score=13.70 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHCCCCCCC
Q ss_conf 26999999999860464335
Q gi|254780537|r 2 LRYFICLLFSYIPMSASATT 21 (294)
Q Consensus 2 ~r~~~~l~~~~~~~~~~~~~ 21 (294)
||++++.++++++++|+...
T Consensus 1 kr~l~l~~~~l~LsGC~~~~ 20 (220)
T PRK12407 1 KRFLILTPMVLALCGCESPA 20 (220)
T ss_pred CCCHHHHHHHHHHHCCCCCC
T ss_conf 91579999999973658888
No 276
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=23.79 E-value=51 Score=13.69 Aligned_cols=42 Identities=12% Similarity=0.249 Sum_probs=27.5
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCC--EEEEEECCCCHHHHHHHHH
Q ss_conf 886400078999999976201697--1899827899799999999
Q gi|254780537|r 211 INSDSERSPSMMRHAINQMRSHKI--KFIFSESTNSDQPAKQVAY 253 (294)
Q Consensus 211 ~~~~~eps~~~l~~~~~~ik~~~v--~~if~e~~~~~~~~~~ia~ 253 (294)
..|..+++-+-|+++.++.++... +++|.| +.+-.+++.+..
T Consensus 522 AHP~D~~Gk~lI~~i~~~s~~~~~~~rivFLe-dYDm~lAr~Lv~ 565 (778)
T cd04299 522 AHPADEPGKELIQEIVEFSRRPEFRGRIVFLE-DYDMALARHLVQ 565 (778)
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEC-CCCHHHHHHHHC
T ss_conf 89987667999999999863805577589967-988699987506
No 277
>PRK10598 hypothetical protein; Provisional
Probab=23.66 E-value=51 Score=13.68 Aligned_cols=20 Identities=5% Similarity=0.124 Sum_probs=10.5
Q ss_pred CHHHHHHHHH-HHHHCCCCCC
Q ss_conf 9269999999-9986046433
Q gi|254780537|r 1 MLRYFICLLF-SYIPMSASAT 20 (294)
Q Consensus 1 M~r~~~~l~~-~~~~~~~~~~ 20 (294)
|||+|+...+ +..++++|+.
T Consensus 1 mkk~~l~~~l~l~~llsGC~~ 21 (186)
T PRK10598 1 MKKFLLAAALLVSGLLVGCNQ 21 (186)
T ss_pred CCHHHHHHHHHHHHHHHCCCC
T ss_conf 912699999999999714353
No 278
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=23.46 E-value=52 Score=13.65 Aligned_cols=75 Identities=15% Similarity=0.092 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 078999999976201-69718998278997999999998-299344432012378777886899999999999998620
Q gi|254780537|r 217 RSPSMMRHAINQMRS-HKIKFIFSESTNSDQPAKQVAYE-TNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 217 ps~~~l~~~~~~ik~-~~v~~if~e~~~~~~~~~~ia~e-~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
.-+..+.+.++.+|+ .++++...=.-.+++.++.+++- ...-+++--.+.-+.+.. .+..++-+..=+..|++||
T Consensus 185 ~~~~~l~~~i~~ik~~t~~Pv~vGFGIs~~e~v~~~~~~~aDGvIVGSaiV~~i~~~~--~~~~~~~i~~f~~~lk~ai 261 (263)
T CHL00200 185 ELDKKLKKLIETIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILLGSS--PEKGLDQLSEFCKVAKKSI 261 (263)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHH
T ss_conf 4518799999999973699848735879999999997459999998789999998559--0768999999999999997
No 279
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=23.26 E-value=52 Score=13.62 Aligned_cols=133 Identities=12% Similarity=0.097 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCC-CCCE-------EEEEC
Q ss_conf 21356789999999998-------643188899999989986301-45533789988630784-4736-------99826
Q gi|254780537|r 128 MSLTNAMIYIENIRKAL-------TALDPSNAKKYELNAREYSEK-IRNSILPLKTRIEKVDP-EKRW-------FVTSE 191 (294)
Q Consensus 128 ldp~~~~~~a~~I~~~L-------~~~dP~~~~~y~~N~~~~~~~-l~~l~~~~~~~~~~~p~-~~~~-------~v~~H 191 (294)
.|..|.+.. ..|++.. +...-+|+-.+++|-..|..+ +.++.+++-.-...+-- .++. ++...
T Consensus 195 VSm~Nir~v-~~la~~~gipl~lDaaRfaENAyFIk~RE~gy~~~si~eI~rEmfs~aDg~tmSaKKD~~vniGG~ia~~ 273 (459)
T PRK13237 195 VSMANMRAV-RELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEILKEMFSYADGATMSGKKDCLVNIGGFLAMN 273 (459)
T ss_pred CCHHHHHHH-HHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCCCCCCCEEEEC
T ss_conf 468999999-9999980996998766788768999834420148999999999974402799983202534655679857
Q ss_pred CCCHHHHHHC-------CCEEEE----------ECCCCCCCC-----CCHHHHHHHHHHHCCCCCEEE--------EEEC
Q ss_conf 6521457752-------972887----------226886400-----078999999976201697189--------9827
Q gi|254780537|r 192 GCLVYLAEDF-------GFKSLY----------LWPINSDSE-----RSPSMMRHAINQMRSHKIKFI--------FSES 241 (294)
Q Consensus 192 ~af~Y~~~~y-------Gl~~~~----------~~~~~~~~e-----ps~~~l~~~~~~ik~~~v~~i--------f~e~ 241 (294)
+- ..|.+-- |+...+ ..|+.+..+ -.+.+++-+.+.+++.+|+++ |.+.
T Consensus 274 d~-~l~~~~~~~~i~~EGf~TYGGlagRDmeAlA~GL~E~~de~yl~~Ri~qv~yl~~~L~~~GVPvv~P~GGHav~iDA 352 (459)
T PRK13237 274 DD-ELFQEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQDDYIRHRIGQVRYLGEKLLAAGVPIVEPVGGHAVFLDA 352 (459)
T ss_pred CH-HHHHHHHHHEEECCCCCCCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEH
T ss_conf 79-99999985511205875545622646999963437543679999889999999999998799703689852899746
Q ss_pred ----------CCC-HHHHHHHHHHHCCCEEEE
Q ss_conf ----------899-799999999829934443
Q gi|254780537|r 242 ----------TNS-DQPAKQVAYETNASYGGV 262 (294)
Q Consensus 242 ----------~~~-~~~~~~ia~e~~~~~~~~ 262 (294)
+++ ...+..|=.+.|++..++
T Consensus 353 ~~fLPhip~~~fPa~aLa~~LY~~~GIR~~E~ 384 (459)
T PRK13237 353 RRFLPHIPQDQFPAQALAAELYIDSGVRSMER 384 (459)
T ss_pred HHHCCCCCHHHCCHHHHHHHHHHHCCCCEEEE
T ss_conf 77568998033929999999999719346854
No 280
>TIGR00877 purD phosphoribosylamine--glycine ligase; InterPro: IPR000115 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) catalyzes the second step in the de novo biosynthesis of purine: ATP + 5-phosphoribosylamine + glycine = ADP + P_i + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART.; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process.
Probab=23.18 E-value=52 Score=13.61 Aligned_cols=70 Identities=20% Similarity=0.054 Sum_probs=45.3
Q ss_pred HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCE-EEEEECCCCHHHHHHHHHHHCCCE-EEEEECCCCCC
Q ss_conf 577529728872268864000789999999762016971-899827899799999999829934-44320123787
Q gi|254780537|r 197 LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIK-FIFSESTNSDQPAKQVAYETNASY-GGVLYVDSLSK 270 (294)
Q Consensus 197 ~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~-~if~e~~~~~~~~~~ia~e~~~~~-~~~~~~d~l~~ 270 (294)
-.+..||...+...-..--|- .=+..++++++++|| ...++...+++-++.-.++.+.|. + +.=-|.|+.
T Consensus 87 ~le~~Gi~~FGP~k~AA~LE~---SK~FaK~fm~~~gIPGta~Y~~Ft~~eea~~y~~~~g~PA~~-VVKadGLAA 158 (459)
T TIGR00877 87 ALEEAGIPVFGPTKEAAQLEA---SKAFAKDFMKRYGIPGTAEYEVFTDPEEAKSYIQEKGAPAEI-VVKADGLAA 158 (459)
T ss_pred HHHHCCCCEECCCHHHHHHHC---CHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHCCCCCCE-EEECCCCCC
T ss_conf 898679514568878864332---878999999964898322210008989999999841889748-980566657
No 281
>PRK01742 tolB translocation protein TolB; Provisional
Probab=23.12 E-value=53 Score=13.61 Aligned_cols=29 Identities=0% Similarity=-0.184 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 35678999999999864318889999998
Q gi|254780537|r 130 LTNAMIYIENIRKALTALDPSNAKKYELN 158 (294)
Q Consensus 130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N 158 (294)
+...+.+++.|+|..-+.--..+.+|..+
T Consensus 142 ~~~~R~~aH~iaD~Iye~lTG~~G~F~tr 170 (430)
T PRK01742 142 NKWLRYGAHTVSDEVFEKLTAIRGAFRTR 170 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 89989888999999999862987431004
No 282
>TIGR00020 prfB peptide chain release factor 2; InterPro: IPR004374 In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a superfamily IPR000352 from INTERPRO of RF-1, RF-2, mitochondrial, RF-H, etc proteins.; GO: 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=23.12 E-value=53 Score=13.61 Aligned_cols=22 Identities=18% Similarity=0.293 Sum_probs=16.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 4630111221356789999999
Q gi|254780537|r 120 SEPNPHAWMSLTNAMIYIENIR 141 (294)
Q Consensus 120 ~~~dpH~Wldp~~~~~~a~~I~ 141 (294)
.-.||-+|-||..|..+.+.-.
T Consensus 40 e~~dP~fW~D~~rAq~v~~e~~ 61 (373)
T TIGR00020 40 EMEDPNFWNDQERAQKVIKERS 61 (373)
T ss_pred HHCCCCCCCHHHHHHHHHHHHH
T ss_conf 7507866612589999999999
No 283
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=22.99 E-value=53 Score=13.59 Aligned_cols=87 Identities=7% Similarity=0.111 Sum_probs=35.2
Q ss_pred ECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHH-HCCCC-------------CE-EEEEE-CCCCHHHHHHHHH
Q ss_conf 266521457752972887226886400078999999976-20169-------------71-89982-7899799999999
Q gi|254780537|r 190 SEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQ-MRSHK-------------IK-FIFSE-STNSDQPAKQVAY 253 (294)
Q Consensus 190 ~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~-ik~~~-------------v~-~if~e-~~~~~~~~~~ia~ 253 (294)
..+.|-|+..|.. +++ .+ .|.-.++.++.+.+.. ..... -+ ++|+. ...+........+
T Consensus 1035 D~dG~L~i~GR~d-~~i---Ki-~GerV~l~EVE~~L~~~~~~~~~~aVv~vpD~~~GE~lv~~~~~~~~~~~~l~~~l~ 1109 (1150)
T PRK08633 1035 DEDGFLTITDRYS-RFA---KI-GGEMVPLGAVEDELAKILGTTVVFAVTAVPDEKKGEKIVLLYTCEAEDAETVKEAIK 1109 (1150)
T ss_pred CCCCEEEEEEECC-CEE---EE-CCEEECHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEECCCCCHHHHHHHHH
T ss_conf 5898599986050-048---86-999999899999998579977079999665788880899999089999899999997
Q ss_pred HHCCCEE----EEEECCCCCCCCCCCCCHHHH
Q ss_conf 8299344----432012378777886899999
Q gi|254780537|r 254 ETNASYG----GVLYVDSLSKPDGPAPTYLDL 281 (294)
Q Consensus 254 e~~~~~~----~~~~~d~l~~~~~~~~~Y~~~ 281 (294)
+.+.+.. .+.++|.+..-....-||..+
T Consensus 1110 ~~~Lp~ymvP~~i~~Vd~lPlt~sGKiD~kaL 1141 (1150)
T PRK08633 1110 ESELPNLWKPSRYVQVEAIPLLGSGKLDLKGV 1141 (1150)
T ss_pred HCCCCCCCCCCEEEEECCCCCCCCCCCCHHHH
T ss_conf 76999012889899989838999988549999
No 284
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=22.89 E-value=53 Score=13.58 Aligned_cols=64 Identities=19% Similarity=0.359 Sum_probs=32.9
Q ss_pred CCCCEEEEECH--------HHHHHHHHHCCCEEEEEEEECCCC----CCCCC-----CCCHHHHHHHCCCCEEEEECCCC
Q ss_conf 58828999752--------899999985189148999626889----80120-----22712457760378999988761
Q gi|254780537|r 21 TQKKVVLSSFS--------IIGDITQNIAKDLVTVTTLVEAGN----DSHSY-----QVTSADAIKIQNADLILCNGLHL 83 (294)
Q Consensus 21 ~~~~~Vv~s~~--------pl~~iv~~I~gd~v~V~~li~~g~----dpH~y-----e~tp~d~~~i~~Adliv~~G~~~ 83 (294)
+++|.|++--. -+..+++.++-.- ++++...|. +|+.. ..++..-..+++||+++..|..|
T Consensus 206 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv--~tt~~gkg~~p~~hp~~~G~~G~~g~~~a~~~l~~aDlvl~lG~rl 283 (574)
T PRK06466 206 AKRPVIYSGGGVILGNASALLTELAHLLNLPV--TNTLMGLGGFPGTDRQFLGMLGMHGTYEANMAMHHADVILAVGARF 283 (574)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCC--CHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCC
T ss_conf 79988997886251208999999999868881--0232146766678864368777778899999986079654347667
Q ss_pred CHH
Q ss_conf 068
Q gi|254780537|r 84 EET 86 (294)
Q Consensus 84 E~~ 86 (294)
..+
T Consensus 284 ~~~ 286 (574)
T PRK06466 284 DDR 286 (574)
T ss_pred CCC
T ss_conf 753
No 285
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=22.86 E-value=53 Score=13.57 Aligned_cols=45 Identities=11% Similarity=0.166 Sum_probs=31.1
Q ss_pred CCCCCHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 400078999999976201-697189982789979999999982993
Q gi|254780537|r 214 DSERSPSMMRHAINQMRS-HKIKFIFSESTNSDQPAKQVAYETNAS 258 (294)
Q Consensus 214 ~~eps~~~l~~~~~~ik~-~~v~~if~e~~~~~~~~~~ia~e~~~~ 258 (294)
...+..+.+..+.+.+++ -++++.|.++-.+++.++..-.+.|.+
T Consensus 69 ~~~~~~~~v~~F~~~L~~~~~l~v~~~DEr~TS~~A~~~l~~~~~~ 114 (141)
T PRK00109 69 TEGPMTERARKFANRLEGRFGLPVELVDERLTTVEAERMLFEAGVS 114 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCC
T ss_conf 8448899999999999997299879862432799999999973653
No 286
>PRK13122 consensus
Probab=22.81 E-value=53 Score=13.57 Aligned_cols=37 Identities=5% Similarity=0.135 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHH
Q ss_conf 89999999762016-97189982789979999999982
Q gi|254780537|r 219 PSMMRHAINQMRSH-KIKFIFSESTNSDQPAKQVAYET 255 (294)
Q Consensus 219 ~~~l~~~~~~ik~~-~v~~if~e~~~~~~~~~~ia~e~ 255 (294)
..++.+.++.+|+. +++++.-=.-.+++.++.+.+.+
T Consensus 171 ~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~i~~~A 208 (242)
T PRK13122 171 HPELKRKIESIKAIANVPVVAGFGIRTPQHVADIKEVA 208 (242)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHC
T ss_conf 58899999999972599858715879999999998119
No 287
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171.
Probab=22.74 E-value=54 Score=13.56 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCCCCCEEEEECCCCHH--HHHHCCCEEE-----EE
Q ss_conf 99999998643188899999989986301-4553378998863078447369982665214--5775297288-----72
Q gi|254780537|r 137 IENIRKALTALDPSNAKKYELNAREYSEK-IRNSILPLKTRIEKVDPEKRWFVTSEGCLVY--LAEDFGFKSL-----YL 208 (294)
Q Consensus 137 a~~I~~~L~~~dP~~~~~y~~N~~~~~~~-l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y--~~~~yGl~~~-----~~ 208 (294)
...-.+.+....|.- .|++|..-+... +.+ .+-...+. .. +-..-....| ....|-|..- ++
T Consensus 789 ~~~~~~~~~~~~PGf--~YD~NH~fW~~gel~~---~f~~av~~---~~--~y~~~~~~~Y~~~~g~f~L~~~~Wg~~P~ 858 (982)
T TIGR02171 789 ATERTNVVYEKVPGF--VYDENHNFWANGELPE---EFVDAVKE---SV--LYESALRLDYVILRGLFLLPTSCWGSVPV 858 (982)
T ss_pred HHHHHHHHHHCCCCE--EEECCCCCCCCCCCHH---HHHHHHHC---CC--CCCCCCCCCCCCHHHCEECCCCCCCCCCE
T ss_conf 543578998628973--8717758356876868---99998730---16--88731125751101101056788544451
Q ss_pred C-----CCCCC---CCCCHHHHHHHHHHHCCCCCEEEEE-ECCCC--------------HHHHHHHHHHHCCCEEEE-EE
Q ss_conf 2-----68864---0007899999997620169718998-27899--------------799999999829934443-20
Q gi|254780537|r 209 W-----PINSD---SERSPSMMRHAINQMRSHKIKFIFS-ESTNS--------------DQPAKQVAYETNASYGGV-LY 264 (294)
Q Consensus 209 ~-----~~~~~---~eps~~~l~~~~~~ik~~~v~~if~-e~~~~--------------~~~~~~ia~e~~~~~~~~-~~ 264 (294)
. ....+ -+-+...|+.+++.-++.||++|-+ -||.| ...++.|+.+.. +.... ..
T Consensus 859 ~~~d~~~~~~~~~~~~~n~~~lK~~i~~t~~kGvk~ig~i~PQ~PGY~nTgsFG~yGp~RS~A~~iid~~~-~m~k~Yph 937 (982)
T TIGR02171 859 VNVDAVLSDADQQKIEENLESLKAFIDETEKKGVKVIGTIFPQSPGYKNTGSFGRYGPRRSSAKKIIDSVK-KMEKVYPH 937 (982)
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCCC
T ss_conf 54164007777288998889888899887417818999842888876777656788987325789999986-31020780
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 12378777886899999999999998
Q gi|254780537|r 265 VDSLSKPDGPAPTYLDLLRFSLTKIV 290 (294)
Q Consensus 265 ~d~l~~~~~~~~~Y~~~m~~N~~~l~ 290 (294)
..-+-+.-...++|-+-|-.|.++|-
T Consensus 938 f~~fDENK~G~HDYtD~MA~n~dHLS 963 (982)
T TIGR02171 938 FILFDENKDGLHDYTDDMANNSDHLS 963 (982)
T ss_pred EEEEECCCCCCCCCCCCCCCCCCCHH
T ss_conf 69971268988846533257875055
No 288
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=22.60 E-value=39 Score=14.50 Aligned_cols=44 Identities=25% Similarity=0.389 Sum_probs=25.5
Q ss_pred CCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 2271245776037899998876106899999742355752111237
Q gi|254780537|r 61 QVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDG 106 (294)
Q Consensus 61 e~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~ 106 (294)
|+.-.|+-=|+|||++=- .+++.--..+...+....++|.++.|
T Consensus 176 QlacADLviLnKaDllda--ag~~~v~a~i~~~lpr~v~iv~a~~G 219 (349)
T TIGR02475 176 QLACADLVILNKADLLDA--AGLARVRAEIAAELPRAVKIVEASHG 219 (349)
T ss_pred HHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHCCCCCEEEECCCC
T ss_conf 999889998534300488--89999999999735887517751478
No 289
>PRK13135 consensus
Probab=22.57 E-value=54 Score=13.54 Aligned_cols=47 Identities=11% Similarity=0.160 Sum_probs=23.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf 6886400078999999976201-6971899827899799999999829
Q gi|254780537|r 210 PINSDSERSPSMMRHAINQMRS-HKIKFIFSESTNSDQPAKQVAYETN 256 (294)
Q Consensus 210 ~~~~~~eps~~~l~~~~~~ik~-~~v~~if~e~~~~~~~~~~ia~e~~ 256 (294)
+......+-..++.+.+..+|+ .++++..-=.-.+++.++.+.+..+
T Consensus 180 GvTG~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGI~~~e~v~~i~~~AD 227 (267)
T PRK13135 180 GVTGARSGVEATVGGNVAKIREKITVPVVVGFGISTPQQAADVAAMAD 227 (267)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCC
T ss_conf 666776444488999999998606898489816799999999980599
No 290
>PRK10159 outer membrane phosphoporin protein E; Provisional
Probab=22.53 E-value=54 Score=13.53 Aligned_cols=20 Identities=30% Similarity=0.218 Sum_probs=14.9
Q ss_pred CHHHHHHHHHHHHHCCCCCC
Q ss_conf 92699999999986046433
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASAT 20 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~ 20 (294)
|||.++++++..++++.++.
T Consensus 1 MKk~~lA~ai~a~l~s~~a~ 20 (351)
T PRK10159 1 MKKSTLALVVMGIVASASVQ 20 (351)
T ss_pred CCHHHHHHHHHHHHHCCCCC
T ss_conf 94738999999998726531
No 291
>COG4047 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.52 E-value=54 Score=13.53 Aligned_cols=125 Identities=18% Similarity=0.058 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEE
Q ss_conf 13567899999999986431888999999899863014553378998863078447369982665214577529728872
Q gi|254780537|r 129 SLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYL 208 (294)
Q Consensus 129 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~ 208 (294)
|+-|.+..-+...... +..+--...-.+|.+.|.+++..+-..+...+.. ...++++|-+-.-|+|-++-.- +.
T Consensus 89 s~fnrrlieqKlrRi~-ra~~fl~~L~~~~~~~yyedm~~l~~~la~~lg~-d~esKT~VFsVKmfgYA~r~~~----g~ 162 (243)
T COG4047 89 SRFNRRLIEQKLRRIR-RAESFLETLTEENIEVYYEDMSLLLEALARALGA-DRESKTVVFSVKMFGYAARIVL----GR 162 (243)
T ss_pred CCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEHHHHHHHHHHH----CC
T ss_conf 8166887999999999-8888887765631999986389999999999677-8544528988467678999983----67
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 26886400078999999976201697189982789979999999982993444320123787
Q gi|254780537|r 209 WPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSK 270 (294)
Q Consensus 209 ~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~ 270 (294)
..+.|-.=|=|-|..=..-..+..+ ..+++....||+++|++ .+.+|++-.
T Consensus 163 f~pyp~eIPIPvD~Ri~rlT~~~tn--------e~Pq~~W~~iAResGIP---pLHiDSILW 213 (243)
T COG4047 163 FRPYPFEIPIPVDVRIARLTRKLTN--------EAPQKFWDKIARESGIP---PLHIDSILW 213 (243)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCC---CCEECCEEC
T ss_conf 8887757887404899999998753--------14799999998743989---621300000
No 292
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B; InterPro: IPR010186 Some anaerobic bacteria can conserve energy by a soluble substrate level phosphorylation system which reduces glycine to acetyl-phosphate . The exact mechanism by which this conversion occurs is not currently known, but the glycine reductase system includes three sequentially acting proteins known as protein A, protein B and protein C. Protein B, the substrate-specific component of this complex, is a selenoprotein thought to convert glycine to a protein-bound Se-carboxymethyl selenoether intermediate. This intermediate is then thought to be passed to protein A, another selenoprotein, which uses it to acetylate the final component of this system, protein C. Protein C subsequently phosphorylates this acetyl group, generating acetyl phosphate. This entry represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this entry, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity acting on X-H and Y-H to form an X-Y bond with a disulfide as acceptor, 0030700 glycine reductase complex.
Probab=22.46 E-value=54 Score=13.52 Aligned_cols=107 Identities=6% Similarity=0.033 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHH-HHHHHCCC-CCCCCCCCCCC
Q ss_conf 52899999985189148999626889801202271245776037899998876106899-99974235-57521112374
Q gi|254780537|r 30 FSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYM-KYFTNLKK-GTKIITVTDGI 107 (294)
Q Consensus 30 ~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~-~~~~~~~~-~~~~i~~~~~i 107 (294)
.--..-+++.+-|+.+..+..+|-=. ..-| -..++.+++|.+-+....|.=|.-. +.++++.. +--..++ +++
T Consensus 185 ~rav~mlvkklkGeef~teyPmPvfd---~v~P-~~a~~~~~kakia~vtsGGivPk~nPd~iesssaskyG~ydi-~~~ 259 (431)
T TIGR01917 185 KRAVKMLVKKLKGEEFVTEYPMPVFD---RVVP-NRAVKDISKAKIALVTSGGIVPKGNPDRIESSSASKYGKYDI-DSV 259 (431)
T ss_pred HHHHHHHHHHHCCCCEECCCCCCCCC---CCCC-CHHHHHHHHCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC-HHH
T ss_conf 78999999863465100037874101---1366-167876432106777406513488876321111112454340-234
Q ss_pred CHHHHHHCCCCCCCCCHHHH-HHHHHHHHHHHHHHH
Q ss_conf 20222100123346301112-213567899999999
Q gi|254780537|r 108 NPIGVSEDTSVDSEPNPHAW-MSLTNAMIYIENIRK 142 (294)
Q Consensus 108 ~~~~~~~~~~~~~~~dpH~W-ldp~~~~~~a~~I~~ 142 (294)
+.+...+....||++||-+- -+++++. -++.+++
T Consensus 260 d~l~~~~~etahGG~dP~yan~~~drv~-Pvdvlrd 294 (431)
T TIGR01917 260 DDLSEEDHETAHGGYDPVYANEEADRVL-PVDVLRD 294 (431)
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCEE-HHHHHHH
T ss_conf 4332114421257778632477887331-0676542
No 293
>PRK03629 tolB translocation protein TolB; Provisional
Probab=22.35 E-value=54 Score=13.51 Aligned_cols=29 Identities=0% Similarity=-0.240 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13567899999999986431888999999
Q gi|254780537|r 129 SLTNAMIYIENIRKALTALDPSNAKKYEL 157 (294)
Q Consensus 129 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~ 157 (294)
.+...+.+++.|+|..-+.--..+..|..
T Consensus 137 ~~~~lR~~aH~isD~Iy~~lTG~~G~F~T 165 (430)
T PRK03629 137 NKQWLRYAGHTASDEVFEKLTGIKGAFRT 165 (430)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 87999999999999999985199754101
No 294
>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]
Probab=22.25 E-value=55 Score=13.49 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 899999997620169718-998278997999999998299344432
Q gi|254780537|r 219 PSMMRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGVL 263 (294)
Q Consensus 219 ~~~l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~~ 263 (294)
...|+.+++.+++.++++ +|.++ ++..++. ++++|++.+++.
T Consensus 110 ~~~l~~~v~~L~~~GirVSLFiD~--d~~qi~a-a~~~gA~~IELh 152 (243)
T COG0854 110 LDKLRDAVRRLKNAGIRVSLFIDP--DPEQIEA-AAEVGAPRIELH 152 (243)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECC--CHHHHHH-HHHHCCCEEEEE
T ss_conf 246999999998579769997279--9899999-998499879984
No 295
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=22.22 E-value=55 Score=13.49 Aligned_cols=44 Identities=16% Similarity=0.313 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 89999999762016971899827899799999999829934443
Q gi|254780537|r 219 PSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV 262 (294)
Q Consensus 219 ~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294)
|.++.+.++.+|+++|+|=+..-...=...+.|+++||....+.
T Consensus 122 pgdI~~ti~~lk~~~IrvsvI~l~aEv~I~k~l~~~TgG~y~V~ 165 (183)
T cd01453 122 PGNIYETIDKLKKENIRVSVIGLSAEMHICKEICKATNGTYKVI 165 (183)
T ss_pred CCCHHHHHHHHHHCCCEEEEEEECHHHHHHHHHHHHHCCEEEEE
T ss_conf 76499999999983978999974278999999999839976875
No 296
>COG2241 CobL Precorrin-6B methylase 1 [Coenzyme metabolism]
Probab=22.19 E-value=55 Score=13.49 Aligned_cols=160 Identities=16% Similarity=0.101 Sum_probs=79.7
Q ss_pred CCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 22712457760378999988761068999997423557521112374202221001233463011122135678999999
Q gi|254780537|r 61 QVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENI 140 (294)
Q Consensus 61 e~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I 140 (294)
-+|++-.+.|++||+++ |.+.-+.. +...-+ .....|..+.....+....
T Consensus 14 ~Lt~~A~~~I~~A~vV~----G~kr~L~~-~~~~~~-------------------------~~~~~~~~~~~~~~l~~i~ 63 (210)
T COG2241 14 GLTLAAIEAIRRADVVA----GSKRHLEL-LPPLIK-------------------------AERIIWPYPFDAESLEEIL 63 (210)
T ss_pred HHCHHHHHHHHHCCEEE----ECHHHHHH-HHCCCC-------------------------CEEEEECCCCCHHHHHHHH
T ss_conf 30599999997398875----02879976-023244-------------------------3189824654168999999
Q ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCC
Q ss_conf 999-------8643188899999989986301455337899886307844736998266521457752972887226886
Q gi|254780537|r 141 RKA-------LTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINS 213 (294)
Q Consensus 141 ~~~-------L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~ 213 (294)
... |..=||--- .+....+..++ .....++-.=.+++|.+.+.|+...-..-.+-
T Consensus 64 ~~~~g~~v~VLasGDP~f~---------------G~g~~l~~~~~---~~~v~iIPgiSS~q~a~ARlg~~~~~~~~isl 125 (210)
T COG2241 64 AERKGRDVVVLASGDPLFS---------------GVGRLLRRKFS---CEEVEIIPGISSVQLAAARLGWPLQDTEVISL 125 (210)
T ss_pred HHHCCCCEEEEECCCCCHH---------------HHHHHHHHHCC---CCCEEEECCHHHHHHHHHHHCCCHHHEEEEEE
T ss_conf 8737997699963896035---------------36899998647---66259922811999999984998677689983
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHH-HHHHHHHHHCCCEEEEEECCCCCCCCC
Q ss_conf 400078999999976201697189982789979-999999982993444320123787778
Q gi|254780537|r 214 DSERSPSMMRHAINQMRSHKIKFIFSESTNSDQ-PAKQVAYETNASYGGVLYVDSLSKPDG 273 (294)
Q Consensus 214 ~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~-~~~~ia~e~~~~~~~~~~~d~l~~~~~ 273 (294)
. .+....++..+..+..-+|+.+..+.++ .++.| .+.|..-..+..+|.|+.+++
T Consensus 126 H----gr~~~~l~~~~~~~~~~vil~~~~~~P~~IA~~L-~~~G~~~~~~~VlE~L~~~~E 181 (210)
T COG2241 126 H----GRPVELLRPLLENGRRLVILTPDDFGPAEIAKLL-TENGIGDSRVTVLENLGYPDE 181 (210)
T ss_pred C----CCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHH-HHCCCCCCEEEEECCCCCCCH
T ss_conf 3----8878889998717923999678778989999999-967998845998730399735
No 297
>pfam04273 DUF442 Putative phosphatase (DUF442). Although this domain is uncharacterized it seems likely that it performs a phosphatase function.
Probab=22.09 E-value=55 Score=13.47 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=19.2
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEEC-------CCCHHHHHHHHHHHCCCEE
Q ss_conf 000789999999762016971899827-------8997999999998299344
Q gi|254780537|r 215 SERSPSMMRHAINQMRSHKIKFIFSES-------TNSDQPAKQVAYETNASYG 260 (294)
Q Consensus 215 ~eps~~~l~~~~~~ik~~~v~~if~e~-------~~~~~~~~~ia~e~~~~~~ 260 (294)
.+|++.++.++ ++.|++.|+..- +.+....+..+++.|++..
T Consensus 13 ~Qi~~~di~~l----a~~GfktIInnRPd~E~~~qp~~~~~~~~a~~~Gl~y~ 61 (110)
T pfam04273 13 PQIQPDDIAAA----ARAGFRSVINNRPDGEEPGQPSNAAEQAAARAAGLAYR 61 (110)
T ss_pred CCCCHHHHHHH----HHCCCCEEEECCCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 99899999999----98598388533888777899888999999998399799
No 298
>PRK10027 cryptic adenine deaminase; Provisional
Probab=22.01 E-value=40 Score=14.44 Aligned_cols=47 Identities=4% Similarity=-0.103 Sum_probs=21.5
Q ss_pred HHHHHHHCCCEEEEEEEECCCCC------CCCCCCCHHHHHHHCCCCEEEEEC
Q ss_conf 99999851891489996268898------012022712457760378999988
Q gi|254780537|r 34 GDITQNIAKDLVTVTTLVEAGND------SHSYQVTSADAIKIQNADLILCNG 80 (294)
Q Consensus 34 ~~iv~~I~gd~v~V~~li~~g~d------pH~ye~tp~d~~~i~~Adliv~~G 80 (294)
.++.+.-.+-..++...+|+-.- --....++.+++.+-+-+-++..|
T Consensus 132 ~~ml~~~~~~pl~~~~~~pScVPat~~~E~~Ga~~~~~~~~~~l~~~~V~gLg 184 (588)
T PRK10027 132 AWFARCAEQARQNQYLQVSSCVPALEGCDVNGASFTLEQMLAWRDHPQVTGLA 184 (588)
T ss_pred HHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCEEE
T ss_conf 99998502077405754565688888543577827999999986389843567
No 299
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=22.01 E-value=55 Score=13.46 Aligned_cols=40 Identities=18% Similarity=0.170 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
Q ss_conf 1112213567899999999986431888999999899863014
Q gi|254780537|r 124 PHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKI 166 (294)
Q Consensus 124 pH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l 166 (294)
|....|+..+.+..+.+.. ++..+|+.+ |...++.....+
T Consensus 122 ~~~~rDq~~~~~A~~~f~~-~i~~yP~S~--ya~dA~~~i~~l 161 (235)
T TIGR03302 122 DDSDRDQTAAREAFEAFQE-LIRRYPNSE--YAPDAKKRMDYL 161 (235)
T ss_pred CCCCCCHHHHHHHHHHHHH-HHHHCCCCH--HHHHHHHHHHHH
T ss_conf 6544580899999999999-998889965--799999999999
No 300
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457; InterPro: IPR006354 These sequences are all members of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences are all from the Gram-positive (low-GC) bacteria..
Probab=22.00 E-value=55 Score=13.46 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HH-HHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH
Q ss_conf 11122135678999999999864-31-888-9999998998630145533789988630784473699826652145775
Q gi|254780537|r 124 PHAWMSLTNAMIYIENIRKALTA-LD-PSN-AKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAED 200 (294)
Q Consensus 124 pH~Wldp~~~~~~a~~I~~~L~~-~d-P~~-~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~ 200 (294)
|+++. .+|..+-=+.+++.|.. .| |.- ..-| ...+.-. .-+.......+.||+......--.++
T Consensus 35 pYLFV-TNNstrtPe~Va~~L~snfdipat~e~Vf-------T~smAta-----~y~~~~k~~~~vyViGEeGl~eaike 101 (251)
T TIGR01457 35 PYLFV-TNNSTRTPESVAELLASNFDIPATKEQVF-------TASMATA-----DYLADLKKEKSVYVIGEEGLKEAIKE 101 (251)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHCCCCCCCCHHH-------HHHHHHH-----HHHHHCCCCEEEEEECCHHHHHHHHH
T ss_conf 63687-27888881799999875168999721023-------4478999-----99983288028999823678999986
Q ss_pred CCCEEE-------EECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC-----------CHHHHHHHHHHHCCCEE
Q ss_conf 297288-------7226886400078999999976201697189982789-----------97999999998299344
Q gi|254780537|r 201 FGFKSL-------YLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN-----------SDQPAKQVAYETNASYG 260 (294)
Q Consensus 201 yGl~~~-------~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~-----------~~~~~~~ia~e~~~~~~ 260 (294)
-|+-.- .+.|+ +...+=..++...-.|++ |.++|-+++-. +..++..|+-.|+++-+
T Consensus 102 ~G~~~~e~E~pdyVVvGl--Dr~i~YEKfA~a~lair~-GA~Fi~TNgD~aiPTErGLlPGnGSL~~vl~v~TgVkPv 176 (251)
T TIGR01457 102 AGLVVDEDEKPDYVVVGL--DRAIDYEKFAKAALAIRK-GAKFISTNGDLAIPTERGLLPGNGSLIAVLEVATGVKPV 176 (251)
T ss_pred CCCEECCCCCCCEEEEEC--CCCCCHHHHHHHHHHHHC-CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEE
T ss_conf 687323687756689812--542248889899999876-871642388876762357888507899998773572148
No 301
>PRK09304 arginine exporter protein; Provisional
Probab=21.91 E-value=28 Score=15.41 Aligned_cols=12 Identities=25% Similarity=0.473 Sum_probs=8.6
Q ss_pred CCHHHHHHHHHH
Q ss_conf 301112213567
Q gi|254780537|r 122 PNPHAWMSLTNA 133 (294)
Q Consensus 122 ~dpH~Wldp~~~ 133 (294)
-|||+|+|..-.
T Consensus 107 LNPHvyLDTv~l 118 (197)
T PRK09304 107 LNPHVYLDTFVV 118 (197)
T ss_pred CCCHHHHHHHHH
T ss_conf 181588889999
No 302
>PRK13117 consensus
Probab=21.84 E-value=56 Score=13.44 Aligned_cols=36 Identities=19% Similarity=0.179 Sum_probs=20.1
Q ss_pred HHHHHHHHHCCCCCEEEE-EECCCCHHHHHHHHHHHC
Q ss_conf 999999762016971899-827899799999999829
Q gi|254780537|r 221 MMRHAINQMRSHKIKFIF-SESTNSDQPAKQVAYETN 256 (294)
Q Consensus 221 ~l~~~~~~ik~~~v~~if-~e~~~~~~~~~~ia~e~~ 256 (294)
+-.++.+..+++++..|+ .-|..+.+.++.+++...
T Consensus 135 E~~~~~~~~~~~gl~~I~lv~Ptt~~~Ri~~i~~~a~ 171 (268)
T PRK13117 135 ESAPFRQAAKKHGIAPIFICPPNADDDTLRQIASLGR 171 (268)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 8589999998679837998479999999999997479
No 303
>PRK13121 consensus
Probab=21.63 E-value=56 Score=13.41 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHHHHHHHHHHHCCHHHH------HHHHHHHHHCCCCCCCEEEEECCC
Q ss_conf 011122135678999999-99986--431888999999899863014553------378998863078447369982665
Q gi|254780537|r 123 NPHAWMSLTNAMIYIENI-RKALT--ALDPSNAKKYELNAREYSEKIRNS------ILPLKTRIEKVDPEKRWFVTSEGC 193 (294)
Q Consensus 123 dpH~Wldp~~~~~~a~~I-~~~L~--~~dP~~~~~y~~N~~~~~~~l~~l------~~~~~~~~~~~p~~~~~~v~~H~a 193 (294)
||=+.+..++....+... .+.++ .+-|+..+.|.+-++++--.+-.| +..++...+ ....
T Consensus 104 N~i~~yG~e~F~~~~~~aGvdGlIipDLP~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~-----------~~~g 172 (265)
T PRK13121 104 NPIERMGYDAFAAAARAAGVDGVLVVDYPPEECEEFAAKMRAAGIDPIFLLAPTSTDERIAAVAR-----------VASG 172 (265)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHH-----------HCCC
T ss_conf 59999719999999987298734348999899999999998659966899589998999999996-----------2898
Q ss_pred CHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 214577529728872268864000789999999762016-9718998278997999999998299344432012378777
Q gi|254780537|r 194 LVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-KIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPD 272 (294)
Q Consensus 194 f~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~ 272 (294)
|-|..-..|.. .....-..++.+.++.+|+. ++++..-=.-.+++.++.+++-...=+++--.+.-+.+.
T Consensus 173 FiY~Vs~~GvT--------G~~~~~~~~~~~~i~~ik~~t~~Pv~vGFGIs~~e~~~~v~~~ADGvIVGSaiV~~i~~~- 243 (265)
T PRK13121 173 YVYYVSLKGVT--------GAATLDVSSVAAKLPAIRSHVPLPVGVGFGIRDAATARAVAEVADAVVIGSRLVQLIEQA- 243 (265)
T ss_pred EEEEEECCCCC--------CCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCEEEECHHHHHHHHHC-
T ss_conf 09997555566--------777566288999999998547998599768898999999981199999848999999857-
Q ss_pred CCCCCHHHHHHHHHHHHHHHC
Q ss_conf 886899999999999998620
Q gi|254780537|r 273 GPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 273 ~~~~~Y~~~m~~N~~~l~~aL 293 (294)
..+.-++-+..=+..|++||
T Consensus 244 -~~e~~~~~v~~fi~~lk~al 263 (265)
T PRK13121 244 -PPERAAAALTDFLAELRAAL 263 (265)
T ss_pred -CHHHHHHHHHHHHHHHHHHH
T ss_conf -85768999999999999986
No 304
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=21.60 E-value=56 Score=13.41 Aligned_cols=49 Identities=12% Similarity=0.101 Sum_probs=26.5
Q ss_pred CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 73699826652145775297288722688640007899999997620169718998
Q gi|254780537|r 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFS 239 (294)
Q Consensus 184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~ 239 (294)
+|.+.--||-=.||.+.++-. .+..+--.+.+++++...++++|+++++
T Consensus 29 ~RavLLIhDMQ~YFv~~~~~~-------~~~~~~li~Ni~~Lr~~~~~~giPVvyT 77 (218)
T COG1535 29 KRAVLLIHDMQNYFVSPWGEN-------CPLMEQLIANIAKLRIWCKQAGIPVVYT 77 (218)
T ss_pred CCCEEEEEHHHHHHCCCCCCC-------CCCHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 633122326578524878877-------8648999999999999999829967998
No 305
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=21.57 E-value=56 Score=13.40 Aligned_cols=57 Identities=18% Similarity=0.255 Sum_probs=30.3
Q ss_pred EEEEECHHHHHHHHHHCCCEEE------EEEEECCCCCCCC---CCCCHHHHHHHCCCCEEEEECC
Q ss_conf 8999752899999985189148------9996268898012---0227124577603789999887
Q gi|254780537|r 25 VVLSSFSIIGDITQNIAKDLVT------VTTLVEAGNDSHS---YQVTSADAIKIQNADLILCNGL 81 (294)
Q Consensus 25 ~Vv~s~~pl~~iv~~I~gd~v~------V~~li~~g~dpH~---ye~tp~d~~~i~~Adliv~~G~ 81 (294)
..+-+...-..+.++++-+-|- +...+..|.|-|- ==.|+...+.|+.+.++..+|.
T Consensus 223 n~es~~~va~Ii~~~~~~~AVaiTd~e~ilA~vg~g~dhhi~g~~i~s~~t~~ai~~g~vv~~~~~ 288 (557)
T COG3275 223 NEESLMKVAEIIYEELGAGAVAITDREKLLAFVGIGDDHHIPGKPIISSLTRKAIKTGEVVYADGN 288 (557)
T ss_pred CHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCCCCCCCEEECHHHHHHHHHCCEEEECCH
T ss_conf 766599999999998488848834778788761343014578871212779999862877897150
No 306
>KOG4358 consensus
Probab=21.32 E-value=55 Score=13.48 Aligned_cols=46 Identities=22% Similarity=0.267 Sum_probs=26.6
Q ss_pred CEEEEECHH-H-HHHH--------HHHCCCEEEEEEEECCCCCCCCCCCCHHHHHH
Q ss_conf 289997528-9-9999--------98518914899962688980120227124577
Q gi|254780537|r 24 KVVLSSFSI-I-GDIT--------QNIAKDLVTVTTLVEAGNDSHSYQVTSADAIK 69 (294)
Q Consensus 24 ~~Vv~s~~p-l-~~iv--------~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~ 69 (294)
++|..+..+ + +.++ +.=-.-++||.+|-.||..||+|..-..+--.
T Consensus 301 p~v~~~n~~~v~k~~AlHdl~l~~~~~~~rR~eVFsLsqPG~hP~nW~ais~~Cl~ 356 (584)
T KOG4358 301 PKVLNSNPPPIIKYLALHDLMLLSQYSPSRRQEVFSLSQPGGHPHNWTAISRECLN 356 (584)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 36335683899999999999998601830220101305899998543776899998
No 307
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD; InterPro: IPR014104 Members of this family are encoded by slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. (strain PCC 6803), and close homologues (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyses the first step that is committed to myxoxanthophyll..
Probab=21.22 E-value=43 Score=14.22 Aligned_cols=24 Identities=4% Similarity=0.139 Sum_probs=12.7
Q ss_pred CCCCHHHHHH-HHHHHCCCCCEEEE
Q ss_conf 0007899999-99762016971899
Q gi|254780537|r 215 SERSPSMMRH-AINQMRSHKIKFIF 238 (294)
Q Consensus 215 ~eps~~~l~~-~~~~ik~~~v~~if 238 (294)
=+-|.+-|.. +.+.++++|...++
T Consensus 227 L~GSMQ~LSD~L~~al~~~GG~l~~ 251 (499)
T TIGR02733 227 LHGSMQVLSDRLVEALKRDGGRLLT 251 (499)
T ss_pred CCCCHHHHHHHHHHHHHHCCCEEEE
T ss_conf 1320235789999999867987986
No 308
>TIGR03519 Bac_Flav_fam_1 Bacteroidetes-specific putative membrane protein. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.
Probab=21.18 E-value=50 Score=13.76 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=9.2
Q ss_pred CHHHHHHHHHHHHHCC
Q ss_conf 9269999999998604
Q gi|254780537|r 1 MLRYFICLLFSYIPMS 16 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~ 16 (294)
|||.++++++.+++..
T Consensus 1 Mkki~l~~~~~~~~~~ 16 (292)
T TIGR03519 1 MKKILLLLLLLLLLTV 16 (292)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 9605788999999987
No 309
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=21.09 E-value=58 Score=13.34 Aligned_cols=20 Identities=15% Similarity=0.491 Sum_probs=8.7
Q ss_pred CHHHHH-HHHHHHHHCCCCCC
Q ss_conf 926999-99999986046433
Q gi|254780537|r 1 MLRYFI-CLLFSYIPMSASAT 20 (294)
Q Consensus 1 M~r~~~-~l~~~~~~~~~~~~ 20 (294)
|||.++ .++++++++++|.+
T Consensus 1 m~k~~~~~~l~~~l~lsgC~s 21 (160)
T PRK09967 1 MIKHLVAPLIFTSLILTGCQS 21 (160)
T ss_pred CHHHHHHHHHHHHHHHHHCCC
T ss_conf 907899999999999984589
No 310
>pfam03932 CutC CutC family. Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length are found in both eukaryotes and bacteria.
Probab=21.07 E-value=58 Score=13.34 Aligned_cols=70 Identities=10% Similarity=0.046 Sum_probs=43.7
Q ss_pred EEECCCCHHHH---------HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 98266521457---------752972887226886400078999999976201697189982789979999999982993
Q gi|254780537|r 188 VTSEGCLVYLA---------EDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNAS 258 (294)
Q Consensus 188 v~~H~af~Y~~---------~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~ 258 (294)
+|+|-||++.. ..+|++-+-..|-.+..+-....|+++++..+. ++. |..-...+.+-++.+.+.+|++
T Consensus 117 ~TFHRAfD~~~d~~~al~~L~~lG~~rILTSGg~~~a~~g~~~L~~l~~~a~~-~i~-Im~GgGI~~~N~~~l~~~~g~~ 194 (202)
T pfam03932 117 VTFHRAFDMCPDPEEALEQLIELGCERVLTSGGPLSALEGLEKLASLVAQAGG-RIS-IMAGAGVNAENIAELRQLTGVA 194 (202)
T ss_pred EEEECHHHCCCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHCCC-CEE-EEECCCCCHHHHHHHHHHHCCC
T ss_conf 59862043059999999999975998787579978766749999999996599-849-9957998999999999971994
Q ss_pred E
Q ss_conf 4
Q gi|254780537|r 259 Y 259 (294)
Q Consensus 259 ~ 259 (294)
.
T Consensus 195 ~ 195 (202)
T pfam03932 195 E 195 (202)
T ss_pred E
T ss_conf 8
No 311
>KOG2183 consensus
Probab=21.02 E-value=58 Score=13.33 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=9.2
Q ss_pred CCEEEEEC--CCCCHH
Q ss_conf 78999988--761068
Q gi|254780537|r 73 ADLILCNG--LHLEET 86 (294)
Q Consensus 73 Adliv~~G--~~~E~~ 86 (294)
.-++||.| .++|.+
T Consensus 81 gPIffYtGNEGdie~F 96 (492)
T KOG2183 81 GPIFFYTGNEGDIEWF 96 (492)
T ss_pred CCEEEEECCCCCHHHH
T ss_conf 7669994785218888
No 312
>TIGR01263 4HPPD 4-hydroxyphenylpyruvate dioxygenase; InterPro: IPR005956 4-hydroxyphenylpyruvate dioxygenase (1.13.11.27 from EC) oxidizes 4-hydroxyphenylpyruvate, a tyrosine and phenylalanine catabolite, to homogentisate. Homogentisate can undergo a further non-enzymatic oxidation and polymerization into brown pigments that protect some bacterial species from light. A similar process occurs spontaneously in blood and is hemolytic . In some bacterial species, this enzyme has been studied as a hemolysin.; GO: 0003868 4-hydroxyphenylpyruvate dioxygenase activity, 0009072 aromatic amino acid family metabolic process.
Probab=20.93 E-value=48 Score=13.89 Aligned_cols=69 Identities=23% Similarity=0.314 Sum_probs=43.4
Q ss_pred CCCC-CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCC-EEEEEECCCCCCCCCCCCCHHHHHHHHHHH-H
Q ss_conf 6400-078999999976201697189982789979999999982993-444320123787778868999999999999-9
Q gi|254780537|r 213 SDSE-RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNAS-YGGVLYVDSLSKPDGPAPTYLDLLRFSLTK-I 289 (294)
Q Consensus 213 ~~~e-ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~-~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~-l 289 (294)
|... -.+++|.|.++.=.-.||+-|- ..+..+++++. .+..+ . ++-|+++ .| ++|.++++.-+.. +
T Consensus 232 P~~~~k~~SQI~EfL~~y~G~GvQHiA---l~t~DI~~tV~-~Lr~rCl-Gv~FL~~--~P----~~YYd~l~~Rv~~~~ 300 (379)
T TIGR01263 232 PASGRKDKSQIEEFLEFYNGAGVQHIA---LNTDDIVRTVR-ALRARCL-GVEFLDS--TP----DTYYDNLEERVGGLH 300 (379)
T ss_pred CCCCCCCCCHHHHHHHHCCCCCEEEEE---ECCHHHHHHHH-HHHHHHC-CCEECCC--CC----HHHHHHHHHHCCCHH
T ss_conf 887888886479999860889369998---15057999999-9776414-4120488--97----167899987511023
Q ss_pred HHH
Q ss_conf 862
Q gi|254780537|r 290 VDT 292 (294)
Q Consensus 290 ~~a 292 (294)
.+-
T Consensus 301 ~Ed 303 (379)
T TIGR01263 301 KED 303 (379)
T ss_pred HHH
T ss_conf 202
No 313
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=20.91 E-value=58 Score=13.31 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=37.9
Q ss_pred CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 972887226886400078999999976201697189982789979999999982993
Q gi|254780537|r 202 GFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNAS 258 (294)
Q Consensus 202 Gl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~ 258 (294)
+.+..++..+.. |--.+.++.++.+++.||+++.. +..++..++.||++.|+.
T Consensus 438 d~~~lG~i~L~D---~iRp~a~eaI~~Lr~~GI~vvMI-TGDn~~TA~aIA~elGID 490 (684)
T PRK01122 438 GNRVLGVIYLKD---IVKPGIKERFAQLRKMGIKTVMI-TGDNPLTAAAIAAEAGVD 490 (684)
T ss_pred CCEEEEEEEECC---CCCHHHHHHHHHHHHCCCEEEEE-CCCCHHHHHHHHHHHCCH
T ss_conf 999999997268---89754999999999879929999-898969999999984956
No 314
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=20.85 E-value=58 Score=13.31 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=38.8
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHH
Q ss_conf 999999762016971899827899799999999829934443201237877788689999999
Q gi|254780537|r 221 MMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLR 283 (294)
Q Consensus 221 ~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~ 283 (294)
.=..+++.++++++++...+-..++...+.+.+.+|.+....++.+.- -=++|-++++
T Consensus 12 ~C~~ak~~L~~~~i~y~e~di~~~~~~~~~l~~~~g~~tvPqIfi~g~-----~IGG~~~l~~ 69 (72)
T cd02066 12 YCKRAKRLLESLGIEFEEIDILEDGELREELKELSGWPTVPQIFINGE-----FIGGYDDLKA 69 (72)
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHCCCCCCEEEECCE-----EECCHHHHHH
T ss_conf 699999999956997789980598889999999849988995999998-----9816899998
No 315
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase; InterPro: IPR011790 Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases found in archaea. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases .; GO: 0008443 phosphofructokinase activity, 0006000 fructose metabolic process, 0006096 glycolysis, 0005737 cytoplasm.
Probab=20.84 E-value=50 Score=13.76 Aligned_cols=33 Identities=12% Similarity=-0.072 Sum_probs=28.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 123346301112213567899999999986431
Q gi|254780537|r 116 TSVDSEPNPHAWMSLTNAMIYIENIRKALTALD 148 (294)
Q Consensus 116 ~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~d 148 (294)
..-|...|.|+-+|-.+|.-+|-.|++-|+.++
T Consensus 72 ~~lH~Wfd~~~~yD~eRmGGQAGIisNLL~~L~ 104 (466)
T TIGR02045 72 EELHEWFDEHLKYDEERMGGQAGIISNLLARLQ 104 (466)
T ss_pred HHHHHHHHHHCCCCCHHHCCHHHHHHHHHCCCC
T ss_conf 578999987517650230751788998750387
No 316
>pfam07269 consensus
Probab=20.67 E-value=59 Score=13.28 Aligned_cols=16 Identities=13% Similarity=0.210 Sum_probs=10.2
Q ss_pred CHHHHHHHHHHHHHCC
Q ss_conf 9269999999998604
Q gi|254780537|r 1 MLRYFICLLFSYIPMS 16 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~ 16 (294)
||+.++++++.+..|.
T Consensus 1 MKy~ll~l~l~LAgC~ 16 (55)
T pfam07269 1 MKYCLLLLILALAGCQ 16 (55)
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 9014999999987511
No 317
>pfam05643 DUF799 Putative bacterial lipoprotein (DUF799). This family consists of several bacterial proteins of unknown function. Some of the family members are described as putative lipoproteins.
Probab=20.56 E-value=59 Score=13.27 Aligned_cols=80 Identities=13% Similarity=0.145 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCC-----------CCCE-------------EEEECHHHHHHHHHHC--CCEEEEEE----E
Q ss_conf 926999999999860464335-----------8828-------------9997528999999851--89148999----6
Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATT-----------QKKV-------------VLSSFSIIGDITQNIA--KDLVTVTT----L 50 (294)
Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~-----------~~~~-------------Vv~s~~pl~~iv~~I~--gd~v~V~~----l 50 (294)
||+.|+++...+++.+|+... .+|+ |-++.+.+..+..-++ |=+|-... +
T Consensus 1 mK~lil~l~~~l~L~gCa~~~~~~~DYsaf~~skP~SILVlPpvN~S~dV~A~~~~ls~~t~PLAE~GYYVfPVavV~et 80 (215)
T pfam05643 1 MKPLILGLAAVLALSACQVQKAPDFDYTSFKESKPASILVVPPLNESPDVNGTWGMLASTAAPLSEAGYYVFPAAVVEET 80 (215)
T ss_pred CHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCEEEEECCCCCCCCCCCCHHEEEEEHHHHHHCCEEECCHHHHHHH
T ss_conf 93149999999998623489998465456750699559985788998653663231320010053286376259999999
Q ss_pred E-CCC-CCCCCC-CCCHHHHHHHCCCCEEEEEC
Q ss_conf 2-688-980120-22712457760378999988
Q gi|254780537|r 51 V-EAG-NDSHSY-QVTSADAIKIQNADLILCNG 80 (294)
Q Consensus 51 i-~~g-~dpH~y-e~tp~d~~~i~~Adliv~~G 80 (294)
+ ..| .||.+. ...|+-.+.|=.||.++|.-
T Consensus 81 fk~nGl~~a~~i~~v~~~Kl~eiFGADAvLYvt 113 (215)
T pfam05643 81 FKQNGLTNAADIHAVRPEKLHQIFGNDAVLYIT 113 (215)
T ss_pred HHHCCCCCHHHHHCCCHHHHHHHHCCCEEEEEE
T ss_conf 997599998997359989999873877689987
No 318
>PRK05589 peptide chain release factor 2; Provisional
Probab=20.40 E-value=60 Score=13.24 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=7.5
Q ss_pred EEECCCCHHHHHHCCCE
Q ss_conf 98266521457752972
Q gi|254780537|r 188 VTSEGCLVYLAEDFGFK 204 (294)
Q Consensus 188 v~~H~af~Y~~~~yGl~ 204 (294)
|....||+||--+-|.+
T Consensus 142 I~G~~ayg~Lk~E~GvH 158 (325)
T PRK05589 142 ITGEFAYGYLKAEKGIH 158 (325)
T ss_pred EECCHHHHHHHCCCCCC
T ss_conf 85512565542157751
No 319
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; InterPro: IPR006256 This group of sequences are a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and percent identity (UPGMA) trees. Members contain two or three copies of the lipoyl-binding domain. Escherichia coli AceF is included in this set while mitochondrial and some other bacterial forms are excluded. dihydrolipoyllysine-residue acetyltransferase E2 component of pyruvate dehydrogenase complex; GO: 0004742 dihydrolipoyllysine-residue acetyltransferase activity, 0006096 glycolysis, 0045254 pyruvate dehydrogenase complex.
Probab=20.32 E-value=60 Score=13.23 Aligned_cols=52 Identities=13% Similarity=0.089 Sum_probs=36.9
Q ss_pred CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 7369982665214577529728872268864000789999999762016971
Q gi|254780537|r 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIK 235 (294)
Q Consensus 184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~ 235 (294)
+|.+|-.-|+..-|+|+||++...+-+.......+-.|++.+.+.---.+|+
T Consensus 337 GrPvv~A~P~vR~LARe~Gvdl~~vkGtg~~GRI~~EDVq~~v~~~~GtGiP 388 (655)
T TIGR01348 337 GRPVVHAAPAVRRLAREFGVDLSKVKGTGKKGRILREDVQKFVKEAVGTGIP 388 (655)
T ss_pred CCCCEECCHHHHHHHHHHCCEEEEEECCCCCCCCCHHHHHHHHCCCCCCCCC
T ss_conf 7230017628899988827011110136888862535799980643367875
No 320
>KOG1538 consensus
Probab=20.27 E-value=30 Score=15.27 Aligned_cols=98 Identities=8% Similarity=0.039 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCC
Q ss_conf 11122135678999999999864318889999998998630145533789988630784473699826652145775297
Q gi|254780537|r 124 PHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGF 203 (294)
Q Consensus 124 pH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl 203 (294)
.|-|+|. +-.|+..|...+-+.-....+|+++..+ -.|..++-.++... +.+|-.|-.-+.|-+.|.+
T Consensus 728 d~gW~d~------lidI~rkld~~ere~l~~~a~ylk~l~~--~gLAaeIF~k~gD~----ksiVqlHve~~~W~eAFal 795 (1081)
T KOG1538 728 DHGWVDM------LIDIARKLDKAEREPLLLCATYLKKLDS--PGLAAEIFLKMGDL----KSLVQLHVETQRWDEAFAL 795 (1081)
T ss_pred HCCHHHH------HHHHHHHCCHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHCCH----HHHHHHEEECCCCHHHHHH
T ss_conf 0569999------9999754255566689999999864035--34389999974227----8776534412665177777
Q ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 288722688640007899999997620169
Q gi|254780537|r 204 KSLYLWPINSDSERSPSMMRHAINQMRSHK 233 (294)
Q Consensus 204 ~~~~~~~~~~~~eps~~~l~~~~~~ik~~~ 233 (294)
-.....-...---|-++=+++--.+++.++
T Consensus 796 Ae~hPe~~~dVy~pyaqwLAE~DrFeEAqk 825 (1081)
T KOG1538 796 AEKHPEFKDDVYMPYAQWLAENDRFEEAQK 825 (1081)
T ss_pred HHHCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 664822134422336766544246899999
No 321
>PRK13238 tnaA tryptophanase; Provisional
Probab=20.13 E-value=60 Score=13.21 Aligned_cols=134 Identities=12% Similarity=0.061 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHCCCC-CCCE-------EEEEC
Q ss_conf 21356789999999998-------643188899999989986301-45533789988630784-4736-------99826
Q gi|254780537|r 128 MSLTNAMIYIENIRKAL-------TALDPSNAKKYELNAREYSEK-IRNSILPLKTRIEKVDP-EKRW-------FVTSE 191 (294)
Q Consensus 128 ldp~~~~~~a~~I~~~L-------~~~dP~~~~~y~~N~~~~~~~-l~~l~~~~~~~~~~~p~-~~~~-------~v~~H 191 (294)
.|..|.+.+ ..|++.. +...-+|+-.+++|-..|..+ +.++.+++-.-...+-- .++. +++..
T Consensus 195 VSm~Nir~v-~~la~~~~ip~~lDaaRfaENAyFIk~RE~gY~d~si~eI~rEmfs~aDg~tmSaKKD~~vniGG~l~~~ 273 (461)
T PRK13238 195 VSMANLRAV-YEIAKKYGIPVVLDAARFAENAYFIKQREPGYKDKSIKEITREMFSYADGLTMSAKKDAMVNIGGLLCFK 273 (461)
T ss_pred CCHHHHHHH-HHHHHHCCCCEEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHEEEEEECCCCEECCCCEEEEC
T ss_conf 468999999-9999982995998656676645788732531257999999999984523799983301210442289966
Q ss_pred CCCHHHH--HH-----CCCEEEE----------ECCCCCCCC-----CCHHHHHHHHHHHCCCCCEEE--------EEE-
Q ss_conf 6521457--75-----2972887----------226886400-----078999999976201697189--------982-
Q gi|254780537|r 192 GCLVYLA--ED-----FGFKSLY----------LWPINSDSE-----RSPSMMRHAINQMRSHKIKFI--------FSE- 240 (294)
Q Consensus 192 ~af~Y~~--~~-----yGl~~~~----------~~~~~~~~e-----ps~~~l~~~~~~ik~~~v~~i--------f~e- 240 (294)
+--..|. +. .|+...+ .+|+.+..+ -.+.+++-+.+.+++.||+++ |.+
T Consensus 274 d~~~l~~~~~~~~i~~EGf~TYGGlaGRDmeAlAvGL~E~~d~dyl~~Ri~qv~yLg~~L~~~GVPvv~P~GGHAv~iDA 353 (461)
T PRK13238 274 DDSDLYTKCRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDEDYLAYRIAQVEYLGEGLEEAGVPVVTPAGGHAVFVDA 353 (461)
T ss_pred CHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCEEEEEEH
T ss_conf 75999999874424205875668833877999973578760779999779999999999997799705679851899746
Q ss_pred ----C-----CCC-HHHHHHHHHHHCCCEEEE
Q ss_conf ----7-----899-799999999829934443
Q gi|254780537|r 241 ----S-----TNS-DQPAKQVAYETNASYGGV 262 (294)
Q Consensus 241 ----~-----~~~-~~~~~~ia~e~~~~~~~~ 262 (294)
| +++ ...+..|=.+.|++.+++
T Consensus 354 ~~fLPhip~~qfPa~aLa~eLY~~~GIR~vEi 385 (461)
T PRK13238 354 GKFLPHIPAEQFPAQALACELYLEAGIRAVEI 385 (461)
T ss_pred HHHCCCCCHHHCCHHHHHHHHHHHCCCCEEEE
T ss_conf 78567998144818999999999729557875
No 322
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=20.08 E-value=60 Score=13.20 Aligned_cols=16 Identities=6% Similarity=0.084 Sum_probs=5.3
Q ss_pred HHHHCCHHHHHHHHHH
Q ss_conf 9863014553378998
Q gi|254780537|r 160 REYSEKIRNSILPLKT 175 (294)
Q Consensus 160 ~~~~~~l~~l~~~~~~ 175 (294)
..+.++|.+...+...
T Consensus 79 ~~~~~kLe~Ak~eA~~ 94 (170)
T PRK08475 79 KDALKKLEEAKEKAEL 94 (170)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 323
>pfam03255 ACCA Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit. Acetyl co-enzyme A carboxylase carboxyltransferase is composed of an alpha and beta subunit.
Probab=20.07 E-value=37 Score=14.66 Aligned_cols=100 Identities=4% Similarity=-0.105 Sum_probs=45.0
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99989986301455337899886307844736998266521457752972887226886400078999999976201697
Q gi|254780537|r 155 YELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKI 234 (294)
Q Consensus 155 y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v 234 (294)
..+....+.++++++..++- +.+.+.+++-|+=||.=.|..+.-..-.-....+ +|..--..|-+=+-...+=++.
T Consensus 30 ~~~eI~~Le~k~~~~~~~iy---s~LtpWQkVqvARHP~RP~t~DYI~~if~dF~EL-hGDR~f~DD~AIigG~a~i~~~ 105 (145)
T pfam03255 30 VSDEIHRLEKKLDKLKREIY---SNLTPWQRVQLARHPDRPTTLDYIENILDDFIEL-HGDRAGADDPAIVGGLGRIDGR 105 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHCCCCCCHHHHHHHHCCCCEEE-CCCCCCCCCCCCEEEEEEECCE
T ss_conf 89999999999999999999---6799999999874878886999999860667763-3885666697405778899996
Q ss_pred EEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf 189982789979999999982993
Q gi|254780537|r 235 KFIFSESTNSDQPAKQVAYETNAS 258 (294)
Q Consensus 235 ~~if~e~~~~~~~~~~ia~e~~~~ 258 (294)
+|++...+-...+-+.|.+..|.+
T Consensus 106 ~v~viG~qKG~~t~e~i~rNFGm~ 129 (145)
T pfam03255 106 PVVVIGHQKGRDTKENLLRNFGMP 129 (145)
T ss_pred EEEEEEEECCCCHHHHHHHCCCCC
T ss_conf 899998725887688888628999
No 324
>pfam05913 DUF871 Bacterial protein of unknown function (DUF871). This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown.
Probab=20.06 E-value=61 Score=13.20 Aligned_cols=74 Identities=12% Similarity=0.106 Sum_probs=44.4
Q ss_pred EEEEECCCCH---------------HHHHHCCCEEEEECCCC-------CCCCCCHHH------HHHHHHHHCCCCCEEE
Q ss_conf 6998266521---------------45775297288722688-------640007899------9999976201697189
Q gi|254780537|r 186 WFVTSEGCLV---------------YLAEDFGFKSLYLWPIN-------SDSERSPSM------MRHAINQMRSHKIKFI 237 (294)
Q Consensus 186 ~~v~~H~af~---------------Y~~~~yGl~~~~~~~~~-------~~~eps~~~------l~~~~~~ik~~~v~~i 237 (294)
.+.+.|+=|. -+.++||++..+..... .++-||... ...+........|..|
T Consensus 137 ~l~a~HNfYPr~~TGLs~~~f~~~n~~~k~~gi~~~AFI~g~~~~rGPl~eGLPTLE~HR~~~~~~aa~~L~~~~~iD~V 216 (357)
T pfam05913 137 NLEACHNFYPRPYTGLSYEFFLEKNRWFKKYGIKTAAFIPGDGGLRGPLYEGLPTLEKHRYLPPLAAAKHLLATGLIDDV 216 (357)
T ss_pred HEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCCCEE
T ss_conf 97997444799887889999999999999779968999727986668836887741987699999999999972898979
Q ss_pred EE-ECCCCHHHHHHHHHHHCCCE
Q ss_conf 98-27899799999999829934
Q gi|254780537|r 238 FS-ESTNSDQPAKQVAYETNASY 259 (294)
Q Consensus 238 f~-e~~~~~~~~~~ia~e~~~~~ 259 (294)
+. ++..+.+..+++++-.+-..
T Consensus 217 ~IGD~~~s~~el~~~~~~~~~~~ 239 (357)
T pfam05913 217 LIGDAYASEEELKQLSEYFNEDV 239 (357)
T ss_pred EECCCCCCHHHHHHHHHHHHCCE
T ss_conf 98699999999999999875686
Done!