HHsearch alignment for GI: 254780537 and conserved domain: pfam01297
>pfam01297 SBP_bac_9 Periplasmic solute binding protein family. This family includes periplasmic solute binding proteins such as TroA that interacts with an ATP-binding cassette transport system in Treponema pallidum.
Probab=100.00 E-value=0 Score=457.75 Aligned_cols=263 Identities=31% Similarity=0.513 Sum_probs=244.7
Q ss_pred EEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 99975289999998518914899962688980120227124577603789999887610689999974235575211123
Q gi|254780537|r 26 VLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTD 105 (294)
Q Consensus 26 Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~ 105 (294)
T Consensus 1 Vv~t~~pl~~iv~~i~gd~~~V~~l~~~g~dpH~y~~~p~d~~~l~~ADlii~~G~~~E~~l~~~~~~~~~~~~~v~~~~ 80 (272)
T pfam01297 1 VVASIPPLADLVKAIGGDKVEVTSLVPPGADPHTYEPTPSDIKKLAKADLVVYNGAGLEPWLDKLLASLANKVKVVDLSE 80 (272)
T ss_pred CEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCHHHHHHHHHHCCCCCEEEECCC
T ss_conf 98965799999999808934899806999796577689999999956999999298716789999985689984898357
Q ss_pred CCCHHHHH--------HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 74202221--------0012334630111221356789999999998643188899999989986301455337899886
Q gi|254780537|r 106 GINPIGVS--------EDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRI 177 (294)
Q Consensus 106 ~i~~~~~~--------~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~ 177 (294)
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l 160 (272)
T pfam01297 81 GIELLDAPGHEHDHDEHDHDDHGHGDPHIWLDPKNAKAMAEAIADALSELDPENAATYEKNAAAFLKKLDELDAEIKAKL 160 (272)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86555576545655555555678999806268277999999999999986854089999999999999999999999875
Q ss_pred HCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf 30784473699826652145775297288722688640007899999997620169718998278997999999998299
Q gi|254780537|r 178 EKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNA 257 (294)
Q Consensus 178 ~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~ 257 (294)
T Consensus 161 ~~~~--~~~~v~~H~af~Y~~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~ 238 (272)
T pfam01297 161 APIP--GKRVITFHDAFGYFAKAYGLEQIAILGESPESEPSPADLAELIKLIKEHNVKVIFVEPQFSPKLAETLAEETGA 238 (272)
T ss_pred HCCC--CCEEEEECCCHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCC
T ss_conf 1347--64389855506999997799275403003567889999999999999849989998389990999999999699
Q ss_pred CEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 344432012378777886899999999999998620
Q gi|254780537|r 258 SYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294)
Q Consensus 258 ~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294)
T Consensus 239 ~~~-~~~~d~l~~~~--~~~Y~~~m~~n~~~l~~al 271 (272)
T pfam01297 239 KVV-PLYLDPLGSEG--GDTYLELMRHNLDTLAEAL 271 (272)
T ss_pred CEE-EEECCCCCCCC--CCCHHHHHHHHHHHHHHHC
T ss_conf 768-87357888888--4779999999999999864