Query gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 294 No_of_seqs 135 out of 2447 Neff 7.8 Searched_HMMs 33803 Date Wed Jun 1 18:23:35 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780537.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1xvl_A Mn transporter, MNTC p 100.0 1.3E-41 0 300.8 13.1 176 20-199 42-217 (231) 2 >1pq4_A Periplasmic binding pr 100.0 2.7E-40 8.4E-45 291.9 13.6 160 22-181 1-189 (209) 3 >1toa_A Tromp-1, protein (peri 100.0 2.9E-40 8.4E-45 291.7 13.7 161 20-182 35-195 (195) 4 >2o1e_A YCDH; alpha-beta prote 100.0 2E-39 5.9E-44 286.1 13.7 166 16-181 14-189 (218) 5 >3hh8_A Metal ABC transporter 100.0 3.2E-39 9.7E-44 284.6 10.8 173 8-180 2-179 (179) 6 >3cx3_A Lipoprotein; zinc-bind 100.0 2.4E-38 7.2E-43 278.7 10.9 170 15-185 2-180 (199) 7 >2prs_A High-affinity zinc upt 100.0 1E-37 3E-42 274.5 12.9 156 25-180 1-172 (172) 8 >3gi1_A LBP, laminin-binding p 100.0 5.5E-37 1.6E-41 269.5 11.0 167 13-180 2-177 (177) 9 >3hh8_A Metal ABC transporter 99.9 1.4E-23 4E-28 179.1 12.6 112 182-293 2-113 (115) 10 >1toa_A Tromp-1, protein (peri 99.9 1.2E-22 3.4E-27 172.9 11.4 111 183-293 1-116 (118) 11 >3gi1_A LBP, laminin-binding p 99.9 2.5E-22 7.4E-27 170.6 12.9 108 183-293 1-108 (109) 12 >2prs_A High-affinity zinc upt 99.9 1.9E-21 5.7E-26 164.7 9.2 108 183-293 1-109 (112) 13 >1xvl_A Mn transporter, MNTC p 99.8 1.6E-18 4.8E-23 144.9 9.9 88 183-270 2-89 (90) 14 >2o1e_A YCDH; alpha-beta prote 99.7 2.8E-17 8.4E-22 136.5 9.4 82 184-268 1-82 (82) 15 >1pq4_A Periplasmic binding pr 99.7 7.5E-17 2.2E-21 133.7 9.7 81 184-269 2-82 (82) 16 >3cx3_A Lipoprotein; zinc-bind 99.7 2.9E-17 8.6E-22 136.4 7.6 84 184-270 1-84 (85) 17 >2gek_A Phosphatidylinositol m 84.0 2.4 7E-05 22.3 5.1 99 58-165 71-169 (169) 18 >1yya_A Triosephosphate isomer 83.2 3.4 1E-04 21.2 7.2 75 169-259 142-229 (250) 19 >3krs_A Triosephosphate isomer 77.5 5.1 0.00015 20.0 7.1 93 169-284 166-269 (271) 20 >1o5x_A TIM, triosephosphate i 77.2 5.2 0.00015 20.0 8.5 192 26-284 40-246 (248) 21 >1uqt_A Alpha, alpha-trehalose 76.8 4.7 0.00014 20.2 4.7 95 64-166 115-211 (217) 22 >1m1n_A Nitrogenase molybdenum 76.7 5.4 0.00016 19.9 11.6 148 128-293 56-223 (248) 23 >1ney_A TIM, triosephosphate i 76.7 5.1 0.00015 20.0 4.8 75 169-259 142-227 (247) 24 >3fro_A GLGA glycogen synthase 75.1 4.2 0.00012 20.6 4.0 87 68-165 100-187 (188) 25 >2j27_A Triosephosphate isomer 74.5 6.1 0.00018 19.5 8.3 91 171-284 145-248 (250) 26 >3gvg_A Triosephosphate isomer 74.0 6.3 0.00019 19.4 6.3 94 171-286 172-278 (283) 27 >1mo0_A TIM, triosephosphate i 73.9 6.3 0.00019 19.4 6.4 94 169-285 162-266 (275) 28 >3jzd_A Iron-containing alcoho 73.4 6.5 0.00019 19.3 7.1 93 171-264 25-121 (161) 29 >1m6j_A TIM, TPI, triosephosph 72.7 4.7 0.00014 20.3 3.8 92 171-284 152-256 (261) 30 >2i9e_A Triosephosphate isomer 71.5 7.2 0.00021 19.0 7.1 73 171-259 144-227 (259) 31 >1tre_A Triosephosphate isomer 70.9 7.4 0.00022 18.9 6.3 85 183-289 159-253 (255) 32 >3iv7_A Alcohol dehydrogenase 70.1 7.7 0.00023 18.8 7.0 88 176-264 31-120 (160) 33 >2iw1_A Lipopolysaccharide cor 68.9 8.1 0.00024 18.6 4.9 93 65-166 90-182 (184) 34 >2v5b_A Triosephosphate isomer 68.1 8.4 0.00025 18.5 6.7 193 41-283 34-241 (244) 35 >2a3n_A Putative glucosamine-f 67.0 8.8 0.00026 18.4 5.0 80 182-261 53-134 (192) 36 >2eq5_A 228AA long hypothetica 66.8 3.6 0.00011 21.0 2.2 84 177-260 7-100 (101) 37 >1m5w_A Pyridoxal phosphate bi 66.7 9 0.00027 18.4 5.8 41 219-262 113-154 (243) 38 >3gk0_A PNP synthase, pyridoxi 65.1 9.6 0.00028 18.2 5.7 41 219-262 141-182 (278) 39 >1nri_A Hypothetical protein H 64.8 9.7 0.00029 18.1 6.5 127 125-262 24-173 (233) 40 >1r2r_A TIM, triosephosphate i 61.5 11 0.00033 17.7 7.0 75 169-259 143-228 (248) 41 >2btm_A TIM, protein (trioseph 61.1 11 0.00033 17.7 7.1 176 24-259 37-229 (252) 42 >2vxn_A Triosephosphate isomer 58.8 12 0.00037 17.4 7.0 73 171-259 146-231 (251) 43 >3hl0_A Maleylacetate reductas 55.6 14 0.00041 17.1 7.4 88 172-263 24-118 (159) 44 >3hww_A 2-succinyl-5-enolpyruv 53.1 15 0.00045 16.8 4.4 84 21-105 24-116 (148) 45 >3c5e_A Acyl-coenzyme A synthe 52.0 16 0.00047 16.7 3.5 114 161-284 3-118 (123) 46 >2bfw_A GLGA glycogen synthase 48.8 18 0.00052 16.4 4.7 87 70-166 113-199 (200) 47 >2dgd_A 223AA long hypothetica 46.9 19 0.00056 16.2 6.2 65 196-260 20-93 (95) 48 >1aw2_A Triosephosphate isomer 46.2 19 0.00057 16.1 5.9 83 183-287 161-253 (256) 49 >2pan_A Glyoxylate carboligase 46.1 19 0.00057 16.1 8.9 85 20-105 21-122 (220) 50 >1rzu_A Glycogen synthase 1; g 45.0 11 0.00031 17.9 1.6 31 50-80 1-39 (200) 51 >1ybh_A Acetolactate synthase, 44.5 21 0.00061 15.9 5.6 82 21-104 16-112 (174) 52 >2vsq_A Surfactin synthetase s 44.4 20 0.00058 16.1 2.9 81 161-248 3-85 (107) 53 >1vmd_A MGS, methylglyoxal syn 43.7 21 0.00062 15.9 7.0 71 184-260 28-106 (120) 54 >1iv0_A Hypothetical protein; 43.4 18 0.00054 16.3 2.6 21 219-239 37-57 (98) 55 >1u11_A PURE (N5-carboxyaminoi 43.0 22 0.00064 15.8 7.0 31 71-103 75-105 (182) 56 >3eya_A Pyruvate dehydrogenase 42.3 22 0.00066 15.7 6.0 76 21-103 27-117 (180) 57 >1q6z_A BFD, BFDC, benzoylform 42.2 22 0.00066 15.7 4.0 65 20-86 26-107 (168) 58 >3ite_A SIDN siderophore synth 42.1 22 0.00065 15.7 2.8 78 161-246 3-82 (113) 59 >2iht_A Carboxyethylarginine s 41.6 22 0.00066 15.7 2.8 83 20-104 29-133 (170) 60 >1xmp_A PURE, phosphoribosylam 41.0 23 0.00068 15.6 6.2 30 72-103 66-95 (170) 61 >3kxq_A Triosephosphate isomer 40.6 23 0.00069 15.5 6.5 77 168-260 167-253 (275) 62 >1mio_B Nitrogenase molybdenum 40.4 24 0.0007 15.5 3.7 74 184-262 4-100 (109) 63 >2dp3_A Triosephosphate isomer 40.1 24 0.0007 15.5 6.5 79 183-284 162-251 (257) 64 >2e5f_A Hypothetical protein P 40.0 21 0.00063 15.8 2.5 86 166-260 3-96 (146) 65 >1h6q_A TCTP, P23FYP, translat 39.5 24 0.00072 15.4 4.0 39 130-168 85-123 (168) 66 >1gqe_A Release factor 2, RF2; 39.5 24 0.00072 15.4 5.0 22 122-143 42-63 (120) 67 >1h0h_A Formate dehydrogenase 39.1 25 0.00073 15.4 7.1 152 64-244 20-182 (216) 68 >2wvv_A Alpha-L-fucosidase; al 39.0 25 0.00073 15.4 3.7 23 217-239 294-316 (351) 69 >1ozh_A ALS, acetolactate synt 38.8 25 0.00074 15.4 4.7 112 20-144 20-149 (180) 70 >2o8v_A Phosphoadenosine phosp 38.3 25 0.00075 15.3 8.1 31 73-103 46-77 (252) 71 >1tk9_A Phosphoheptose isomera 38.0 26 0.00076 15.3 7.7 108 155-262 14-143 (188) 72 >2iv2_X Formate dehydrogenase 37.9 26 0.00076 15.3 5.9 162 64-267 7-183 (218) 73 >3ixl_A Amdase, arylmalonate d 37.5 26 0.00077 15.2 6.7 64 197-260 21-93 (95) 74 >1ovm_A Indole-3-pyruvate deca 36.0 28 0.00081 15.1 4.1 81 20-103 28-127 (169) 75 >1wo8_A Methylglyoxal synthase 36.0 28 0.00082 15.1 6.9 72 184-261 29-108 (126) 76 >1b93_A Protein (methylglyoxal 35.9 28 0.00082 15.1 7.0 71 184-260 28-106 (120) 77 >2q28_A Oxalyl-COA decarboxyla 35.7 28 0.00082 15.0 6.2 82 20-103 19-110 (177) 78 >1o4v_A Phosphoribosylaminoimi 35.3 28 0.00084 15.0 7.0 101 71-176 67-173 (183) 79 >2uz1_A Benzaldehyde lyase; th 35.1 28 0.00084 15.0 4.3 135 20-165 22-174 (186) 80 >2jfz_A Glutamate racemase; ce 34.7 29 0.00085 14.9 3.4 68 196-268 30-98 (139) 81 >3dzc_A UDP-N-acetylglucosamin 34.5 15 0.00044 16.9 1.0 36 125-162 150-185 (185) 82 >1m1n_B Nitrogenase molybdenum 33.3 30 0.0009 14.8 8.5 105 171-281 48-182 (215) 83 >3lmz_A Putative sugar isomera 33.0 31 0.00091 14.8 7.0 53 22-80 16-80 (257) 84 >2dwc_A PH0318, 433AA long hyp 31.6 32 0.00096 14.6 5.3 77 181-259 17-108 (108) 85 >3kuu_A Phosphoribosylaminoimi 31.2 33 0.00097 14.6 6.5 39 63-103 52-96 (174) 86 >3glr_A NAD-dependent deacetyl 31.1 33 0.00097 14.6 3.1 74 31-104 9-108 (142) 87 >2rkb_A Serine dehydratase-lik 30.9 33 0.00098 14.5 3.7 56 193-256 15-72 (79) 88 >2f9f_A First mannosyl transfe 30.4 34 0.001 14.5 2.5 18 127-144 143-160 (177) 89 >2e7z_A Acetylene hydratase AH 30.4 34 0.001 14.5 4.2 54 190-243 70-123 (166) 90 >3e7w_A D-alanine--poly(phosph 29.7 28 0.00084 15.0 1.8 81 161-247 3-85 (106) 91 >1wpb_A Hypothetical protein Y 29.6 35 0.001 14.4 3.2 30 135-165 17-46 (60) 92 >2d59_A Hypothetical protein P 29.3 35 0.001 14.3 5.1 70 192-261 35-129 (144) 93 >3k5p_A D-3-phosphoglycerate d 29.0 36 0.0011 14.3 3.6 85 17-112 9-96 (144) 94 >2x0d_A WSAF; GT4 family, tran 29.0 31 0.00093 14.7 1.9 71 66-145 76-146 (160) 95 >1x7f_A Outer surface protein; 28.9 36 0.0011 14.3 4.0 69 185-253 165-264 (267) 96 >3cf4_G Acetyl-COA decarbonyla 28.9 36 0.0011 14.3 4.2 26 63-88 98-123 (170) 97 >3l6b_A Serine racemase; pyrid 28.7 36 0.0011 14.3 4.6 58 193-258 18-77 (82) 98 >2fek_A Low molecular weight p 28.5 36 0.0011 14.3 4.9 66 24-89 25-112 (167) 99 >1yz1_A Translationally contro 28.5 36 0.0011 14.3 4.5 39 130-168 91-129 (174) 100 >2q7x_A UPF0052 protein SP_156 28.2 33 0.00098 14.5 1.9 26 60-85 56-82 (210) 101 >2vbf_A Branched-chain alpha-k 27.7 38 0.0011 14.2 4.7 81 20-103 26-125 (163) 102 >1zbt_A RF-1, peptide chain re 27.5 38 0.0011 14.1 4.3 20 121-140 33-52 (116) 103 >3kws_A Putative sugar isomera 27.5 38 0.0011 14.1 8.0 48 23-78 25-81 (287) 104 >1dbg_A Chondroitinase B; beta 27.5 38 0.0011 14.1 2.5 47 1-47 1-49 (474) 105 >2jgq_A Triosephosphate isomer 27.1 38 0.0011 14.1 6.1 63 181-259 148-213 (233) 106 >1txj_A Translationally contro 26.5 39 0.0012 14.0 4.5 38 130-167 88-125 (171) 107 >3c48_A Predicted glycosyltran 26.4 40 0.0012 14.0 5.3 90 67-166 98-187 (188) 108 >3fj1_A Putative phosphosugar 26.0 40 0.0012 14.0 3.8 27 219-245 104-130 (193) 109 >1iow_A DD-ligase, DDLB, D-ALA 25.8 41 0.0012 13.9 2.4 37 210-246 11-47 (100) 110 >1cb8_A Protein (chondroitinas 25.6 41 0.0012 13.9 3.2 26 139-164 31-56 (59) 111 >2vsy_A XCC0866; transferase, 25.4 41 0.0012 13.9 5.4 95 64-165 82-176 (179) 112 >2c31_A Oxalyl-COA decarboxyla 25.2 41 0.0012 13.9 5.5 65 20-86 19-93 (179) 113 >2p0o_A Hypothetical protein D 25.2 42 0.0012 13.9 3.4 22 48-69 36-57 (225) 114 >1b9b_A TIM, protein (trioseph 25.1 42 0.0012 13.9 5.5 72 172-259 147-231 (255) 115 >1amu_A GRSA, gramicidin synth 25.0 42 0.0012 13.8 2.8 77 160-243 2-80 (107) 116 >1l5w_A Maltodextrin phosphory 24.9 42 0.0012 13.8 3.0 78 65-145 161-240 (322) 117 >1ko7_A HPR kinase/phosphatase 24.3 43 0.0013 13.8 3.8 45 217-261 64-109 (129) 118 >3ks9_A Mglur1, metabotropic g 24.0 44 0.0013 13.7 3.5 46 195-240 38-83 (190) 119 >2vbi_A Pyruvate decarboxylase 23.9 44 0.0013 13.7 6.0 82 20-103 25-124 (165) 120 >2po3_A 4-dehydrase; external 23.7 44 0.0013 13.7 6.7 128 130-260 5-142 (233) 121 >1p5j_A L-serine dehydratase; 23.5 45 0.0013 13.7 4.1 56 193-256 15-72 (80) 122 >2o2z_A Hypothetical protein; 23.3 43 0.0013 13.7 1.7 37 33-69 16-60 (323) 123 >2h31_A Multifunctional protei 22.7 46 0.0014 13.6 7.4 67 197-266 27-94 (134) 124 >3iv4_A Putative oxidoreductas 22.7 46 0.0014 13.6 4.4 46 214-259 35-80 (112) 125 >1vq8_P 50S ribosomal protein 22.6 21 0.00061 15.9 -0.0 20 125-144 21-40 (57) 126 >1z7w_A Cysteine synthase; tra 22.6 46 0.0014 13.5 3.3 66 183-256 24-98 (106) 127 >2gi4_A Possible phosphotyrosi 22.5 47 0.0014 13.5 4.6 78 54-139 63-140 (156) 128 >1nui_A DNA primase/helicase; 22.4 47 0.0014 13.5 4.4 104 183-294 12-118 (118) 129 >1t9b_A Acetolactate synthase, 22.3 47 0.0014 13.5 4.5 63 20-85 30-111 (197) 130 >2bpl_A Glucosamine--fructose- 22.3 47 0.0014 13.5 2.9 34 227-260 59-95 (159) 131 >3eua_A Putative fructose-amin 22.0 48 0.0014 13.5 2.4 27 219-245 87-113 (155) 132 >2pju_A Propionate catabolism 21.9 48 0.0014 13.4 4.2 67 183-260 16-86 (89) 133 >2q5c_A NTRC family transcript 21.5 49 0.0014 13.4 3.3 66 184-260 17-86 (90) 134 >2z4t_A Beta-galactoside alpha 21.4 33 0.00098 14.5 0.8 57 1-63 1-60 (111) 135 >2pgn_A Cyclohexane-1,2-dione 21.2 49 0.0015 13.4 5.6 81 20-103 22-119 (190) 136 >1usg_A Leucine-specific bindi 21.0 50 0.0015 13.3 6.5 78 178-260 13-100 (150) 137 >2zkr_p 60S ribosomal protein 20.9 19 0.00055 16.2 -0.6 20 125-144 21-40 (57) 138 >1v5e_A Pyruvate oxidase; oxid 20.7 51 0.0015 13.3 6.0 65 20-86 22-101 (222) 139 >2zj3_A Glucosamine--fructose- 20.7 51 0.0015 13.3 4.6 28 219-246 120-147 (216) 140 >2ki0_A DS119; beta-alpha-beta 20.7 32 0.00094 14.6 0.6 23 217-239 12-34 (36) 141 >2oho_A Glutamate racemase; is 20.3 52 0.0015 13.2 5.5 46 219-264 60-106 (142) 142 >2p0y_A Hypothetical protein L 20.3 52 0.0015 13.2 2.3 10 67-76 183-192 (341) 143 >1tzj_A ACC deaminase, 1-amino 20.1 52 0.0015 13.2 1.9 53 193-245 43-95 (124) No 1 >>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} (A:1-201,A:292-321) Probab=100.00 E-value=1.3e-41 Score=300.77 Aligned_cols=176 Identities=40% Similarity=0.653 Sum_probs=154.8 Q ss_pred CCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCC Q ss_conf 35882899975289999998518914899962688980120227124577603789999887610689999974235575 Q gi|254780537|r 20 TTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTK 99 (294) Q Consensus 20 ~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~ 99 (294) .+++++||||++|+++++++|+||+++|++|+|+|.|||+|||+|+|+++|++||+|||||.+||+|+.+++.+. ++.. T Consensus 42 ~~~~l~VvaT~~pl~~~vk~IaGd~v~V~~Li~~g~dPH~yeptp~d~~~i~~ADlii~~G~~~e~~l~~~~~~~-~~~~ 120 (231) T 1xvl_A 42 TEEKKKVLTTFTVLADMVQNVAGDKLVVESITRIGAEIHGYEPTPSDIVKAQDADLILYNGMNLERWFEQFLGNV-KDVP 120 (231) T ss_dssp CCCCCEEEESSHHHHHHHHHHHTTTSEEEESSCSSCCCSSCCCCHHHHHHHHTCSEEEECCTTSSTTHHHHHHTS-SSCC T ss_pred CCCCCEEEEECHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHC-CCCC T ss_conf 789858999775999999998088269998269897953576899999999669999995997308999987633-4554 Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC Q ss_conf 21112374202221001233463011122135678999999999864318889999998998630145533789988630 Q gi|254780537|r 100 IITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEK 179 (294) Q Consensus 100 ~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~ 179 (294) ++.+++++......+ +++|++.|||+|+||.|++.++++|++.|+++||+++++|++|+++|.++|++|+.+++..+++ T Consensus 121 ~i~~~~~~~~~~~~~-~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~ 199 (231) T 1xvl_A 121 SVVLTEGIEPIPIAD-GPYTDKPNPHAWMSPRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQ 199 (231) T ss_dssp EEETTTTCCCCBCCS-SSSTTSBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTT T ss_pred CEEECCCCCCCCCCC-CCCCCCCCCHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 201113545554346-7653567611101658899999999999876380125799999999997788889999987642 Q ss_pred CCCCCCEEEEECCCCHHHHH Q ss_conf 78447369982665214577 Q gi|254780537|r 180 VDPEKRWFVTSEGCLVYLAE 199 (294) Q Consensus 180 ~p~~~~~~v~~H~af~Y~~~ 199 (294) +|.+ .+-++-+-+.|=+| T Consensus 200 i~~~--~~~~~~~~~~~~~~ 217 (231) T 1xvl_A 200 VPEG--PVPTFLDLLEYDAR 217 (231) T ss_dssp SCSS--SCCSHHHHHHHHHH T ss_pred CCCC--CCCCHHHHHHHHHH T ss_conf 7798--86779999999999 No 2 >>1pq4_A Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} (A:1-188,A:271-291) Probab=100.00 E-value=2.7e-40 Score=291.86 Aligned_cols=160 Identities=23% Similarity=0.373 Sum_probs=147.6 Q ss_pred CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC Q ss_conf 88289997528999999851891489996268898012022712457760378999988761068999997423557521 Q gi|254780537|r 22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKII 101 (294) Q Consensus 22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i 101 (294) ++++||||++|++++|++|+||+++|++|+|+|.|||+|+|+|+|+++|++||||||||.+||+|+.+.+.+.+++.++| T Consensus 1 ek~~VvtS~~pl~~lv~~I~gd~v~V~~l~~~g~dpH~ye~tp~d~~~l~~ADliv~~G~~lE~~~~~~~~~~~~~~~vi 80 (209) T 1pq4_A 1 DAMDITVSIPPQQYFLEKIGGDLVRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGFEQPWLEKLKAANANMKLI 80 (209) T ss_dssp CCEEEEESSHHHHHHHHHHHGGGEEEEESSCTTSCGGGCCCCHHHHHHGGGCSEEEECCTTTTTTTHHHHHHHCSSSEEE T ss_pred CCCEEEEECHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCC T ss_conf 99789997589999999983893479981698989756768999999996499999958726789999998735788741 Q ss_pred CCCCCCCHHHHHH-----------------------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 1123742022210-----------------------------01233463011122135678999999999864318889 Q gi|254780537|r 102 TVTDGINPIGVSE-----------------------------DTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNA 152 (294) Q Consensus 102 ~~~~~i~~~~~~~-----------------------------~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~ 152 (294) ++++++..+...+ ++++++..|||+||||.|++.++++|++.|+++||+++ T Consensus 81 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dPHiWldp~na~~~a~~Ia~~L~~~dP~~~ 160 (209) T 1pq4_A 81 DSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAKGALMVADPHIWLSPTLVKRQATTIAKELAELDPDNR 160 (209) T ss_dssp ETTTTCCCCBSCC----------------------------------CCBCCCGGGCHHHHHHHHHHHHHHHHHHCGGGH T ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHCCCCH T ss_conf 00157230002345665532356544444565445543322224666889982556888999999999999988680138 Q ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCC Q ss_conf 99999899863014553378998863078 Q gi|254780537|r 153 KKYELNAREYSEKIRNSILPLKTRIEKVD 181 (294) Q Consensus 153 ~~y~~N~~~~~~~l~~l~~~~~~~~~~~p 181 (294) ++|++|+++|.++|.+|+.+++++++++. T Consensus 161 ~~y~~N~~~~~~~L~~Ld~~~~~~l~~i~ 189 (209) T 1pq4_A 161 DQYEANLAAFLAELERLNQELGQILQPLA 189 (209) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCS T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999999999999999999999864310 No 3 >>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} (A:1-195) Probab=100.00 E-value=2.9e-40 Score=291.71 Aligned_cols=161 Identities=24% Similarity=0.403 Sum_probs=145.2 Q ss_pred CCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCC Q ss_conf 35882899975289999998518914899962688980120227124577603789999887610689999974235575 Q gi|254780537|r 20 TTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTK 99 (294) Q Consensus 20 ~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~ 99 (294) .+++++||||++|++++|++|+||+++|++|+|+|.|||+|||+|+|++++++||++||||.++|+|+.++..+...... T Consensus 35 ~~~~~~Vvts~~p~~~~v~~I~gd~~~V~~l~~~~~dpH~y~p~p~d~~~l~~aDl~v~~G~~~e~~~~~~~~~~~~~~~ 114 (195) T 1toa_A 35 ADGKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGNADLILYNGLHLETKMGEVFSKLRGSRL 114 (195) T ss_dssp --CCCEEEESSHHHHHHHHHHHGGGSEEEESCCTTCCTTTCCCCHHHHHHHHHCSEEEECCTTCSTTCHHHHHHHTTSSE T ss_pred CCCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCC T ss_conf 06996799988699999999808825899805979796568689999999955999999289877477999986457776 Q ss_pred CCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC Q ss_conf 21112374202221001233463011122135678999999999864318889999998998630145533789988630 Q gi|254780537|r 100 IITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEK 179 (294) Q Consensus 100 ~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~ 179 (294) ++..... .....+++++++..|||+|+||.|++.++++|++.|+++||+++++|++|+++|.++|++|+++++.++++ T Consensus 115 ~~~~~~~--~~~~~~~~~~~~~~dpH~W~~p~~~~~~a~~i~~~L~~ldP~~~~~y~~n~~~~~~~l~~l~~~~~~~l~~ 192 (195) T 1toa_A 115 VVAVSET--IPVSQRLSLEEAEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQS 192 (195) T ss_dssp EEEGGGG--SCGGGSCBSTTSCBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred CCCCCCC--CCCCCCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 5201444--23211235442223420230733689999999999998767667788778999999999987899999875 Q ss_pred CCC Q ss_conf 784 Q gi|254780537|r 180 VDP 182 (294) Q Consensus 180 ~p~ 182 (294) +|. T Consensus 193 iPa 195 (195) T 1toa_A 193 LPA 195 (195) T ss_dssp SCG T ss_pred HHC T ss_conf 303 No 4 >>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} (A:1-189,A:284-312) Probab=100.00 E-value=2e-39 Score=286.05 Aligned_cols=166 Identities=26% Similarity=0.356 Sum_probs=149.7 Q ss_pred CCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC Q ss_conf 46433588289997528999999851891489996268898012022712457760378999988761068999997423 Q gi|254780537|r 16 SASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLK 95 (294) Q Consensus 16 ~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~ 95 (294) ++...+++++||||++|++++|++|+||+++|++|+|+|+|||+|+|+|+|+++|++||+||+||.++|+|+.+++.+.. T Consensus 14 ~~~~~~~~l~VvaT~~pl~divk~I~gd~~~V~~li~~g~dPH~yeptpsd~~~l~~ADlii~~G~~~E~~~~~~~~~~~ 93 (218) T 2o1e_A 14 SADSKGDKLHVVTTFYPXYEFTKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADLFVYNSEYXETWVPSAEKSXG 93 (218) T ss_dssp -------CEEEEESSHHHHHHHHHHHGGGEEEEESSCTTSCTTTCCCCHHHHHHHHHSSEEEESCTTTSTTHHHHHHTTC T ss_pred CCCCCCCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCC T ss_conf 75456898589998789999999980894389980598989845658999999996699999878532778999998645 Q ss_pred C-CCCCCCCCCCCCHHHHHH---------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 5-575211123742022210---------012334630111221356789999999998643188899999989986301 Q gi|254780537|r 96 K-GTKIITVTDGINPIGVSE---------DTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEK 165 (294) Q Consensus 96 ~-~~~~i~~~~~i~~~~~~~---------~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 165 (294) . +..+++++++++.....+ +.+++++.|||+|+||.|++.++++|++.|++++|+++++|++|+++|.++ T Consensus 94 ~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~dPHiWldp~n~~~~a~~I~~~L~~l~P~~~~~y~~N~~~~~~~ 173 (218) T 2o1e_A 94 QGHAVFVNASKGIDLXEGSEEEHEEHDHGEHEHSHAXDPHVWLSPVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAK 173 (218) T ss_dssp SSSCEEEETTTTCCCCCC----------------CCCCCGGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH T ss_pred CCCCEEEECCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH T ss_conf 67841343135720100122222345543344444567301039999999999999999776651205899999999987 Q ss_pred HHHHHHHHHHHHHCCC Q ss_conf 4553378998863078 Q gi|254780537|r 166 IRNSILPLKTRIEKVD 181 (294) Q Consensus 166 l~~l~~~~~~~~~~~p 181 (294) |++++++++..++++. T Consensus 174 l~~l~~~~~~~l~~ik 189 (218) T 2o1e_A 174 LQDLDKLYRTTAKKAE 189 (218) T ss_dssp HHHHHHHHHHHHHSCS T ss_pred HHHHHHHHHHHHHCCC T ss_conf 5557899987433025 No 5 >>3hh8_A Metal ABC transporter substrate-binding lipoprotein; metal binding, cell membrane, copper, copper transport, ION transport; 1.87A {Streptococcus pyogenes serotype M1} PDB: 1psz_A (A:1-179) Probab=100.00 E-value=3.2e-39 Score=284.61 Aligned_cols=173 Identities=32% Similarity=0.482 Sum_probs=151.7 Q ss_pred HHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHH Q ss_conf 99999860464335882899975289999998518914899962688980120227124577603789999887610689 Q gi|254780537|r 8 LLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETY 87 (294) Q Consensus 8 l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~ 87 (294) |.+|....+..+.+++++||||++|++++|++|+||+++|++|+|+|.|||+|+|+|+|+++|++||++|+||.+||+|+ T Consensus 2 l~~~~~~~~~~~~~~~~~Vvtt~~pl~~lvk~I~gd~~~V~~l~~~~~dpH~~e~~~~d~~~l~~ADl~~~~G~~~e~~~ 81 (179) T 3hh8_A 2 IPRNSSTGAKTAKSDKLKVVATNSIIADMTKAIAGDKIDLHSIVPIGQDPHEYEPLPEDAEKTSNADVIFYNGINLEDGG 81 (179) T ss_dssp -------------CCSEEEEESSHHHHHHHHHHHGGGEEEEECSCTTSCSSSCCCCHHHHHHHHHCSEEEECCTTSSCST T ss_pred CCCCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHCCCCEEEECCCCCCHHH T ss_conf 99888999875668984799977099999999809845999816999896666689999999708999998388620668 Q ss_pred HHHHHHCCCCCCCCCCCCCCCHHHH-----HHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999742355752111237420222-----10012334630111221356789999999998643188899999989986 Q gi|254780537|r 88 MKYFTNLKKGTKIITVTDGINPIGV-----SEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREY 162 (294) Q Consensus 88 ~~~~~~~~~~~~~i~~~~~i~~~~~-----~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~ 162 (294) .+++.+..++...+...++...... ..+.+++++.|||+|+||.|++.++++|++.|+++||+++++|++|+++| T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpH~Wl~p~~~~~~a~~i~~~L~~~dP~~~~~y~~N~~~~ 161 (179) T 3hh8_A 82 QAWFTKLVKNAQKTKNKDYFAVSDGIDVIYLEGASEKGKEDPHAWLNLENGIIYSKNIAKQLIAKDPKNKETYEKNLKAY 161 (179) T ss_dssp TSHHHHHHHHTTCCBTTTEEETTTTSCCCBSTTCCSTTCBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH T ss_conf 99999987531023687669842464334456655457877531589889999999999999876934279999879999 Q ss_pred HCCHHHHHHHHHHHHHCC Q ss_conf 301455337899886307 Q gi|254780537|r 163 SEKIRNSILPLKTRIEKV 180 (294) Q Consensus 163 ~~~l~~l~~~~~~~~~~~ 180 (294) .++|++|+.++++.++++ T Consensus 162 ~~~l~~l~~~~~~~~~~i 179 (179) T 3hh8_A 162 VAKLEKLDKEAKSKFDAI 179 (179) T ss_dssp HHHHHHHHHHHHHTTTTS T ss_pred HHHHHHHHHHHHHHHHHC T ss_conf 998888899999986422 No 6 >>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae} (A:1-176,A:262-284) Probab=100.00 E-value=2.4e-38 Score=278.72 Aligned_cols=170 Identities=21% Similarity=0.322 Sum_probs=150.7 Q ss_pred CCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHC Q ss_conf 04643358828999752899999985189148999626889801202271245776037899998876106899999742 Q gi|254780537|r 15 MSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNL 94 (294) Q Consensus 15 ~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~ 94 (294) ++.+..+++++||||++|+++++++|+||+++|++|+| |+|||+|+|+|+|+++|++||+||++|.+||+|+.+++.+. T Consensus 2 ~~~~~~~~~~~VVtS~~pl~~ivk~I~gd~v~V~~l~p-g~dPH~yeptp~di~~i~~ADliv~~G~~~E~~~~~~~~~~ 80 (199) T 3cx3_A 2 QKESQTGKGXKIVTSFYPIYAXVKEVSGDLNDVRXIQS-SSGIHSFEPSANDIAAIYDADVFVYHSHTLESWAGSLDPNL 80 (199) T ss_dssp -----CCSCCEEEESSHHHHHHHHHHHTTSSEEEECCC-CSCTTTCCCCHHHHHHHHHSSEEEESCTTTSCTTTTCCTTT T ss_pred CCCCCCCCCCEEEEECHHHHHHHHHHCCCCCEEEECCC-CCCCCCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHH T ss_conf 87777899968999878999999997499614997289-98986244799999998559999990886368899999976 Q ss_pred C-CCCCCCCCCCCCCHHH--------HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 3-5575211123742022--------210012334630111221356789999999998643188899999989986301 Q gi|254780537|r 95 K-KGTKIITVTDGINPIG--------VSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEK 165 (294) Q Consensus 95 ~-~~~~~i~~~~~i~~~~--------~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 165 (294) . ++..++.++.++.... ..+++++++..|||+||||.|+++|+++|++.|+++||+++++|++|+++|.++ T Consensus 81 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dPHiWldp~n~~~~a~~I~~~L~~~~P~~k~~y~~N~~~~~~~ 160 (199) T 3cx3_A 81 KKSKVKVLEASEGXTLERVPGLEDVEAGDGVDEKTLYDPHTWLDPEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKK 160 (199) T ss_dssp TTCCCEEEETTTTCCCCBCCC-------------CCBCCCGGGSHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHH T ss_pred HCCCCCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 40255302210100001367633444555422135775014036401788999899898765033278899999999877 Q ss_pred HHHHHHHHHHHHHCCCCCCC Q ss_conf 45533789988630784473 Q gi|254780537|r 166 IRNSILPLKTRIEKVDPEKR 185 (294) Q Consensus 166 l~~l~~~~~~~~~~~p~~~~ 185 (294) |.+|+.++++.++++|..+. T Consensus 161 L~~L~~~~~~~l~~~p~~~~ 180 (199) T 3cx3_A 161 AQELTKKFQPKFEKATPQND 180 (199) T ss_dssp HHHHHHHHHHHHHSCSCCSS T ss_pred HHHHHHHHHHHHHHCCCCCC T ss_conf 65555889876531258886 No 7 >>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A (A:1-172) Probab=100.00 E-value=1e-37 Score=274.51 Aligned_cols=156 Identities=21% Similarity=0.362 Sum_probs=142.4 Q ss_pred EEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCC-CCCCCCCC Q ss_conf 89997528999999851891489996268898012022712457760378999988761068999997423-55752111 Q gi|254780537|r 25 VVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLK-KGTKIITV 103 (294) Q Consensus 25 ~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~-~~~~~i~~ 103 (294) +||||++|++++|++|+||+++|++|+|+|+|||+|+|+|+|+++|++||+||++|.+||+|+.+++.+.. ++..++++ T Consensus 1 tVv~s~~pl~~lv~~I~gd~~~v~~l~~~~~dpH~y~~~~~d~~~l~~Adl~i~~G~~~E~~~~~~~~~~~~~~~~~i~~ 80 (172) T 2prs_A 1 AVVASLKPVGFIASAIADGVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLPGAKQVTIAQ 80 (172) T ss_dssp CEEESSHHHHHHHHHHHTTTSCEEESSCTTCBTTBCCCCTTHHHHHHHCSEEEECCTTTCGGGHHHHHTSCGGGEEEGGG T ss_pred CEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCCCCHHH T ss_conf 98996479999999985996479980598989667868999999996699999918541788999998563678511113 Q ss_pred CCCCCHHHHH---------------HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 2374202221---------------0012334630111221356789999999998643188899999989986301455 Q gi|254780537|r 104 TDGINPIGVS---------------EDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRN 168 (294) Q Consensus 104 ~~~i~~~~~~---------------~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~ 168 (294) ++++++.... .+++++++.|||+|+||.|++.++++|++.|+++||+++++|++|+++|.++|.+ T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~L~~ 160 (172) T 2prs_A 81 LEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWLSPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLAS 160 (172) T ss_dssp CTTTGGGCCC---------------------CCCCCCGGGCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH T ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH T ss_conf 13655542123466554432223443222357776136646377899999999999864836566788899999988878 Q ss_pred HHHHHHHHHHCC Q ss_conf 337899886307 Q gi|254780537|r 169 SILPLKTRIEKV 180 (294) Q Consensus 169 l~~~~~~~~~~~ 180 (294) |+.++++.++++ T Consensus 161 ld~~~~~~~~~i 172 (172) T 2prs_A 161 TETQVGNELAPL 172 (172) T ss_dssp HHHHHHHHHGGG T ss_pred HHHHHHHHHCHH T ss_conf 889999872424 No 8 >>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A (A:1-177) Probab=100.00 E-value=5.5e-37 Score=269.54 Aligned_cols=167 Identities=24% Similarity=0.326 Sum_probs=142.6 Q ss_pred HHCCCCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHH Q ss_conf 86046433588289997528999999851891489996268898012022712457760378999988761068999997 Q gi|254780537|r 13 IPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFT 92 (294) Q Consensus 13 ~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~ 92 (294) |..+....+++++||||++|++++|++|+||.++|+ ++|+|.|||+|+|+|+|+++|++||+|||||.+||+|+.+++. T Consensus 2 c~~~~~~~~~~~~Vv~s~~pl~~~v~~I~gd~~~~~-li~~g~dpH~~e~~p~d~~~i~~ADlvv~~G~~~e~~~~~~~~ 80 (177) T 3gi1_A 2 SGANPKQPTQGMSVVTSFYPMYAMTKEVSGDLNDVR-MIQSGAGIHSFEPSVNDVAAIYDADLFVYHSHTLEAWARDLDP 80 (177) T ss_dssp --------CCSCEEEESSHHHHHHHHHHHTTSSEEE-EC-----CCSCCCCHHHHHHHHTSSEEEESCTTTSGGGTTCCT T ss_pred CCCCCCCCCCCCEEEEECHHHHHHHHHHCCCCEEEE-ECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHHH T ss_conf 999987788984899987899999999818950699-7289989776768999999985599999949974078999998 Q ss_pred HCCCCCCCC-CCCCCCCH--------HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 423557521-11237420--------222100123346301112213567899999999986431888999999899863 Q gi|254780537|r 93 NLKKGTKII-TVTDGINP--------IGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYS 163 (294) Q Consensus 93 ~~~~~~~~i-~~~~~i~~--------~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~ 163 (294) +...+...+ ........ ....++.+++++.|||+|+||.|++.++++|++.|+++||+++++|++|+++|. T Consensus 81 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dpH~W~~p~~~~~~a~~i~~~L~~~dP~~~~~y~~n~~~~~ 160 (177) T 3gi1_A 81 NLKKSKVDVFEASKPLTLDRVKGLEDMEVTQGIDPATLYDPHTWTDPVLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFK 160 (177) T ss_dssp TTTTCCCEEEETTTTSCCCBCC---------------CBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH T ss_pred HCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH T ss_conf 53456731331345544332256664334434455789998804789999999999999997427677899999999999 Q ss_pred CCHHHHHHHHHHHHHCC Q ss_conf 01455337899886307 Q gi|254780537|r 164 EKIRNSILPLKTRIEKV 180 (294) Q Consensus 164 ~~l~~l~~~~~~~~~~~ 180 (294) ++|++|++++++.++++ T Consensus 161 ~~l~~l~~~~~~~~~~i 177 (177) T 3gi1_A 161 KEAEQLTEEYTQKFKKV 177 (177) T ss_dssp HHHHHHHHHHHHHHTTC T ss_pred HHHHHHHHHHHHHHHHH T ss_conf 99999999999998653 No 9 >>3hh8_A Metal ABC transporter substrate-binding lipoprotein; metal binding, cell membrane, copper, copper transport, ION transport; 1.87A {Streptococcus pyogenes serotype M1} PDB: 1psz_A (A:180-294) Probab=99.91 E-value=1.4e-23 Score=179.15 Aligned_cols=112 Identities=29% Similarity=0.613 Sum_probs=107.9 Q ss_pred CCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEE Q ss_conf 44736998266521457752972887226886400078999999976201697189982789979999999982993444 Q gi|254780537|r 182 PEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGG 261 (294) Q Consensus 182 ~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~ 261 (294) .+++.|+++|++|+||+++|||++.++.+++++.+|||++|.++++.||+++|+|||+|++++++.++.|++++|++++. T Consensus 2 ~~~~~~~~~H~af~Y~~~~ygl~~~~~~~~~~~~eps~~~i~~l~~~ik~~~i~~if~e~~~~~~~~~~ia~~~~~~~~~ 81 (115) T 3hh8_A 2 ENKKLIVTSEGCFKYFSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVESSVDRRPMETVSKDSGIPIYS 81 (115) T ss_dssp GGGCCEEEEESCCHHHHHHHTCCEEEEESSCCSCCCCHHHHHHHHHHHHHSCCSCEEEETTSCSHHHHHHHHHHCCCEEE T ss_pred CCCEEEEEECHHHHHHHHHCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCCEEC T ss_conf 45547886161789999986983103556577655577999999999760587589973889939999999980997641 Q ss_pred EEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC Q ss_conf 32012378777886899999999999998620 Q gi|254780537|r 262 VLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294) Q Consensus 262 ~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294) +.+++++++.+.++.+|++||++|+++|.+|| T Consensus 82 l~pl~~~~e~~~~~~~Y~~~m~~n~~~l~~al 113 (115) T 3hh8_A 82 EIFTDSIAKKGKPGDSYYAMMKWNLDKISEGL 113 (115) T ss_dssp EECSSSCCCTTSTTCSHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 14655677889874779999999999999986 No 10 >>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} (A:196-313) Probab=99.89 E-value=1.2e-22 Score=172.86 Aligned_cols=111 Identities=23% Similarity=0.313 Sum_probs=102.1 Q ss_pred CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE Q ss_conf 47369982665214577529728872268864000789999999762016971899827899799999999829934443 Q gi|254780537|r 183 EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV 262 (294) Q Consensus 183 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294) ++|.++++|++|+||+++|||++.++.+++++.+||+++|+++++.||+++|+|||+|++++++.++.|++++++++..+ T Consensus 1 k~r~~v~~H~af~Y~~~~ygl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~~~~~~~l 80 (118) T 1toa_A 1 ERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQARGHVV 80 (118) T ss_dssp GGCEEEEEESCCHHHHHHHTCEEEEEECSSCSSCCCHHHHHHHHHHHHHTTCSEEEEETTSCTHHHHHHHHHHHTTTCCC T ss_pred CCEEEEECCCCHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEE T ss_conf 55145411541034666338540101234443012147999999999864996899848999089999999857884132 Q ss_pred EEC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHC Q ss_conf 201-----2378777886899999999999998620 Q gi|254780537|r 263 LYV-----DSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294) Q Consensus 263 ~~~-----d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294) .++ |.+++.+.++++|++||+.|+++|.+|| T Consensus 81 ~p~~~l~~d~l~~~~~~~~~Y~~~m~~n~~~l~~aL 116 (118) T 1toa_A 81 QIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVAAL 116 (118) T ss_dssp EEEEEECSSSCCCTTSGGGSHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf 557723544456778886779999999999999986 No 11 >>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A (A:178-286) Probab=99.89 E-value=2.5e-22 Score=170.60 Aligned_cols=108 Identities=28% Similarity=0.406 Sum_probs=102.6 Q ss_pred CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE Q ss_conf 47369982665214577529728872268864000789999999762016971899827899799999999829934443 Q gi|254780537|r 183 EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV 262 (294) Q Consensus 183 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294) ++|.|+++|++|+||+++|||++.++.+.+++.+|||++++++++.||+++|+|||+|++.+++.++.|++++++++.. T Consensus 1 k~~~~~~~H~af~Yl~~~ygl~~~~~~~~~~~~~ps~~~i~~l~~~ik~~~i~~i~~e~~~~~~~~~~ia~~~~~~~~~- 79 (109) T 3gi1_A 1 RSKTFVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVKT- 79 (109) T ss_dssp SCCEEEEEESCCHHHHHHTTCEEEEEECSCC---CCHHHHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEEE- T ss_pred CCCCEEEECCHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCEEE- T ss_conf 2774685160567899976982763256687678998999999999997599889995889939999999982998787- Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHHHHHHHC Q ss_conf 2012378777886899999999999998620 Q gi|254780537|r 263 LYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294) Q Consensus 263 ~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294) +|+++.....+.+|++||+.|+++|.+|| T Consensus 80 --l~~l~~~~~~~~~Y~~~m~~n~~~l~~aL 108 (109) T 3gi1_A 80 --LSPLEAAPSGNKTYLENLRANLEVLYQQL 108 (109) T ss_dssp --CCCSCSCCSSSCCHHHHHHHHHHHHHHHH T ss_pred --ECCCCCCCCCCCCHHHHHHHHHHHHHHHH T ss_conf --47776788886659999999999999971 No 12 >>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A (A:173-284) Probab=99.86 E-value=1.9e-21 Score=164.65 Aligned_cols=108 Identities=17% Similarity=0.257 Sum_probs=99.9 Q ss_pred CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE Q ss_conf 47369982665214577529728872268864000789999999762016971899827899799999999829934443 Q gi|254780537|r 183 EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV 262 (294) Q Consensus 183 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294) ++|.++++|++|+||+++|||++.++.+.++|.+|||++|.++++.||+++|+|||+|++.+++.++.|++++|++++. T Consensus 1 k~~~~v~~H~a~~Y~~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~i~~i~~e~~~~~~~~~~la~~~~~~~~~- 79 (112) T 2prs_A 1 KGKGYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGT- 79 (112) T ss_dssp TTCCEEEEESCCHHHHHHHTCCCCEEEESSTTSCCCHHHHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEEE- T ss_pred HCCCEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHCCCCEEE- T ss_conf 3374010162489999973992556761145557788899999998773498389996888929999999980997798- Q ss_pred EECCCCCCCC-CCCCCHHHHHHHHHHHHHHHC Q ss_conf 2012378777-886899999999999998620 Q gi|254780537|r 263 LYVDSLSKPD-GPAPTYLDLLRFSLTKIVDTL 293 (294) Q Consensus 263 ~~~d~l~~~~-~~~~~Y~~~m~~N~~~l~~aL 293 (294) +|+++... ..+++|++||++|+++|++|| T Consensus 80 --ld~l~~~~~~~~~~Y~~~m~~n~~~l~~~l 109 (112) T 2prs_A 80 --LDPLGTNIKLGKTSYSEFLSQLANQYASCL 109 (112) T ss_dssp --CCTTCTTSCCSTTHHHHHHHHHHHHHHHHH T ss_pred --ECCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf --447756777770429999999999999986 No 13 >>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} (A:202-291) Probab=99.77 E-value=1.6e-18 Score=144.90 Aligned_cols=88 Identities=43% Similarity=0.826 Sum_probs=84.7 Q ss_pred CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEE Q ss_conf 47369982665214577529728872268864000789999999762016971899827899799999999829934443 Q gi|254780537|r 183 EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGV 262 (294) Q Consensus 183 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294) ++|.++++|++|+||+++|||+++++.+++++.+|||++|+++++.||+++++|||+|++.+++.++.|++++|+++..+ T Consensus 2 k~k~~v~~H~af~Yf~~~ygl~~~~~~~~~~~~eps~~~i~~l~~~ik~~~i~~if~e~~~~~k~~~~ia~~~g~~v~~l 81 (90) T 1xvl_A 2 NQRFLVSCEGAFSYLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARFGGN 81 (90) T ss_dssp GGCEEEEEESTTHHHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEETTSCSHHHHHHHTTTCCEEEEE T ss_pred CCEEEEEECCCHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCCC T ss_conf 55089994441146898679836640266887789988999999987634885899738899199999999859971363 Q ss_pred EECCCCCC Q ss_conf 20123787 Q gi|254780537|r 263 LYVDSLSK 270 (294) Q Consensus 263 ~~~d~l~~ 270 (294) ++++++++ T Consensus 82 ~~~~~~~~ 89 (90) T 1xvl_A 82 LYVDSLST 89 (90) T ss_dssp ECSSCCCC T ss_pred CCCCCCCC T ss_conf 21036888 No 14 >>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis} (A:190-271) Probab=99.72 E-value=2.8e-17 Score=136.49 Aligned_cols=82 Identities=26% Similarity=0.400 Sum_probs=77.3 Q ss_pred CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEE Q ss_conf 73699826652145775297288722688640007899999997620169718998278997999999998299344432 Q gi|254780537|r 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVL 263 (294) Q Consensus 184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~ 263 (294) +|.++++|+||+||+++|||++.++.++++|.+|||++|+++++.||+++|+|||+|++.+++.++.|++++|+++.. T Consensus 1 ~r~~v~~H~af~Yf~~~ygl~~~~~~~~~~~~~ps~~~i~~l~~~ik~~~i~~if~e~~~~~k~~~~ia~~~g~~v~~-- 78 (82) T 2o1e_A 1 KKEFITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGAKTEV-- 78 (82) T ss_dssp CCEEEESSCTTHHHHHHTTCEEEECSSCCSSSCCCHHHHHHHHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCCEEEC-- T ss_pred CCEEEEECCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCEEE-- T ss_conf 641588521366688746844764023565222133579999987652588689994888949999999971997655-- Q ss_pred ECCCC Q ss_conf 01237 Q gi|254780537|r 264 YVDSL 268 (294) Q Consensus 264 ~~d~l 268 (294) +|+| T Consensus 79 -ldpl 82 (82) T 2o1e_A 79 -LNTL 82 (82) T ss_dssp -CCCT T ss_pred -ECCC T ss_conf -4565 No 15 >>1pq4_A Periplasmic binding protein component of AN ABC type zinc uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} (A:189-270) Probab=99.70 E-value=7.5e-17 Score=133.66 Aligned_cols=81 Identities=20% Similarity=0.356 Sum_probs=75.3 Q ss_pred CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEE Q ss_conf 73699826652145775297288722688640007899999997620169718998278997999999998299344432 Q gi|254780537|r 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVL 263 (294) Q Consensus 184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~ 263 (294) +|.++++|+||+||+++|||++.++.. ++.+|||++|+++++.||+++|++||+|++.+++.++.|++++|+++.. T Consensus 2 ~r~~v~~H~af~Y~a~~ygl~~~~~i~--~~~eps~~~i~~l~~~ik~~~i~~if~e~~~~~k~~~~ia~etg~~~~~-- 77 (82) T 1pq4_A 2 QRKFIVFHPSWAYFARDYNLVQIPIEV--EGQEPSAQELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGVEL-- 77 (82) T ss_dssp CCEEEESSCCCHHHHHHTTCEEEESCB--TTBCCCHHHHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEEEE-- T ss_pred CCCEEECCCHHHHHHHHCCCCEEECCC--CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCEEE-- T ss_conf 773120274089999967993520446--7889998999999999997499889972899919999999980998798-- Q ss_pred ECCCCC Q ss_conf 012378 Q gi|254780537|r 264 YVDSLS 269 (294) Q Consensus 264 ~~d~l~ 269 (294) +|+|+ T Consensus 78 -ld~l~ 82 (82) T 1pq4_A 78 -LDPLA 82 (82) T ss_dssp -ECTTC T ss_pred -ECCCC T ss_conf -78872 No 16 >>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae} (A:177-261) Probab=99.70 E-value=2.9e-17 Score=136.42 Aligned_cols=84 Identities=27% Similarity=0.427 Sum_probs=78.7 Q ss_pred CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEE Q ss_conf 73699826652145775297288722688640007899999997620169718998278997999999998299344432 Q gi|254780537|r 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVL 263 (294) Q Consensus 184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~ 263 (294) +|.++++|+||+||+++|||++.++.+++++.+|||++|+++++.+|+++|+|||.|++.+++.++.|++++|+++.. T Consensus 1 ~r~~v~~H~af~Y~~~~ygl~~~~~~~~~~~~~ps~~~i~~~~~~ik~~~i~~If~e~~~~~k~~~~ia~e~g~~~~~-- 78 (85) T 3cx3_A 1 QKTFVTQHTAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLKT-- 78 (85) T ss_dssp CCCEEEEESCCHHHHHHTTCCEEEEECSSTTCCCCSHHHHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEEE-- T ss_pred CCEEEEECCCCCHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHCCCCEEE-- T ss_conf 531899667520268865966875046676445225689999987524675599984889919999999980998688-- Q ss_pred ECCCCCC Q ss_conf 0123787 Q gi|254780537|r 264 YVDSLSK 270 (294) Q Consensus 264 ~~d~l~~ 270 (294) +|+|.. T Consensus 79 -ldpl~~ 84 (85) T 3cx3_A 79 -LNPLES 84 (85) T ss_dssp -CCCSSS T ss_pred -ECCCCC T ss_conf -577767 No 17 >>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, binary complex; HET: GDP; 2.40A {Mycobacterium smegmatis str} PDB: 2gej_A* (A:198-366) Probab=84.02 E-value=2.4 Score=22.26 Aligned_cols=99 Identities=13% Similarity=0.057 Sum_probs=63.0 Q ss_pred CCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 12022712457760378999988761068999997423557521112374202221001233463011122135678999 Q gi|254780537|r 58 HSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYI 137 (294) Q Consensus 58 H~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a 137 (294) |.|.+.......+..+|+++......|++-...++....+..+|....+.......+ ..-.+..++.+...++ T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~lEama~G~pvi~~~~~~~~~~~~~-------~~~g~~~~~~d~~~~~ 143 (169) T 2gek_A 71 LGQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVVASDLDAFRRVLAD-------GDAGRLVPVDDADGMA 143 (169) T ss_dssp CCSCCHHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEEECCCHHHHHHHTT-------TTSSEECCTTCHHHHH T ss_pred EEECCCCHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCCCHHHHHCC-------CCEEEEECCCCHHHHH T ss_conf 740233101110123322222223435675400221136841998289976887307-------9639997799999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999998643188899999989986301 Q gi|254780537|r 138 ENIRKALTALDPSNAKKYELNAREYSEK 165 (294) Q Consensus 138 ~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 165 (294) +.|...+ .+|+......+|+.++.++ T Consensus 144 ~~i~~l~--~~~~~~~~~~~~a~~~~~k 169 (169) T 2gek_A 144 AALIGIL--EDDQLRAGYVARASERVHR 169 (169) T ss_dssp HHHHHHH--HCHHHHHHHHHHHHHHGGG T ss_pred HHHHHHH--CCHHHHHHHHHHHHHHHHH T ss_conf 9999997--6999999999999999996 No 18 >>1yya_A Triosephosphate isomerase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus HB8} (A:) Probab=83.16 E-value=3.4 Score=21.23 Aligned_cols=75 Identities=12% Similarity=0.226 Sum_probs=54.1 Q ss_pred HHHHHHHHHHCCCCC--CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----------CCE Q ss_conf 337899886307844--7369982665214577529728872268864000789999999762016-----------971 Q gi|254780537|r 169 SILPLKTRIEKVDPE--KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-----------KIK 235 (294) Q Consensus 169 l~~~~~~~~~~~p~~--~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-----------~v~ 235 (294) +...++..+..++.. ++.+++|.|.| .+..+.-+|+.++.++...||+. +++ T Consensus 142 ~~~Ql~~~l~~i~~~~~~~~iIAYEPvw---------------AIGtg~~as~~~i~~~~~~Ir~~l~~~~~~~~a~~i~ 206 (250) T 1yya_A 142 TLRQLRGSLEGVEPPGPEALVIAYEPVW---------------AIGTGKNATPEDAEAMHQAIRKALSERYGEAFASRVR 206 (250) T ss_dssp HHHHHHHHTTTCCCSSGGGCEEEECCGG---------------GSSSSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTCE T ss_pred HHHHHHCCCCCHHHHHCCCEEEEECCEE---------------ECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC T ss_conf 6777630132110221145288734333---------------0157877770667777889999999761264537774 Q ss_pred EEEEECCCCHHHHHHHHHHHCCCE Q ss_conf 899827899799999999829934 Q gi|254780537|r 236 FIFSESTNSDQPAKQVAYETNASY 259 (294) Q Consensus 236 ~if~e~~~~~~~~~~ia~e~~~~~ 259 (294) .+ +-...++.-+..++...++.- T Consensus 207 Il-YGGSV~~~n~~~l~~~~~iDG 229 (250) T 1yya_A 207 IL-YGGSVNPKNFADLLSMPNVDG 229 (250) T ss_dssp EE-EESSCCTTTHHHHHTSTTCCE T ss_pred EE-ECCCCCHHHHHHHHCCCCCCE T ss_conf 89-727889879999847789886 No 19 >>3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washington, NIH, niaid, structural genomics; 1.55A {Cryptosporidium parvum iowa II} (A:) Probab=77.55 E-value=5.1 Score=20.01 Aligned_cols=93 Identities=13% Similarity=0.152 Sum_probs=63.5 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-----------CCCEEE Q ss_conf 337899886307844736998266521457752972887226886400078999999976201-----------697189 Q gi|254780537|r 169 SILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS-----------HKIKFI 237 (294) Q Consensus 169 l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~-----------~~v~~i 237 (294) +...++..+..++..++.+|+|.|.| .+..+..+|+.++.++.++|++ .++++| T Consensus 166 v~~Ql~~~~~~~~~~~~ivIAYEPvW---------------AIGtg~~as~~~i~~v~~~Ir~~l~~~~~~~~~~~v~il 230 (271) T 3krs_A 166 IQKQLTEALKDVSDLSNLVIAYEPIW---------------AIGTGVVATPGQAQEAHAFIREYVTRMYNPQVSSNLRII 230 (271) T ss_dssp HHHHHHHHTTTCCCCTTEEEEECCGG---------------GSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHCCEE T ss_pred HHHHHHHHHCCCCCCCEEEEEECCHH---------------HCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCEE T ss_conf 77767653035356650899965244---------------216786676310024688999999876073132676388 Q ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHH Q ss_conf 98278997999999998299344432012378777886899999999 Q gi|254780537|r 238 FSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRF 284 (294) Q Consensus 238 f~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~ 284 (294) +....++.-+..++.+.++.-+ ++-.-+| ..+|.++++. T Consensus 231 -YGGSV~~~N~~~l~~~~~iDG~-LVG~asl------~~~f~~Ii~~ 269 (271) T 3krs_A 231 -YGGSVTPDNCNELIKCADIDGF-LVGGASL------KPTFAKIIES 269 (271) T ss_dssp -ECSCCCTTTHHHHHHSTTCCEE-EESGGGG------STTHHHHHHH T ss_pred -ECCCCCHHHHHHHHCCCCCCEE-EEECHHC------CHHHHHHHHH T ss_conf -6589898799999657898978-9510547------9899999995 No 20 >>1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} (A:) Probab=77.21 E-value=5.2 Score=19.95 Aligned_cols=192 Identities=15% Similarity=0.184 Sum_probs=100.9 Q ss_pred EEEECHHHHHHHHHHCCCEEEEEE--EECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 999752899999985189148999--626889801202271245776037899998876106899999742355752111 Q gi|254780537|r 26 VLSSFSIIGDITQNIAKDLVTVTT--LVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITV 103 (294) Q Consensus 26 Vv~s~~pl~~iv~~I~gd~v~V~~--li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~ 103 (294) +++--+++-..+++..+..+.+.+ +-+.+..+++=|.+|..++.+.=.-+++ | .-|.... T Consensus 40 viaP~~~~l~~~~~~~~~~i~igAQnv~~~~~Ga~TGeiS~~mL~d~G~~~vii--G-HSERR~~--------------- 101 (248) T 1o5x_A 40 VVFPVSVHYDHTRKLLQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVII--G-HFERRKY--------------- 101 (248) T ss_dssp EEECCGGGHHHHHHHSCTTSEEEESCCCSSCSBSCTTCCCHHHHHHTTCCEEEE--C-CHHHHHH--------------- T ss_pred EEECCHHHHHHHHHHHCCCCCEEEHHHHHHCCCCCCCCCCHHHHHHCCCCEEEE--C-CHHHHHH--------------- T ss_conf 998983899999998547751540101311477763515699999759989997--5-4676643--------------- Q ss_pred CCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC Q ss_conf 237420222100123346301112213567899999999986431--888999999899863014553378998863078 Q gi|254780537|r 104 TDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALD--PSNAKKYELNAREYSEKIRNSILPLKTRIEKVD 181 (294) Q Consensus 104 ~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~d--P~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p 181 (294) .++ .|-...+++...+...|.-.. -+..+. ++.....+-+...++..+.... T Consensus 102 ---------------f~E------td~~i~~Kv~~al~~gl~~IvCvGE~~~~-----r~~~~~~~~~~~q~~~~l~~~~ 155 (248) T 1o5x_A 102 ---------------FHE------TDEDVREKLQASLKNNLKAVVCFGESLEQ-----REQNKTIEVITKQVKAFVDLID 155 (248) T ss_dssp ---------------SCC------CHHHHHHHHHHHHHTTCEEEEEECCCHHH-----HHTTCHHHHHHHHHHTTGGGCC T ss_pred ---------------CCC------CHHHHHHHHHHHHHCCCEEEEEECCCCCC-----CCCCCHHHHHHHHHHHHHHCCC T ss_conf ---------------499------70899999999998799799995675212-----2246543799999998860335 Q ss_pred CCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----------CCEEEEEECCCCHHHHHH Q ss_conf 447369982665214577529728872268864000789999999762016-----------971899827899799999 Q gi|254780537|r 182 PEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-----------KIKFIFSESTNSDQPAKQ 250 (294) Q Consensus 182 ~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-----------~v~~if~e~~~~~~~~~~ 250 (294) ..++.+++|.|.| .+..+..+|+.++.++.++||+. +++.+ +....++.-+.. T Consensus 156 ~~~~~vIAYEPvw---------------AIGtg~~as~~~i~~v~~~Ir~~l~~~~~~~~~~~i~il-YGGsV~~~N~~~ 219 (248) T 1o5x_A 156 NFDNVILVYEPLW---------------AIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRIL-YGGSVNTENCSS 219 (248) T ss_dssp CTTSEEEEECCGG---------------GSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEE-ECSCCCTTTHHH T ss_pred CCCEEEEEECCEE---------------EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE-ECCCCCHHHHHH T ss_conf 6011899967676---------------426899899899999999999999986135443775099-648989889999 Q ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHH Q ss_conf 9998299344432012378777886899999999 Q gi|254780537|r 251 VAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRF 284 (294) Q Consensus 251 ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~ 284 (294) +....++.-. +.-.-+| ..+|.++++. T Consensus 220 l~~~~~iDG~-LvG~asl------~~~f~~ii~~ 246 (248) T 1o5x_A 220 LIQQEDIDGF-LVGNASL------KESFVDIIKS 246 (248) T ss_dssp HHTSTTCCEE-EECGGGG------STTHHHHHHH T ss_pred HHCCCCCCEE-EEECHHC------CHHHHHHHHH T ss_conf 8567898979-9622307------9899999998 No 21 >>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} (A:228-444) Probab=76.76 E-value=4.7 Score=20.24 Aligned_cols=95 Identities=7% Similarity=-0.099 Sum_probs=57.3 Q ss_pred HHHH-HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH Q ss_conf 1245-77603789999887610689999974235575211123-742022210012334630111221356789999999 Q gi|254780537|r 64 SADA-IKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTD-GINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIR 141 (294) Q Consensus 64 p~d~-~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~-~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~ 141 (294) ..++ ..++.||+++... ..|++-..+++....+..+|.... +........ ...-.++.+|.+...++++|. T Consensus 115 ~~~~~~~~~~adv~v~ps-~~e~~~~~~~Eama~G~Pvi~~~~~~~~~~~~~~------~~~~g~~v~~~d~~~~a~~i~ 187 (217) T 1uqt_A 115 RKLLMKIFRYSDVGLVTP-LRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAAN------ELTSALIVNPYDRDEVAAALD 187 (217) T ss_dssp HHHHHHHHHHCSEEEECC-SSBSCCHHHHHHHHHSCTTSCCEEEEETTBGGGG------TCTTSEEECTTCHHHHHHHHH T ss_pred HHHHHHHHCCCEEEEECC-CCCCCCCHHHHHHHCCCCCCCCCEEEECCCCCHH------HHCCEEEECCCCHHHHHHHHH T ss_conf 887642100025999687-5346781899999808988896189847978478------848808989799999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCH Q ss_conf 9986431888999999899863014 Q gi|254780537|r 142 KALTALDPSNAKKYELNAREYSEKI 166 (294) Q Consensus 142 ~~L~~~dP~~~~~y~~N~~~~~~~l 166 (294) +.| ..+++......+|+..+.++. T Consensus 188 ~~l-~~~~~~~~~~~~~~~~~~~~~ 211 (217) T 1uqt_A 188 RAL-TMSLAERISRHAEMLDVIVKN 211 (217) T ss_dssp HHH-TCCHHHHHHHHHHHHHHHHHT T ss_pred HHH-CCCHHHHHHHHHHHHHHHHHC T ss_conf 998-399999999999999999977 No 22 >>1m1n_A Nitrogenase molybdenum-iron protein alpha chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} (A:1-55,A:299-491) Probab=76.69 E-value=5.4 Score=19.86 Aligned_cols=148 Identities=12% Similarity=0.051 Sum_probs=83.6 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCC----CHHHHHHCC Q ss_conf 2135678999999999864318889999-99899863014553378998863078447369982665----214577529 Q gi|254780537|r 128 MSLTNAMIYIENIRKALTALDPSNAKKY-ELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGC----LVYLAEDFG 202 (294) Q Consensus 128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y-~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~a----f~Y~~~~yG 202 (294) +-+.........|++.+-.-.|+..+.+ .+....+...+ ..++..+. .+|.+|..... +..|.+++| T Consensus 56 iG~~~T~~~Lr~Ia~~fg~~i~~~~E~~Ia~e~~~~~~~l----~~~~~~l~----Gkrv~I~~~~~~~~~~~~~l~ELG 127 (248) T 1m1n_A 56 FGPTKTIESLRAIAAKFDESIQKKCEEVIAKYKPEWEAVV----AKYRPRLE----GKRVMLYIGGLRPRHVIGAYEDLG 127 (248) T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHT----TCEEEECBSSSHHHHTHHHHHTTT T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHC----CCEEEEECCCHHHHHHHHHHHHCC T ss_conf 7336899999999998588506789999999999999999----99998717----983677368511799999999879 Q ss_pred CEEEEECCCCCCCC--------------C-CHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCC Q ss_conf 72887226886400--------------0-78999999976201697189982789979999999982993444320123 Q gi|254780537|r 203 FKSLYLWPINSDSE--------------R-SPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDS 267 (294) Q Consensus 203 l~~~~~~~~~~~~e--------------p-s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~ 267 (294) ++++++.......+ . -..+..++.+.|++.+...+|. +..-+.+++..|++.......|- T Consensus 128 m~vv~~~~~~~~~~~~~~~~~~l~~~~~i~dd~d~~E~~~~i~~~~PDLi~g-----~~~ek~~a~k~giP~~~~~~~d~ 202 (248) T 1m1n_A 128 MEVVGTGYEFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVKRIKPDLIGS-----GIKEKFIFQKMGIPFREMHSWDY 202 (248) T ss_dssp CEEEEEEESSCCHHHHHTTTTTSCTTCEEEESCBHHHHHHHHHHHCCSEEEE-----CHHHHHHHHHTTCCEEESSSGGG T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCEEEE-----CCCHHHHHHHCCCCEEECCCCCC T ss_conf 9799997057877899999986799878973899999999998539999998-----98407999982999700776546 Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHC Q ss_conf 78777886899999999999998620 Q gi|254780537|r 268 LSKPDGPAPTYLDLLRFSLTKIVDTL 293 (294) Q Consensus 268 l~~~~~~~~~Y~~~m~~N~~~l~~aL 293 (294) .+. --+|-+. ..-++.|..+| T Consensus 203 ~~p----y~Gy~Ga-~~la~~i~~al 223 (248) T 1m1n_A 203 SGP----YHGFDGF-AIFARDMDMTL 223 (248) T ss_dssp CCC----CSHHHHH-HHHHHHHHHHH T ss_pred CCC----CCCHHHH-HHHHHHHHHHH T ss_conf 888----5358669-99999999997 No 23 >>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} (A:) Probab=76.67 E-value=5.1 Score=19.99 Aligned_cols=75 Identities=12% Similarity=0.132 Sum_probs=53.7 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-----------CCCEEE Q ss_conf 337899886307844736998266521457752972887226886400078999999976201-----------697189 Q gi|254780537|r 169 SILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS-----------HKIKFI 237 (294) Q Consensus 169 l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~-----------~~v~~i 237 (294) +...++..+...+..++.+++|.|.| .+.++..+|+.++.++.+.||+ .+++.+ T Consensus 142 ~~~q~~~~~~~~~~~~~~vIAYEPvW---------------AIGtg~~as~e~i~~v~~~Ir~~l~~~~~~~~a~~v~il 206 (247) T 1ney_A 142 VERQLNAVLEEVKDFTNVVVAYEPVX---------------AIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRIL 206 (247) T ss_dssp HHHHHHHHHHHCCCCTTEEEEECCGG---------------GTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEE T ss_pred HHHHHHHHHHHCCCCCCEEEEECCEE---------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCCEEE T ss_conf 99999999730423462699746630---------------457899999899999999999999986043014676089 Q ss_pred EEECCCCHHHHHHHHHHHCCCE Q ss_conf 9827899799999999829934 Q gi|254780537|r 238 FSESTNSDQPAKQVAYETNASY 259 (294) Q Consensus 238 f~e~~~~~~~~~~ia~e~~~~~ 259 (294) +....++.-+..+....++.- T Consensus 207 -YGGSV~~~N~~~l~~~~~iDG 227 (247) T 1ney_A 207 -YGGSANGSNAVTFKDKADVDG 227 (247) T ss_dssp -EESSCCTTTGGGGTTCTTCCE T ss_pred -ECCCCCHHHHHHHHCCCCCCE T ss_conf -648889879999956779995 No 24 >>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthase, two rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} PDB: 2bis_A* (A:227-414) Probab=75.08 E-value=4.2 Score=20.59 Aligned_cols=87 Identities=16% Similarity=0.137 Sum_probs=52.5 Q ss_pred HHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC-CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 776037899998876106899999742355752111237-4202221001233463011122135678999999999864 Q gi|254780537|r 68 IKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDG-INPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTA 146 (294) Q Consensus 68 ~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~-i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~ 146 (294) .-++.||+++... ..|++-..+++....+..+|...-+ +..+- ....-+|.+|.+...++++|.+.| + T Consensus 100 ~~~~~adi~i~~s-~~e~~~~~l~Ea~a~G~pvI~s~~~~~~~~i---------~~~~g~~~~~~d~~~la~~i~~~l-~ 168 (188) T 3fro_A 100 ELYGSVDFVIIPS-YFEPFGLVALEAMCLGAIPIASAVGGLRDII---------TNETGILVKAGDPGELANAILKAL-E 168 (188) T ss_dssp HHHTTCSEEEECB-SCCSSCHHHHHHHHTTCEEEEESSTHHHHHC---------CTTTCEEECTTCHHHHHHHHHHHH-H T ss_pred HHHHHHCCCCCCC-CCCCCCHHHHHHHHCCCCEEEECCCCCHHHE---------ECCCEEEECCCCHHHHHHHHHHHH-H T ss_conf 9876203354445-4556437999999869989993899817607---------889589977999999999999998-3 Q ss_pred HHHHHHHHHHHHHHHHHCC Q ss_conf 3188899999989986301 Q gi|254780537|r 147 LDPSNAKKYELNAREYSEK 165 (294) Q Consensus 147 ~dP~~~~~y~~N~~~~~~~ 165 (294) .+|+....+.+|+.++..+ T Consensus 169 ~~~~~~~~~~~~a~~~~~~ 187 (188) T 3fro_A 169 LSRSDLSKFRENCKKRAMS 187 (188) T ss_dssp HTTTTTHHHHHHHHHHHHT T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 7999999999999999996 No 25 >>2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 1ml1_A 2wsr_A 2v2h_A 2v2d_A 1dkw_A 2vei_A 2vek_A* 2vel_A ... (A:) Probab=74.46 E-value=6.1 Score=19.48 Aligned_cols=91 Identities=13% Similarity=0.235 Sum_probs=60.1 Q ss_pred HHHHHHHHCCCCC--CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-----------CCCEEE Q ss_conf 7899886307844--736998266521457752972887226886400078999999976201-----------697189 Q gi|254780537|r 171 LPLKTRIEKVDPE--KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS-----------HKIKFI 237 (294) Q Consensus 171 ~~~~~~~~~~p~~--~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~-----------~~v~~i 237 (294) ..++..+..++.. ++.+|+|.|.| .+.++..+|+.++.++...||+ .+++++ T Consensus 145 ~ql~~~l~~i~~~~~~~~iIAYEPvw---------------AIGtg~~as~~~i~~~~~~Ir~~~~~~~~~~~~~~v~il 209 (250) T 2j27_A 145 TQIAAIAKKLKKADWAKVVIAYEAVW---------------AIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRIL 209 (250) T ss_dssp HHHHHHHHTCCGGGGGGEEEEEECGG---------------GTTSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEE T ss_pred HHHHHHHHHHHHHHHCCEEEEECCEE---------------ECCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCEE T ss_conf 87754200023443114156504123---------------126554455055677778899999985132133777489 Q ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHH Q ss_conf 98278997999999998299344432012378777886899999999 Q gi|254780537|r 238 FSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRF 284 (294) Q Consensus 238 f~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~ 284 (294) +....++.-+..++...++.-. +.-.-+| ...|.++++. T Consensus 210 -YGGSV~~~N~~~l~~~~~vDG~-LvG~asl------~~~f~~Ii~~ 248 (250) T 2j27_A 210 -YGGSVNGKNARTLYQQRDVNGF-LVGGASL------KPEFVDIIKA 248 (250) T ss_dssp -EESSCCTTTHHHHHTSTTCCEE-EESGGGG------STTHHHHHHT T ss_pred -ECCCCCHHHHHHHHCCCCCCEE-EECHHHC------CHHHHHHHHH T ss_conf -7189898799999668899978-9522647------8799999996 No 26 >>3gvg_A Triosephosphate isomerase; cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.55A {Mycobacterium tuberculosis} (A:) Probab=73.97 E-value=6.3 Score=19.40 Aligned_cols=94 Identities=9% Similarity=0.133 Sum_probs=59.4 Q ss_pred HHHHHHHHCCCCC--CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-----------CCCEEE Q ss_conf 7899886307844--736998266521457752972887226886400078999999976201-----------697189 Q gi|254780537|r 171 LPLKTRIEKVDPE--KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS-----------HKIKFI 237 (294) Q Consensus 171 ~~~~~~~~~~p~~--~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~-----------~~v~~i 237 (294) +.++..+..++.. ++.+++|.|.| .+..+..+|+.++.++.++||+ .+++++ T Consensus 172 ~Ql~~~l~~i~~~~~~~iiIAYEPvW---------------AIGtg~~as~e~i~~v~~~IR~~l~~~~~~~~~~~v~Il 236 (283) T 3gvg_A 172 EQLRGSLAGLLAEQIGSVVIAYEPVW---------------AIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVL 236 (283) T ss_dssp HHHHHHTTTCCHHHHTTCEEEECCGG---------------GSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHTTCCEE T ss_pred HHHHHHHHCCCCCCCCEEEEEECCEE---------------CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCEE T ss_conf 98997762033345532899953410---------------236666687688899999999999875175342777588 Q ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHH Q ss_conf 9827899799999999829934443201237877788689999999999 Q gi|254780537|r 238 FSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSL 286 (294) Q Consensus 238 f~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~ 286 (294) +....++.-+..++...++.-. + +|...-..++|.++++.-. T Consensus 237 -YGGSV~~~N~~~l~~~~~iDG~-L-----VG~asl~~~~f~~Ii~~~~ 278 (283) T 3gvg_A 237 -YGGSVNAKNVGDIVAQDDVDGG-L-----VGGASLDGEHFATLAAIAA 278 (283) T ss_dssp -ECSCCCTTTHHHHHTSTTCCEE-E-----ECGGGGSHHHHHHHHHHHH T ss_pred -ECCCCCHHHHHHHHCCCCCCEE-E-----ECHHHCCHHHHHHHHHHHC T ss_conf -5089798799999567898868-8-----3056579899999999970 No 27 >>1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} (A:) Probab=73.93 E-value=6.3 Score=19.39 Aligned_cols=94 Identities=12% Similarity=0.140 Sum_probs=63.0 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----------CCEEE Q ss_conf 3378998863078447369982665214577529728872268864000789999999762016-----------97189 Q gi|254780537|r 169 SILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-----------KIKFI 237 (294) Q Consensus 169 l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-----------~v~~i 237 (294) +...+...+...+..++.+++|.|.| .+..+..+|+.++.++.++|++. +++++ T Consensus 162 ~~~Ql~~~~~~~~~~~~~vIAYEPvW---------------AIGtg~~as~~~i~~v~~~IR~~l~~~~~~~~~~~v~Il 226 (275) T 1mo0_A 162 NFRQLQAIVDKGVSWENIVIAYEPVW---------------AIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRII 226 (275) T ss_dssp HHHHHHHHHTTTCCSTTEEEEECCGG---------------GTTTSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEE T ss_pred HHHHHHHHHCCCCCCCCEEEEECCEE---------------ECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCCCEE T ss_conf 99999998523555455178867654---------------037899999999999999999999986087661876489 Q ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHH Q ss_conf 982789979999999982993444320123787778868999999999 Q gi|254780537|r 238 FSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFS 285 (294) Q Consensus 238 f~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N 285 (294) +....++.-+..++...++.-. ++-.-+| ..+++++++.- T Consensus 227 -YGGSV~~~N~~~l~~~~~iDG~-LVG~asl------~~ef~~ii~~~ 266 (275) T 1mo0_A 227 -YGGSVTADNAAELGKKPDIDGF-LVGGASL------KPDFVKIINAR 266 (275) T ss_dssp -EESSCCTTTHHHHTTSTTCCEE-EESGGGG------STHHHHHHHHH T ss_pred -ECCCCCHHHHHHHHCCCCCCEE-EEEHHHC------CHHHHHHHHHH T ss_conf -6488898799998568898869-9403756------86699999999 No 28 >>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha JMP134} (A:1-161) Probab=73.36 E-value=6.5 Score=19.30 Aligned_cols=93 Identities=10% Similarity=0.060 Sum_probs=57.7 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCC---EEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE-CCCCHH Q ss_conf 789988630784473699826652145775297---2887226886400078999999976201697189982-789979 Q gi|254780537|r 171 LPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGF---KSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE-STNSDQ 246 (294) Q Consensus 171 ~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl---~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e-~~~~~~ 246 (294) .++...++..+.++-.+++....++++.+.... ..+... ..-+.+|+..++.++.+.+++.++.+|+.= ....-. T Consensus 25 ~~l~~~l~~~~~~~~liv~~~~~~~~~~~~~~~l~~~~i~~~-~~~~~~~~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D 103 (161) T 3jzd_A 25 SQVAAEVERLGAKRALVLCTPNQQAEAERIADLLGPLSAGVY-AGAVXHVPIESARDATARAREAGADCAVAVGGGSTTG 103 (161) T ss_dssp GGHHHHHHHTTCSCEEEECCGGGHHHHHHHHHHHGGGEEEEE-CCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHHHHH T ss_pred HHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCCEEE-ECCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCC T ss_conf 999999997399869999817655049999998613771899-4521398989999999875314897898427855443 Q ss_pred HHHHHHHHHCCCEEEEEE Q ss_conf 999999982993444320 Q gi|254780537|r 247 PAKQVAYETNASYGGVLY 264 (294) Q Consensus 247 ~~~~ia~e~~~~~~~~~~ 264 (294) .++.+|-..+.+.+.+.+ T Consensus 104 ~aK~~a~~~~~p~i~vpT 121 (161) T 3jzd_A 104 LGKAIALETGXPIVAIPT 121 (161) T ss_dssp HHHHHHHHHCCCEEEEEC T ss_pred HHHHHHHCCCCEEEEECC T ss_conf 443101121220576413 No 29 >>1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} (A:) Probab=72.69 E-value=4.7 Score=20.27 Aligned_cols=92 Identities=13% Similarity=0.121 Sum_probs=57.7 Q ss_pred HHHHHHHHCCCC--CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----------CCEEE Q ss_conf 789988630784--47369982665214577529728872268864000789999999762016-----------97189 Q gi|254780537|r 171 LPLKTRIEKVDP--EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-----------KIKFI 237 (294) Q Consensus 171 ~~~~~~~~~~p~--~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-----------~v~~i 237 (294) +.++..+..++. .++.+++|.|.|. +.++..+++.++.++.+.|++- +++ | T Consensus 152 ~Ql~~~l~~v~~~~~~~~iIAYEPvwA---------------IGtg~~a~~~~i~~~~~~IR~~l~~~~~~~~~~~v~-i 215 (261) T 1m6j_A 152 AQLKAINNAISKEAWKNIILAYEPVWA---------------IGTGKTATPDQAQEVHQYIRKWMTENISKEVAEATR-I 215 (261) T ss_dssp HHHHHHHHHSCTGGGGGEEEEECCGGG---------------SSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSC-E T ss_pred HHHHHHHCCCCHHHHCCCEEEECCEEE---------------ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC-E T ss_conf 999998717987773474577565662---------------168999999999999999999998750254517773-8 Q ss_pred EEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHH Q ss_conf 98278997999999998299344432012378777886899999999 Q gi|254780537|r 238 FSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRF 284 (294) Q Consensus 238 f~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~ 284 (294) ++-...++..+..+....++.-. +.-.-+| ..++|.++++. T Consensus 216 lYGGsV~~~n~~~l~~~~~vDG~-LvG~asl-----~~~~f~~ii~~ 256 (261) T 1m6j_A 216 QYGGSVNPANCNELAKKADIDGF-LVGGASL-----DAAKFKTIINS 256 (261) T ss_dssp EECSCCCTTTHHHHHTSTTCCEE-EESGGGG-----SHHHHHHHHGG T ss_pred EECCCCCHHHHHHHHCCCCCCEE-EEEHHHC-----CHHHHHHHHHH T ss_conf 85388898799998567898848-8305656-----88999999999 No 30 >>2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} (A:) Probab=71.51 E-value=7.2 Score=19.02 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=54.1 Q ss_pred HHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----------CCEEEEE Q ss_conf 78998863078447369982665214577529728872268864000789999999762016-----------9718998 Q gi|254780537|r 171 LPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-----------KIKFIFS 239 (294) Q Consensus 171 ~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-----------~v~~if~ 239 (294) ......+..++..++.+|+|.|.|. +..+..+|+.++.++.+.|++. +++++ + T Consensus 144 ~q~~~~~~~~~~~~~~iIAYEPvwA---------------IGtg~~as~~~i~~v~~~Ir~~l~~~~~~~~~~~v~Il-Y 207 (259) T 2i9e_A 144 RQTKAIAAKVNDWSNVVIAYEPVWA---------------IGTGKTATPQQAQDVHKALRQWICENIDAKVGNSIRIQ-Y 207 (259) T ss_dssp HHHHHHHHHCSCCTTEEEEECCGGG---------------TTSSSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEE-E T ss_pred HHHHHHHCCCCCCCCEEEEECCHHH---------------HCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHCCCCCEE-E T ss_conf 7776530222344567998564775---------------05676666145677888999888630145453678688-6 Q ss_pred ECCCCHHHHHHHHHHHCCCE Q ss_conf 27899799999999829934 Q gi|254780537|r 240 ESTNSDQPAKQVAYETNASY 259 (294) Q Consensus 240 e~~~~~~~~~~ia~e~~~~~ 259 (294) -...++.-+..+....++.- T Consensus 208 GGSV~~~n~~~l~~~~~vDG 227 (259) T 2i9e_A 208 GGSVTAANCKELASQPDIDG 227 (259) T ss_dssp CSCCCTTTHHHHHTSTTCCE T ss_pred CCCCCHHHHHHHHCCCCCCE T ss_conf 17877716999956779896 No 31 >>1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} (A:) Probab=70.86 E-value=7.4 Score=18.93 Aligned_cols=85 Identities=8% Similarity=0.083 Sum_probs=56.3 Q ss_pred CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC----------CCCEEEEEECCCCHHHHHHHH Q ss_conf 4736998266521457752972887226886400078999999976201----------697189982789979999999 Q gi|254780537|r 183 EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS----------HKIKFIFSESTNSDQPAKQVA 252 (294) Q Consensus 183 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~----------~~v~~if~e~~~~~~~~~~ia 252 (294) .++.++.|.|.| .+..+..+++.++.++...|++ .+++ |++....++..+..++ T Consensus 159 ~~~~iIAYEPvw---------------aIGtg~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~v~-ilYGGsV~~~n~~~l~ 222 (255) T 1tre_A 159 FEGAVIAYEPVW---------------AIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVI-IQYGGSVNASNAAELF 222 (255) T ss_dssp GTTCEEEECCGG---------------GSSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCE-EEECSCCCTTTHHHHH T ss_pred HCCCEEEECHHH---------------HCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHCCCEE-EEECCCCCHHHHHHHH T ss_conf 246256642333---------------205554667520134668888888512333338602-9854877887999996 Q ss_pred HHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH Q ss_conf 9829934443201237877788689999999999999 Q gi|254780537|r 253 YETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKI 289 (294) Q Consensus 253 ~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l 289 (294) .+.++.-. +. |...-..+++.++++.-.+.+ T Consensus 223 ~~~~iDG~-Lv-----G~asl~~~~f~~ii~~~~~~~ 253 (255) T 1tre_A 223 AQPDIDGA-LV-----GGASLKADAFAVIVKAAEAAK 253 (255) T ss_dssp TSTTCCEE-EE-----SGGGGCHHHHHHHHHHHHHHH T ss_pred CCCCCCEE-EE-----CHHHCCHHHHHHHHHHHHHHH T ss_conf 67799879-95-----356568889999999999751 No 32 >>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} (A:1-160) Probab=70.14 E-value=7.7 Score=18.82 Aligned_cols=88 Identities=10% Similarity=0.034 Sum_probs=59.0 Q ss_pred HHHCCCCCCCEEEEECCCCHHHHHHC-CCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHH Q ss_conf 86307844736998266521457752-97288722688640007899999997620169718998-27899799999999 Q gi|254780537|r 176 RIEKVDPEKRWFVTSEGCLVYLAEDF-GFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFS-ESTNSDQPAKQVAY 253 (294) Q Consensus 176 ~~~~~p~~~~~~v~~H~af~Y~~~~y-Gl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~-e~~~~~~~~~~ia~ 253 (294) .+.....++..+++....++++.+-. .|+..++.. .-+.+|+-.++.++.+.+++.++.+|+. -....-..++.+|. T Consensus 31 ~~~~~g~~~~liitd~~~~~~~~~v~~~l~~~~i~~-~~~~~~~~~~v~~~~~~~~~~~~D~iiaiGGGs~~D~aK~~A~ 109 (160) T 3iv7_A 31 EVERRGSAKVXVIAGEREXSIAHKVASEIEVAIWHD-EVVXHVPIEVAERARAVATDNEIDLLVCVGGGSTIGLAKAIAX 109 (160) T ss_dssp HHHHHTCSSEEEECCGGGHHHHHHHTTTSCCSEEEC-CCCTTCBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHH T ss_pred HHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCEEEC-CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHH T ss_conf 999759975999908427769999999710018976-7427979999999999986317988999346644226667553 Q ss_pred HHCCCEEEEEE Q ss_conf 82993444320 Q gi|254780537|r 254 ETNASYGGVLY 264 (294) Q Consensus 254 e~~~~~~~~~~ 264 (294) ..+.++..+.+ T Consensus 110 ~~~~p~i~~pT 120 (160) T 3iv7_A 110 TTALPIVAIPT 120 (160) T ss_dssp HHCCCEEEEEC T ss_pred HCCCCCEECCC T ss_conf 03455210032 No 33 >>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} (A:174-357) Probab=68.87 E-value=8.1 Score=18.65 Aligned_cols=93 Identities=17% Similarity=0.122 Sum_probs=57.6 Q ss_pred HHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 24577603789999887610689999974235575211123742022210012334630111221356789999999998 Q gi|254780537|r 65 ADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKAL 144 (294) Q Consensus 65 ~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L 144 (294) ....-++.||+++.. ...|++-..+++....+..+|....+.......+ +.+-.++.+|.+...++++|...+ T Consensus 90 ~~~~~~~~ad~~v~~-~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e~v~~------~~~g~~~~~~~~~~~~~~~i~~l~ 162 (184) T 2iw1_A 90 DVSELMAAADLLLHP-AYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIAD------ANCGTVIAEPFSQEQLNEVLRKAL 162 (184) T ss_dssp CHHHHHHHCSEEEEC-CSCCSSCHHHHHHHHHTCCEEEETTSTTTHHHHH------HTCEEEECSSCCHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCC-CCCCCCCCEEEECCCCCEEEEECCCCCHHHHHCC------CCCEEEECCCCCHHHHHHHHHHHH T ss_conf 444222333344432-2223433023310035604661489975888416------982699869999999999999997 Q ss_pred HHHHHHHHHHHHHHHHHHHCCH Q ss_conf 6431888999999899863014 Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKI 166 (294) Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l 166 (294) .+|+....+.+|+.++.++. T Consensus 163 --~~~~~~~~~~~~a~~~~~~~ 182 (184) T 2iw1_A 163 --TQSPLRMAWAENARHYADTQ 182 (184) T ss_dssp --HCHHHHHHHHHHHHHHHHHS T ss_pred --CCHHHHHHHHHHHHHHHHHC T ss_conf --69999999999999999973 No 34 >>2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} (A:) Probab=68.12 E-value=8.4 Score=18.55 Aligned_cols=193 Identities=9% Similarity=0.097 Sum_probs=100.3 Q ss_pred CCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCC Q ss_conf 18914899962688980120227124577603789999887610689999974235575211123742022210012334 Q gi|254780537|r 41 AKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDS 120 (294) Q Consensus 41 ~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~ 120 (294) ..+.++|. +.||- +|- ..-.+.+.+..+.+..|.-.-.--.+.+++..-+-.++-=|+ -....+ T Consensus 34 ~~~~v~v~-i~P~~--~~L----~~~~~~~~q~~~~~gag~~TGeiS~~mLkd~g~~~viiGHSE---------RR~~f~ 97 (244) T 2v5b_A 34 FDHDVQCV-VAPTF--LHI----PMTKARLTNPKFQIAAQNAGNADALASLKDYGISWVVLGHSE---------RRLYYG 97 (244) T ss_dssp CCSCCEEE-EEECG--GGH----HHHHHHCCCTTEEEEESCCCCHHHHHHHHHTTCCEEEECCHH---------HHHHSC T ss_pred CCCCCEEE-ECCCC--CCH----HHHHHHHHCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCHH---------HHHHHC T ss_conf 67882599-77970--049----999987503660120002432156888987652243223311---------012105 Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCC--CCEEEEECCCCHH Q ss_conf 6301112213567899999999986431--88899999989986301455337899886307844--7369982665214 Q gi|254780537|r 121 EPNPHAWMSLTNAMIYIENIRKALTALD--PSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPE--KRWFVTSEGCLVY 196 (294) Q Consensus 121 ~~dpH~Wldp~~~~~~a~~I~~~L~~~d--P~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~--~~~~v~~H~af~Y 196 (294) +. |-.-..+...++...|.-+. .+..+.++++ ...+-+...++..+..++.. ++.+++|.|.|. T Consensus 98 Et------~~~i~~Kv~~al~~gl~pIvCiGE~~~~r~~~-----~~~~~l~~Ql~~~l~~i~~~~~~~~vIAYEPvwa- 165 (244) T 2v5b_A 98 ET------NEIVAEKVAQAXAAGFHVIVCVGETNEEREAG-----RTAAVVLTQLAAVAQKLSKEAWSRVVIAYEPVWA- 165 (244) T ss_dssp CC------HHHHHHHHHHHHHTTCEEEEEECCCHHHHHTT-----CHHHHHHHHHHHHHTTCCTGGGGGEEEEECCHHH- T ss_pred CC------HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCC-----CHHHHHHHHHHHHHHCCCCCCCCCCEEEECCHHC- T ss_conf 30------78999999999852870589854631101235-----1777777766665522331134561687353211- Q ss_pred HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----------CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEEC Q ss_conf 577529728872268864000789999999762016-----------971899827899799999999829934443201 Q gi|254780537|r 197 LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-----------KIKFIFSESTNSDQPAKQVAYETNASYGGVLYV 265 (294) Q Consensus 197 ~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-----------~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~ 265 (294) +..+..||+.++.++.+.||+. ++++ ++....++.-+..++...++.-. ++-. T Consensus 166 --------------IGtg~~as~~~i~~~~~~Ir~~~~~~~~~~~~~~v~i-lYGGsV~~~N~~~~~~~~~vDG~-LvG~ 229 (244) T 2v5b_A 166 --------------IGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRI-LYGGSVTAKNARTLYQMRDINGF-LVGG 229 (244) T ss_dssp --------------HSSSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEE-EECSCCCHHHHHHHHTSTTCCEE-EESG T ss_pred --------------CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCE-EECCCCCHHHHHHHHCCCCCCEE-EECH T ss_conf --------------3445455630233457899999987417433577528-97388887499999678899968-9531 Q ss_pred CCCCCCCCCCCCHHHHHH Q ss_conf 237877788689999999 Q gi|254780537|r 266 DSLSKPDGPAPTYLDLLR 283 (294) Q Consensus 266 d~l~~~~~~~~~Y~~~m~ 283 (294) -+| ...|+++++ T Consensus 230 asl------~~~f~~Ii~ 241 (244) T 2v5b_A 230 ASL------KPEFVEIIE 241 (244) T ss_dssp GGS------STTHHHHHH T ss_pred HHC------CHHHHHHHH T ss_conf 646------889999999 No 35 >>2a3n_A Putative glucosamine-fructose-6-phosphate aminotransferase; 16423107, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Salmonella typhimurium LT2} (A:1-192) Probab=67.01 E-value=8.8 Score=18.40 Aligned_cols=80 Identities=9% Similarity=0.044 Sum_probs=33.7 Q ss_pred CCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH--HHHHHCCCE Q ss_conf 447369982665214577529728872268864000789999999762016971899827899799999--999829934 Q gi|254780537|r 182 PEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQ--VAYETNASY 259 (294) Q Consensus 182 ~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~--ia~e~~~~~ 259 (294) ..++.++.....-...++.+.....-+-+......+....+......++++.+-.+|.-+..++...+. .+++.|+++ T Consensus 53 ~a~~i~i~G~G~S~~~a~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~sg~s~~~~~~~~~ak~~g~~i 132 (192) T 2a3n_A 53 GFSSLFFASVGGSLAPXXAINEFAKELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDTKESVAIAEWCKAQGIRV 132 (192) T ss_dssp CCSCEEEEECGGGHHHHHHHHHHHHHHCCSCEEEEEHHHHHHHCCTTCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEE T ss_pred CCCEEEEEECHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH T ss_conf 99979999711789999999999999859986998416754458887899997999968999767999999998630121 Q ss_pred EE Q ss_conf 44 Q gi|254780537|r 260 GG 261 (294) Q Consensus 260 ~~ 261 (294) +. T Consensus 133 I~ 134 (192) T 2a3n_A 133 VA 134 (192) T ss_dssp EE T ss_pred EE T ss_conf 13 No 36 >>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Pyrococcus horikoshii OT3} (A:104-204) Probab=66.84 E-value=3.6 Score=21.03 Aligned_cols=84 Identities=5% Similarity=-0.103 Sum_probs=55.0 Q ss_pred HHCCCCCCCEEEEECCCC----HHHHHHCCCEEEEECCCCCC----CCCCHHHHHHHHHHHCCCCCEEEEEEC-CC-CHH Q ss_conf 630784473699826652----14577529728872268864----000789999999762016971899827-89-979 Q gi|254780537|r 177 IEKVDPEKRWFVTSEGCL----VYLAEDFGFKSLYLWPINSD----SERSPSMMRHAINQMRSHKIKFIFSES-TN-SDQ 246 (294) Q Consensus 177 ~~~~p~~~~~~v~~H~af----~Y~~~~yGl~~~~~~~~~~~----~eps~~~l~~~~~~ik~~~v~~if~e~-~~-~~~ 246 (294) ++.+-.++-.+++|-+.. .-+.+++|+++....+..-+ ...++.++.+....+.+.+..+||.-- +. .-. T Consensus 7 l~~l~~~ri~V~py~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~adai~l~Ct~l~~~~ 86 (101) T 2eq5_A 7 LALAYGRRVGVLNLTEETPKVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMSTIG 86 (101) T ss_dssp HHHTTCSSEEEECSSSCCCHHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHHHHT T ss_pred HHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHH T ss_conf 99972786356650462699999999874010134402210012457889999999999998669988998068720255 Q ss_pred HHHHHHHHHCCCEE Q ss_conf 99999998299344 Q gi|254780537|r 247 PAKQVAYETNASYG 260 (294) Q Consensus 247 ~~~~ia~e~~~~~~ 260 (294) .++.|.+++|+|++ T Consensus 87 ~~~~Le~~lgvPVi 100 (101) T 2eq5_A 87 IAPVLEEEVGIPVI 100 (101) T ss_dssp CHHHHHHHHSSCEE T ss_pred HHHHHHHCCCCEEE T ss_conf 58988435898698 No 37 >>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} (A:) Probab=66.68 E-value=9 Score=18.36 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=29.1 Q ss_pred HHHHHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEE Q ss_conf 899999997620169718-99827899799999999829934443 Q gi|254780537|r 219 PSMMRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGV 262 (294) Q Consensus 219 ~~~l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294) ...|+.+++.+++.+|++ +|.+| ....++. |+++|++.+++ T Consensus 113 ~~~L~~~i~~l~~~gI~VSLFidP--~~~qi~~-A~~~GAd~VEL 154 (243) T 1m5w_A 113 RDKMRDACKRLADAGIQVSLFIDA--DEEQIKA-AAEVGAPFIEI 154 (243) T ss_dssp HHHHHHHHHHHHHTTCEEEEEECS--CHHHHHH-HHHTTCSEEEE T ss_pred HHHHHHHHHHHHHCCCEEEEEECC--CHHHHHH-HHHCCCCEEEE T ss_conf 889999999998659707998368--8899999-99709995751 No 38 >>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} (A:) Probab=65.12 E-value=9.6 Score=18.16 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=32.0 Q ss_pred HHHHHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEE Q ss_conf 899999997620169718-99827899799999999829934443 Q gi|254780537|r 219 PSMMRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGV 262 (294) Q Consensus 219 ~~~l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~ 262 (294) ...|+.+++.+|+.+|++ +|.+| ....++. |+++|+..+++ T Consensus 141 ~~~L~~~i~~Lk~~gIrVSLFiDP--~~~qi~~-A~~~GAd~VEL 182 (278) T 3gk0_A 141 FDAVRAACKQLADAGVRVSLFIDP--DEAQIRA-AHETGAPVIEL 182 (278) T ss_dssp HHHHHHHHHHHHHTTCEEEEEECS--CHHHHHH-HHHHTCSEEEE T ss_pred HHHHHHHHHHHHHCCCCEEEEECC--CHHHHHH-HHHHCCCEEEE T ss_conf 878999999998728727999645--3144778-77616676765 No 39 >>1nri_A Hypothetical protein HI0754; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.90A {Haemophilus influenzae} (A:1-233) Probab=64.81 E-value=9.7 Score=18.13 Aligned_cols=127 Identities=8% Similarity=0.016 Sum_probs=57.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHH------ Q ss_conf 11221356789999999998643188899999989986301455337899886307844736998266521457------ Q gi|254780537|r 125 HAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLA------ 198 (294) Q Consensus 125 H~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~------ 198 (294) +.+.++.+...+.+.+.+.....- + +.+. .++...+.++...+.+...++.++..+..-.+.+ T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~----~----~~~~---~~~~~~~~~~~~~~~i~~a~~I~i~G~G~S~~~A~~~~~~ 92 (233) T 1nri_A 24 SVDIDRQSTLEIVRLXNEEDKLVP----L----AIES---CLPQISLAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASE 92 (233) T ss_dssp GTTGGGSCHHHHHHHHHHHHTHHH----H----HHHH---HHHHHHHHHHHHHHHHHTTCCEEEEESHHHHHHHHHHHHH T ss_pred CCCCCCCCHHHHHHHHHHHHHHHH----H----HHHH---HHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH T ss_conf 798100899999999998659999----9----9999---8999999999999999739979998176569999999998 Q ss_pred --HHCCCEEEEE-------------CCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH--HHHHHHCCCEEE Q ss_conf --7529728872-------------26886400078999999976201697189982789979999--999982993444 Q gi|254780537|r 199 --EDFGFKSLYL-------------WPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAK--QVAYETNASYGG 261 (294) Q Consensus 199 --~~yGl~~~~~-------------~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~--~ia~e~~~~~~~ 261 (294) +.+++....+ .+...+..........-...++++.+-.++.-+..++...+ ..+++-|++++. T Consensus 93 l~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~dlvI~iS~sG~t~~~~~~~~~ak~~g~~vI~ 172 (233) T 1nri_A 93 CPPTFGVSTEXVKGIIAGGECAIRHPVEGAEDNTKAVLNDLQSIHFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTIS 172 (233) T ss_dssp HHHHHCCCTTSEEEEETTCTHHHHSCCTTGGGCTTHHHHHHHHTTCCTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEE T ss_pred HCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEE T ss_conf 64867888211068771698787665440135488899999983489888489986899977789899998751662566 Q ss_pred E Q ss_conf 3 Q gi|254780537|r 262 V 262 (294) Q Consensus 262 ~ 262 (294) + T Consensus 173 I 173 (233) T 1nri_A 173 I 173 (233) T ss_dssp E T ss_pred E T ss_conf 6 No 40 >>1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} (A:) Probab=61.48 E-value=11 Score=17.73 Aligned_cols=75 Identities=12% Similarity=0.174 Sum_probs=55.2 Q ss_pred HHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-----------CCCEEE Q ss_conf 337899886307844736998266521457752972887226886400078999999976201-----------697189 Q gi|254780537|r 169 SILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS-----------HKIKFI 237 (294) Q Consensus 169 l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~-----------~~v~~i 237 (294) +.......+...+..++.+++|.|.| .+..+..+|+.++.++.+.||+ .+++++ T Consensus 143 ~~~q~~~~~~~~~~~~~~iIAYEPvw---------------AIGtg~~as~~~i~~~~~~Ir~~l~~~~~~~~~~~i~il 207 (248) T 1r2r_A 143 VFEQTKVIADNVKDWSKVVLAYEPVW---------------AIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRII 207 (248) T ss_dssp HHHHHHHHHHTCSCGGGEEEEECCGG---------------GSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEE T ss_pred HHHHHHHHHCCCCCCCEEEEEECCEE---------------ECCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCEE T ss_conf 99999987425653234899746686---------------127899998499999999999999974227663865299 Q ss_pred EEECCCCHHHHHHHHHHHCCCE Q ss_conf 9827899799999999829934 Q gi|254780537|r 238 FSESTNSDQPAKQVAYETNASY 259 (294) Q Consensus 238 f~e~~~~~~~~~~ia~e~~~~~ 259 (294) +....++.-+..++...++.- T Consensus 208 -YGGSV~~~n~~~~~~~~~vDG 228 (248) T 1r2r_A 208 -YGGSVTGATCKELASQPDVDG 228 (248) T ss_dssp -ECSCCCTTTHHHHHTSTTCCE T ss_pred -ECCCCCHHHHHHHHCCCCCCE T ss_conf -768989769999956789897 No 41 >>2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} (A:) Probab=61.15 E-value=11 Score=17.69 Aligned_cols=176 Identities=13% Similarity=0.125 Sum_probs=90.0 Q ss_pred CEEEEECHHHHHHHHHHCCCEEEEEE--EECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC Q ss_conf 28999752899999985189148999--6268898012022712457760378999988761068999997423557521 Q gi|254780537|r 24 KVVLSSFSIIGDITQNIAKDLVTVTT--LVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKII 101 (294) Q Consensus 24 ~~Vv~s~~pl~~iv~~I~gd~v~V~~--li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i 101 (294) .-|..++.-|..+.+.+.+..+.|-. +-+....|++=|.||+.++.+.=.-+++ | .-|.... T Consensus 37 v~i~P~~~~L~~~~~~~~~~~i~igAQnv~~~~~Ga~TGEvS~~~Lkd~G~~~vii--G-HSERR~~------------- 100 (252) T 2btm_A 37 SVVCAPFLFLDRLVQAADGTDLKIGAQTMHFADQGAYTGEVSPVMLKDLGVTYVIL--G-HSERRQM------------- 100 (252) T ss_dssp EEEEECGGGHHHHHHHHTTSSEEEEESCCCSSSSBSCTTCCCHHHHHHHTCCEEEE--S-CHHHHHH------------- T ss_pred EEEECCHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHCCCCHHHHHHHCCCEEEC--C-CCCHHHH------------- T ss_conf 99979989999999987314521001343001341322243899998708530101--3-5201234------------- Q ss_pred CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHC Q ss_conf 11237420222100123346301112213567899999999986431--8889999998998630145533789988630 Q gi|254780537|r 102 TVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALD--PSNAKKYELNAREYSEKIRNSILPLKTRIEK 179 (294) Q Consensus 102 ~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~d--P~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~ 179 (294) .++ .|-.-.+++..++...|.-+. -+..+..+. ....+-+...++..+.. T Consensus 101 -----------------f~E------t~~~i~~Kv~~al~~gl~pIlCvGE~~e~r~~-----~~~~~~~~~Ql~~~l~~ 152 (252) T 2btm_A 101 -----------------FAE------TDETVNKKVLAAFTRGLIPIICCGESLEEREA-----GQTNAVVASQVEKALAG 152 (252) T ss_dssp -----------------SCC------CHHHHHHHHHHHHHHTCEEEEEECCCHHHHHT-----TCHHHHHHHHHHHHHTT T ss_pred -----------------HCC------CHHHHHHHHHHHHCCCCEEEEEEECCCCCCCC-----CHHHHHHHHHHHHHHCC T ss_conf -----------------323------27888999998652897489997034311121-----01146788887765414 Q ss_pred CC--CCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-----------CCCEEEEEECCCCHH Q ss_conf 78--44736998266521457752972887226886400078999999976201-----------697189982789979 Q gi|254780537|r 180 VD--PEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS-----------HKIKFIFSESTNSDQ 246 (294) Q Consensus 180 ~p--~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~-----------~~v~~if~e~~~~~~ 246 (294) ++ ..++.+++|.|.| .+..+..+|+.++.++...|++ .+++. ++-...++. T Consensus 153 v~~~~~~~ivIAYEPvW---------------AIGtg~~as~e~i~~~~~~Ir~~l~~~~~~~~~~~v~I-lYGGSV~~~ 216 (252) T 2btm_A 153 LTPEQVKQAVIAYEPIW---------------AIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRI-QYGGSVKPD 216 (252) T ss_dssp CCHHHHTTCEEEECCGG---------------GTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEE-EEESSCCTT T ss_pred CCHHCCCEEEEEECCEE---------------CCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCE-EECCCCCHH T ss_conf 31110231899973111---------------13555678826665567889988875316334066858-751897987 Q ss_pred HHHHHHHHHCCCE Q ss_conf 9999999829934 Q gi|254780537|r 247 PAKQVAYETNASY 259 (294) Q Consensus 247 ~~~~ia~e~~~~~ 259 (294) -+..++...++.- T Consensus 217 n~~~l~~~~~vDG 229 (252) T 2btm_A 217 NIRDFLAQQQIDG 229 (252) T ss_dssp THHHHHTSTTCCE T ss_pred HHHHHHCCCCCCE T ss_conf 9999966889987 No 42 >>2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, PGH; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* (A:) Probab=58.79 E-value=12 Score=17.42 Aligned_cols=73 Identities=10% Similarity=0.085 Sum_probs=52.4 Q ss_pred HHHHHHHHCCC--CCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-----------CCCEEE Q ss_conf 78998863078--44736998266521457752972887226886400078999999976201-----------697189 Q gi|254780537|r 171 LPLKTRIEKVD--PEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS-----------HKIKFI 237 (294) Q Consensus 171 ~~~~~~~~~~p--~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~-----------~~v~~i 237 (294) +.++..+..++ ..++.+|+|.|.| .+..+..+|+.++.++.+.|++ .+++++ T Consensus 146 ~Ql~~~l~~i~~~~~~~~vIAYEPvW---------------AIGtg~~as~~~i~~v~~~Ir~~l~~~~~~~~~~~v~il 210 (251) T 2vxn_A 146 SQTSAIAAKLTKDAWNQVVLAYEPVW---------------AIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRIL 210 (251) T ss_dssp HHHHHHHTTCCTGGGGGEEEEECCGG---------------GSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEE T ss_pred HHHHHHHHCCCCHHCCCEEEEECCEE---------------EECCCCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCCEEE T ss_conf 99999875266010254489856577---------------307898899899999999999999876062014762089 Q ss_pred EEECCCCHHHHHHHHHHHCCCE Q ss_conf 9827899799999999829934 Q gi|254780537|r 238 FSESTNSDQPAKQVAYETNASY 259 (294) Q Consensus 238 f~e~~~~~~~~~~ia~e~~~~~ 259 (294) +-...++.-+..++...++.- T Consensus 211 -YGGSV~~~N~~~~~~~~~vDG 231 (251) T 2vxn_A 211 -YGGSVNAANAATLYAKPDING 231 (251) T ss_dssp -EESSCCTTTHHHHHTSTTCCE T ss_pred -ECCCCCHHHHHHHHCCCCCCE T ss_conf -668889889999956889896 No 43 >>3hl0_A Maleylacetate reductase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str} (A:1-159) Probab=55.58 E-value=14 Score=17.07 Aligned_cols=88 Identities=9% Similarity=0.109 Sum_probs=55.9 Q ss_pred HHHHHHHCCCCCCCEEEEECCCCHHHHH------HCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE-CCCC Q ss_conf 8998863078447369982665214577------52972887226886400078999999976201697189982-7899 Q gi|254780537|r 172 PLKTRIEKVDPEKRWFVTSEGCLVYLAE------DFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE-STNS 244 (294) Q Consensus 172 ~~~~~~~~~p~~~~~~v~~H~af~Y~~~------~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e-~~~~ 244 (294) .+-..++..+.++-.+++....++.+.+ +.|+. ... .-+.+|+...+.++.+.+++.+..+|+.= .... T Consensus 24 ~l~~~l~~~g~~~~livtd~~~~~~~~~v~~~l~~~~~~---~~~-~~~~~~~~~~v~~~~~~~~~~~~d~iiaiGGGsv 99 (159) T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQKGDAEALASRLGRLAAG---VFS-EAAXHTPVEVTKTAVEAYRAAGADCVVSLGGGST 99 (159) T ss_dssp GHHHHHHHTTCCCEEEECCGGGHHHHHHHHHHHGGGEEE---EEC-CCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHHH T ss_pred HHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCE---EEE-CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC T ss_conf 999999973998699997842214799999986068828---996-2616999899999999999639988999589751 Q ss_pred HHHHHHHHHHHCCCEEEEE Q ss_conf 7999999998299344432 Q gi|254780537|r 245 DQPAKQVAYETNASYGGVL 263 (294) Q Consensus 245 ~~~~~~ia~e~~~~~~~~~ 263 (294) -..++.+|-..+.+++.+. T Consensus 100 iD~AK~~a~~~~~p~i~~p 118 (159) T 3hl0_A 100 TGLGKAIALRTDAAQIVIP 118 (159) T ss_dssp HHHHHHHHHHHCCEEEEEE T ss_pred HHHHHHHHHCCCCCEEEEE T ss_conf 1011232203678657740 No 44 >>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone, THDP, metal, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* (A:196-343) Probab=53.12 E-value=15 Score=16.82 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=46.7 Q ss_pred CCCCEEEEECH------HHHHHHHHHCCCEEEEEEEECCCC--CCCC-CCCCHHHHHHHCCCCEEEEECCCCCHHHHHHH Q ss_conf 58828999752------899999985189148999626889--8012-02271245776037899998876106899999 Q gi|254780537|r 21 TQKKVVLSSFS------IIGDITQNIAKDLVTVTTLVEAGN--DSHS-YQVTSADAIKIQNADLILCNGLHLEETYMKYF 91 (294) Q Consensus 21 ~~~~~Vv~s~~------pl~~iv~~I~gd~v~V~~li~~g~--dpH~-ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~ 91 (294) ++++.|++--- -+..+++..+..-+. ..+...+. +-|. |--++.-...+.++|+++..|..+-.+..... T Consensus 24 A~rpviv~G~g~~~a~~~l~~lae~~~~pv~~-~~~~~~~~~~~~~~~~~G~~~~~~~~~~aDlvl~iG~~~~~~~~~~~ 102 (148) T 3hww_A 24 QKRGVVVAGRMSAEEGKKVALWAQTLGWPLIG-DVLSQTGQPLPCADLWLGNAKATSELQQAQIVVQLGSSLTGKRLLQW 102 (148) T ss_dssp TSCEEEEECBCCHHHHHHHHHHHHHHTCCEEE-CTTTCSCCSSCCHHHHTTSHHHHHHHTTCSEEEEESBCCCCHHHHHH T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHCCCCEEE-ECCCCCCCCCCCCCHHCCCHHHHHHCCCCEEEEECCCCCCCCCCCCC T ss_conf 88647874034425689998767640476011-02567778764542102787677525762078613666655443333 Q ss_pred HHCCCCCCCCCCCC Q ss_conf 74235575211123 Q gi|254780537|r 92 TNLKKGTKIITVTD 105 (294) Q Consensus 92 ~~~~~~~~~i~~~~ 105 (294) ....++.++|.+.. T Consensus 103 ~~~~~~~~~i~i~~ 116 (148) T 3hww_A 103 QASCEPEEYWIVDD 116 (148) T ss_dssp HHHCCCSEEEEEES T ss_pred CCCCCCCEEEECCC T ss_conf 22478731697058 No 45 >>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial precursor; middle-chain acyl-COA synthetase, xenobiotic/medium-chain fatty acid-COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* (A:76-198) Probab=51.97 E-value=16 Score=16.70 Aligned_cols=114 Identities=15% Similarity=0.031 Sum_probs=60.3 Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEE--CCCCCCCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 863014553378998863078447369982665214577529728872--268864000789999999762016971899 Q gi|254780537|r 161 EYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYL--WPINSDSERSPSMMRHAINQMRSHKIKFIF 238 (294) Q Consensus 161 ~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~--~~~~~~~eps~~~l~~~~~~ik~~~v~~if 238 (294) ++.++...+-..+++.+ .+..+.+..+...+...|+.-.+|.-..+. ..+++ ..++.++. ..+++.+.+++| T Consensus 3 el~~~~~~~a~~L~~~~-gi~~gd~V~i~~~n~~e~~~~~~a~~~~G~v~vpl~~--~~~~~~l~---~~l~~s~~~~ii 76 (123) T 3c5e_A 3 ELSENSQQAANVLSGAC-GLQRGDRVAVVLPRVPEWWLVILGCIRAGLIFMPGTI--QMKSTDIL---YRLQMSKAKAIV 76 (123) T ss_dssp HHHHHHHHHHHHHHTTT-CCCTTCEEEEECCSCHHHHHHHHHHHHHTCEEEECCT--TCCHHHHH---HHHHHHTCSEEE T ss_pred HHHHHHHHHHHHHHHHH-CCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEECCC--CCCHHHHH---HHHHHCCCCEEE T ss_conf 99999999999988800-9799999999928969999999999984919993187--79999999---999851464899 Q ss_pred EECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHH Q ss_conf 8278997999999998299344432012378777886899999999 Q gi|254780537|r 239 SESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRF 284 (294) Q Consensus 239 ~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~ 284 (294) +++..-.+..+...+-...+.. ..++.-.. ....+|-+++.. T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~--i~~~~~~~--~~~~~~~~~~~~ 118 (123) T 3c5e_A 77 AGDEVIQEVDTVASECPSLRIK--LLVSEKSC--DGWLNFKKLLNE 118 (123) T ss_dssp EETTTHHHHHHHGGGCTTCCEE--EEESSSCC--TTSEEHHHHHHH T ss_pred EECCCHHHHCCCCCCCCCCCEE--EECCCCCC--CCCCCCCCCCCC T ss_conf 5011000000001213342101--00012222--222331002222 No 46 >>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen synthase two rossman folds, transferase; 1.8A {Pyrococcus abyssi} (A:) Probab=48.80 E-value=18 Score=16.37 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=46.0 Q ss_pred HCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 60378999988761068999997423557521112374202221001233463011122135678999999999864318 Q gi|254780537|r 70 IQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDP 149 (294) Q Consensus 70 i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP 149 (294) ++.||+++... ..|+|-..+++....+..+|....+.-..-. ..+.-+..++.+...++++|.+.| +.+| T Consensus 113 ~~~a~v~v~~s-~~e~~~~~i~Eama~G~Pvi~s~~~~~~e~i--------~~~~g~~~~~~d~~~la~~i~~~l-~~~~ 182 (200) T 2bfw_A 113 YGSVDFVIIPS-YFEPFGLVALEAMCLGAIPIASAVGGLRDII--------TNETGILVKAGDPGELANAILKAL-ELSR 182 (200) T ss_dssp HTTCSEEEECC-SCCSSCHHHHHHHHTTCEEEEESCHHHHHHC--------CTTTCEEECTTCHHHHHHHHHHHH-HCCH T ss_pred CCCCCCCCCCC-CCCCCCCCCHHHHHCCCEEEECCCCCCHHHC--------CCCCEEEECCCCHHHHHHHHHHHH-HCCH T ss_conf 22323333322-2222332201233148504642787525440--------687225658999999999999999-5799 Q ss_pred HHHHHHHHHHHHHHCCH Q ss_conf 88999999899863014 Q gi|254780537|r 150 SNAKKYELNAREYSEKI 166 (294) Q Consensus 150 ~~~~~y~~N~~~~~~~l 166 (294) +....+.+|+.++.++. T Consensus 183 ~~~~~~~~~~~~~~~~~ 199 (200) T 2bfw_A 183 SDLSKFRENCKKRAMSF 199 (200) T ss_dssp HHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHC T ss_conf 99999999999999847 No 47 >>2dgd_A 223AA long hypothetical arylmalonate decarboxylase; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii} (A:108-202) Probab=46.94 E-value=19 Score=16.18 Aligned_cols=65 Identities=5% Similarity=-0.004 Sum_probs=44.8 Q ss_pred HHHHHCCCEEEEECCCCCC--CC---CCHHHHHHHHHHH--CCCCCEEEEEE--CCCCHHHHHHHHHHHCCCEE Q ss_conf 4577529728872268864--00---0789999999762--01697189982--78997999999998299344 Q gi|254780537|r 196 YLAEDFGFKSLYLWPINSD--SE---RSPSMMRHAINQM--RSHKIKFIFSE--STNSDQPAKQVAYETNASYG 260 (294) Q Consensus 196 Y~~~~yGl~~~~~~~~~~~--~e---ps~~~l~~~~~~i--k~~~v~~if~e--~~~~~~~~~~ia~e~~~~~~ 260 (294) -|.+.-|+++....++.-. .+ .++.++.+....+ ...++..||.. ....-..++.+-+++|.|+. T Consensus 20 ~~~~~~G~eV~~~~~lg~~~~~~ia~i~~~~i~~~~~~~~~d~p~adAi~isCTnl~t~~~i~~lE~~lg~PVi 93 (95) T 2dgd_A 20 EWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKADAVYIACTALSTYEAVQYLHEDLDXPVV 93 (95) T ss_dssp HHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTSSEEEECCTTSCCTTHHHHHHHHHTSCEE T ss_pred HHHHHCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE T ss_conf 99996790585300247565421023999999999998540134687899941586478999999999898999 No 48 >>1aw2_A Triosephosphate isomerase; psychrophilic; 2.65A {Vibrio marinus} (A:) Probab=46.15 E-value=19 Score=16.10 Aligned_cols=83 Identities=8% Similarity=0.051 Sum_probs=53.9 Q ss_pred CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC----------CCCEEEEEECCCCHHHHHHHH Q ss_conf 4736998266521457752972887226886400078999999976201----------697189982789979999999 Q gi|254780537|r 183 EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS----------HKIKFIFSESTNSDQPAKQVA 252 (294) Q Consensus 183 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~----------~~v~~if~e~~~~~~~~~~ia 252 (294) .++.++.|.|.| .+..+..+++.++.++...|++ .+++ |++....++.-...+. T Consensus 161 ~~~~iIAYEPvw---------------aIGtg~~a~~~~i~~v~~~Ir~~l~~~~~~~~~~v~-ilYGGsV~~~n~~~l~ 224 (256) T 1aw2_A 161 LEGAIIAYEPIW---------------AIGTGKAATAEDAQRIHAQIRAHIAEKSEAVAKNVV-IQYGGSVKPENAAAYF 224 (256) T ss_dssp GTTCEEEECCTT---------------TTTSSCCCCHHHHHHHHHHHHHHHHTTCHHHHHHCE-EEECSCCCTTTHHHHT T ss_pred CCCCEEEECCHH---------------CCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEE-EEECCCCCHHHHHHHH T ss_conf 355457765400---------------146776665044567899998887641102367600-8960685885999995 Q ss_pred HHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHH Q ss_conf 98299344432012378777886899999999999 Q gi|254780537|r 253 YETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLT 287 (294) Q Consensus 253 ~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~ 287 (294) ...++.-. + - |...-..+++.++++.-.+ T Consensus 225 ~~~~iDGv-L-v----G~asl~~~~f~~ii~~~~~ 253 (256) T 1aw2_A 225 AQPDIDGA-L-V----GGAALDAKSFAAIAKAAAE 253 (256) T ss_dssp TSTTCCEE-E-E----SGGGGCHHHHHHHHHHHHH T ss_pred CCCCCCEE-E-E----CHHHCCHHHHHHHHHHHHH T ss_conf 67898869-9-5----3676698999999999997 No 49 >>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, enzyme, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} (A:205-389,A:582-616) Probab=46.10 E-value=19 Score=16.10 Aligned_cols=85 Identities=7% Similarity=0.155 Sum_probs=47.2 Q ss_pred CCCCCEEEEEC--------HHHHHHHHHHCCCEEEEE---EEECCCCCCCCC------CCCHHHHHHHCCCCEEEEECCC Q ss_conf 35882899975--------289999998518914899---962688980120------2271245776037899998876 Q gi|254780537|r 20 TTQKKVVLSSF--------SIIGDITQNIAKDLVTVT---TLVEAGNDSHSY------QVTSADAIKIQNADLILCNGLH 82 (294) Q Consensus 20 ~~~~~~Vv~s~--------~pl~~iv~~I~gd~v~V~---~li~~g~dpH~y------e~tp~d~~~i~~Adliv~~G~~ 82 (294) .+++|.|++-- ..+..+++.++-..+... .++| ..+|+.+ -.++.....+++||+|+..|.. T Consensus 21 ~AkrPvIi~G~g~~~~~a~~~l~~Lae~lgiPV~~t~~~kg~~~-~~hP~~~G~~~g~~~~~~~~~~l~~aDlIL~iG~~ 99 (220) T 2pan_A 21 QAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLXGWGCIP-DDHELXAGXVGLQTAHRYGNATLLASDXVFGIGNR 99 (220) T ss_dssp TCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTTTSSC-TTSTTBCCCCSSSSCCHHHHHHHHHCSEEEEESCC T ss_pred CCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEECCC T ss_conf 38982899777501130899999999720787323435567532-33323232234544422344303433113441445 Q ss_pred CCHHHHHHHHHCCCCCCCCCCCC Q ss_conf 10689999974235575211123 Q gi|254780537|r 83 LEETYMKYFTNLKKGTKIITVTD 105 (294) Q Consensus 83 ~E~~~~~~~~~~~~~~~~i~~~~ 105 (294) +-.+............++|.+.. T Consensus 100 l~~~~t~~~~~~~~~~~iI~I~~ 122 (220) T 2pan_A 100 FANRHTGSVEKYTEGRKIVHIDI 122 (220) T ss_dssp CCHHHHSSHHHHHTTCEEEEEES T ss_pred CCCCCCCCCCCCCCCCEEEEEEC T ss_conf 55434322123588981899978 No 50 >>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding; HET: ADP; 2.30A {Agrobacterium tumefaciens} (A:260-459) Probab=44.96 E-value=11 Score=17.88 Aligned_cols=31 Identities=6% Similarity=0.136 Sum_probs=22.1 Q ss_pred EECCCCCCCCCCCCHHHHHHH------CCC--CEEEEEC Q ss_conf 626889801202271245776------037--8999988 Q gi|254780537|r 50 LVEAGNDSHSYQVTSADAIKI------QNA--DLILCNG 80 (294) Q Consensus 50 li~~g~dpH~ye~tp~d~~~i------~~A--dliv~~G 80 (294) ++|+|.|...|.|.+.+.+.+ ... -++++.| T Consensus 1 VIpngvD~~~f~~~~~~~~~~~~~~~~~~~~~~~i~~~G 39 (200) T 1rzu_A 1 LIHDNYSAANLKNRALNKKAVAEHFRIDDDGSPLFCVIS 39 (200) T ss_dssp TSSSCCBTTBCTTHHHHHHHHHHHHTCCCSSSCEEEEES T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC T ss_conf 344331034556654436665320244567972899925 No 51 >>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} (A:199-372) Probab=44.50 E-value=21 Score=15.94 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=44.5 Q ss_pred CCCCEEEEEC------HHHHHHHHHHCCCEEEEEEEECCC----CCCCCC-----CCCHHHHHHHCCCCEEEEECCCCCH Q ss_conf 5882899975------289999998518914899962688----980120-----2271245776037899998876106 Q gi|254780537|r 21 TQKKVVLSSF------SIIGDITQNIAKDLVTVTTLVEAG----NDSHSY-----QVTSADAIKIQNADLILCNGLHLEE 85 (294) Q Consensus 21 ~~~~~Vv~s~------~pl~~iv~~I~gd~v~V~~li~~g----~dpH~y-----e~tp~d~~~i~~Adliv~~G~~~E~ 85 (294) +++|.+++-- .-+..+++.++-.. ++.....| .+|+.. --++.-...+.+||+++..|..+-. T Consensus 16 AkrPvii~G~g~~~a~~~l~~lae~~~~pv--~~t~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlil~iG~~~~~ 93 (174) T 1ybh_A 16 SKKPVLYVGGGCLNSSDELGRFVELTGIPV--ASTLMGLGSYPXDDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDD 93 (174) T ss_dssp CSSEEEEECGGGTTCHHHHHHHHHHHCCCE--EECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCH T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHHCCCE--EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCCCC T ss_conf 799199989862451999999999869899--987424766684001320025776879998652128999996986520 Q ss_pred HHHHHHHHCCCCCCCCCCC Q ss_conf 8999997423557521112 Q gi|254780537|r 86 TYMKYFTNLKKGTKIITVT 104 (294) Q Consensus 86 ~~~~~~~~~~~~~~~i~~~ 104 (294) +.........++.++|.+. T Consensus 94 ~~~~~~~~~~~~~~~I~i~ 112 (174) T 1ybh_A 94 RVTGKLEAFASRAKIVHID 112 (174) T ss_dssp HHHSSGGGTTTTSEEEEEE T ss_pred CCCCCCCCCCCCCEEEEEE T ss_conf 1345322346787189995 No 52 >>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, termination module, phosphopantetheine; 2.6A {Bacillus subtilis} (A:492-598) Probab=44.38 E-value=20 Score=16.06 Aligned_cols=81 Identities=10% Similarity=0.088 Sum_probs=45.6 Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEEC--CCCCCCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 8630145533789988630784473699826652145775297288722--68864000789999999762016971899 Q gi|254780537|r 161 EYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLW--PINSDSERSPSMMRHAINQMRSHKIKFIF 238 (294) Q Consensus 161 ~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~--~~~~~~eps~~~l~~~~~~ik~~~v~~if 238 (294) ++..+...+-..++.. .+..+++..+-.++...|+.-.+|.-..+.. .+++ .-++.++. ..++..+.++|| T Consensus 3 el~~~~~~~a~~L~~~--gi~~g~~V~i~~~n~~~~~~~~~a~~~~G~~~vpl~~--~~~~~~l~---~~~~~~~~~~i~ 75 (107) T 2vsq_A 3 ELDEEANRIARRLQKH--GAGKGSVVALYTKRSLELVIGILGVLKAGAAYLPVDP--KLPEDRIS---YMLADSAAACLL 75 (107) T ss_dssp HHHHHHHHHHHHHHHT--TCCTTCEEEECCCSSHHHHHHHHHHHHTTCEEEECCT--TSCHHHHH---HHHHHHTCCEEE T ss_pred HHHHHHHHHHHHCCCC--CCCCCEEEEEEECCCHHHHHHHHHHHHCCEEECCCCC--CCCHHHHH---HHHHHCCCCEEE T ss_conf 7479988664000014--8765338999623526799999976226802024687--76689999---999844776364 Q ss_pred EECCCCHHHH Q ss_conf 8278997999 Q gi|254780537|r 239 SESTNSDQPA 248 (294) Q Consensus 239 ~e~~~~~~~~ 248 (294) +++..-++.. T Consensus 76 ~~~~~~~~~~ 85 (107) T 2vsq_A 76 THQEMKEQAA 85 (107) T ss_dssp ECSTTCTTST T ss_pred CCHHHHHCCC T ss_conf 1355531123 No 53 >>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, protein structure initiative, PSI, joint center for structural genomics; 2.06A {Thermotoga maritima} (A:28-147) Probab=43.67 E-value=21 Score=15.85 Aligned_cols=71 Identities=14% Similarity=0.030 Sum_probs=52.0 Q ss_pred CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC--------CCCHHHHHHHHHHH Q ss_conf 7369982665214577529728872268864000789999999762016971899827--------89979999999982 Q gi|254780537|r 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSES--------TNSDQPAKQVAYET 255 (294) Q Consensus 184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~--------~~~~~~~~~ia~e~ 255 (294) +-.++++.....||.+..|+.+..+.....+.+| ++.+.|+++.+..|+.=+ ..+...++..|-+. T Consensus 28 G~~l~AT~gTa~~L~~~~gi~v~~v~~~~~~~~~------~i~~~i~~g~i~~VIn~~~~~~~~~~~~dg~~iRR~Av~~ 101 (120) T 1vmd_A 28 KHELYATGTTGALLQEKLGLKVHRLKSGPLGGDQ------QIGAMIAEGKIDVLIFFWDPLEPQAHDVDVKALIRIATVY 101 (120) T ss_dssp TSEEEECHHHHHHHHHHHCCCCEECSCGGGTHHH------HHHHHHHTTSCCEEEEECCSSSCCTTSCCHHHHHHHHHHT T ss_pred CCEEEECCCHHHHHHHHCCCEEEEEECCCCCCCC------CHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH T ss_conf 9759971019999986029648998558776667------8999997699778997777766775654099999999983 Q ss_pred CCCEE Q ss_conf 99344 Q gi|254780537|r 256 NASYG 260 (294) Q Consensus 256 ~~~~~ 260 (294) |++.. T Consensus 102 ~ipl~ 106 (120) T 1vmd_A 102 NIPVA 106 (120) T ss_dssp TCCEE T ss_pred CCCEE T ss_conf 98777 No 54 >>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} (A:) Probab=43.45 E-value=18 Score=16.30 Aligned_cols=21 Identities=5% Similarity=0.078 Sum_probs=11.6 Q ss_pred HHHHHHHHHHHCCCCCEEEEE Q ss_conf 899999997620169718998 Q gi|254780537|r 219 PSMMRHAINQMRSHKIKFIFS 239 (294) Q Consensus 219 ~~~l~~~~~~ik~~~v~~if~ 239 (294) .+.+..+.+.+++.++..|.. T Consensus 37 ~~~~~~l~~li~~~~v~~iVv 57 (98) T 1iv0_A 37 EEDVEALLDFVRREGLGKLVV 57 (98) T ss_dssp HHHHHHHHHHHHHHTCCEEEE T ss_pred HHHHHHHHHHHHHHCCCCEEE T ss_conf 589999999998736250781 No 55 >>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide mutase); acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} (A:) Probab=43.03 E-value=22 Score=15.79 Aligned_cols=31 Identities=6% Similarity=0.063 Sum_probs=15.8 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 037899998876106899999742355752111 Q gi|254780537|r 71 QNADLILCNGLHLEETYMKYFTNLKKGTKIITV 103 (294) Q Consensus 71 ~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~ 103 (294) +++++||.. .|++..+.-.+... -..++|.+ T Consensus 75 ~~~~viIa~-AG~~a~L~gvva~~-t~~PVIgv 105 (182) T 1u11_A 75 RGLNVIIAG-AGGAAHLPGMCAAW-TRLPVLGV 105 (182) T ss_dssp TTCCEEEEE-EESSCCHHHHHHHH-CSSCEEEE T ss_pred CCCEEEEEE-ECCCCCCCCCEEEE-CCCEEEEE T ss_conf 697489986-15888776613431-36527997 No 56 >>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* (A:175-354) Probab=42.26 E-value=22 Score=15.71 Aligned_cols=76 Identities=14% Similarity=0.148 Sum_probs=41.2 Q ss_pred CCCCEEEEECH------HHHHHHHHHCCCEEEEEEEECCC----CCCCC-----CCCCHHHHHHHCCCCEEEEECCCCCH Q ss_conf 58828999752------89999998518914899962688----98012-----02271245776037899998876106 Q gi|254780537|r 21 TQKKVVLSSFS------IIGDITQNIAKDLVTVTTLVEAG----NDSHS-----YQVTSADAIKIQNADLILCNGLHLEE 85 (294) Q Consensus 21 ~~~~~Vv~s~~------pl~~iv~~I~gd~v~V~~li~~g----~dpH~-----ye~tp~d~~~i~~Adliv~~G~~~E~ 85 (294) +.+|.|++--. -+..|++..+-..+ .+....| .+|+. +--++.-...|.+||+++..|..+-. T Consensus 27 Ak~Pvii~G~g~~~a~~~l~~lae~~~~Pv~--~t~~~kg~~~~~~p~~~G~~g~~~~~~~~~~l~~aDlil~iG~~~~~ 104 (180) T 3eya_A 27 SSNIALMCGSGCAGAHKELVEFAGKIKAPIV--HALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLVLLGTQFPY 104 (180) T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHTCCEE--ECGGGHHHHSSSCTTBCCCCSTTSCHHHHHHHHHCSEEEEESCCCCC T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHEEECCCCEEEEEEECCC T ss_conf 4650899446543048999986764148743--23443323456776321223333331001102124423798640365 Q ss_pred HHHHHHHHCCCCCCCCCC Q ss_conf 899999742355752111 Q gi|254780537|r 86 TYMKYFTNLKKGTKIITV 103 (294) Q Consensus 86 ~~~~~~~~~~~~~~~i~~ 103 (294) +. ....+.+++.+ T Consensus 105 ~~-----~~~~~~~~i~i 117 (180) T 3eya_A 105 RA-----FYPTDAKIIQI 117 (180) T ss_dssp GG-----GSCSSSEEEEE T ss_pred CC-----CCCCCCCEEEE T ss_conf 45-----56776718999 No 57 >>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, thiamin thiazolone diphosphate, inhibitor; HET: TZD; 1.00A {Pseudomonas putida} (A:174-341) Probab=42.22 E-value=22 Score=15.71 Aligned_cols=65 Identities=6% Similarity=-0.016 Sum_probs=35.2 Q ss_pred CCCCCEEEEEC--------HHHHHHHHHHCCCEEEEEEEECCCC----CCCC-----CCCCHHHHHHHCCCCEEEEECCC Q ss_conf 35882899975--------2899999985189148999626889----8012-----02271245776037899998876 Q gi|254780537|r 20 TTQKKVVLSSF--------SIIGDITQNIAKDLVTVTTLVEAGN----DSHS-----YQVTSADAIKIQNADLILCNGLH 82 (294) Q Consensus 20 ~~~~~~Vv~s~--------~pl~~iv~~I~gd~v~V~~li~~g~----dpH~-----ye~tp~d~~~i~~Adliv~~G~~ 82 (294) .+++|.|++-- .-+..+++..+-..+ +.....|. +|+. +--++.-...+.+||+++..|.. T Consensus 26 ~AkrPvii~G~~~~~~~a~~~l~~la~~~~~pv~--~t~~~~g~~~~~~~~~~g~~g~~~~~~~~~~~~~aDlil~vG~~ 103 (168) T 1q6z_A 26 SASNPAIVLGPDVDAANANADCVMLAERLKAPVW--VAPSAPRCPFPTRHPCFRGLMPAGIAAISQLLEGHDVVLVIGAP 103 (168) T ss_dssp HCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEE--ECSSCSBCCSCTTSTTEEEECCSCHHHHHHHHTTCSEEEEESSC T ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCE--EECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEECCC T ss_conf 3758736614543012667678999997358702--20234555577778433465223548999998546620232453 Q ss_pred CCHH Q ss_conf 1068 Q gi|254780537|r 83 LEET 86 (294) Q Consensus 83 ~E~~ 86 (294) +..+ T Consensus 104 ~~~~ 107 (168) T 1q6z_A 104 VFRY 107 (168) T ss_dssp TTCC T ss_pred CCCC T ss_conf 3332 No 58 >>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii} (A:58-170) Probab=42.06 E-value=22 Score=15.74 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=43.2 Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEE--CCCCCCCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 863014553378998863078447369982665214577529728872--268864000789999999762016971899 Q gi|254780537|r 161 EYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYL--WPINSDSERSPSMMRHAINQMRSHKIKFIF 238 (294) Q Consensus 161 ~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~--~~~~~~~eps~~~l~~~~~~ik~~~v~~if 238 (294) ++.++...+-..++... + ++++..+..++...++.-.||.-..+. ..+++ ..++.++..++ +..+.++|| T Consensus 3 el~~~~~~ia~~L~~~g--~-~gd~V~i~~~n~~~~~~~~~A~~~~G~~~vpi~~--~~~~~~l~~~l---~~~~~~~ii 74 (113) T 3ite_A 3 KLNETANQVANLIIHAS--L-HGRAIAVSLDRSLIAFAIIVGIXKSGNTYVPIEA--GLPNDRKSFLL---RDSRAAXAF 74 (113) T ss_dssp HHHHHHHHHHHHHHHTT--C-SSCEEEEECCSCHHHHHHHHHHHHTTCEEEECCT--TSCHHHHHHHH---HHHTCSEEE T ss_pred HHHHHHHHHHHHHHHCC--C-CCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECC--CCCHHHHHHHH---HHCCCCEEE T ss_conf 99999999999999779--9-9698999938989999999999996979998688--89999999998---624887999 Q ss_pred EECCCCHH Q ss_conf 82789979 Q gi|254780537|r 239 SESTNSDQ 246 (294) Q Consensus 239 ~e~~~~~~ 246 (294) ++...-++ T Consensus 75 ~~~~~~~~ 82 (113) T 3ite_A 75 VCDNNFDG 82 (113) T ss_dssp ECTTTTTT T ss_pred EECHHHHH T ss_conf 96003221 No 59 >>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} (A:187-356) Probab=41.65 E-value=22 Score=15.67 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=46.6 Q ss_pred CCCCCEEEEEC--------HHHHHHHHHHCCCEEEEEEEECC----CCCCCCCC----------CCHHHHHHHCCCCEEE Q ss_conf 35882899975--------28999999851891489996268----89801202----------2712457760378999 Q gi|254780537|r 20 TTQKKVVLSSF--------SIIGDITQNIAKDLVTVTTLVEA----GNDSHSYQ----------VTSADAIKIQNADLIL 77 (294) Q Consensus 20 ~~~~~~Vv~s~--------~pl~~iv~~I~gd~v~V~~li~~----g~dpH~ye----------~tp~d~~~i~~Adliv 77 (294) .+++|.|++-- ..+..+++..+-.. +++.... ..+|+..- -++.-.+.+.+||+++ T Consensus 29 ~A~rPvii~G~~~~~~~a~~~l~~lae~~~~pv--~~t~~~kg~~~~~~p~~~G~~~~~~~G~~~~~~~~~~l~~aDlil 106 (170) T 2iht_A 29 EAKHPVLVVGAAAIRSGAVPAIRALAERLNIPV--ITTYIAKGVLPVGHELNYGAVTGYXDGILNFPALQTXFAPVDLVL 106 (170) T ss_dssp HCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCE--EECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEE T ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCE--EEEECCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHCCCCCEE T ss_conf 564652013212234323799999999979898--973146654357852455443330113322478998734434300 Q ss_pred EECCCCCHHHHHHHHHCCCCCCCCCCC Q ss_conf 988761068999997423557521112 Q gi|254780537|r 78 CNGLHLEETYMKYFTNLKKGTKIITVT 104 (294) Q Consensus 78 ~~G~~~E~~~~~~~~~~~~~~~~i~~~ 104 (294) ..|..+..+..-......++.++|.+. T Consensus 107 ~iG~~~~~~~~~~~~~~~~~~~~i~i~ 133 (170) T 2iht_A 107 TVGYDYAEDLRPSXWQKGIEKKTVRIS 133 (170) T ss_dssp EETCCGGGCCCHHHHCCSSCCEEEEEE T ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 002453124665422245532100012 No 60 >>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} (A:) Probab=41.01 E-value=23 Score=15.58 Aligned_cols=30 Identities=10% Similarity=0.052 Sum_probs=15.4 Q ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 37899998876106899999742355752111 Q gi|254780537|r 72 NADLILCNGLHLEETYMKYFTNLKKGTKIITV 103 (294) Q Consensus 72 ~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~ 103 (294) ..++||.. .|++..+.-++... -..++|.+ T Consensus 66 ~~~viIa~-AG~~a~Lpgvva~~-t~~PVIgv 95 (170) T 1xmp_A 66 GLKVIIAG-AGGAAHLPGMVAAK-TNLPVIGV 95 (170) T ss_dssp TCCEEEEE-EESSCCHHHHHHTT-CCSCEEEE T ss_pred CCCEEEEE-CCCCCCCCHHHHHH-CCCEEEEE T ss_conf 66279986-15767762277774-55026777 No 61 >>3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, cytoplasm, gluconeogenesis, glycolysis, pentose shunt, structural genomics; 1.60A {Bartonella henselae} (A:) Probab=40.63 E-value=23 Score=15.55 Aligned_cols=77 Identities=6% Similarity=0.054 Sum_probs=55.7 Q ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC----------CCCEEE Q ss_conf 5337899886307844736998266521457752972887226886400078999999976201----------697189 Q gi|254780537|r 168 NSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS----------HKIKFI 237 (294) Q Consensus 168 ~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~----------~~v~~i 237 (294) .+....+..+...+..++.+++|.|.|. +..+.-+++.++.+..+.|++ .++++ T Consensus 167 ~~~~q~~~~~~~~~~~~~~viAyEP~wa---------------IGtg~~a~~~~~~~~~~~Ir~~~~~~~~~~~~~v~I- 230 (275) T 3kxq_A 167 VLTRQLEGSLPDGATAENIIIAYEPVWA---------------VGTGNTATSADVAEVHAFIHHKMHSRFGDEGAKIRL- 230 (275) T ss_dssp HHHHHHHHHSCTTCCTTTEEEEECCCC-----------------------CHHHHHHHHHHHHHHHHHHHHHHHTTSCE- T ss_pred HHHHHHHHHCCCCCCCCCEEEEECCEEC---------------CCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEE- T ss_conf 9999999760466421004897466441---------------268999982999999999999999870212478208- Q ss_pred EEECCCCHHHHHHHHHHHCCCEE Q ss_conf 98278997999999998299344 Q gi|254780537|r 238 FSESTNSDQPAKQVAYETNASYG 260 (294) Q Consensus 238 f~e~~~~~~~~~~ia~e~~~~~~ 260 (294) ++....+......++.+.++.-+ T Consensus 231 lyGGsV~~~n~~~l~~~~gvDGv 253 (275) T 3kxq_A 231 LYGGSVKPSNAFELLSTAHVNGA 253 (275) T ss_dssp EECSCCCTTTHHHHHTSTTCCEE T ss_pred EEECCCCHHHHHHHHCCCCCCEE T ss_conf 97178998699999567798979 No 62 >>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} (B:310-418) Probab=40.36 E-value=24 Score=15.52 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=42.5 Q ss_pred CCEEEEECCC----CHHHHHHCCCEEEEECCCCCCC----------------C---CCHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 7369982665----2145775297288722688640----------------0---078999999976201697189982 Q gi|254780537|r 184 KRWFVTSEGC----LVYLAEDFGFKSLYLWPINSDS----------------E---RSPSMMRHAINQMRSHKIKFIFSE 240 (294) Q Consensus 184 ~~~~v~~H~a----f~Y~~~~yGl~~~~~~~~~~~~----------------e---ps~~~l~~~~~~ik~~~v~~if~e 240 (294) +|.++...+. +.-|.++.|++++.+...++.. + .--.+..++.+.+++.++..++.. T Consensus 4 Krv~i~gd~~~~~~l~~~l~ElGm~vv~~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~~~d~~el~~~i~~~~pDliig~ 83 (109) T 1mio_B 4 KKVALLGDPDEIIALSKFIIELGAIPKYVVTGTPGMKFQKEIDAMLAEAGIEGSKVKVEGDFFDVHQWIKNEGVDLLISN 83 (109) T ss_dssp CEEEEEECHHHHHHHHHHHHTTTCEEEEEEESSCCHHHHHHHHHHHHTTTCCSCEEEESCBHHHHHHHHHHSCCSEEEES T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHCCCCEEEEC T ss_conf 87999888188999999999849901488726897777899999998658988789979999999999974499999979 Q ss_pred CCCCHHHHHHHHHHHCCCEEEE Q ss_conf 7899799999999829934443 Q gi|254780537|r 241 STNSDQPAKQVAYETNASYGGV 262 (294) Q Consensus 241 ~~~~~~~~~~ia~e~~~~~~~~ 262 (294) ..-+.+|+.+|++...+ T Consensus 84 -----s~~~~~a~klgiP~i~i 100 (109) T 1mio_B 84 -----TYGKFIAREENIPFVRF 100 (109) T ss_dssp -----GGGHHHHHHHTCCEEEC T ss_pred -----CHHHHHHHHCCCCEEEE T ss_conf -----45899999829998984 No 63 >>2dp3_A Triosephosphate isomerase; enzyme, alpha/beta barrel; 2.10A {Giardia intestinalis} (A:) Probab=40.14 E-value=24 Score=15.50 Aligned_cols=79 Identities=14% Similarity=0.183 Sum_probs=52.8 Q ss_pred CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----------CCEEEEEECCCCHHHHHHH Q ss_conf 47369982665214577529728872268864000789999999762016-----------9718998278997999999 Q gi|254780537|r 183 EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-----------KIKFIFSESTNSDQPAKQV 251 (294) Q Consensus 183 ~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-----------~v~~if~e~~~~~~~~~~i 251 (294) .++.+|+|.|.| .+..+..+|+.++.++..+|++. +++.+ +-...++.-+..+ T Consensus 162 ~~~~iIAYEPvw---------------AIGtg~~as~e~i~~v~~~Ir~~l~~~~~~~~~~~v~IL-YGGSV~~~n~~~l 225 (257) T 2dp3_A 162 WKEVVIAYEPVW---------------SIGTGVVATPEQAEEVHVGLRKWFVEKVAAEGAQHIRII-YGGSANGSNCEKL 225 (257) T ss_dssp GGGEEEEECCGG---------------GTTTSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEE-EESSCCTTTHHHH T ss_pred CCCEEEEECCCC---------------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEE-ECCCCCHHHHHHH T ss_conf 564799965500---------------135554456133333578999999988777553865489-6088898999998 Q ss_pred HHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHH Q ss_conf 998299344432012378777886899999999 Q gi|254780537|r 252 AYETNASYGGVLYVDSLSKPDGPAPTYLDLLRF 284 (294) Q Consensus 252 a~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~ 284 (294) +...++.-. ++-.-+| ...++++++. T Consensus 226 ~~~~~vDG~-LvG~asl------~~ef~~ii~~ 251 (257) T 2dp3_A 226 GQCPNIDGF-LVGGASL------KPEFMTMIDI 251 (257) T ss_dssp HTSTTCCEE-EESGGGG------STHHHHHHHH T ss_pred HCCCCCCEE-EEEHHHC------CHHHHHHHHH T ss_conf 578899979-9510546------9668999999 No 64 >>2e5f_A Hypothetical protein PH0510; structural genomics, sugar binding protein, NPPSFA; 1.35A {Pyrococcus horikoshii OT3} PDB: 2dec_A* 2df8_A 2cb0_A* (A:12-157) Probab=39.97 E-value=21 Score=15.82 Aligned_cols=86 Identities=10% Similarity=0.002 Sum_probs=48.9 Q ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCCH-------HHHHHCCCEEEEECCCCCCCCCCHHH-HHHHHHHHCCCCCEEE Q ss_conf 455337899886307844736998266521-------45775297288722688640007899-9999976201697189 Q gi|254780537|r 166 IRNSILPLKTRIEKVDPEKRWFVTSEGCLV-------YLAEDFGFKSLYLWPINSDSERSPSM-MRHAINQMRSHKIKFI 237 (294) Q Consensus 166 l~~l~~~~~~~~~~~p~~~~~~v~~H~af~-------Y~~~~yGl~~~~~~~~~~~~eps~~~-l~~~~~~ik~~~v~~i 237 (294) +.++++.++.....+...+|.++..-..-. |+..++|.....+.. +.. .......+.++.+-++ T Consensus 3 ~~~i~~~i~~~~~~i~~a~~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~--------~~~~~~~~~~~~~~~dvvi~ 74 (146) T 2e5f_A 3 IIKADKVFNKVKDKISLPNRILYLGCGSSHFLSKLLAMVTNMHGGLGIALPC--------SEFLYSKETYPIGEVELAVG 74 (146) T ss_dssp HHHHHHHHHHHTTTCCCCSEEEEEESTHHHHHHHHHHHHHHHTTSEEEEEEH--------HHHHHHGGGSCCCSCSEEEE T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEC--------HHHHHCCCCCCCCCCEEEEE T ss_conf 9999999999999856799699998836999999999999996399989967--------88773276676899828999 Q ss_pred EEECCCCHHHHHHHHHHHCCCEE Q ss_conf 98278997999999998299344 Q gi|254780537|r 238 FSESTNSDQPAKQVAYETNASYG 260 (294) Q Consensus 238 f~e~~~~~~~~~~ia~e~~~~~~ 260 (294) +.-+..++...+.+ +..+.++. T Consensus 75 iS~sG~t~~~~~~~-~~a~~~i~ 96 (146) T 2e5f_A 75 ISRSGETTEILLAL-EKINVKKL 96 (146) T ss_dssp ECSSSCCHHHHHHH-HTCCSCEE T ss_pred ECCCCCCHHHHHHH-HHHHHHHC T ss_conf 77899826799999-98555311 No 65 >>1h6q_A TCTP, P23FYP, translationally controlled tumor protein; tumor-associated protein, function unknown; NMR {Schizosaccharomyces pombe} (A:) Probab=39.53 E-value=24 Score=15.43 Aligned_cols=39 Identities=23% Similarity=0.366 Sum_probs=32.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 356789999999998643188899999989986301455 Q gi|254780537|r 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRN 168 (294) Q Consensus 130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~ 168 (294) -...+.+...|.+.|.+..|+.-+.|.+|+..+.+.+.. T Consensus 85 ~~yiK~YmK~i~~~L~e~~perv~~Fk~~a~~~vK~il~ 123 (168) T 1h6q_A 85 MSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKILA 123 (168) T ss_dssp HHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHCCHHHHHHHHH T ss_conf 999999999999998662953278145271889999986 No 66 >>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} (A:1-120) Probab=39.50 E-value=24 Score=15.43 Aligned_cols=22 Identities=14% Similarity=0.197 Sum_probs=16.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHH Q ss_conf 3011122135678999999999 Q gi|254780537|r 122 PNPHAWMSLTNAMIYIENIRKA 143 (294) Q Consensus 122 ~dpH~Wldp~~~~~~a~~I~~~ 143 (294) .+|.+|-||..+..+.+..+.- T Consensus 42 ~~p~fw~d~~~a~~i~ke~~~L 63 (120) T 1gqe_A 42 EQPDVWNEPERAQALGKERSSL 63 (120) T ss_dssp HSGGGGGSHHHHHHHHHHHHHH T ss_pred CCCHHHHCHHHHHHHHHHHHHH T ss_conf 0972454999999999999999 No 67 >>1h0h_A Formate dehydrogenase (large subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} (A:157-272,A:309-408) Probab=39.14 E-value=25 Score=15.39 Aligned_cols=152 Identities=9% Similarity=0.101 Sum_probs=77.0 Q ss_pred HHHHHHHCCCCEEEEECCCCCH----HHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 1245776037899998876106----899999742355752111237420222100123346301112213567899999 Q gi|254780537|r 64 SADAIKIQNADLILCNGLHLEE----TYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIEN 139 (294) Q Consensus 64 p~d~~~i~~Adliv~~G~~~E~----~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~ 139 (294) +.....+.+||++|..|.+... -+..+.+...++.++|.+......... ..|-|+=.-|-.-..++.. T Consensus 20 ~~~~~D~~~a~~ii~~G~n~~~s~p~~~~~~~~a~~~GakvivVdPr~~~ta~--------~AD~wi~irPGtD~al~~a 91 (216) T 1h0h_A 20 TNHWIDLKNSDVILMMGSNPAENHPISFKWVMRAKDKGATLIHVDPRYTRTST--------KCDLYAPLRSGSDIAFLNG 91 (216) T ss_dssp SSCTGGGGGCSEEEEESCCHHHHSTTHHHHHHHHHHTTCEEEEECSSCCTTGG--------GCSEEECCCTTCHHHHHHH T ss_pred CCCHHHHHHCCEEEEECCCHHHHCHHHHHHHHHHHHCCCCEEEEECCCCCHHH--------HHCCCCCCCCCCCHHHHHH T ss_conf 89988997498999989996797979999999998769806897334350777--------5163457689964777631 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHH---CCCEEEEECCCCCCCC Q ss_conf 9999864318889999998998630145533789988630784473699826652145775---2972887226886400 Q gi|254780537|r 140 IRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAED---FGFKSLYLWPINSDSE 216 (294) Q Consensus 140 I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~---yGl~~~~~~~~~~~~e 216 (294) +...+.+.+--.+++.++.. ...-+|.....+--.+-+|+-|.+. |.++.+ ..-.. T Consensus 92 l~~~ii~~~~~d~~fv~~~t----------------~~~~l~~~d~~~~~~~~vf~~~~~~~~~yt~e~~-----~~itG 150 (216) T 1h0h_A 92 MTKYILEKELYFKDYVVNYT----------------NASFIPKRDETLKHPRCVFQIMKKHYERYDLDKI-----SAICG 150 (216) T ss_dssp HHHHHHHTTCSCHHHHHHHB----------------GGGBBBCBCTTSCSTTBHHHHHHHHHTTCCHHHH-----HHHHC T ss_pred HHHHHHHCCCCCHHHHHHHC----------------CCCHHCCCCCCCCCCCCHHHHHHHHHHHCCHHHH-----HHHHC T ss_conf 24367755871589999864----------------7511144333322223289999998762899999-----87608 Q ss_pred CCHHHHHHHHHHHCCCC----CEEEEEECCCC Q ss_conf 07899999997620169----71899827899 Q gi|254780537|r 217 RSPSMMRHAINQMRSHK----IKFIFSESTNS 244 (294) Q Consensus 217 ps~~~l~~~~~~ik~~~----v~~if~e~~~~ 244 (294) .++.+|.++.+.+-+++ -.++++--..+ T Consensus 151 v~~~~i~~lA~~~a~~~~~~k~~~i~~g~G~~ 182 (216) T 1h0h_A 151 TPKELILKVYDAYCATGKPDKAGTIMYAMGWT 182 (216) T ss_dssp CCHHHHHHHHHHHHGGGSTTCCEEEEECCCCS T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCCC T ss_conf 88899999999998635667747998056432 No 68 >>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A* (A:1-351) Probab=38.96 E-value=25 Score=15.38 Aligned_cols=23 Identities=13% Similarity=0.134 Sum_probs=13.7 Q ss_pred CCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 07899999997620169718998 Q gi|254780537|r 217 RSPSMMRHAINQMRSHKIKFIFS 239 (294) Q Consensus 217 ps~~~l~~~~~~ik~~~v~~if~ 239 (294) -|+++|....-.+-..+-.+++. T Consensus 294 ks~~~li~~l~~~v~~~gnlLLN 316 (351) T 2wvv_A 294 KTPIEVIDRIVHAVSMGGNMVVN 316 (351) T ss_dssp CCHHHHHHHHHHHHHTTCEEEEE T ss_pred CCHHHHHHHHHHHHCCCCEEEEE T ss_conf 89999999999973689459996 No 69 >>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} (A:187-366) Probab=38.82 E-value=25 Score=15.36 Aligned_cols=112 Identities=12% Similarity=0.157 Sum_probs=53.4 Q ss_pred CCCCCEEEEEC--------HHHHHHHHHHCCCEEEEEEEECCC----CCCCCCC------CCHHHHHHHCCCCEEEEECC Q ss_conf 35882899975--------289999998518914899962688----9801202------27124577603789999887 Q gi|254780537|r 20 TTQKKVVLSSF--------SIIGDITQNIAKDLVTVTTLVEAG----NDSHSYQ------VTSADAIKIQNADLILCNGL 81 (294) Q Consensus 20 ~~~~~~Vv~s~--------~pl~~iv~~I~gd~v~V~~li~~g----~dpH~ye------~tp~d~~~i~~Adliv~~G~ 81 (294) .+++|.|++-- ..+..+++.++-..+ ++....| .+|+.|- -++.-...+.+||+++..|. T Consensus 20 ~A~rPvii~G~~~~~~~a~~~l~~lae~~g~Pv~--~t~~~kg~~~~~hp~~~~g~~g~~~~~~~~~~i~~aD~il~iG~ 97 (180) T 1ozh_A 20 QAKNPIFLLGLMASQPENSKALRRLLETSHIPVT--STYQAAGAVNQDNFSRFAGRVGLFNNQAGDRLLQLADLVICIGY 97 (180) T ss_dssp HCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEE--ECGGGTTTCCTTTCTTEEEECSSBTTCHHHHHHHHCSEEEEESC T ss_pred HCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCE--ECCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCEEEECCC T ss_conf 5439864578765451668999999986089711--02323676433455434445676564233124650204666376 Q ss_pred CCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 610689999974235575211123742022210012334630111221356789999999998 Q gi|254780537|r 82 HLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKAL 144 (294) Q Consensus 82 ~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L 144 (294) .+-.+... ....+..+++-+...-. ....+...|-++.-|+.. .++.+.+.| T Consensus 98 ~~~~~~~~--~~~~~~~~~i~i~~d~~------~~~~~~~~~~~i~~d~~~---~l~~L~~~l 149 (180) T 1ozh_A 98 SPVEYEPA--MWNSGNATLVHIDVLPA------YEERNYTPDVELVGDIAG---TLNKLAQNI 149 (180) T ss_dssp CGGGSCGG--GTCCSCSEEEEEESSCC------CCBTTBCCSEEEESCHHH---HHHHHHHTC T ss_pred CCCCCCCC--CCCCCCCEEEEEECCHH------HHCCCCCCCEEEECHHHH---HHHHHHHHH T ss_conf 55666765--46788761799843355------423577764355213999---999999986 No 70 >>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli} (A:) Probab=38.34 E-value=25 Score=15.31 Aligned_cols=31 Identities=6% Similarity=0.322 Sum_probs=12.6 Q ss_pred CCEEEEECCCCCHH-HHHHHHHCCCCCCCCCC Q ss_conf 78999988761068-99999742355752111 Q gi|254780537|r 73 ADLILCNGLHLEET-YMKYFTNLKKGTKIITV 103 (294) Q Consensus 73 Adliv~~G~~~E~~-~~~~~~~~~~~~~~i~~ 103 (294) -.++|...+|.++. +..++........++.+ T Consensus 46 ~~v~v~~SGGkDSt~ll~l~~~~~~~~~~~~~ 77 (252) T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIRPDIPVILT 77 (252) T ss_dssp SCEEEECCCSTTHHHHHHHHHHHSTTCEEEEC T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEE T ss_conf 98899933877899999999815899508999 No 71 >>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} (A:) Probab=37.98 E-value=26 Score=15.28 Aligned_cols=108 Identities=10% Similarity=-0.114 Sum_probs=57.6 Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC-------HHHHHHCCCEEEEEC-C-CCCCC---------- Q ss_conf 9998998630145533789988630784473699826652-------145775297288722-6-88640---------- Q gi|254780537|r 155 YELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL-------VYLAEDFGFKSLYLW-P-INSDS---------- 215 (294) Q Consensus 155 y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af-------~Y~~~~yGl~~~~~~-~-~~~~~---------- 215 (294) ++...+.+...++.+...++.....+-..+|.++.....- .|....+|.....+. + ..++. T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~rI~~~G~G~S~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (188) T 1tk9_A 14 HQKIVQASEILKGQIAKVGELLCECLKKGGKILICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGND 93 (188) T ss_dssp HHHHHHHGGGGHHHHHHHHHHHHHHHHTTCCEEEEESTHHHHHHHHHHHHHHSCSSSCCCCCCEEESSCCHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 99999998871999999999999999859989999168874344331434068765554433222567874433212255 Q ss_pred -CCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH--HHHHHHCCCEEEE Q ss_conf -0078999999976201697189982789979999--9999829934443 Q gi|254780537|r 216 -ERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAK--QVAYETNASYGGV 262 (294) Q Consensus 216 -eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~--~ia~e~~~~~~~~ 262 (294) .-...........++++.+-.+|..+..++...+ ..+++.|++++.+ T Consensus 94 ~~~~~~~~~~~~~~~~~~dlvI~~S~sG~t~~~~~~~~~ak~~g~~vI~I 143 (188) T 1tk9_A 94 YGFEFVFSRQVEALGNEKDVLIGISTSGKSPNVLEALKKAKELNXLCLGL 143 (188) T ss_dssp TCGGGHHHHHHHHHCCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEE T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHEEEEEEEE T ss_conf 79999999999983799998999818988831576567777424148998 No 72 >>2iv2_X Formate dehydrogenase H; oxidoreductase, 4Fe-4S, anaerobic, complete proteome, direct protein sequencing, Fe4S4, iron, iron sulfur cluster; HET: 2MD MGD; 2.27A {Escherichia coli} (X:152-335,X:532-565) Probab=37.92 E-value=26 Score=15.27 Aligned_cols=162 Identities=15% Similarity=0.110 Sum_probs=90.0 Q ss_pred HHHHHHHCCCCEEEEECCCCC-H---HHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 124577603789999887610-6---899999742355752111237420222100123346301112213567899999 Q gi|254780537|r 64 SADAIKIQNADLILCNGLHLE-E---TYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIEN 139 (294) Q Consensus 64 p~d~~~i~~Adliv~~G~~~E-~---~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~ 139 (294) +.....+.+||+|+..|.+.- . .+..+.+...++.++|.+.-.-.... ...|-|+=.-|-.-...+.. T Consensus 7 ~~~~~Di~nad~IL~~G~N~~~s~p~~~~~l~~ar~~GakvVvIdPr~t~ta--------~~AD~~l~vrPGtD~al~~a 78 (218) T 2iv2_X 7 SNAINEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETA--------RIADMHIALKNGSNIALLNA 78 (218) T ss_dssp SSCGGGGGGCSEEEEESCCHHHHCHHHHHHHHHHHHTTCEEEEECSSCCHHH--------HTCSEEECCCTTCHHHHHHH T ss_pred CCCCCCCCCCCEEEECCCCCHHHCCHHHHHHHHHHHCCCEEEEECCCCCHHH--------HHHHHHCCCCCCCHHHHHHH T ss_conf 8863211024246867818044111266777899867998999576420578--------88655135566868999976 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCH Q ss_conf 99998643188899999989986301455337899886307844736998266521457752972887226886400078 Q gi|254780537|r 140 IRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSP 219 (294) Q Consensus 140 I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~ 219 (294) |...+.+.+-.++++..+.. ..+++ ++..+... ...+.++. ...++ T Consensus 79 l~~~ii~~g~~d~~fv~~~t----~g~~~----~~~~~~~~------------t~~~~a~~--------------tGv~~ 124 (218) T 2iv2_X 79 MGHVIIEENLYDKAFVASRT----EGFEE----YRKIVEGY------------TPESVEDI--------------TGVSA 124 (218) T ss_dssp HHHHHHHTTCSCHHHHHHHE----ECHHH----HHHHHHTC------------CSGGGHHH--------------HCCCH T ss_pred HHHHHHHCCCCCHHHHHHCC----CCCCC----HHHHHHHC------------CHHHHHHH--------------CCCCH T ss_conf 56666766883644565324----67310----02444310------------02456765--------------28748 Q ss_pred HHHHHHHHHHCCCCCEEEEEECCC----CH----HHHHHHHHHHC---CCEEEEEECCC Q ss_conf 999999976201697189982789----97----99999999829---93444320123 Q gi|254780537|r 220 SMMRHAINQMRSHKIKFIFSESTN----SD----QPAKQVAYETN---ASYGGVLYVDS 267 (294) Q Consensus 220 ~~l~~~~~~ik~~~v~~if~e~~~----~~----~~~~~ia~e~~---~~~~~~~~~d~ 267 (294) .+|.++.+.+.+.+-.+++..... +. +.+..|+--+| .+-.++.++.. T Consensus 125 ~~i~~lA~~~a~a~~~~i~~g~g~~~~~~G~~~~rai~~L~~l~G~igk~GgG~~~~~G 183 (218) T 2iv2_X 125 SEIRQAARMYAQAKSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPHAGVNPVRG 183 (218) T ss_dssp HHHHHHHHHHHHSSSEEEEEETTGGGSSSHHHHHHHHHHHHHHTTCSSSTTCSEEEECS T ss_pred HHHHHHHHHHHCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC T ss_conf 88888899874035424633641122554208899999999984778987766664445 No 73 >>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A* (A:117-211) Probab=37.54 E-value=26 Score=15.23 Aligned_cols=64 Identities=3% Similarity=-0.105 Sum_probs=44.2 Q ss_pred HHHHCCCEEEEECCCC--CCC---CCCHHHHHHHHHHHC--CCCCEEEEEE--CCCCHHHHHHHHHHHCCCEE Q ss_conf 5775297288722688--640---007899999997620--1697189982--78997999999998299344 Q gi|254780537|r 197 LAEDFGFKSLYLWPIN--SDS---ERSPSMMRHAINQMR--SHKIKFIFSE--STNSDQPAKQVAYETNASYG 260 (294) Q Consensus 197 ~~~~yGl~~~~~~~~~--~~~---eps~~~l~~~~~~ik--~~~v~~if~e--~~~~~~~~~~ia~e~~~~~~ 260 (294) |.++.|+++....++. ... ..++.++.+....+- ..++..||.. ....-..++.+.+++|.|++ T Consensus 21 ~~~~~G~eV~~~~~l~~~~~~~ia~i~~~~i~~~~~~~~~d~p~adai~isCTnlrt~~~i~~lE~~lG~PVi 93 (95) T 3ixl_A 21 FLAEESLVPTGXRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSSGGLLTLDAIPEVERRLGVPVV 93 (95) T ss_dssp HHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEECTTSCCTTHHHHHHHHHSSCEE T ss_pred HHHHCCCEECCEEECCCCCCHHHCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCCCEE T ss_conf 9998797330311027885265403799999999999974189987899847885378899999999898898 No 74 >>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} (A:181-349) Probab=36.00 E-value=28 Score=15.07 Aligned_cols=81 Identities=22% Similarity=0.329 Sum_probs=42.5 Q ss_pred CCCCCEEEEECH--------HHHHHHHHHCCCEEEEEE-EECC----CCCCCCCC------CCHHHHHHHCCCCEEEEEC Q ss_conf 358828999752--------899999985189148999-6268----89801202------2712457760378999988 Q gi|254780537|r 20 TTQKKVVLSSFS--------IIGDITQNIAKDLVTVTT-LVEA----GNDSHSYQ------VTSADAIKIQNADLILCNG 80 (294) Q Consensus 20 ~~~~~~Vv~s~~--------pl~~iv~~I~gd~v~V~~-li~~----g~dpH~ye------~tp~d~~~i~~Adliv~~G 80 (294) .+++|.|++--. .+..+++..+-. |.. .... ..+|+..- -++...+.+.+||+++..| T Consensus 28 ~AkrPvii~G~~~~~~~~~~~l~~lae~~g~p---v~~t~~~kg~~~~~~p~~~G~~~~~~~~~~~~~~l~~aDlvl~~G 104 (169) T 1ovm_A 28 MSKRTALLADFLVLRHGLKHALQKWVKEVPMA---HATMLMGKGIFDERQAGFYGTYSGSASTGAVKEAIEGADTVLCVG 104 (169) T ss_dssp TCSCEEEEECHHHHHTTCHHHHHHHHHHSCCE---EEECGGGTTSSCTTSTTCCCCCCGGGSCHHHHHHHHTSSEEEEES T ss_pred HCCCCEEEECCCCCCCCCHHHHHHHHHHCCCC---EEECCCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECC T ss_conf 55886899576212353369999999866996---122233314126666534676246556599999984144011104 Q ss_pred CCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 76106899999742355752111 Q gi|254780537|r 81 LHLEETYMKYFTNLKKGTKIITV 103 (294) Q Consensus 81 ~~~E~~~~~~~~~~~~~~~~i~~ 103 (294) ..+-.+.........+..++|.+ T Consensus 105 ~~~~~~~~~~~~~~~~~~~~I~i 127 (169) T 1ovm_A 105 TRFTDTLTAGFTHQLTPAQTIEV 127 (169) T ss_dssp CCCCTTTTTTTCCCCCTTTEEEE T ss_pred CCCCCCCCCCCCCCCCCCCEEEE T ss_conf 34564444565445787404674 No 75 >>1wo8_A Methylglyoxal synthase; structural genomics, riken structural genomics/proteomics initiative, RSGI, lyase; 1.70A {Thermus thermophilus HB8} (A:) Probab=35.96 E-value=28 Score=15.07 Aligned_cols=72 Identities=7% Similarity=-0.039 Sum_probs=50.9 Q ss_pred CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC--C---C---HHHHHHHHHHH Q ss_conf 73699826652145775297288722688640007899999997620169718998278--9---9---79999999982 Q gi|254780537|r 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSEST--N---S---DQPAKQVAYET 255 (294) Q Consensus 184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~--~---~---~~~~~~ia~e~ 255 (294) +-.++++.....||.+.+|++...+.....+.++ ++.+.|++++|..|+.=+. . . ...++..|-+. T Consensus 29 G~~i~aT~gTa~~L~~~~Gi~~~~v~k~~~~~~~------~i~~~i~~g~i~~VIn~~~~~~~~~~~~dg~~iRR~ai~~ 102 (126) T 1wo8_A 29 RYPLLATGTTGARIQEATGLAVERVLSGPLGGDL------QIGARVAEGKVLAVVFLQDPLTAKPHEPDVQALMRVCNVH 102 (126) T ss_dssp TSCEEECHHHHHHHHHHHCCCCEECCCTTTTHHH------HHHHHHHTTCEEEEEEECCTTSCCTTHHHHHHHHHHHHHT T ss_pred CEEEEECHHHHHHHHHHCCCEEEEEECCCCCCCC------CHHHHHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHC T ss_conf 7689953348999998359568999417889999------9899998498209998169998764521089999999971 Q ss_pred CCCEEE Q ss_conf 993444 Q gi|254780537|r 256 NASYGG 261 (294) Q Consensus 256 ~~~~~~ 261 (294) |++... T Consensus 103 ~Vpl~T 108 (126) T 1wo8_A 103 GVPLAT 108 (126) T ss_dssp TCCEEC T ss_pred CCCEEE T ss_conf 989894 No 76 >>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} (A:12-131) Probab=35.92 E-value=28 Score=15.06 Aligned_cols=71 Identities=8% Similarity=-0.014 Sum_probs=50.9 Q ss_pred CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC--C---C---HHHHHHHHHHH Q ss_conf 73699826652145775297288722688640007899999997620169718998278--9---9---79999999982 Q gi|254780537|r 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSEST--N---S---DQPAKQVAYET 255 (294) Q Consensus 184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~--~---~---~~~~~~ia~e~ 255 (294) +-.++++-....||.+..|+.+..+.....+.+| ++.+.|+++++..|+.=+. . . ...++..|-+. T Consensus 28 Gf~l~AT~gTa~~L~e~~gi~~~~v~~~~~~g~~------~i~~~i~~g~i~~VIn~~~~~~~~~~~~d~~~iRR~Av~~ 101 (120) T 1b93_A 28 QHVLYATGTTGNLISRATGMNVNAMLSGPMGGDQ------QVGALISEGKIDVLIFFWDPLNAVPHDPDVKALLRLATVW 101 (120) T ss_dssp TSEEEEETTHHHHHHHHHCCCCEEECCGGGTHHH------HHHHHHHTTCCCEEEEECCTTSCCTTHHHHHHHHHHHHHT T ss_pred CCEEEECCCHHHHHHHHCCCCEEEEECCCCCCCC------CHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHC T ss_conf 9859977429999997259716876305666676------5999997698338997577767876523299999999971 Q ss_pred CCCEE Q ss_conf 99344 Q gi|254780537|r 256 NASYG 260 (294) Q Consensus 256 ~~~~~ 260 (294) +++.. T Consensus 102 ~Vpl~ 106 (120) T 1b93_A 102 NIPVA 106 (120) T ss_dssp TCCEE T ss_pred CCCEE T ss_conf 99556 No 77 >>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiamine diphosphate; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* (A:192-368) Probab=35.73 E-value=28 Score=15.04 Aligned_cols=82 Identities=13% Similarity=0.242 Sum_probs=46.2 Q ss_pred CCCCCEEEEEC--------HHHHHHHHHHCCCEEEEEEEECCCC--CCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHH Q ss_conf 35882899975--------2899999985189148999626889--8012022712457760378999988761068999 Q gi|254780537|r 20 TTQKKVVLSSF--------SIIGDITQNIAKDLVTVTTLVEAGN--DSHSYQVTSADAIKIQNADLILCNGLHLEETYMK 89 (294) Q Consensus 20 ~~~~~~Vv~s~--------~pl~~iv~~I~gd~v~V~~li~~g~--dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~ 89 (294) .+++|.|++-- ..+..+++..+-.. +++....|. +-|-+...+.--..+++||+++..|..+-.+... T Consensus 19 ~A~rPvii~G~~~~~~~a~~~l~~lae~~g~Pv--~~~~~~k~~~~~~~p~~~g~~~~~~l~~aDlii~iG~~~~~~~~~ 96 (177) T 2q28_A 19 KAERPLIILGKGAAYSQADEQLREFIESAQIPF--LPMSMAKGILEDTHPLSAAAARSFALANADVVMLVGARLNWLLAH 96 (177) T ss_dssp HCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE--EECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGGGGG T ss_pred CCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCC T ss_conf 336987999535333257999999975325875--221111345666686433544021203200022223432222343 Q ss_pred HHHHCCCCCCCCCC Q ss_conf 99742355752111 Q gi|254780537|r 90 YFTNLKKGTKIITV 103 (294) Q Consensus 90 ~~~~~~~~~~~i~~ 103 (294) ......+..++|.+ T Consensus 97 ~~~~~~~~~~vi~i 110 (177) T 2q28_A 97 GKKGWAADTQFIQL 110 (177) T ss_dssp GTTTSCTTCEEEEE T ss_pred CCCCCCCCCCCCCC T ss_conf 21236865443345 No 78 >>1o4v_A Phosphoribosylaminoimidazole mutase PURE; TM0446, structural genomics, JCSG, PSI, protein structure initiative; 1.77A {Thermotoga maritima} (A:) Probab=35.31 E-value=28 Score=15.00 Aligned_cols=101 Identities=12% Similarity=0.046 Sum_probs=49.9 Q ss_pred CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCC------CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 037899998876106899999742355752111237------42022210012334630111221356789999999998 Q gi|254780537|r 71 QNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDG------INPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKAL 144 (294) Q Consensus 71 ~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~------i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L 144 (294) .++++||.. .|++.-+.-++... -..++|.+.-. ++.+...-..- .+ =|=.=...+|..-.+.....-| T Consensus 67 ~~~~viIa~-AG~~a~Lpgvva~~-t~~PVIgvP~~~~~~~G~d~llS~v~Mp--~g-~pvatV~Id~~~nAA~~A~~Il 141 (183) T 1o4v_A 67 RGIEVIIAG-AGGAAHLPGMVASI-THLPVIGVPVKTSTLNGLDSLFSIVQMP--GG-VPVATVAINNAKNAGILAASIL 141 (183) T ss_dssp TTCCEEEEE-EESSCCHHHHHHHH-CSSCEEEEEECCTTTTTHHHHHHHHTCC--TT-CCCEECCTTCHHHHHHHHHHHH T ss_pred CCCEEEEEE-CCCCCCCCCEEEEE-CCEEEEECCCCCCCCCCHHHHHHHCCCC--CC-CCEEEEECCCHHHHHHHHHHHH T ss_conf 699599997-15766787548884-1502685146666677576788742488--88-8767775376589999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH Q ss_conf 64318889999998998630145533789988 Q gi|254780537|r 145 TALDPSNAKKYELNAREYSEKIRNSILPLKTR 176 (294) Q Consensus 145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~ 176 (294) .-.||+-++..+........++..-++++++. T Consensus 142 ~~~d~~l~~kl~~~r~~~~~~v~~~d~~l~~~ 173 (183) T 1o4v_A 142 GIKYPEIARKVKEYKERMKREVLEKAQRLEQI 173 (183) T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 56899999999999999999999899999998 No 79 >>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3d7k_A* (A:182-367) Probab=35.10 E-value=28 Score=14.98 Aligned_cols=135 Identities=9% Similarity=0.012 Sum_probs=61.5 Q ss_pred CCCCCEEEEEC--------HHHHHHHHHHCCCEEEEEEEECC----CCCCCCCC----CCHHHHHHHCCCCEEEEECCCC Q ss_conf 35882899975--------28999999851891489996268----89801202----2712457760378999988761 Q gi|254780537|r 20 TTQKKVVLSSF--------SIIGDITQNIAKDLVTVTTLVEA----GNDSHSYQ----VTSADAIKIQNADLILCNGLHL 83 (294) Q Consensus 20 ~~~~~~Vv~s~--------~pl~~iv~~I~gd~v~V~~li~~----g~dpH~ye----~tp~d~~~i~~Adliv~~G~~~ 83 (294) .+++|.|++-- ..+..+++.++-..+. +.... ..+|+..- -++.-...+.+||+++..|..+ T Consensus 22 ~A~rP~ii~G~~~~~~~a~~~l~~lae~lg~Pv~~--t~~~~g~~~~~~p~~~G~~~~~~~~~~~~~~~aDlil~iG~~~ 99 (186) T 2uz1_A 22 KAERPVIVLGSEASRTARKTALSAFVAATGVPVFA--DYEGLSMLSGLPDAMRGGLVQNLYSFAKADAAPDLVLMLGARF 99 (186) T ss_dssp HCSSEEEEECHHHHHHTCHHHHHHHHHHHCCCEEE--CGGGGGGGTTSCGGGEEEEGGGGGGTTTTTCCCSEEEEESCCS T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCC T ss_conf 28898799832422102689999999971974222--2000122356753002233101466665412542103321011 Q ss_pred CHHHHHHH-HHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH Q ss_conf 06899999-7423557521112374202221001233463011122135678999999999864-318889999998998 Q gi|254780537|r 84 EETYMKYF-TNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTA-LDPSNAKKYELNARE 161 (294) Q Consensus 84 E~~~~~~~-~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~-~dP~~~~~y~~N~~~ 161 (294) -.+..... .....+.++|.+.. +.... ..+...+-++.-|+ ...+..+...|.. .+|.......+.... T Consensus 100 ~~~~~~~~~~~~~~~~~iI~id~--d~~~~----~~~~~~~~~i~~d~---~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 170 (186) T 2uz1_A 100 GLNTGHGSGQLIPHSAQVIQVDP--DACEL----GRLQGIALGIVADV---GGTIEALAQATAQDAAWPDRGDWCAKVTD 170 (186) T ss_dssp SGGGTTTSCSSSCTTSEEEEECS--CGGGT----TSSSCCSEEECSCH---HHHHHHHHHHHTTSCCCCCCHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCCCCCC--HHHHH----HCCCCHHEECCCCH---HHHHHHHHHHHHCCCHHCCCCCCCHHHHH T ss_conf 11212465556774323333562--13332----10211000000011---15667678875112100012322001210 Q ss_pred HHCC Q ss_conf 6301 Q gi|254780537|r 162 YSEK 165 (294) Q Consensus 162 ~~~~ 165 (294) ..++ T Consensus 171 ~~~~ 174 (186) T 2uz1_A 171 LAQE 174 (186) T ss_dssp HHHH T ss_pred CCCC T ss_conf 0111 No 80 >>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A* (A:1-93,A:210-255) Probab=34.73 E-value=29 Score=14.94 Aligned_cols=68 Identities=10% Similarity=0.221 Sum_probs=42.8 Q ss_pred HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHHHCCCEEEEEECCCC Q ss_conf 4577529728872268864000789999999762016971899827899-799999999829934443201237 Q gi|254780537|r 196 YLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNS-DQPAKQVAYETNASYGGVLYVDSL 268 (294) Q Consensus 196 Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~-~~~~~~ia~e~~~~~~~~~~~d~l 268 (294) |+++.-++. .|..+..+. -+...++.+.+.+.+++.|+.--+.. ....+.+.+...++++++...|.+ T Consensus 30 Y~aD~a~~P----YG~Ks~eeI-~~~~~~iv~~L~~~~vk~IVIACNTASa~aL~~LR~~~~iPVIGvI~~~~~ 98 (139) T 2jfz_A 30 YYGDSARVP----YGTKDPTTI-KQFGLEALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVGVISGDAI 98 (139) T ss_dssp EEECTTTCC----CTTSCHHHH-HHHHHHHHHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEECSSHHHHH T ss_pred EEECCCCCC----CCCCCHHHH-HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHCCCEEEEECCHHHHH T ss_conf 995378899----899999999-999999999876336567887054687742688864486179966408999 No 81 >>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, infectious diseases, isomerase; 2.35A {Vibrio cholerae} (A:197-381) Probab=34.46 E-value=15 Score=16.87 Aligned_cols=36 Identities=17% Similarity=0.146 Sum_probs=22.0 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 11221356789999999998643188899999989986 Q gi|254780537|r 125 HAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREY 162 (294) Q Consensus 125 H~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~ 162 (294) -.|+.+.+...+++.|...+ .||+....+.+|+++| T Consensus 150 ~g~~~~~d~~~l~~~i~~ll--~d~~~~~~~~~~ar~y 185 (185) T 3dzc_A 150 TVKLVGTNQQQICDALSLLL--TDPQAYQAMSQAHNPY 185 (185) T ss_dssp SEEECTTCHHHHHHHHHHHH--HCHHHHHHHHTSCCTT T ss_pred EEEECCCCHHHHHHHHHHHH--CCHHHHHHHCCCCCCC T ss_conf 16987899999999999997--1978776404478989 No 82 >>1m1n_B Nitrogenase molybdenum-iron protein beta chain; atomic resolution, FEMO cofactor, nitrogen fixation, central nitrogen ligand; HET: HCA CLF CFN; 1.16A {Azotobacter vinelandii} (B:33-63,B:339-522) Probab=33.30 E-value=30 Score=14.79 Aligned_cols=105 Identities=13% Similarity=0.081 Sum_probs=56.0 Q ss_pred HHHHHHHHCCCCCCCEEEEECCC----CHHHHHHCCCEEEEECCCCCCCC--------------------CCHHHHHHHH Q ss_conf 78998863078447369982665----21457752972887226886400--------------------0789999999 Q gi|254780537|r 171 LPLKTRIEKVDPEKRWFVTSEGC----LVYLAEDFGFKSLYLWPINSDSE--------------------RSPSMMRHAI 226 (294) Q Consensus 171 ~~~~~~~~~~p~~~~~~v~~H~a----f~Y~~~~yGl~~~~~~~~~~~~e--------------------ps~~~l~~~~ 226 (294) ..++..+. ++|.+|..-+. +.-|.++.|++++.+.......+ .-..+..++. T Consensus 48 ~~~~~~l~----GKrv~I~gd~~~~~~la~fL~ElGm~vv~~~~~~~~~~~~e~~~~~l~~~~~~~~~~v~~~~d~~e~~ 123 (215) T 1m1n_B 48 TDSHTWLH----GKRFALWGDPDFVMGLVKFLLELGCEPVHILCHNGNKRWKKAVDAILAASPYGKNATVYIGKDLWHLR 123 (215) T ss_dssp HHHHHHHT----TCEEEEECCHHHHHHHHHHHHHTTCEEEEEEETTCCHHHHHHHHHHHHTSGGGTTCEEEESCCHHHHH T ss_pred HHHHHHHC----CCEEEEECCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCCCEEEECCCHHHHH T ss_conf 99999747----98799988828999999999986997349994589978999999998525568787799689999999 Q ss_pred HHHCCCCCEEEEEECCCCHHH----HHHHHHHHCCCEEEE--EECCCCCCCCCCCCCHHHH Q ss_conf 762016971899827899799----999999829934443--2012378777886899999 Q gi|254780537|r 227 NQMRSHKIKFIFSESTNSDQP----AKQVAYETNASYGGV--LYVDSLSKPDGPAPTYLDL 281 (294) Q Consensus 227 ~~ik~~~v~~if~e~~~~~~~----~~~ia~e~~~~~~~~--~~~d~l~~~~~~~~~Y~~~ 281 (294) +.|++.+...+|..+ ..+. .+.+++..|++.... ...|-++....+--+|-+. T Consensus 124 ~~i~~~~pDLiig~s--~ek~~a~~~r~~a~~lgiPli~~g~P~~d~~~~~~~p~~GY~Ga 182 (215) T 1m1n_B 124 SLVFTDKPDFMIGNS--YGKFIQRDTLHKGKEFEVPLIRIGFPIFDRHHLHRSTTLGYEGA 182 (215) T ss_dssp HHHHHSCCSEEEECT--THHHHHHHHHHHCGGGCCCEEECSSCCCSSSSGGGCCCSHHHHH T ss_pred HHHHHCCCCEEEECC--CCHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCHHHHH T ss_conf 998627999999788--53001123456787649987982177478645777765238789 No 83 >>3lmz_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} (A:) Probab=33.00 E-value=31 Score=14.75 Aligned_cols=53 Identities=4% Similarity=-0.107 Sum_probs=25.0 Q ss_pred CCCEEEEECHH-----HHH---HHHHHCCCEEEEEEEECCCCCCCCCCCCHHHH----HHHCCCCEEEEEC Q ss_conf 88289997528-----999---99985189148999626889801202271245----7760378999988 Q gi|254780537|r 22 QKKVVLSSFSI-----IGD---ITQNIAKDLVTVTTLVEAGNDSHSYQVTSADA----IKIQNADLILCNG 80 (294) Q Consensus 22 ~~~~Vv~s~~p-----l~~---iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~----~~i~~Adliv~~G 80 (294) .+.++..++.. +.+ .+++.|-+.+++ .+.. +....++.++ +.+.+..+-+... T Consensus 16 ~~mkig~~~~~~~~~~l~~~l~~~~~~G~~~iel---~~~~---~~~~~~~~~~~~~~~~~~~~gl~~~~~ 80 (257) T 3lmz_A 16 NPFHLGXAGYTFVNFDLDTTLKTLERLDIHYLCI---KDFH---LPLNSTDEQIRAFHDKCAAHKVTGYAV 80 (257) T ss_dssp CSSEEEECGGGGTTSCHHHHHHHHHHTTCCEEEE---CTTT---SCTTCCHHHHHHHHHHHHHTTCEEEEE T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHCCCCEEEE---CCCC---CCCCCCHHHHHHHHHHHHHCCCEEEEC T ss_conf 9867999712268999999999999869998996---3677---787899999999999998619889981 No 84 >>2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide formyl transferase; purine ribonucleotide biosynthesis, PURT; HET: ADP; 1.70A {Pyrococcus horikoshii OT3} PDB: 2czg_A* (A:1-108) Probab=31.55 E-value=32 Score=14.60 Aligned_cols=77 Identities=10% Similarity=0.025 Sum_probs=47.4 Q ss_pred CCCCCEEEEECCCC----HHHHHHCCCEEEEECCCCCCC----------CCCHHHHHHHHHHHCCCCCEEEEEECC-CCH Q ss_conf 84473699826652----145775297288722688640----------007899999997620169718998278-997 Q gi|254780537|r 181 DPEKRWFVTSEGCL----VYLAEDFGFKSLYLWPINSDS----------ERSPSMMRHAINQMRSHKIKFIFSEST-NSD 245 (294) Q Consensus 181 p~~~~~~v~~H~af----~Y~~~~yGl~~~~~~~~~~~~----------eps~~~l~~~~~~ik~~~v~~if~e~~-~~~ 245 (294) |..++.+|..-.-. ..-+++.|++++.+-. +++. ..+..+...+.+++++.++.+|.+|.. .+- T Consensus 17 ~~~~kilIlG~Gqla~~l~~aa~~lG~~~~~~d~-~~~~pa~~~ad~~~~~~~~D~~~i~~~a~~~~~D~I~~e~e~i~~ 95 (108) T 2dwc_A 17 DSAQKILLLGSGELGKEIAIEAQRLGVEVVAVDR-YANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEIEAINL 95 (108) T ss_dssp TTCCEEEEESCSHHHHHHHHHHHHTTCEEEEEES-STTCHHHHHSSEEEESCTTCHHHHHHHHHHHCCSEEEECSSCSCH T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC-CCCCCHHHHCCEEEECCCCCHHHHHHHHHHCCCCEEEECCCCCCH T ss_conf 9988999999789999999999987998999979-898857774565897899999999999987399999968887578 Q ss_pred HHHHHHHHHHCCCE Q ss_conf 99999999829934 Q gi|254780537|r 246 QPAKQVAYETNASY 259 (294) Q Consensus 246 ~~~~~ia~e~~~~~ 259 (294) ..++.+ ++.|+++ T Consensus 96 ~~~~~~-e~~Gi~v 108 (108) T 2dwc_A 96 DALFEF-EKDGYFV 108 (108) T ss_dssp HHHHHH-HHTTCCB T ss_pred HHHHHH-HHHCCCC T ss_conf 999999-8616624 No 85 >>3kuu_A Phosphoribosylaminoimidazole carboxylase catalytic subunit PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structural genomics; 1.41A {Yersinia pestis} PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A* (A:) Probab=31.18 E-value=33 Score=14.56 Aligned_cols=39 Identities=8% Similarity=0.036 Sum_probs=20.8 Q ss_pred CHHHHHHH------CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 71245776------037899998876106899999742355752111 Q gi|254780537|r 63 TSADAIKI------QNADLILCNGLHLEETYMKYFTNLKKGTKIITV 103 (294) Q Consensus 63 tp~d~~~i------~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~ 103 (294) +|..+.++ .+.++||.. .|++..+.-.+.... ..++|.+ T Consensus 52 ~p~~l~~~~~~~~~~~~~viIa~-AG~aa~Lpgvva~~t-~~PVIgv 96 (174) T 3kuu_A 52 TPDRLFSFAEQAEANGLHVIIAG-NGGAAHLPGXLAAKT-LVPVLGV 96 (174) T ss_dssp CHHHHHHHHHHTTTTTCSEEEEE-EESSCCHHHHHHHTC-SSCEEEE T ss_pred CHHHHHHHHHHHHHCCCEEEEEE-CCCCCCCCHHHHHHC-CCCCCCC T ss_conf 81788888999986498399981-477544501677735-6762123 No 86 >>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondrial; NAD dependent deacetylase, sirtuin, substrate peptide complex, hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A (A:1-40,A:108-133,A:189-264) Probab=31.15 E-value=33 Score=14.55 Aligned_cols=74 Identities=18% Similarity=0.246 Sum_probs=45.4 Q ss_pred HHHHHHHHHHC-CCEEEEEEEECCCCCC-CCC-----------------------CCCHHHHHHHCCCCEEEEECCCCCH Q ss_conf 28999999851-8914899962688980-120-----------------------2271245776037899998876106 Q gi|254780537|r 31 SIIGDITQNIA-KDLVTVTTLVEAGNDS-HSY-----------------------QVTSADAIKIQNADLILCNGLHLEE 85 (294) Q Consensus 31 ~pl~~iv~~I~-gd~v~V~~li~~g~dp-H~y-----------------------e~tp~d~~~i~~Adliv~~G~~~E~ 85 (294) .-+.++++-|- |..-++..|+..|.+. .-. .-.......+.+||+++..|-.+.- T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~gag~s~~~gi~~c~g~lrp~iv~F~E~~~~~~~~~~~~a~~~~~~aDLlIViGTSL~V 88 (142) T 3glr_A 9 LSLQDVAELIRARACQRVVVMVGAGISTPSGILLRLYTQNIDGLERVSGIPASKLVEALLHVVDFPMADLLLILGTSLEV 88 (142) T ss_dssp CCHHHHHHHHHTTSCCCEEEEECGGGTGGGTCEEEEEECCCSCHHHHTTCCGGGEEETGGHHHHHHHCSEEEEESCCCCE T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCHHHHHCCCCEEEECCCCCHHHHCCCCCCCCEEEHHHHHHHHCCCEEEEECCCCEE T ss_conf 49999999998579996999938711120288746985355116866599953231449999999659999998987857 Q ss_pred H-HHHHHHHCCCCCCCCCCC Q ss_conf 8-999997423557521112 Q gi|254780537|r 86 T-YMKYFTNLKKGTKIITVT 104 (294) Q Consensus 86 ~-~~~~~~~~~~~~~~i~~~ 104 (294) + ...+......+.+++.+. T Consensus 89 ~P~a~Lv~~a~~~~p~vlIN 108 (142) T 3glr_A 89 EPFASLTEAVRSSVPRLLIN 108 (142) T ss_dssp ETTGGGGGSSCTTSCEEEEE T ss_pred CCHHHHHHHHHCCCCEEEEE T ss_conf 58868999998799899990 No 87 >>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cancer cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} (A:54-132) Probab=30.85 E-value=33 Score=14.52 Aligned_cols=56 Identities=14% Similarity=0.289 Sum_probs=36.1 Q ss_pred CCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHHHHHHC Q ss_conf 52145775297288722688640007899999997620169718998278997--99999999829 Q gi|254780537|r 193 CLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSD--QPAKQVAYETN 256 (294) Q Consensus 193 af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~--~~~~~ia~e~~ 256 (294) ++.|+++.+|++..-+.. +. .++ .-++.++..+.++++++..... +.++.++++.+ T Consensus 15 a~A~~a~~~g~~~~iv~p---~~-~~~----~k~~~~~~~Ga~Vi~~~~~~~~~~~~a~~~a~~~g 72 (79) T 2rkb_A 15 AAAYAARKLGIPATIVLP---ES-TSL----QVVQRLQGEGAEVQLTGKVWDEANLRAQELAKRDG 72 (79) T ss_dssp HHHHHHHHHTCCEEEEEC---TT-CCH----HHHHHHHHTTCEEEECCSSHHHHHHHHHHHHHSTT T ss_pred HHHHHHHCCCCCEEECCC---CC-CHH----HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCC T ss_conf 988745214643043155---21-022----67776520486422357531101599999987539 No 88 >>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein structure initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} (A:) Probab=30.41 E-value=34 Score=14.47 Aligned_cols=18 Identities=11% Similarity=0.196 Sum_probs=8.1 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 221356789999999998 Q gi|254780537|r 127 WMSLTNAMIYIENIRKAL 144 (294) Q Consensus 127 Wldp~~~~~~a~~I~~~L 144 (294) |+.|.+...++++|...+ T Consensus 143 ~~~~~~~~~l~~~i~~~~ 160 (177) T 2f9f_A 143 YLVNADVNEIIDAXKKVS 160 (177) T ss_dssp EEECSCHHHHHHHHHHHH T ss_pred EECCCCHHHHHHHHHHHH T ss_conf 981889999999999998 No 89 >>2e7z_A Acetylene hydratase AHY; tungstoprotein, DMSO reductase family, iron-sulfur-cluster, lyase; HET: MGD; 1.26A {Pelobacter acetylenicus} (A:46-136,A:384-458) Probab=30.39 E-value=34 Score=14.47 Aligned_cols=54 Identities=15% Similarity=0.110 Sum_probs=41.4 Q ss_pred ECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC Q ss_conf 266521457752972887226886400078999999976201697189982789 Q gi|254780537|r 190 SEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN 243 (294) Q Consensus 190 ~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~ 243 (294) .+..+..|++.+|-.........+.....+..+.+.+...+..+|+.+|.-... T Consensus 70 ~~~~~~~~~~~~G~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~l~~~~~N 123 (166) T 2e7z_A 70 EYGTLRRFMNLLGSPNWTSAMYMGAFMANPTALFTAMATEKPYPVKAFFALASN 123 (166) T ss_dssp CTTHHHHHHHHHTCCCEECGGGSSCSCCCHHHHHHHHHHCCSSCCCEEEEESCC T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCC T ss_conf 999999999970999767863066433463167777650377752899993786 No 90 >>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* (A:29-134) Probab=29.66 E-value=28 Score=14.97 Aligned_cols=81 Identities=11% Similarity=0.054 Sum_probs=43.4 Q ss_pred HHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEEC--CCCCCCCCCHHHHHHHHHHHCCCCCEEEE Q ss_conf 8630145533789988630784473699826652145775297288722--68864000789999999762016971899 Q gi|254780537|r 161 EYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLW--PINSDSERSPSMMRHAINQMRSHKIKFIF 238 (294) Q Consensus 161 ~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~--~~~~~~eps~~~l~~~~~~ik~~~v~~if 238 (294) ++.++...+-..+++... ...+.+..+-.++...|+.-.+|.-..+.. .+++ .-++.++ ...++..+.++|| T Consensus 3 el~~~~~~~A~~L~~~~~-~~~gd~V~i~~~n~~~~~~~~la~~~~G~v~vpl~~--~~~~~~l---~~~l~~s~~~~ii 76 (106) T 3e7w_A 3 ELWEQSDRAAAAIQKRIS-GEKKSPILVYGHMEPHMIVSFLGSVKAGHPYIPVDL--SIPSERI---AKIIESSGAELLI 76 (106) T ss_dssp HHHHHHHHHHHHHTTTSC-SSSCCCEEEEESSCHHHHHHHHHHHHHTCCEEEEET--TSCHHHH---HHHHHHHTCCEEE T ss_pred HHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCHHHHHHHHHHHHHCCEEEEECC--CCCHHHH---HHHHHHCCCCEEE T ss_conf 999999999999998469-999999999858999999999999985969997288--8999999---9999856998999 Q ss_pred EECCCCHHH Q ss_conf 827899799 Q gi|254780537|r 239 SESTNSDQP 247 (294) Q Consensus 239 ~e~~~~~~~ 247 (294) ++...-++. T Consensus 77 ~~~~~~~~~ 85 (106) T 3e7w_A 77 HAAGLSIDA 85 (106) T ss_dssp ESSSCCTTC T ss_pred EECCCCCCC T ss_conf 851332210 No 91 >>1wpb_A Hypothetical protein YFBU; structural genomics, MCSG, NCS, regulatory protein, protein structure initiative, PSI; 2.00A {Escherichia coli} (A:1-60) Probab=29.60 E-value=35 Score=14.38 Aligned_cols=30 Identities=33% Similarity=0.582 Sum_probs=21.1 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC Q ss_conf 9999999998643188899999989986301 Q gi|254780537|r 135 IYIENIRKALTALDPSNAKKYELNAREYSEK 165 (294) Q Consensus 135 ~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~ 165 (294) .+..+=..-++.+||+|++.|+ ++++..++ T Consensus 17 LILsNQY~lM~~LdP~Na~kY~-RlqtIver 46 (60) T 1wpb_A 17 LILSNQYKMMTMLDPANAERYR-RLQTIIER 46 (60) T ss_dssp HHHHHHHHHHHHHCGGGHHHHH-HHHHHHHH T ss_pred HHHHHHHHHHHHHCCCCHHHHH-HHHHHHHC T ss_conf 9999899999861920002299-99999976 No 92 >>2d59_A Hypothetical protein PH1109; COA binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.65A {Pyrococcus horikoshii OT3} (A:) Probab=29.30 E-value=35 Score=14.35 Aligned_cols=70 Identities=13% Similarity=0.095 Sum_probs=48.5 Q ss_pred CCCHH----HHHHCCCEEEEECCCCC----------------CCC-----CCHHHHHHHHHHHCCCCCEEEEEECCCCHH Q ss_conf 65214----57752972887226886----------------400-----078999999976201697189982789979 Q gi|254780537|r 192 GCLVY----LAEDFGFKSLYLWPINS----------------DSE-----RSPSMMRHAINQMRSHKIKFIFSESTNSDQ 246 (294) Q Consensus 192 ~af~Y----~~~~yGl~~~~~~~~~~----------------~~e-----ps~~~l~~~~~~ik~~~v~~if~e~~~~~~ 246 (294) ..++| ...++|+++.++..... ..+ ..|+...++.+.+.+.+++.++..+.--+. T Consensus 35 ~~~g~~v~~~l~~~G~~V~~V~p~~~~i~g~~~~~sl~elp~~~Dlv~i~~p~~~~~~i~~e~~~~g~k~v~~~~~g~~e 114 (144) T 2d59_A 35 ERDANIVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKKGAKVVWFQYNTYNR 114 (144) T ss_dssp TSHHHHHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCHHHHHHHHHHHHHHTCSEEEECTTCCCH T ss_pred CCCHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCCH T ss_conf 98259999999978998999897333007974566420146765079998588999999999997299999994264499 Q ss_pred HHHHHHHHHCCCEEE Q ss_conf 999999982993444 Q gi|254780537|r 247 PAKQVAYETNASYGG 261 (294) Q Consensus 247 ~~~~ia~e~~~~~~~ 261 (294) .+..++++.|+++++ T Consensus 115 ~~~~~a~~~gi~vvg 129 (144) T 2d59_A 115 EASKKADEAGLIIVA 129 (144) T ss_dssp HHHHHHHHTTCEEEE T ss_pred HHHHHHHHCCCEEEC T ss_conf 999999996998895 No 93 >>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infectious disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} (A:1-111,A:300-332) Probab=29.03 E-value=36 Score=14.32 Aligned_cols=85 Identities=19% Similarity=0.139 Sum_probs=45.2 Q ss_pred CCCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHH-HHHCCCCEEEEECC-CCCHHHHHHHHHC Q ss_conf 643358828999752899999985189148999626889801202271245-77603789999887-6106899999742 Q gi|254780537|r 17 ASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADA-IKIQNADLILCNGL-HLEETYMKYFTNL 94 (294) Q Consensus 17 ~~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~-~~i~~Adliv~~G~-~~E~~~~~~~~~~ 94 (294) .+....+++|+.+-+......+.+-...-.+.... ....++.++ +.++++|.++..+. .+..-+ +... T Consensus 9 ~~~~~~k~~Vl~~~~~~~~~~~~L~~~~~~~~~~~-------~~~~~~eel~e~i~daD~Ii~~~~~~i~~e~---L~~~ 78 (144) T 3k5p_A 9 LSLSRDRINVLLLEGISQTAVEYFKSSGYTNVTHL-------PKALDKADLIKAISSAHIIGIRSRTQLTEEI---FAAA 78 (144) T ss_dssp ---CGGGSCEEECSCCCHHHHHHHHHTTCCCEEEC-------SSCCCHHHHHHHHTTCSEEEECSSCCBCHHH---HHHC T ss_pred CCCCCCCCEEEEECCCCHHHHHHHHHCCCEEEEEC-------CCCCCHHHHHHHHCCCCEEEECCCCCCCHHH---HHCC T ss_conf 54556787799928999999999997899899968-------9999999999984699399987899879999---9409 Q ss_pred CCCCCCC-CCCCCCCHHHH Q ss_conf 3557521-11237420222 Q gi|254780537|r 95 KKGTKII-TVTDGINPIGV 112 (294) Q Consensus 95 ~~~~~~i-~~~~~i~~~~~ 112 (294) ++.+.| ..+-|.+.++. T Consensus 79 -p~LK~I~~~gvG~D~IDl 96 (144) T 3k5p_A 79 -NRLIAVGCFSVGTNQVEL 96 (144) T ss_dssp -TTCCEEEECSSCCTTBCH T ss_pred -CCCEEEEECCCCCCCCCC T ss_conf -997199988854465461 No 94 >>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* (A:233-392) Probab=28.96 E-value=31 Score=14.68 Aligned_cols=71 Identities=8% Similarity=-0.060 Sum_probs=43.4 Q ss_pred HHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 45776037899998876106899999742355752111237420222100123346301112213567899999999986 Q gi|254780537|r 66 DAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALT 145 (294) Q Consensus 66 d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~ 145 (294) -..-+++||+++... ..|++-.++++....+..+|....+...... .....++.++.+...+++.|...+. T Consensus 76 ~~~~~~~~di~i~~~-~~e~~~~~~~Ea~a~G~pvi~~~~~~~~e~~--------~~~~~~~~~~~d~~~~~~~i~~l~~ 146 (160) T 2x0d_A 76 YADLLKRSSIGISLX-ISPHPSYPPLEXAHFGLRVITNKYENKDLSN--------WHSNIVSLEQLNPENIAETLVELCX 146 (160) T ss_dssp HHHHHHHCCEEECCC-SSSSCCSHHHHHHHTTCEEEEECBTTBCGGG--------TBTTEEEESSCSHHHHHHHHHHHHH T ss_pred HHHHHHHCCEEEECC-CCCCCCHHHHHHHHCCCCEEEECCCCCCEEE--------ECCCEEEECCCCHHHHHHHHHHHHH T ss_conf 999999649899832-5566766899999859939995799852578--------8897899889999999999999984 No 95 >>1x7f_A Outer surface protein; structural genomics, unknown function, protein structure initiative, MCSG, PSI; 2.30A {Bacillus cereus atcc 14579} (A:1-267) Probab=28.87 E-value=36 Score=14.30 Aligned_cols=69 Identities=9% Similarity=0.039 Sum_probs=39.8 Q ss_pred CEEEEECCCCH---------------HHHHHCCCEEEEECCC-C--------CCCCCCHH------HHHHHHHHHCCCCC Q ss_conf 36998266521---------------4577529728872268-8--------64000789------99999976201697 Q gi|254780537|r 185 RWFVTSEGCLV---------------YLAEDFGFKSLYLWPI-N--------SDSERSPS------MMRHAINQMRSHKI 234 (294) Q Consensus 185 ~~~v~~H~af~---------------Y~~~~yGl~~~~~~~~-~--------~~~eps~~------~l~~~~~~ik~~~v 234 (294) ..+.+.|+=|. -+.++||++..+...- . .++-||.. -..++........| T Consensus 165 ~~l~acHNFYPr~~TGLs~~~f~~~n~~~k~~gi~t~AFI~g~~~~rGPwpl~eGLPTLE~HR~~~~~~aa~~L~~~g~i 244 (267) T 1x7f_A 165 SALIGCHNFYPQKFTGLPYDYFIRCSERFKKHGIRSAAFITSHVANIGPWDINDGLCTLEEHRNLPIEVQAKHLWATGLI 244 (267) T ss_dssp GGEEEECCCBCSTTCSBCHHHHHHHHHHHHHTTCCCEEEECCSSCCBCSSSCCSCCBSBGGGTTSCHHHHHHHHHHTTSC T ss_pred HHEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHCCCC T ss_conf 54799866679987788999999999999976998799943787788985225898847776799999999999863898 Q ss_pred EEEE-EECCCCHHHHHHHHH Q ss_conf 1899-827899799999999 Q gi|254780537|r 235 KFIF-SESTNSDQPAKQVAY 253 (294) Q Consensus 235 ~~if-~e~~~~~~~~~~ia~ 253 (294) ..|+ .++..+.+..+.+++ T Consensus 245 D~V~IGD~~~s~~el~~l~~ 264 (267) T 1x7f_A 245 DDVIIGNAYASEEELEKLGN 264 (267) T ss_dssp CEEEECSBCCCHHHHHHHHH T ss_pred CEEEECCCCCCHHHHHHHHH T ss_conf 98997688589999999998 No 96 >>3cf4_G Acetyl-COA decarbonylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductase; 2.00A {Methanosarcina barkeri} (G:) Probab=28.86 E-value=36 Score=14.30 Aligned_cols=26 Identities=15% Similarity=-0.031 Sum_probs=18.2 Q ss_pred CHHHHHHHCCCCEEEEECCCCCHHHH Q ss_conf 71245776037899998876106899 Q gi|254780537|r 63 TSADAIKIQNADLILCNGLHLEETYM 88 (294) Q Consensus 63 tp~d~~~i~~Adliv~~G~~~E~~~~ 88 (294) ++.-...+++||+++..|..+..+.. T Consensus 98 ~~~~~~~~~~aDlii~iG~~~~~~~t 123 (170) T 3cf4_G 98 KWPGLDGNGNYDMIITIGFKKFYINQ 123 (170) T ss_dssp TCCCSSSSCCCSEEEEESCCHHHHHH T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCC T ss_conf 78888533467889995770042141 No 97 >>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* (A:73-154) Probab=28.72 E-value=36 Score=14.28 Aligned_cols=58 Identities=19% Similarity=0.273 Sum_probs=38.4 Q ss_pred CCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHHHHHHCCC Q ss_conf 52145775297288722688640007899999997620169718998278997--9999999982993 Q gi|254780537|r 193 CLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSD--QPAKQVAYETNAS 258 (294) Q Consensus 193 af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~--~~~~~ia~e~~~~ 258 (294) ++.|.++.+|++...+.. .. .++ .-++.++..+..+++++..... ..++.++++.+.- T Consensus 18 a~A~~a~~~G~~~~iv~p---~~-~~~----~k~~~l~~~GA~Vi~~~~~~~~~~~~a~~~a~~~~~~ 77 (82) T 3l6b_A 18 ALTYAAKLEGIPAYIVVP---QT-APD----CKKLAIQAYGASIVYCEPSDESRENVAKRVTEETEGI 77 (82) T ss_dssp HHHHHHHHTTCCEEEEEE---TT-SCH----HHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHTCE T ss_pred HHHHHHHHCCCCCCCCCC---HH-HHH----HHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCCCE T ss_conf 999999985998655686---05-678----9988875168743870550456666666667504853 No 98 >>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate binding, hydrolase; NMR {Escherichia coli K12} (A:) Probab=28.55 E-value=36 Score=14.26 Aligned_cols=66 Identities=17% Similarity=0.038 Sum_probs=37.4 Q ss_pred CEEEEECHH----HH-HHHHHHCCC-EEEEEEEEC-C---------------CCCCCCCCCCHHHHHHHCCCCEEEEECC Q ss_conf 289997528----99-999985189-148999626-8---------------8980120227124577603789999887 Q gi|254780537|r 24 KVVLSSFSI----IG-DITQNIAKD-LVTVTTLVE-A---------------GNDSHSYQVTSADAIKIQNADLILCNGL 81 (294) Q Consensus 24 ~~Vv~s~~p----l~-~iv~~I~gd-~v~V~~li~-~---------------g~dpH~ye~tp~d~~~i~~Adliv~~G~ 81 (294) ...|++-+. ++ -+.+..+++ .++.-.+.. + |.|+..+.+.+-+...+.++|+||..+. T Consensus 25 VLFVC~~N~~RS~mAEai~~~~~~~~~v~Sag~~~~~~~~~~p~a~~~l~~~gid~~~~~s~~l~~~~~~~~DlIitm~~ 104 (167) T 2fek_A 25 ILVVCVGNICRSPTAERLLQRYHPELKVESAGLGALVGKGADPTAISVAAEHQLSLEGHCARQISRRLCRNYDLILTMEK 104 (167) T ss_dssp EEEEESSSSSHHHHHHHHHHHHCTTCEEEEEETTCCTTCCCCHHHHHHHHHTTCCCTTCCCCBCCHHHHHHSSEEEESCH T ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHCCCCCEEEEEHH T ss_conf 89992894789999999999718988378253467789877857999999854564455322116876224678841059 Q ss_pred CCCHHHHH Q ss_conf 61068999 Q gi|254780537|r 82 HLEETYMK 89 (294) Q Consensus 82 ~~E~~~~~ 89 (294) +.-..+.. T Consensus 105 ~~~~~l~~ 112 (167) T 2fek_A 105 RHIERLCE 112 (167) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 89999999 No 99 >>1yz1_A Translationally controlled tumor protein; unknown function; 2.00A {Homo sapiens} (A:) Probab=28.52 E-value=36 Score=14.26 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=32.8 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH Q ss_conf 356789999999998643188899999989986301455 Q gi|254780537|r 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRN 168 (294) Q Consensus 130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~ 168 (294) -...+.+...|...|.+..|+.-+.|.+++..|.+++.. T Consensus 91 ~~yiK~YmK~i~~~L~e~~~e~v~~Fk~~a~~~vK~il~ 129 (174) T 1yz1_A 91 KKYIKDYMKSIKGKLEEQRPERVKPFMTGAAEQIKHILA 129 (174) T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH T ss_conf 999999999999986610988999999886999999873 No 100 >>2q7x_A UPF0052 protein SP_1565; NP_346012.1, uncharacterized protein SP_1565, structural genomics, joint center for structural genomics; HET: MLY MSE; 2.00A {Streptococcus pneumoniae TIGR4} (A:1-46,A:122-130,A:172-326) Probab=28.15 E-value=33 Score=14.52 Aligned_cols=26 Identities=15% Similarity=0.130 Sum_probs=20.0 Q ss_pred CCCCHHHHHHHCCCCEEEEE-CCCCCH Q ss_conf 02271245776037899998-876106 Q gi|254780537|r 60 YQVTSADAIKIQNADLILCN-GLHLEE 85 (294) Q Consensus 60 ye~tp~d~~~i~~Adliv~~-G~~~E~ 85 (294) =++.|.-+.+|++||+|++- |--|.+ T Consensus 56 ~~a~p~ai~AI~~ADlIvlgPGSlyTS 82 (210) T 2q7x_A 56 PLASRRVVQTILESDXIVLGPGSLFTS 82 (210) T ss_dssp CCBCSHHHHHHHHCSEEEECSSCCCCC T ss_pred CCCCHHHHHHHHHCCEEEECCCCCHHH T ss_conf 877999999996199899979960776 No 101 >>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* (A:202-364) Probab=27.70 E-value=38 Score=14.17 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=37.5 Q ss_pred CCCCCEEEEEC--------HHHHHHHHHHCCCEEEEEE-EECC----CCCCCCC-----CC-CHHHHHHHCCCCEEEEEC Q ss_conf 35882899975--------2899999985189148999-6268----8980120-----22-712457760378999988 Q gi|254780537|r 20 TTQKKVVLSSF--------SIIGDITQNIAKDLVTVTT-LVEA----GNDSHSY-----QV-TSADAIKIQNADLILCNG 80 (294) Q Consensus 20 ~~~~~~Vv~s~--------~pl~~iv~~I~gd~v~V~~-li~~----g~dpH~y-----e~-tp~d~~~i~~Adliv~~G 80 (294) .+++|.+++-- .-+..+++..+-. |.+ .... ..+|+.. .. .+.-...+.+||+++..| T Consensus 26 ~a~rP~ii~G~~~~~~~a~~~l~~lae~~~~P---v~~t~~~kg~~~e~~p~~~G~~~g~~~~~~~~~~~~~aDlii~iG 102 (163) T 2vbf_A 26 NAQKPVVIAGHEVISFGLEKTVTQFVSETKLP---ITTLNFGKSAVDESLPSFLGIYNGKLSEISLKNFVESADFILMLG 102 (163) T ss_dssp HCSSEEEEECHHHHHTTCHHHHHHHHHHHCCC---EEECSTTTTSSCTTSTTEEEECCGGGSCHHHHHHHHHCSEEEEES T ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCEEEEE T ss_conf 33551787411233310466777776414787---423454334345788656666523555312443303665104762 Q ss_pred CCCCHHHHHHHHHCCCCCCCCCC Q ss_conf 76106899999742355752111 Q gi|254780537|r 81 LHLEETYMKYFTNLKKGTKIITV 103 (294) Q Consensus 81 ~~~E~~~~~~~~~~~~~~~~i~~ 103 (294) ..+-.+.........++.++|.+ T Consensus 103 ~~~~~~~~~~~~~~~~~~~~I~i 125 (163) T 2vbf_A 103 VKLTDSSTGAFTHHLDENKMISL 125 (163) T ss_dssp CCCCGGGTTTTCCCCCGGGEEEE T ss_pred EECCCCCCCCCCCCCCCCCCCCC T ss_conf 00133321112332333223345 No 102 >>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural genomics, joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans} (A:1-116) Probab=27.55 E-value=38 Score=14.15 Aligned_cols=20 Identities=5% Similarity=-0.076 Sum_probs=13.7 Q ss_pred CCCHHHHHHHHHHHHHHHHH Q ss_conf 63011122135678999999 Q gi|254780537|r 121 EPNPHAWMSLTNAMIYIENI 140 (294) Q Consensus 121 ~~dpH~Wldp~~~~~~a~~I 140 (294) -.||.+|-||..+..+.+.. T Consensus 33 l~~p~~w~D~~~a~~i~ke~ 52 (116) T 1zbt_A 33 LSDPDVVSDTKRFXELSREE 52 (116) T ss_dssp -----------------CCH T ss_pred HCCCCHHHCHHHHHHHHHHH T ss_conf 70984111999999999999 No 103 >>3kws_A Putative sugar isomerase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} (A:) Probab=27.54 E-value=38 Score=14.15 Aligned_cols=48 Identities=2% Similarity=-0.030 Sum_probs=21.4 Q ss_pred CCEEEEECHH-----HHHH---HHHHCCCEEEEEEEECCCCCCCCCCCCHHHHH-HHCCCCEEEE Q ss_conf 8289997528-----9999---99851891489996268898012022712457-7603789999 Q gi|254780537|r 23 KKVVLSSFSI-----IGDI---TQNIAKDLVTVTTLVEAGNDSHSYQVTSADAI-KIQNADLILC 78 (294) Q Consensus 23 ~~~Vv~s~~p-----l~~i---v~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~-~i~~Adliv~ 78 (294) ++++..+++. +.+. +++.|-+.+++. +. .+.-.+++++ .+.+..+-+. T Consensus 25 ~~~ig~~~~~~~~~~l~~~~~~~~~~G~~~iEl~---~~-----~~~~~~~~l~~~l~~~gl~v~ 81 (287) T 3kws_A 25 ELKLSFQEGIAPGESLNEKLDFXEKLGVVGFEPG---GG-----GLAGRVNEIKQALNGRNIKVS 81 (287) T ss_dssp CCEEEEETTSSCCSSHHHHHHHHHHTTCCEEECB---ST-----TCGGGHHHHHHHHTTSSCEEC T ss_pred CHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEC---CC-----CCHHHHHHHHHHHHHHCCEEE T ss_conf 2137677267899899999999998299999978---97-----445459999999998399589 No 104 >>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Flavobacterium heparinium} (A:1-474) Probab=27.46 E-value=38 Score=14.14 Aligned_cols=47 Identities=13% Similarity=0.005 Sum_probs=26.0 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCE-EEEECHHHHHHHHHHC-CCEEEE Q ss_conf 9269999999998604643358828-9997528999999851-891489 Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKV-VLSSFSIIGDITQNIA-KDLVTV 47 (294) Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~-Vv~s~~pl~~iv~~I~-gd~v~V 47 (294) |||+++++++++...+..+.+.... .+..+..++..+.... ||.+.| T Consensus 1 Mk~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~tiq~Ai~~a~~GdtI~v 49 (474) T 1dbg_A 1 MKMLNKLAGYLLPIMVLLNVAPCLGQVVASNETLYQVVKEVKPGGLVQI 49 (474) T ss_dssp -------------------------CEECSHHHHHHHHHHCCTTCEEEE T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCEEECCCHHHHHHHHHHCCCCCEEEE T ss_conf 9069999999999999860120100550883899999971899999998 No 105 >>2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori} (A:) Probab=27.07 E-value=38 Score=14.09 Aligned_cols=63 Identities=13% Similarity=0.036 Sum_probs=46.0 Q ss_pred CCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHC---CCCCEEEEEECCCCHHHHHHHHHHHCC Q ss_conf 84473699826652145775297288722688640007899999997620---169718998278997999999998299 Q gi|254780537|r 181 DPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMR---SHKIKFIFSESTNSDQPAKQVAYETNA 257 (294) Q Consensus 181 p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik---~~~v~~if~e~~~~~~~~~~ia~e~~~ 257 (294) +..+..+|+|.|.| .+..+..||+.++.++.++|+ ..+++++ +....++.-+..++.+.++ T Consensus 148 ~~~~~~vIAYEP~w---------------aIGtg~~as~~~i~~~~~~ir~~~~~~~~il-YGGsV~~~n~~~~~~~~~i 211 (233) T 2jgq_A 148 LNYPNLVVAYEPIW---------------AIGTKKSASLEDIYLTHGFLKQILNQKTPLL-YGGSVNTQNAKEILGIDSV 211 (233) T ss_dssp TTCTTEEEEECCGG---------------GTTC--CCCHHHHHHHHHHHHHHSCTTSCEE-EESSCCTTTHHHHHTSTTC T ss_pred CCCHHHHHCCCCHH---------------HCCCCCCCCHHHHHHHHHHHHHHHCCCCEEE-EECCCCHHHHHHHHCCCCC T ss_conf 03124552466222---------------0355544315666666787776515676089-7076887699998578998 Q ss_pred CE Q ss_conf 34 Q gi|254780537|r 258 SY 259 (294) Q Consensus 258 ~~ 259 (294) .- T Consensus 212 DG 213 (233) T 2jgq_A 212 DG 213 (233) T ss_dssp CE T ss_pred CE T ss_conf 86 No 106 >>1txj_A Translationally controlled tumour-associated protein (TCTP) from plasmodium knowlesi,...; structural genomics consortium, SGC; 2.00A {Plasmodium knowlesi} (A:) Probab=26.48 E-value=39 Score=14.02 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=32.4 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH Q ss_conf 35678999999999864318889999998998630145 Q gi|254780537|r 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIR 167 (294) Q Consensus 130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~ 167 (294) -...+.+...|...|.+..|+.-+.|.+++..+.+.+. T Consensus 88 ~~yiK~YmK~ik~~L~e~~perv~~Fk~~a~~~vK~il 125 (171) T 1txj_A 88 SVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHIL 125 (171) T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH T ss_conf 99999999999998765097788999987799999998 No 107 >>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate assisted catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* (A:223-410) Probab=26.36 E-value=40 Score=14.01 Aligned_cols=90 Identities=17% Similarity=0.156 Sum_probs=53.0 Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 57760378999988761068999997423557521112374202221001233463011122135678999999999864 Q gi|254780537|r 67 AIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTA 146 (294) Q Consensus 67 ~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~ 146 (294) ..-++.+|+++... ..|++-..+++....+.++|....+.......+ .+.=+..+|.+...+++.|...+ T Consensus 98 ~~~~~~~d~~i~~s-~~e~~~~~~~Ea~a~g~Pvi~~~~~~~~~~~~~-------~~~g~~~~~~d~~~~a~~i~~l~-- 167 (188) T 3c48_A 98 VAVYRAADIVAVPS-FNESFGLVAMEAQASGTPVIAARVGGLPIAVAE-------GETGLLVDGHSPHAWADALATLL-- 167 (188) T ss_dssp HHHHHHCSEEEECC-SCCSSCHHHHHHHHTTCCEEEESCTTHHHHSCB-------TTTEEEESSCCHHHHHHHHHHHH-- T ss_pred HHHHHHHCCCCCCC-HHHHHHHHHHHHHHCCCEEEEECCCCCHHHHCC-------CCEEEEECCCCHHHHHHHHHHHH-- T ss_conf 99875204310133-344113568888634851999589980776227-------96599978999999999999998-- Q ss_pred HHHHHHHHHHHHHHHHHCCH Q ss_conf 31888999999899863014 Q gi|254780537|r 147 LDPSNAKKYELNAREYSEKI 166 (294) Q Consensus 147 ~dP~~~~~y~~N~~~~~~~l 166 (294) .+|+......+|+..+.++. T Consensus 168 ~~~~~~~~~~~~a~~~~~~y 187 (188) T 3c48_A 168 DDDETRIRMGEDAVEHARTF 187 (188) T ss_dssp HCHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHHC T ss_conf 69999999999999999969 No 108 >>3fj1_A Putative phosphosugar isomerase; YP_167080.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.75A {Silicibacter pomeroyi dss-3} (A:1-193) Probab=25.96 E-value=40 Score=13.96 Aligned_cols=27 Identities=0% Similarity=-0.091 Sum_probs=15.3 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCH Q ss_conf 899999997620169718998278997 Q gi|254780537|r 219 PSMMRHAINQMRSHKIKFIFSESTNSD 245 (294) Q Consensus 219 ~~~l~~~~~~ik~~~v~~if~e~~~~~ 245 (294) ..++.++.+.+|+.|+++|..-...++ T Consensus 104 t~~~~~~~~~ak~~g~~vi~iT~~~~s 130 (193) T 3fj1_A 104 SPDIVAXTRNAGRDGALCVALTNDAAS 130 (193) T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTS T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCC T ss_conf 748999999987759949998447998 No 109 >>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} (A:1-86,A:293-306) Probab=25.78 E-value=41 Score=13.94 Aligned_cols=37 Identities=14% Similarity=0.076 Sum_probs=31.1 Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHH Q ss_conf 6886400078999999976201697189982789979 Q gi|254780537|r 210 PINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQ 246 (294) Q Consensus 210 ~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~ 246 (294) +.++|.+.|.+.-..+.+.+++.+..+.+.+...... T Consensus 11 G~SsE~evSl~Sa~~i~~aL~~~g~~v~~i~~~~~~~ 47 (100) T 1iow_A 11 GTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDV 47 (100) T ss_dssp CSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCG T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCH T ss_conf 6874228499999999999988699799988984118 No 110 >>1cb8_A Protein (chondroitinase AC); lyase, chondroitin degradation; HET: MAN RAM GCU MFU; 1.90A {Flavobacterium heparinum} (A:251-309) Probab=25.60 E-value=41 Score=13.92 Aligned_cols=26 Identities=4% Similarity=-0.004 Sum_probs=17.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 99999864318889999998998630 Q gi|254780537|r 139 NIRKALTALDPSNAKKYELNAREYSE 164 (294) Q Consensus 139 ~I~~~L~~~dP~~~~~y~~N~~~~~~ 164 (294) .....+.++||+|++.|+.-...+.. T Consensus 31 ~~l~r~~~iD~~h~~eY~~i~aR~~~ 56 (59) T 1cb8_A 31 KRLLVAKMIDLKHTEEWADAIARTDS 56 (59) T ss_dssp HHHHHHHHHCGGGHHHHHHHHHHHTT T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHC T ss_conf 99998753392569999999975402 No 111 >>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCNACYLATION; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2vsn_A* (A:364-542) Probab=25.37 E-value=41 Score=13.89 Aligned_cols=95 Identities=12% Similarity=0.104 Sum_probs=46.5 Q ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH Q ss_conf 12457760378999988761068999997423557521112374202221001233463011122135678999999999 Q gi|254780537|r 64 SADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKA 143 (294) Q Consensus 64 p~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~ 143 (294) ..-...++.||+++... .+.+-..+++....+..+|....+.......++. .+...+.. +.+.....+++.|... T Consensus 82 ~~~~~~~~~adi~l~ps--~~~~~~~~~Ea~a~G~pvI~~~~~~~~e~i~~~~--~~~~~~~~-~~~~~~~~l~~~i~~l 156 (179) T 2vsy_A 82 PQYLARYRHADLFLDTH--PYNAHTTASDALWTGCPVLTTPGETFAARVAGSL--NHHLGLDE-MNVADDAAFVAKAVAL 156 (179) T ss_dssp HHHHHHGGGCSEEECCS--SSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHH--HHHHTCGG-GBCSSHHHHHHHHHHH T ss_pred HHHHHHHHCCCEEEECC--CCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHH--HHHCCCCC-CCCCCHHHHHHHHHHH T ss_conf 78999984585898698--9797287999997799989777898236489999--99779950-1459999999999999 Q ss_pred HHHHHHHHHHHHHHHHHHHHCC Q ss_conf 8643188899999989986301 Q gi|254780537|r 144 LTALDPSNAKKYELNAREYSEK 165 (294) Q Consensus 144 L~~~dP~~~~~y~~N~~~~~~~ 165 (294) + .||+....+.+|+.++.++ T Consensus 157 ~--~~~~~~~~~~~~a~~~~~~ 176 (179) T 2vsy_A 157 A--SDPAALTALHARVDVLRRA 176 (179) T ss_dssp H--HCHHHHHHHHHHHHHHHHH T ss_pred H--CCHHHHHHHHHHHHHHHHH T ss_conf 6--5999999999999998862 No 112 >>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} (A:194-372) Probab=25.21 E-value=41 Score=13.87 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=40.5 Q ss_pred CCCCCEEEEECH--------HHHHHHHHHCCCEEEEEEEECCCCC--CCCCCCCHHHHHHHCCCCEEEEECCCCCHH Q ss_conf 358828999752--------8999999851891489996268898--012022712457760378999988761068 Q gi|254780537|r 20 TTQKKVVLSSFS--------IIGDITQNIAKDLVTVTTLVEAGND--SHSYQVTSADAIKIQNADLILCNGLHLEET 86 (294) Q Consensus 20 ~~~~~~Vv~s~~--------pl~~iv~~I~gd~v~V~~li~~g~d--pH~ye~tp~d~~~i~~Adliv~~G~~~E~~ 86 (294) .+++|.|++--. -+-.+++..+=.- +++....|.= -|-+-..+.-...+.+||+|+..|..+..+ T Consensus 19 ~A~rPvIi~G~~~~~~~a~~~l~~lae~~giPv--~~~~~~kg~~p~~~p~~~g~~~~~~~~~aDlil~iG~~~~~~ 93 (179) T 2c31_A 19 NAKRPVIMLGKGAAYAQCDDEIRALVEETGIPF--LPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLNWL 93 (179) T ss_dssp TCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE--EECGGGTTSSCTTCTTBCGGGHHHHHHHCSEEEEESCCCSGG T ss_pred HCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEE T ss_conf 168958999623113447899988787418651--222012455664343221000132224551210236652000 No 113 >>2p0o_A Hypothetical protein DUF871; structural genomics, TIM barrel, PF05913, PSI-2, protein structure initiative; 2.15A {Enterococcus faecalis V583} (A:1-225) Probab=25.19 E-value=42 Score=13.87 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=10.8 Q ss_pred EEEECCCCCCCCCCCCHHHHHH Q ss_conf 9962688980120227124577 Q gi|254780537|r 48 TTLVEAGNDSHSYQVTSADAIK 69 (294) Q Consensus 48 ~~li~~g~dpH~ye~tp~d~~~ 69 (294) +||.-|..|+..|...-+++-+ T Consensus 36 TSL~i~e~~~~~~~~~~~~l~~ 57 (225) T 2p0o_A 36 TSLHIPEDDTSLYRQRLTDLGA 57 (225) T ss_dssp EEECCC-----CHHHHHHHHHH T ss_pred ECCCCCCCCHHHHHHHHHHHHH T ss_conf 0477268887899999999999 No 114 >>1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} (A:) Probab=25.09 E-value=42 Score=13.85 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=49.3 Q ss_pred HHHHHHHCCCC--CCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----------CCEEEE Q ss_conf 89988630784--47369982665214577529728872268864000789999999762016-----------971899 Q gi|254780537|r 172 PLKTRIEKVDP--EKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-----------KIKFIF 238 (294) Q Consensus 172 ~~~~~~~~~p~--~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-----------~v~~if 238 (294) .++..+..++. .++.+++|.|.| .+..+..+|+.++.++.+.|++. +++. + T Consensus 147 ql~~~l~~v~~~~~~~~vIAYEPvw---------------AIGtg~~as~~~i~~v~~~Ir~~~~~~~~~~~~~~v~i-l 210 (255) T 1b9b_A 147 QVREGFYGLDKEEAKRVVIAYEPVW---------------AIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRI-L 210 (255) T ss_dssp HHHHHHTTCCHHHHTTCEEEECCGG---------------GSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEE-E T ss_pred HHHHHHCCCCCCCCCCEEEECCCEE---------------CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCE-E T ss_conf 9876520343002135489647421---------------14666676557777777888888887517000476428-9 Q ss_pred EECCCCHHHHHHHHHHHCCCE Q ss_conf 827899799999999829934 Q gi|254780537|r 239 SESTNSDQPAKQVAYETNASY 259 (294) Q Consensus 239 ~e~~~~~~~~~~ia~e~~~~~ 259 (294) +....++.-+..++...++.- T Consensus 211 YGGSV~~~N~~~l~~~~~vDG 231 (255) T 1b9b_A 211 YGGSIKPDNFLGLIVQKDIDG 231 (255) T ss_dssp EESSCCHHHHTTTSSSTTCCE T ss_pred ECCCCCHHHHHHHHCCCCCCE T ss_conf 728989889999956779997 No 115 >>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Bacillus brevis} (A:67-173) Probab=25.02 E-value=42 Score=13.85 Aligned_cols=77 Identities=8% Similarity=0.037 Sum_probs=44.6 Q ss_pred HHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEEC--CCCCCCCCCHHHHHHHHHHHCCCCCEEE Q ss_conf 98630145533789988630784473699826652145775297288722--6886400078999999976201697189 Q gi|254780537|r 160 REYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLW--PINSDSERSPSMMRHAINQMRSHKIKFI 237 (294) Q Consensus 160 ~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~--~~~~~~eps~~~l~~~~~~ik~~~v~~i 237 (294) +++..+...+-..++.. .+..+++..+-..+...|+.-.+|+-..+.. .+++ ..++.++.. .++..+.+++ T Consensus 2 ~el~~~~~~la~~L~~~--Gi~~g~~V~i~~~n~~~~~~~~~a~~~~G~~~v~i~~--~~~~~~l~~---~l~~~~~~~i 74 (107) T 1amu_A 2 HELNVKANQLARIFIEK--GIGKDTLVGIMMEKSIDLFIGILAVLKAGGAYVPIDI--EYPKERIQY---ILDDSQARML 74 (107) T ss_dssp HHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEECCT--TSCHHHHHH---HHHHHTCSEE T ss_pred HHHHHHHHHHHHHHHHC--CCCCCCEEEEEECCCHHHHHHHHHHHHHCCEEEEECC--CCCHHHHHH---HHHHCCCCEE T ss_conf 99999999999999974--9688499999938989999999999986969998689--899999999---9974487468 Q ss_pred EEECCC Q ss_conf 982789 Q gi|254780537|r 238 FSESTN 243 (294) Q Consensus 238 f~e~~~ 243 (294) |++... T Consensus 75 i~~~~~ 80 (107) T 1amu_A 75 LTQKHL 80 (107) T ss_dssp EECGGG T ss_pred EEHHHH T ss_conf 611556 No 116 >>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, transferase; HET: GLC PLP; 1.80A {Escherichia coli} (A:456-777) Probab=24.85 E-value=42 Score=13.82 Aligned_cols=78 Identities=13% Similarity=-0.024 Sum_probs=46.8 Q ss_pred HHHHH-HCCCCEEEEECC-CCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 24577-603789999887-6106899999742355752111237420222100123346301112213567899999999 Q gi|254780537|r 65 ADAIK-IQNADLILCNGL-HLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRK 142 (294) Q Consensus 65 ~d~~~-i~~Adliv~~G~-~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~ 142 (294) .++.. ++.+|+++.... .+|++-.-.++....+..+|....|.......+... +++ -.+-.+|.+...+++.|.. T Consensus 161 ~~~~~~~~~~Di~v~PS~~~~E~fG~v~lEAM~~G~pvvat~~GG~~E~V~~~~~-~~g--tg~~~~~~~~~~l~~~i~~ 237 (322) T 1l5w_A 161 SAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGE-ENI--FIFGHTVEQVKAILAKGYD 237 (322) T ss_dssp HHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEEECSCTTHHHHHHHHCG-GGS--EECSCCHHHHHHHHHHCCC T ss_pred HHHHHHHCCCCHHHCCCCCCCCCCCCHHHHHHHCCCEEEECCCCHHHHHHHHCCC-CCE--EEECCCHHHHHHHHHCCCC T ss_conf 9999873511154408999745577347799976970660466448998885373-436--8835866778888754888 Q ss_pred HHH Q ss_conf 986 Q gi|254780537|r 143 ALT 145 (294) Q Consensus 143 ~L~ 145 (294) .+. T Consensus 238 ~l~ 240 (322) T 1l5w_A 238 PVK 240 (322) T ss_dssp HHH T ss_pred HHH T ss_conf 688 No 117 >>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} (A:1-129) Probab=24.25 E-value=43 Score=13.75 Aligned_cols=45 Identities=7% Similarity=0.013 Sum_probs=34.8 Q ss_pred CCHHHHHHHHHHHCCCCCEEE-EEECCCCHHHHHHHHHHHCCCEEE Q ss_conf 078999999976201697189-982789979999999982993444 Q gi|254780537|r 217 RSPSMMRHAINQMRSHKIKFI-FSESTNSDQPAKQVAYETNASYGG 261 (294) Q Consensus 217 ps~~~l~~~~~~ik~~~v~~i-f~e~~~~~~~~~~ia~e~~~~~~~ 261 (294) .++.+..+..+.+-+.+++|| |+.....+..+-.++++.|+++.. T Consensus 64 l~~~~~~~~~~~~~~~~~~~iiit~~~~~~~~i~~~a~~~~iPil~ 109 (129) T 1ko7_A 64 LPDEERKGRMRKLCRPETPAIIVTRDLEPPEELIEAAKEHETPLIT 109 (129) T ss_dssp SCHHHHTTHHHHHCCTTCCCEEECTTCCCCHHHHHHHHHTTCCEEE T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEE T ss_conf 8999999999997367998899979999989999999981983998 No 118 >>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid binding, structural genomics; HET: Z99 NAG; 1.90A {Homo sapiens} PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* (A:181-319,A:446-496) Probab=23.97 E-value=44 Score=13.72 Aligned_cols=46 Identities=15% Similarity=-0.062 Sum_probs=25.8 Q ss_pred HHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEE Q ss_conf 1457752972887226886400078999999976201697189982 Q gi|254780537|r 195 VYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE 240 (294) Q Consensus 195 ~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e 240 (294) .-.++..|+.+.....+......+..+.......+++.+.++|+.- T Consensus 38 ~~~~~~~gi~I~~~~~~~~~~~~~~~d~~~~l~~i~~~~a~vVv~~ 83 (190) T 3ks9_A 38 KELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCF 83 (190) T ss_dssp HHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHTTTTTTCEEEEE T ss_pred HHHHHHCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEE T ss_conf 9999975987999998268998789999999988740264279998 No 119 >>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} (A:184-348) Probab=23.93 E-value=44 Score=13.71 Aligned_cols=82 Identities=11% Similarity=0.147 Sum_probs=41.2 Q ss_pred CCCCCEEEEEC--------HHHHHHHHHHCCCEEEEEEEECCCCCCCCCC----------CCHHHHHHHCCCCEEEEECC Q ss_conf 35882899975--------2899999985189148999626889801202----------27124577603789999887 Q gi|254780537|r 20 TTQKKVVLSSF--------SIIGDITQNIAKDLVTVTTLVEAGNDSHSYQ----------VTSADAIKIQNADLILCNGL 81 (294) Q Consensus 20 ~~~~~~Vv~s~--------~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye----------~tp~d~~~i~~Adliv~~G~ 81 (294) .+++|.|++-- ..+..+++.++-.- +++....+.=|++.. -++.-...+++||+++..|. T Consensus 25 ~A~rP~ii~G~~~~~~~a~~~l~~lae~~g~pv--~~t~~~k~~~~~~hp~~~G~~~g~~~~~~~~~~~~~aDlil~iG~ 102 (165) T 2vbi_A 25 KSASPVMLLGSKLRAANALAATETLADKLQCAV--TIMAAAKGFFPEDHAGFRGLYWGEVSNPGVQELVETSDALLCIAP 102 (165) T ss_dssp TCSCEEEEECTTTTTTTCHHHHHHHHHHHCCEE--EEEGGGTTSSCTTSTTEEEEECGGGSCTTHHHHHHTCSEEEEESC T ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEE--EECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCC T ss_conf 623245323222333322223222124321035--530234546875465345640003446433222124411333465 Q ss_pred CCCHHHHHHHHHCCCCCCCCCC Q ss_conf 6106899999742355752111 Q gi|254780537|r 82 HLEETYMKYFTNLKKGTKIITV 103 (294) Q Consensus 82 ~~E~~~~~~~~~~~~~~~~i~~ 103 (294) .+..+.........+..++|.+ T Consensus 103 ~~~~~~~~~~~~~~~~~~~I~i 124 (165) T 2vbi_A 103 VFNDYSTVGWSAWPKGPNVILA 124 (165) T ss_dssp CCBTTTTTTTTSCCCSTTEEEE T ss_pred CCCCCCCCHHCCCCCCCCCEEE T ss_conf 4443321000013677531342 No 120 >>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} (A:28-260) Probab=23.66 E-value=44 Score=13.68 Aligned_cols=128 Identities=5% Similarity=-0.071 Sum_probs=60.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH-----HHHHHHHHHHHCCCCCCCEEEE--ECCCCHHHHHHCC Q ss_conf 35678999999999864318889999998998630145-----5337899886307844736998--2665214577529 Q gi|254780537|r 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIR-----NSILPLKTRIEKVDPEKRWFVT--SEGCLVYLAEDFG 202 (294) Q Consensus 130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~-----~l~~~~~~~~~~~p~~~~~~v~--~H~af~Y~~~~yG 202 (294) |+-...+.+.+......-....-+.+++....|...=. .-...+...+..+...+..++. .|+.+....+.+| T Consensus 5 ~~v~~a~~~~~~~~~~~~~~~~~~~l~~~ia~~~g~e~~i~~~sgt~a~~~al~~l~~~~~vi~~~~~~~~~~~~~~~~g 84 (233) T 2po3_A 5 ARLYERLDRALDSQWLSNGGPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAGLTGEVIMPSMTFAATPHALRWIG 84 (233) T ss_dssp HHHHHHHHHHHHHTCCSSSCHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHTCCSEEEEESSSCTHHHHHHHHTT T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHCCCCCEEEEECCEEECCHHHHHHHH T ss_conf 99999999999669867899789999999999978396999667899999999975998979984222405556765311 Q ss_pred CEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC---CCCHHHHHHHHHHHCCCEE Q ss_conf 728872268864000789999999762016971899827---8997999999998299344 Q gi|254780537|r 203 FKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSES---TNSDQPAKQVAYETNASYG 260 (294) Q Consensus 203 l~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~---~~~~~~~~~ia~e~~~~~~ 260 (294) .+.+.+.--..+..+. +.++.+.+++......+..+ ..+-+.+..++++.|+.+. T Consensus 85 ~~~~~~~~~~~~~~~~---~e~~~~~~~~~~~~~~~~~~~g~~~~~~~i~~~a~~~g~~li 142 (233) T 2po3_A 85 LTPVFADIDPDTGNLD---PDQVAAAVTPRTSAVVGVHLWGRPCAADQLRKVADEHGLRLY 142 (233) T ss_dssp CEEEEECBCTTTSSBC---HHHHGGGCCTTEEEEEEECGGGCCCCHHHHHHHHHHTTCEEE T ss_pred CCCCCCCCCCCCCCCC---HHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCC T ss_conf 1200134333323578---777402001133333231356865333300112211572400 No 121 >>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} (A:93-172) Probab=23.49 E-value=45 Score=13.66 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=36.5 Q ss_pred CCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHHHHHHHC Q ss_conf 52145775297288722688640007899999997620169718998278997--99999999829 Q gi|254780537|r 193 CLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSD--QPAKQVAYETN 256 (294) Q Consensus 193 af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~--~~~~~ia~e~~ 256 (294) ++.|+++.+|++...+.. +. .++ .-++.++..+..++.++..... +.++.++++.+ T Consensus 15 alA~~a~~~Gi~~~i~~p---~~-~~~----~k~~~l~~~GA~V~~~~~~~~~~~~~a~~~a~e~~ 72 (80) T 1p5j_A 15 AAAYAARQLGVPATIVVP---GT-TPA----LTIERLKNEGATCKVVGELLDEAFELAKALAKNNP 72 (80) T ss_dssp HHHHHHHHHTCCEEEEEC---TT-CCH----HHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHST T ss_pred HHHHHHHHCCCCCEEECC---CC-CCH----HHEECCCCCCEEEEEECCCCCHHHHHHHHHHHHCC T ss_conf 999999985998342026---88-844----53112345742899831221046778899986268 No 122 >>2o2z_A Hypothetical protein; NP_244435.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A (A:) Probab=23.28 E-value=43 Score=13.74 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=20.0 Q ss_pred HHHHHHHHCCCEEEEEEEECCCCCC--------CCCCCCHHHHHH Q ss_conf 9999998518914899962688980--------120227124577 Q gi|254780537|r 33 IGDITQNIAKDLVTVTTLVEAGNDS--------HSYQVTSADAIK 69 (294) Q Consensus 33 l~~iv~~I~gd~v~V~~li~~g~dp--------H~ye~tp~d~~~ 69 (294) +..+.+.+..=..+++.+++.+.|- +..-|-|-|++. T Consensus 16 ~~~ll~gl~~~~~~it~IV~v~DdGGSsg~Lr~~~g~~~~gDir~ 60 (323) T 2o2z_A 16 LSVLLRGLKTFPVSITAIVTVADDGGSSGRLRKELDIPPPGDVRN 60 (323) T ss_dssp HHHHHHHHTTSSEEEEEEECCCCCSHHHHHHHHHHTSCCCHHHHH T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCEEHHHHCCCCCHHHHHH T ss_conf 899999997489984999988528834312764169998179999 No 123 >>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens} (A:261-394) Probab=22.72 E-value=46 Score=13.56 Aligned_cols=67 Identities=9% Similarity=0.045 Sum_probs=49.8 Q ss_pred HHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCC-EEEEEECCCCHHHHHHHHHHHCCCEEEEEECC Q ss_conf 57752972887226886400078999999976201697-18998278997999999998299344432012 Q gi|254780537|r 197 LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKI-KFIFSESTNSDQPAKQVAYETNASYGGVLYVD 266 (294) Q Consensus 197 ~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v-~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d 266 (294) .+++||+..-.-.. ..-.+|+++.++.+..++.++ +++++--+.+..+.-.++..+..|++.+.... T Consensus 27 ~L~~~gi~~~~~V~---SaHR~p~~~~~~~~~~~~~~~~~viI~~AG~sa~Lpgvia~~t~~PVIgvP~~~ 94 (134) T 2h31_A 27 ACGNFGIPCELRVT---SAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGPVXSGNTAYPVISCPPLT 94 (134) T ss_dssp HHHHTTCCEEEEEC---CTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHHHHHHHCSSCEEECCCCC T ss_pred HHHHCCCCEEEEEE---ECCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHEECCCCCCEEECCCCC T ss_conf 99866775489998---467698999999999987699789999476322445550004789979806876 No 124 >>3iv4_A Putative oxidoreductase; APC23140, meticillin-resistant staphylococcus aureus, thioredoxin fold, structural genomics, PSI- 2; HET: MSE; 1.50A {Staphylococcus aureus subsp} (A:) Probab=22.69 E-value=46 Score=13.55 Aligned_cols=46 Identities=9% Similarity=-0.013 Sum_probs=41.1 Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCE Q ss_conf 4000789999999762016971899827899799999999829934 Q gi|254780537|r 214 DSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASY 259 (294) Q Consensus 214 ~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~ 259 (294) .-..|..-+.++.+++.++++++.|..-+....+-+.||+.+|++- T Consensus 35 tC~IS~~a~~efe~~~~~~~~~~yyL~v~~~R~vSn~IAe~~~V~H 80 (112) T 3iv4_A 35 TCPISANAYDQFNKFLYERDXDGYYLIVQQERDLSDYIAKKTNVKH 80 (112) T ss_dssp TCHHHHHHHHHHHHHHHHHTCCEEEEEGGGGHHHHHHHHHHHTCCC T ss_pred CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCHHHHHHHHHHCCCC T ss_conf 8740499999998642235687799984106557899999959966 No 125 >>1vq8_P 50S ribosomal protein L19E; ribosome 50S, protein-protein complex, RNA-RNA complex, protein-RNA complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} (P:1-57) Probab=22.62 E-value=21 Score=15.92 Aligned_cols=20 Identities=10% Similarity=0.189 Sum_probs=14.4 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 11221356789999999998 Q gi|254780537|r 125 HAWMSLTNAMIYIENIRKAL 144 (294) Q Consensus 125 H~Wldp~~~~~~a~~I~~~L 144 (294) -+|+||+....++++++..- T Consensus 21 rVWlDP~~~~eI~~A~sR~~ 40 (57) T 1vq8_P 21 RVWFNPERQGDIADAITRED 40 (57) T ss_dssp GEEECGGGHHHHHHCCSHHH T ss_pred EEEECCHHHHHHHHHHHHHH T ss_conf 06628067779998762999 No 126 >>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} (A:43-148) Probab=22.61 E-value=46 Score=13.54 Aligned_cols=66 Identities=14% Similarity=0.231 Sum_probs=39.3 Q ss_pred CCCEEEEECC-----CCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCH----HHHHHHHH Q ss_conf 4736998266-----52145775297288722688640007899999997620169718998278997----99999999 Q gi|254780537|r 183 EKRWFVTSEG-----CLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSD----QPAKQVAY 253 (294) Q Consensus 183 ~~~~~v~~H~-----af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~----~~~~~ia~ 253 (294) ..+.+++... ++.|.++.+|++...+.. +. .+ .+-++.++..|..+++++...+- ..++.+++ T Consensus 24 g~~~iv~~SsGN~g~alA~~a~~~g~~~~iv~p---~~-~~----~~k~~~l~~~Ga~V~~v~~~~~~~~~~~~a~~~~~ 95 (106) T 1z7w_A 24 GESVLIEPTSGNTGVGLAFTAAAKGYKLIITMP---AS-MS----TERRIILLAFGVELVLTDPAKGMKGAIAKAEEILA 95 (106) T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEE---TT-SC----HHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHH T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEE---EC-CC----HHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHH T ss_conf 984699746760778999999862684599640---02-30----45543321378607985034443321056888874 Q ss_pred HHC Q ss_conf 829 Q gi|254780537|r 254 ETN 256 (294) Q Consensus 254 e~~ 256 (294) +.+ T Consensus 96 ~~~ 98 (106) T 1z7w_A 96 KTP 98 (106) T ss_dssp HCT T ss_pred CCC T ss_conf 179 No 127 >>2gi4_A Possible phosphotyrosine protein phosphatase; low molecular weight, protein tyrosine phosphatase, bacterial phosphatase; NMR {Campylobacter jejuni} (A:) Probab=22.46 E-value=47 Score=13.52 Aligned_cols=78 Identities=14% Similarity=0.177 Sum_probs=37.8 Q ss_pred CCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 89801202271245776037899998876106899999742355752111237420222100123346301112213567 Q gi|254780537|r 54 GNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNA 133 (294) Q Consensus 54 g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~ 133 (294) |.|+..+.+.+=+...+.++|+||......-..+.+..... ..++..+.+... +.......||+..-+...+ T Consensus 63 Gid~s~~~sr~l~~~~~~~~DlIi~m~~~~~~~l~~~~p~~--~~~v~~l~~~~~------~~~~~di~DP~~~~~f~~~ 134 (156) T 2gi4_A 63 NIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTNT--QNKVLKITDFSP------SLNYDEVPDPWYSGNFDET 134 (156) T ss_dssp SCSCCCCCCCBCCHHHHTTCSEEECCCHHHHHHHHHHSCGG--GGGEECTTTTCS------SCCCCSSCHHHHTSCSHHH T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC--CCEEEECCCCCC------CCCCCCCCCCCCCCHHHHH T ss_conf 34432001101078888860200322377778775330242--011763102065------4589948899998879999 Q ss_pred HHHHHH Q ss_conf 899999 Q gi|254780537|r 134 MIYIEN 139 (294) Q Consensus 134 ~~~a~~ 139 (294) ....+. T Consensus 135 ~~~i~~ 140 (156) T 2gi4_A 135 YKILSL 140 (156) T ss_dssp HHHHHH T ss_pred HHHHHH T ss_conf 999999 No 128 >>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA- directed RNA polymerase, primosome, late protein; HET: DNA; 2.90A {Enterobacteria phage T7} (A:138-255) Probab=22.40 E-value=47 Score=13.51 Aligned_cols=104 Identities=9% Similarity=0.037 Sum_probs=59.9 Q ss_pred CCCEEEEECCCCHHHH-HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC-CHHHHHHHHHHHCCCEE Q ss_conf 4736998266521457-752972887226886400078999999976201697189982789-97999999998299344 Q gi|254780537|r 183 EKRWFVTSEGCLVYLA-EDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN-SDQPAKQVAYETNASYG 260 (294) Q Consensus 183 ~~~~~v~~H~af~Y~~-~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~-~~~~~~~ia~e~~~~~~ 260 (294) +...++.....+.-++ ...|++.........+...+++.+..+.+....-+--+|..+.-. ..+.++.+++..+..-. T Consensus 12 ~~~~v~i~EG~~Dals~~~~g~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~iii~~DnD~aG~~~~~~~~~~l~~~~~ 91 (118) T 1nui_A 12 GGKKIVVTEGEIDMLTVMELQDCKYPVVSLGHGASAAKKTCAANYEYFDQFEQIILMFDMDEAGRKAVEEAAQVLPAGKV 91 (118) T ss_dssp CBSCCEEESSHHHHHHHHHHHTTCSCEECCTTTTTTHHHHHHHTHHHHTTBSCEEEECCSSHHHHHHHHHHHHHSCTTTE T ss_pred CCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCE T ss_conf 87669997881369999998426886543676301214677888887436775999778998999999999987577879 Q ss_pred EEEECCCCCCCCCCCCCHHHHH-HHHHHHHHHHCC Q ss_conf 4320123787778868999999-999999986209 Q gi|254780537|r 261 GVLYVDSLSKPDGPAPTYLDLL-RFSLTKIVDTLF 294 (294) Q Consensus 261 ~~~~~d~l~~~~~~~~~Y~~~m-~~N~~~l~~aL~ 294 (294) .+.. .++.++-++. ....+.+.+.|| T Consensus 92 ~~~~--------p~~kD~nd~l~~~g~~~~~~~i~ 118 (118) T 1nui_A 92 RVAV--------LPCKDANECHLNGHDREIMEQVW 118 (118) T ss_dssp EECC--------CSSSSHHHHHTTTTHHHHHHHHC T ss_pred EEEE--------CCCCCHHHHHHCCCHHHHHHHHC T ss_conf 9950--------89879899988199999999759 No 129 >>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} (A:259-455) Probab=22.31 E-value=47 Score=13.50 Aligned_cols=63 Identities=27% Similarity=0.428 Sum_probs=35.3 Q ss_pred CCCCCEEEEECHH---------HHHHHHHHCCCEEEEEE-EECCCC----CCCCC-----CCCHHHHHHHCCCCEEEEEC Q ss_conf 3588289997528---------99999985189148999-626889----80120-----22712457760378999988 Q gi|254780537|r 20 TTQKKVVLSSFSI---------IGDITQNIAKDLVTVTT-LVEAGN----DSHSY-----QVTSADAIKIQNADLILCNG 80 (294) Q Consensus 20 ~~~~~~Vv~s~~p---------l~~iv~~I~gd~v~V~~-li~~g~----dpH~y-----e~tp~d~~~i~~Adliv~~G 80 (294) .+++|.|++-... +..+++..+-. |.+ ....|. +|+.. --++.-...+++||++|..| T Consensus 30 ~A~rPvii~G~~~~~~~~a~~~l~~lae~~~ip---v~~t~~~kg~~~~~~p~~~G~~G~~~~~~~~~~i~~aDlil~iG 106 (197) T 1t9b_A 30 LAKKPVLYVGAGILNHADGPRLLKELSDRAQIP---VTTTLQGLGSFDQEDPKSLDMLGMHGCATANLAVQNADLIIAVG 106 (197) T ss_dssp TCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCC---EEECGGGTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEES T ss_pred HCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCC---EEECCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHCCCCEEEEEC T ss_conf 377987983266430046899999998721412---79866667766875640122145423588998771599899989 Q ss_pred CCCCH Q ss_conf 76106 Q gi|254780537|r 81 LHLEE 85 (294) Q Consensus 81 ~~~E~ 85 (294) ..+.. T Consensus 107 ~~~~~ 111 (197) T 1t9b_A 107 ARFDD 111 (197) T ss_dssp CCCCT T ss_pred CCCCC T ss_conf 97774 No 130 >>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} (A:450-608) Probab=22.28 E-value=47 Score=13.50 Aligned_cols=34 Identities=0% Similarity=-0.105 Sum_probs=13.0 Q ss_pred HHHCCCCCEEEEEECCCCHH-HH--HHHHHHHCCCEE Q ss_conf 76201697189982789979-99--999998299344 Q gi|254780537|r 227 NQMRSHKIKFIFSESTNSDQ-PA--KQVAYETNASYG 260 (294) Q Consensus 227 ~~ik~~~v~~if~e~~~~~~-~~--~~ia~e~~~~~~ 260 (294) ..+.++.+-.+|..+..+.. .. -..+++.|++++ T Consensus 59 ~~~~~~d~vi~is~~g~~~e~~~~~~~~ak~~g~~vi 95 (159) T 2bpl_A 59 ALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLY 95 (159) T ss_dssp GGCCTTCEEEEEECSSTTHHHHHHHHHHHHHTTCEEE T ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEE T ss_conf 6607997099997797369999999999996699599 No 131 >>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; NP_391141.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis} (A:1-155) Probab=22.01 E-value=48 Score=13.46 Aligned_cols=27 Identities=11% Similarity=-0.087 Sum_probs=16.4 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCH Q ss_conf 899999997620169718998278997 Q gi|254780537|r 219 PSMMRHAINQMRSHKIKFIFSESTNSD 245 (294) Q Consensus 219 ~~~l~~~~~~ik~~~v~~if~e~~~~~ 245 (294) ..++.++.+.+|++++++|..-...++ T Consensus 87 t~~~~~~~~~a~~~g~~~I~iT~~~~s 113 (155) T 3eua_A 87 TPETVKAAAFARGKGALTIAXTFKPES 113 (155) T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTS T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCCC T ss_conf 867999998655302213321276321 No 132 >>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} (A:91-179) Probab=21.90 E-value=48 Score=13.45 Aligned_cols=67 Identities=12% Similarity=0.009 Sum_probs=45.2 Q ss_pred CCCEEEEECCCC----HHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCC Q ss_conf 473699826652----1457752972887226886400078999999976201697189982789979999999982993 Q gi|254780537|r 183 EKRWFVTSEGCL----VYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNAS 258 (294) Q Consensus 183 ~~~~~v~~H~af----~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~ 258 (294) .++.-++.++.. .-+.+-+|++..-.. --++.++.+.++.+++.|+++|. .+..+..+|++.|.+ T Consensus 16 ~~kiaivgf~~~~~~~~~~~~ll~~~i~~~~------~~~~~e~~~~i~~l~~~G~~vVI-----G~~~~~~~A~~~Gl~ 84 (89) T 2pju_A 16 TSSIGVVTYQETIPALVAFQKTFNLRLDQRS------YITEEDARGQINELKANGTEAVV-----GAGLITDLAEEAGMT 84 (89) T ss_dssp TSCEEEEEESSCCHHHHHHHHHHTCCEEEEE------ESSHHHHHHHHHHHHHTTCCEEE-----ESHHHHHHHHHTTSE T ss_pred CCCEEEEECCCCCHHHHHHHHHHCCCEEEEE------ECCHHHHHHHHHHHHHCCCCEEE-----CCHHHHHHHHHCCCC T ss_conf 8978999377514699999999599449999------65889999999999986997999-----986999999984997 Q ss_pred EE Q ss_conf 44 Q gi|254780537|r 259 YG 260 (294) Q Consensus 259 ~~ 260 (294) .+ T Consensus 85 ~v 86 (89) T 2pju_A 85 GI 86 (89) T ss_dssp EE T ss_pred EE T ss_conf 89 No 133 >>2q5c_A NTRC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824} (A:79-168) Probab=21.54 E-value=49 Score=13.40 Aligned_cols=66 Identities=12% Similarity=0.070 Sum_probs=44.6 Q ss_pred CCEEEEECC----CCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCE Q ss_conf 736998266----5214577529728872268864000789999999762016971899827899799999999829934 Q gi|254780537|r 184 KRWFVTSEG----CLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASY 259 (294) Q Consensus 184 ~~~~v~~H~----af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~ 259 (294) ++.-++.++ .+..+++-+|++..-..- -++.++.+.++.+++.|+++|. .+..+..+|++.|.+. T Consensus 17 ~kiaivgf~~~~~~~~~~~~ll~~~i~~~~~------~~~~e~~~~i~~l~~~G~~vVI-----G~~~~~~~A~~~Gl~~ 85 (90) T 2q5c_A 17 NELALIAYKHSIVDKHEIEAMLGVKIKEFLF------SSEDEITTLISKVKTENIKIVV-----SGKTVTDEAIKQGLYG 85 (90) T ss_dssp SEEEEEEESSCSSCHHHHHHHHTCEEEEEEE------CSGGGHHHHHHHHHHTTCCEEE-----ECHHHHHHHHHTTCEE T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCEEEEEE------CCHHHHHHHHHHHHHCCCCEEE-----CCHHHHHHHHHCCCCE T ss_conf 9789995786136899999995994599996------5889999999999986997999-----9879999999849968 Q ss_pred E Q ss_conf 4 Q gi|254780537|r 260 G 260 (294) Q Consensus 260 ~ 260 (294) + T Consensus 86 v 86 (90) T 2q5c_A 86 E 86 (90) T ss_dssp E T ss_pred E T ss_conf 9 No 134 >>2z4t_A Beta-galactoside alpha-2,6-sialyltransferase; GT-B fold, immunoglobulin-like beta-sandwich fold, glycosyltransferase; HET: LBT C5P; 2.50A {Photobacterium SP} (A:1-111) Probab=21.37 E-value=33 Score=14.54 Aligned_cols=57 Identities=14% Similarity=0.299 Sum_probs=25.6 Q ss_pred CHHHHHHHHHHHHHCCCCCCCCCCEEEEECHHHHHHHHHHC-CCEEEEEEEECCC--CCCCCCCCC Q ss_conf 92699999999986046433588289997528999999851-8914899962688--980120227 Q gi|254780537|r 1 MLRYFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIA-KDLVTVTTLVEAG--NDSHSYQVT 63 (294) Q Consensus 1 M~r~~~~l~~~~~~~~~~~~~~~~~Vv~s~~pl~~iv~~I~-gd~v~V~~li~~g--~dpH~ye~t 63 (294) |||++++.++++..|......-+-.|+-++. ..|. .+.++++.|=.++ -+.|+|+-+ T Consensus 1 MK~fllls~ilLsACN~~~~nt~~~v~s~in------~~vie~etyql~PId~~~~sF~shSW~QT 60 (111) T 2z4t_A 1 MKNFLLLTLILLTACNNSEENTQSIIKNDIN------KTIIDEEYVNLEPINQSNISFTKHSWVQT 60 (111) T ss_dssp ---------------------CCCCEEEEEE------EEEETTCEEEECSCCSSSCCEEEEEEEEE T ss_pred CCCEEEHHHHHHHHHCCCCHHHHHHHHCCCC------CCCCCCCEEEEEECCCCCCCCHHHHHHHH T ss_conf 9615304889998706972115778651554------22002532543455889865101027664 No 135 >>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* (A:183-372) Probab=21.21 E-value=49 Score=13.36 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=43.4 Q ss_pred CCCCCEEEEECHH--------HHHHHHHHCCCEEEEEEEECCC----CCCCCCC-----CCHHHHHHHCCCCEEEEECCC Q ss_conf 3588289997528--------9999998518914899962688----9801202-----271245776037899998876 Q gi|254780537|r 20 TTQKKVVLSSFSI--------IGDITQNIAKDLVTVTTLVEAG----NDSHSYQ-----VTSADAIKIQNADLILCNGLH 82 (294) Q Consensus 20 ~~~~~~Vv~s~~p--------l~~iv~~I~gd~v~V~~li~~g----~dpH~ye-----~tp~d~~~i~~Adliv~~G~~ 82 (294) .+++|.|++-... +..+++..+-.. +++.+..| .+||..- -.+.-...+.+||+++..|.. T Consensus 22 ~A~rPvii~G~~~~~~~a~~~l~~lae~~~iPv--~~t~~~kg~~~~~hp~~~G~~g~~~~~~~~~~l~~aDlil~iG~~ 99 (190) T 2pgn_A 22 AAKNPVILAGGGVARSGGSEALLKLAEMVGVPV--VTTSTGAGVFPETHALAMGSAGFCGWKSANDMMAAADFVLVLGSR 99 (190) T ss_dssp HCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCE--EECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCC T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEE--EECCCCCCCCCCHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCC T ss_conf 234333345653123443899999999829747--623557865541333022456765514566665402220013443 Q ss_pred CCHHHHHHHHHCCCCCCCCCC Q ss_conf 106899999742355752111 Q gi|254780537|r 83 LEETYMKYFTNLKKGTKIITV 103 (294) Q Consensus 83 ~E~~~~~~~~~~~~~~~~i~~ 103 (294) +..+.... .....+.++|.+ T Consensus 100 ~~~~~~~~-~~~~~~~~~i~i 119 (190) T 2pgn_A 100 LSDWGIAQ-GYITKMPKFVHV 119 (190) T ss_dssp CCTTTTTT-TTTCCCCSEEEE T ss_pred CCCCCCCC-CCCCCCCCEEEC T ss_conf 34455300-112356421210 No 136 >>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} (A:122-254,A:330-346) Probab=21.02 E-value=50 Score=13.33 Aligned_cols=78 Identities=13% Similarity=0.133 Sum_probs=43.5 Q ss_pred HCCCCCCCEEEEECCCCH--------HHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC--HHH Q ss_conf 307844736998266521--------4577529728872268864000789999999762016971899827899--799 Q gi|254780537|r 178 EKVDPEKRWFVTSEGCLV--------YLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNS--DQP 247 (294) Q Consensus 178 ~~~p~~~~~~v~~H~af~--------Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~--~~~ 247 (294) ...+.++..++..-+.|+ =..++.|++++..... .++..++..++..|++.+..+|+.-.... ... T Consensus 13 ~~~~~k~vaii~~d~~~G~~~~~~~~~~l~~~G~~vv~~~~~----~~~~~d~~~~i~~i~~~~~d~Ii~~~~~~~~~~~ 88 (150) T 1usg_A 13 ETVKPQRIAIIHDKQQYGEGLARSVQDGLKAANANVVFFDGI----TAGEKDFSALIARLKKENIDFVYYGGYYPEMGQM 88 (150) T ss_dssp HTTCCSSEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEC----CTTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHH T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEEEC----CCCCCCHHHHHHHHHHCCCCEEEEEECCHHHHHE T ss_conf 024552036741652012567877655441344227888733----6211101368888875387469997444344321 Q ss_pred HHHHHHHHCCCEE Q ss_conf 9999998299344 Q gi|254780537|r 248 AKQVAYETNASYG 260 (294) Q Consensus 248 ~~~ia~e~~~~~~ 260 (294) ++. +++.|.+.. T Consensus 89 ~~~-~~~~g~~~~ 100 (150) T 1usg_A 89 LRQ-ARSVGLKTQ 100 (150) T ss_dssp HHH-HHHTTCCCE T ss_pred EEE-CCCCCCCCE T ss_conf 410-122355630 No 137 >>2zkr_p 60S ribosomal protein L19; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} (p:1-57) Probab=20.87 E-value=19 Score=16.22 Aligned_cols=20 Identities=5% Similarity=0.169 Sum_probs=14.5 Q ss_pred HHHHHHHHHHHHHHHHHHHH Q ss_conf 11221356789999999998 Q gi|254780537|r 125 HAWMSLTNAMIYIENIRKAL 144 (294) Q Consensus 125 H~Wldp~~~~~~a~~I~~~L 144 (294) -+|+||+....++.+++..- T Consensus 21 rVWlDP~e~~eI~~A~sR~~ 40 (57) T 2zkr_p 21 KVWLDPNETNEIANANSRQQ 40 (57) T ss_dssp GEEECSTTHHHHHHCCSHHH T ss_pred CEECCHHHHHHHHHHHHHHH T ss_conf 14508277779998766999 No 138 >>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} (A:183-361,A:548-590) Probab=20.73 E-value=51 Score=13.29 Aligned_cols=65 Identities=14% Similarity=0.166 Sum_probs=39.5 Q ss_pred CCCCCEEEEECHH------HHHHHHHHCCCEEEEEEEECCCC----CCCCCCC-----CHHHHHHHCCCCEEEEECCCCC Q ss_conf 3588289997528------99999985189148999626889----8012022-----7124577603789999887610 Q gi|254780537|r 20 TTQKKVVLSSFSI------IGDITQNIAKDLVTVTTLVEAGN----DSHSYQV-----TSADAIKIQNADLILCNGLHLE 84 (294) Q Consensus 20 ~~~~~~Vv~s~~p------l~~iv~~I~gd~v~V~~li~~g~----dpH~ye~-----tp~d~~~i~~Adliv~~G~~~E 84 (294) .+.+|.|++--.. +..++++.+-.. +++....|. +|+..=- ++.-...|.+||+++..|..+- T Consensus 22 ~AkrPvIivG~g~~~a~~~l~~la~~~g~PV--~~t~~~kg~~~e~hp~~~G~~G~~~~~~~~~~l~~aDlVL~vG~~l~ 99 (222) T 1v5e_A 22 NSKRPVIYAGIGTMGHGPAVQELARKIKAPV--ITTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFP 99 (222) T ss_dssp HCSSEEEEECGGGTTCHHHHHHHHHHHTCCE--EECTTCGGGSCTTCTTEEEESSSSSCHHHHHHHHHCSEEEEESCCCT T ss_pred HCCCCEEEEECCCCHHHHHHHHHHHHCCCCC--CCCCCCCCCCCCCCCCHHCCCCCCCCCHHHHHHHHCCCHHCCCCCCC T ss_conf 5789889984001003799998765302322--22222334332332100002234676112334322010000234566 Q ss_pred HH Q ss_conf 68 Q gi|254780537|r 85 ET 86 (294) Q Consensus 85 ~~ 86 (294) .+ T Consensus 100 ~~ 101 (222) T 1v5e_A 100 FS 101 (222) T ss_dssp TT T ss_pred CC T ss_conf 65 No 139 >>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A* (A:1-216) Probab=20.69 E-value=51 Score=13.28 Aligned_cols=28 Identities=4% Similarity=-0.108 Sum_probs=14.8 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCHH Q ss_conf 8999999976201697189982789979 Q gi|254780537|r 219 PSMMRHAINQMRSHKIKFIFSESTNSDQ 246 (294) Q Consensus 219 ~~~l~~~~~~ik~~~v~~if~e~~~~~~ 246 (294) .+++.++.+.+|+.|+++|..-...++. T Consensus 120 t~e~~~~~~~ak~~g~~~i~iT~~~~s~ 147 (216) T 2zj3_A 120 TADTLMGLRYCKERGALTVGITNTVGSS 147 (216) T ss_dssp CHHHHHHHHHHHHTTCEEEEEESCTTCH T ss_pred CHHHHHHHHHHHHCCCEEEEEECCCCCC T ss_conf 7789999999998799399997789986 No 140 >>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic} (A:) Probab=20.65 E-value=32 Score=14.64 Aligned_cols=23 Identities=13% Similarity=0.345 Sum_probs=19.0 Q ss_pred CCHHHHHHHHHHHCCCCCEEEEE Q ss_conf 07899999997620169718998 Q gi|254780537|r 217 RSPSMMRHAINQMRSHKIKFIFS 239 (294) Q Consensus 217 ps~~~l~~~~~~ik~~~v~~if~ 239 (294) -+|.+++++.+..|+.+|++-|. T Consensus 12 gtpeelkklkeeakkanirvtfw 34 (36) T 2ki0_A 12 GTPEELKKLKEEAKKANIRVTFW 34 (36) T ss_dssp CCHHHHHHHHHHHHHHCCCCCBC T ss_pred CCHHHHHHHHHHHHHCCEEEEEE T ss_conf 99899999999877536799860 No 141 >>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A* (A:1-105,A:237-273) Probab=20.26 E-value=52 Score=13.22 Aligned_cols=46 Identities=13% Similarity=0.145 Sum_probs=29.2 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCCCH-HHHHHHHHHHCCCEEEEEE Q ss_conf 899999997620169718998278997-9999999982993444320 Q gi|254780537|r 219 PSMMRHAINQMRSHKIKFIFSESTNSD-QPAKQVAYETNASYGGVLY 264 (294) Q Consensus 219 ~~~l~~~~~~ik~~~v~~if~e~~~~~-~~~~~ia~e~~~~~~~~~~ 264 (294) ...+.+..+++.+.++++|..--+... -..+.+.+...++++.... T Consensus 60 ~~~~~~~~~~L~~~g~~~IVIACNTAsa~~ld~Lr~~~~iPiI~iV~ 106 (142) T 2oho_A 60 KEYTWELVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVVH 106 (142) T ss_dssp HHHHHHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESHT T ss_pred HHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEEC T ss_conf 99999999999855787599961578876378776404676464235 No 142 >>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum} (A:) Probab=20.26 E-value=52 Score=13.22 Aligned_cols=10 Identities=40% Similarity=0.275 Sum_probs=3.1 Q ss_pred HHHHCCCCEE Q ss_conf 5776037899 Q gi|254780537|r 67 AIKIQNADLI 76 (294) Q Consensus 67 ~~~i~~Adli 76 (294) +.+|.+||+| T Consensus 183 l~AI~~AD~I 192 (341) T 2p0y_A 183 IDAIXAADQI 192 (341) T ss_dssp HHHHHHCSEE T ss_pred HHHHHCCCEE T ss_conf 8998639989 No 143 >>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, structure, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} (A:41-164) Probab=20.12 E-value=52 Score=13.21 Aligned_cols=53 Identities=9% Similarity=-0.056 Sum_probs=33.2 Q ss_pred CCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCH Q ss_conf 52145775297288722688640007899999997620169718998278997 Q gi|254780537|r 193 CLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSD 245 (294) Q Consensus 193 af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~ 245 (294) |..|.++.+|++...+................=+..++..+..+++++..... T Consensus 43 A~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~n~~~~~~~Ga~v~~~~~~~~~ 95 (124) T 1tzj_A 43 QVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDI 95 (124) T ss_dssp HHHHHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC---- T ss_pred HHHHHHHHHCCCEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCEECCCCCCH T ss_conf 99999997299479998277552126677412400565410352111578413 Done!