Query         gi|254780537|ref|YP_003064950.1| periplasmic solute binding protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 294
No_of_seqs    135 out of 2447
Neff          7.8 
Searched_HMMs 13730
Date          Wed Jun  1 09:55:17 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780537.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1xvla1 c.92.2.2 (A:49-327) Mn 100.0       0       0  477.1  27.4  274   19-294     2-275 (279)
  2 d1psza_ c.92.2.2 (A:) Pneumoco 100.0       0       0  474.9  26.5  275   18-293     4-284 (286)
  3 d1toaa_ c.92.2.2 (A:) Periplas 100.0       0       0  468.5  26.1  270   22-293     1-275 (277)
  4 d1pq4a_ c.92.2.2 (A:) Periplas 100.0       0       0  449.8  26.1  259   22-293     1-288 (289)
  5 d1m1na_ c.92.2.3 (A:) Nitrogen  90.0    0.59 4.3E-05   23.7  15.6  150  128-294   297-465 (477)
  6 d2iw1a1 c.87.1.8 (A:2-371) Lip  86.9    0.93 6.8E-05   22.4   6.2   16   35-50     21-36  (370)
  7 d2bfwa1 c.87.1.8 (A:218-413) G  75.4     2.4 0.00017   19.6   4.8   90   65-164   103-193 (196)
  8 d1tyeb2 c.62.1.1 (B:107-354) I  65.2     3.9 0.00028   18.2   4.2   60  222-289   186-245 (248)
  9 d1xmpa_ c.23.8.1 (A:) N5-CAIR   64.5       4 0.00029   18.1   6.1   28   73-102    57-84  (155)
 10 d2ihta1 c.31.1.3 (A:198-374) C  62.7     2.4 0.00018   19.6   2.6  120   20-150    18-159 (177)
 11 d2bisa1 c.87.1.8 (A:1-437) Gly  60.7     4.7 0.00034   17.6   5.6   19   34-52     23-41  (437)
 12 d1o4va_ c.23.8.1 (A:) N5-CAIR   60.4     4.7 0.00034   17.6   6.9   29   73-103    56-84  (169)
 13 d1iuka_ c.2.1.8 (A:) Hypotheti  60.3     3.7 0.00027   18.3   3.2   44  218-261    79-122 (136)
 14 d1m5wa_ c.1.24.1 (A:) Pyridoxi  59.2     4.9 0.00036   17.5   5.8   43  219-264   112-155 (242)
 15 d1r2ra_ c.1.1.1 (A:) Triosepho  56.3     5.5  0.0004   17.2   6.8   70  173-258   145-225 (246)
 16 d1o5xa_ c.1.1.1 (A:) Triosepho  56.3     5.5  0.0004   17.2   8.0   89  173-284   145-244 (246)
 17 d1y81a1 c.2.1.8 (A:6-121) Hypo  54.7     5.8 0.00042   17.0   5.3   44  218-261    65-108 (116)
 18 d1m6ja_ c.1.1.1 (A:) Triosepho  51.7     6.5 0.00047   16.7   5.8   59  184-258   166-235 (260)
 19 d1mioa_ c.92.2.3 (A:) Nitrogen  48.5     7.3 0.00053   16.3  15.6  148  128-293   286-506 (525)
 20 d1mo0a_ c.1.1.1 (A:) Triosepho  47.6     7.5 0.00055   16.2   6.3   70  173-258   154-234 (257)
 21 d2djia1 c.31.1.3 (A:187-363) P  46.8     7.7 0.00056   16.2   6.2  136   20-168    20-171 (177)
 22 d1neya_ c.1.1.1 (A:) Triosepho  45.9     7.9 0.00058   16.1   5.8   69  174-258   147-226 (247)
 23 d1qcza_ c.23.8.1 (A:) N5-CAIR   44.0     8.5 0.00062   15.9   6.4   55   45-103    31-85  (163)
 24 d1ytla1 c.31.1.6 (A:17-174) Ac  40.5     9.5  0.0007   15.5   4.9   37   67-103    87-125 (158)
 25 d2pjua1 c.92.3.1 (A:11-196) Pr  38.7      10 0.00074   15.3   6.6  149   27-260     6-164 (186)
 26 d2btma_ c.1.1.1 (A:) Triosepho  36.5      11  0.0008   15.1   7.3   59  184-258   159-228 (251)
 27 d1u11a_ c.23.8.1 (A:) N5-CAIR   35.1      12 0.00084   15.0   6.8   31   71-103    56-86  (159)
 28 d1ybha1 c.31.1.3 (A:281-459) A  34.6      12 0.00086   14.9   6.1   71   31-103    35-114 (179)
 29 d1hx0a2 c.1.8.1 (A:1-403) Anim  34.0      12 0.00087   14.9   3.0   31   33-63     21-65  (403)
 30 d1h6qa_ b.88.1.2 (A:) Translat  33.2      12  0.0009   14.8   4.0   38  130-167    85-122 (168)
 31 d1xg7a_ a.96.1.6 (A:) Hypothet  32.9     8.3  0.0006   15.9   1.5   95  157-269   120-216 (245)
 32 d1trea_ c.1.1.1 (A:) Triosepho  31.6      13 0.00095   14.6   6.1   59  184-258   160-228 (255)
 33 d1rd5a_ c.1.2.4 (A:) Trp synth  31.0      13 0.00098   14.5   7.4   74  219-293   185-260 (261)
 34 d2ez9a1 c.31.1.3 (A:183-365) P  30.7      14 0.00099   14.5   7.1   63   21-85     30-107 (183)
 35 d2ji7a1 c.31.1.3 (A:195-369) O  30.5      14   0.001   14.5   5.7   63   20-84     18-90  (175)
 36 d2d59a1 c.2.1.8 (A:4-142) Hypo  29.3      14   0.001   14.4   5.1   45  217-261    82-126 (139)
 37 d1qgna_ c.67.1.3 (A:) Cystathi  28.7      15  0.0011   14.3   7.3   84  145-230   246-334 (398)
 38 d1kv5a_ c.1.1.1 (A:) Triosepho  25.4      17  0.0012   13.9   6.8   59  184-258   159-228 (249)
 39 d2fdsa1 c.1.2.3 (A:1-324) Prot  25.0     2.8  0.0002   19.2  -2.1   12  185-196   161-172 (324)
 40 d1riqa1 a.203.1.1 (A:237-457)   24.8      17  0.0012   13.8   3.7   71  133-204    80-157 (221)
 41 d1txja_ b.88.1.2 (A:) Translat  24.7      17  0.0013   13.8   4.3   38  130-167    88-125 (171)
 42 d1gc0a_ c.67.1.3 (A:) Methioni  24.6      17  0.0013   13.8   8.0   39  138-176   231-270 (392)
 43 d1bhga3 c.1.8.3 (A:329-632) be  24.5      17  0.0013   13.8   4.6   18  225-242   197-214 (304)
 44 d2acva1 c.87.1.10 (A:3-463) Tr  23.0      18  0.0013   13.6   2.2   25  232-256   367-392 (461)
 45 d1o66a_ c.1.12.8 (A:) Ketopant  22.6      19  0.0014   13.5   8.0   43  218-261   157-199 (260)
 46 d1n2za_ c.92.2.2 (A:) Vitamin   21.5      20  0.0014   13.4   7.1   41  195-242   156-196 (245)
 47 d1ko7a1 c.98.2.1 (A:1-129) HPr  21.3      20  0.0015   13.4   3.8   46  216-261    63-109 (129)
 48 d2ctza1 c.67.1.3 (A:1-421) O-a  21.0      20  0.0015   13.3   8.4   51  145-195   270-320 (421)
 49 d1twda_ c.1.30.1 (A:) Copper h  20.5      21  0.0015   13.3   7.2   70  187-260   116-194 (247)
 50 d1j3ba1 c.91.1.1 (A:212-529) P  20.5      21  0.0015   13.3   3.7   22  221-242   195-216 (318)

No 1  
>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=100.00  E-value=0  Score=477.09  Aligned_cols=274  Identities=42%  Similarity=0.761  Sum_probs=253.5

Q ss_pred             CCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCC
Q ss_conf             33588289997528999999851891489996268898012022712457760378999988761068999997423557
Q gi|254780537|r   19 ATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGT   98 (294)
Q Consensus        19 ~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~   98 (294)
                      .+.+|++||||++||+++|++|+||+++|++|+|+|.|||+|+|+|+|+++|++|||||+||.+||+|+.+++.+... .
T Consensus         2 ~~~~k~~Vvas~~~l~~iv~~I~Gd~~~V~~l~p~~~dPH~y~~~p~d~~~l~~ADliv~~G~~lE~~l~~~~~~~~~-~   80 (279)
T d1xvla1           2 ETEEKKKVLTTFTVLADMVQNVAGDKLVVESITRIGAEIHGYEPTPSDIVKAQDADLILYNGMNLERWFEQFLGNVKD-V   80 (279)
T ss_dssp             CCCCCCEEEESSHHHHHHHHHHHTTTSEEEESSCSSCCCSSCCCCHHHHHHHHTCSEEEECCTTSSTTHHHHHHTSSS-C
T ss_pred             CCCCCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCCCHHHHHHHHHCCC-C
T ss_conf             988886799987699999999818844899806989796457689999999973999999799851889998764135-5


Q ss_pred             CCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             52111237420222100123346301112213567899999999986431888999999899863014553378998863
Q gi|254780537|r   99 KIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIE  178 (294)
Q Consensus        99 ~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~  178 (294)
                      .++.+.++..... ..++++|++.|||+||||.|++.++++|++.|+++||+|+++|++|+++|.++|++++.+++..++
T Consensus        81 ~~~~~~~~~~~~~-~~~~~~~~~~dpH~Wldp~~~~~~a~~Ia~~L~~~dP~~~~~y~~n~~~~~~~l~~l~~~~~~~l~  159 (279)
T d1xvla1          81 PSVVLTEGIEPIP-IADGPYTDKPNPHAWMSPRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLE  159 (279)
T ss_dssp             CEEETTTTCCCCB-CCSSSSTTSBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCEECCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             4211103545655-445555456774211176889999999999998758554467999899774005665799999996


Q ss_pred             CCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCC
Q ss_conf             07844736998266521457752972887226886400078999999976201697189982789979999999982993
Q gi|254780537|r  179 KVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNAS  258 (294)
Q Consensus       179 ~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~  258 (294)
                      ++|.+++.|+++|++|+||+++|||+++++...+++.+|||++|+++++.||+++|+|||+|++++++.++.|+++++++
T Consensus       160 ~~~~~~~~~v~~H~a~~Yf~~~~gl~~~~~~~~~~~~~ps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~~~~  239 (279)
T d1xvla1         160 QVPANQRFLVSCEGAFSYLARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGAR  239 (279)
T ss_dssp             TSCGGGCEEEEEESTTHHHHHHTTCEEEEEESSSSSCSCCHHHHHHHHHHHHTTTCSEEEEETTSCSHHHHHHHTTTCCE
T ss_pred             HCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHCCC
T ss_conf             18865528999545301356636962663025688566898899999999875486189824778829999999984997


Q ss_pred             EEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             444320123787778868999999999999986209
Q gi|254780537|r  259 YGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTLF  294 (294)
Q Consensus       259 ~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL~  294 (294)
                      ++..+++|+|+...+++++|++||+.|+++|.+||-
T Consensus       240 ~~~~~~~d~l~~~~~~~~tY~~~m~~n~~~i~~aL~  275 (279)
T d1xvla1         240 FGGNLYVDSLSTEEGPVPTFLDLLEYDARVITNGLL  275 (279)
T ss_dssp             EEEEECSSCCCCSSSSCCSHHHHHHHHHHHHHTTSS
T ss_pred             CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             045222036888898866799999999999999964


No 2  
>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA {Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
Probab=100.00  E-value=0  Score=474.91  Aligned_cols=275  Identities=34%  Similarity=0.613  Sum_probs=252.4

Q ss_pred             CCCCCCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCC-
Q ss_conf             4335882899975289999998518914899962688980120227124577603789999887610689999974235-
Q gi|254780537|r   18 SATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKK-   96 (294)
Q Consensus        18 ~~~~~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~-   96 (294)
                      +.+.+|++||||++||+++|++|+||+++|++|+|+|.|||+|||+|+|+++|++||||||||.+||+|+.+++.+... 
T Consensus         4 ~~~~~kl~VVat~~~l~~iv~~I~Gd~v~V~~L~p~g~dPH~yep~p~d~~~l~~ADliv~~G~~~E~~~~~~~~~~~~~   83 (286)
T d1psza_           4 TTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIFYNGINLETGGNAWFTKLVEN   83 (286)
T ss_dssp             GGGSCCEEEEEEEHHHHHHHHHHHGGGEEEEEEECTTSCSSSCCCCHHHHHHHHHCSEEEECCTTSTTHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEECHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             77899957999771999999998098259998069897985675899999999709999987988632577889988654


Q ss_pred             -----CCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf             -----575211123742022210012334630111221356789999999998643188899999989986301455337
Q gi|254780537|r   97 -----GTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSIL  171 (294)
Q Consensus        97 -----~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~  171 (294)
                           ....+...++++.... ++++++++.|||+|+||.|++.++++|+++|+++||+++++|++|+++|.++|++|+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dPH~Wldp~~~~~~a~~i~~~L~~~dP~~~~~y~~n~~~~~~~l~~l~~  162 (286)
T d1psza_          84 AKKTENKDYFAVSDGVDVIYL-EGQNEKGKEDPHAWLNLENGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDK  162 (286)
T ss_dssp             TTCCBTTTEEETTTTSCCCBS-TTCCSTTCBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCEEEEECCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             302565148983166311334-5666555566443568888999999999999885801268999999998767888889


Q ss_pred             HHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH
Q ss_conf             89988630784473699826652145775297288722688640007899999997620169718998278997999999
Q gi|254780537|r  172 PLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV  251 (294)
Q Consensus       172 ~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~i  251 (294)
                      +++.+++++|..+|.++++|++|+||+++|||++.++.+.+++.+||+++++++++.||+++|+|||+|++++++.++.|
T Consensus       163 ~~~~~~~~~~~~~~~~i~~H~a~~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~l  242 (286)
T d1psza_         163 ESKDKFNKIPAEKKLIVTSEGAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTV  242 (286)
T ss_dssp             HHTTTTTTSCTTTCCEEEEECCCHHHHHHHTCCEEEEESSTTSCSSCHHHHHHHHHHHHTSCCCCEEEETTSCSHHHHHH
T ss_pred             HHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCCCCCCEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
T ss_conf             99998765214535999744403667774487420102105633457168999999988378259999088892999999


Q ss_pred             HHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             998299344432012378777886899999999999998620
Q gi|254780537|r  252 AYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       252 a~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      |+++|++++.++++|++++.+..+++|++||++|+++|++||
T Consensus       243 a~~~gv~v~~~~~~d~l~~~~~~~~~Y~~~m~~n~~~l~~aL  284 (286)
T d1psza_         243 SQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGL  284 (286)
T ss_dssp             HHHHTCCEEEEECSSSCCCTTSTTCSHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             997399678641565667789875779999999999999986


No 3  
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA {Treponema pallidum [TaxId: 160]}
Probab=100.00  E-value=0  Score=468.47  Aligned_cols=270  Identities=24%  Similarity=0.402  Sum_probs=250.0

Q ss_pred             CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             88289997528999999851891489996268898012022712457760378999988761068999997423557521
Q gi|254780537|r   22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKII  101 (294)
Q Consensus        22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i  101 (294)
                      +||+||||++||+++|++|+||+++|++|+|+|+|||+|||+|+|+++|++||+||+||.+||+|+.+++.+...+..++
T Consensus         1 gkp~Vv~t~~pl~~~v~~I~gd~v~V~~lip~~~dPH~ye~~p~d~~~l~~ADliv~~G~~lE~~~~~~~~~~~~~~~v~   80 (277)
T d1toaa_           1 GKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGNADLILYNGLHLETKMGEVFSKLRGSRLVV   80 (277)
T ss_dssp             CCCEEEESSHHHHHHHHHHHGGGSEEEESCCTTCCTTTCCCCHHHHHHHHHCSEEEECCTTCSTTCHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCCCCEEE
T ss_conf             99899998879999999982994589980697979827768999999995699999989986613589998647887155


Q ss_pred             CCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
Q ss_conf             11237420222100123346301112213567899999999986431888999999899863014553378998863078
Q gi|254780537|r  102 TVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVD  181 (294)
Q Consensus       102 ~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p  181 (294)
                      ...+.....  ..++++|++.|||+|+||.|++.++++|++.|+++||+|++.|++|+++|.++|++|+.+++..++.+|
T Consensus        81 ~~~~~~~~~--~~~~~~~~~~dPH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~n~~~~~~~L~~l~~~~~~~~~~~~  158 (277)
T d1toaa_          81 AVSETIPVS--QRLSLEEAEFDPHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLP  158 (277)
T ss_dssp             EGGGGSCGG--GSCBSTTSCBCCCGGGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             ECCCCCCCC--CCCCCCCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             204444421--013545333564144074158999999999999874666789999999999999998789999987501


Q ss_pred             CCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEE-
Q ss_conf             4473699826652145775297288722688640007899999997620169718998278997999999998299344-
Q gi|254780537|r  182 PEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYG-  260 (294)
Q Consensus       182 ~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~-  260 (294)
                      ..+|.++++|++|+||+++|||++.++.+.+++.+||+++++++++.||+++|+|||+|++++++.++.|+++++++.. 
T Consensus       159 ~~~~~~v~~H~a~~Yf~~~~gl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~~~k~~~  238 (277)
T d1toaa_         159 AERRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQARGHV  238 (277)
T ss_dssp             GGGCEEEEEESCCHHHHHHHTCEEEEEECSSCSSCCCHHHHHHHHHHHHHTTCSEEEEETTSCTHHHHHHHHHHHTTTCC
T ss_pred             CCCEEEEEECCCHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCEE
T ss_conf             46438999455125578734864011123344213414799999999985177089954778818999999985788413


Q ss_pred             ----EEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             ----432012378777886899999999999998620
Q gi|254780537|r  261 ----GVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       261 ----~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                          +.++.|++++.+..+.+|++||++|+++|++||
T Consensus       239 ~~~~~~l~~d~l~~~~~~~~tY~~~m~~N~~~i~~aL  275 (277)
T d1toaa_         239 VQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVAAL  275 (277)
T ss_dssp             CEEEEEECSSSCCCTTSGGGSHHHHHHHHHHHHHHHH
T ss_pred             ECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             3447723544456778883659999999999999986


No 4  
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=100.00  E-value=0  Score=449.82  Aligned_cols=259  Identities=22%  Similarity=0.353  Sum_probs=233.6

Q ss_pred             CCCEEEEECHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             88289997528999999851891489996268898012022712457760378999988761068999997423557521
Q gi|254780537|r   22 QKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKII  101 (294)
Q Consensus        22 ~~~~Vv~s~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i  101 (294)
                      ++++||||++||+++|++|+||+++|++|+|+|.|||+|+|+|+|+++|++||+|||||.+||+||.+.+.+..++.+++
T Consensus         1 d~l~Vv~si~pl~~lv~~i~gd~~~V~~L~p~g~dPH~y~~~psd~~~l~~ADliv~~G~~lE~~~~~~~~~~~~~~~~v   80 (289)
T d1pq4a_           1 DAMDITVSIPPQQYFLEKIGGDLVRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGFEQPWLEKLKAANANMKLI   80 (289)
T ss_dssp             CCEEEEESSHHHHHHHHHHHGGGEEEEESSCTTSCGGGCCCCHHHHHHGGGCSEEEECCTTTTTTTHHHHHHHCSSSEEE
T ss_pred             CCCEEEEECHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCCCC
T ss_conf             99889997689999999983893479980698979835768999999996599999969632678999998745698741


Q ss_pred             CCCCCCCHHHHH-----------------------------HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             112374202221-----------------------------001233463011122135678999999999864318889
Q gi|254780537|r  102 TVTDGINPIGVS-----------------------------EDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNA  152 (294)
Q Consensus       102 ~~~~~i~~~~~~-----------------------------~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~  152 (294)
                      ..++++..+...                             ++++++++.|||+||||.|++.++++|++.|+++||+++
T Consensus        81 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DPH~Wldp~n~~~~a~~I~~~L~~~dP~~~  160 (289)
T d1pq4a_          81 DSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAKGALMVADPHIWLSPTLVKRQATTIAKELAELDPDNR  160 (289)
T ss_dssp             ETTTTCCCCBSCC----------------------------------CCBCCCGGGCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             02366443110135665532466665544564455421211000133455512200430178999999999987504203


Q ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             99999899863014553378998863078447369982665214577529728872268864000789999999762016
Q gi|254780537|r  153 KKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH  232 (294)
Q Consensus       153 ~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~  232 (294)
                      +.|++|+++|.++|.+|+.+++++++.++  ++.++++|++|+||+++|||++.++.  .++.+||+++++++++.||++
T Consensus       161 ~~y~~N~~~~~~~L~~l~~~~~~~l~~~~--~~~~v~~H~a~~Yf~~~ygl~~~~~~--~~~~eps~~~l~~l~~~ik~~  236 (289)
T d1pq4a_         161 DQYEANLAAFLAELERLNQELGQILQPLP--QRKFIVFHPSWAYFARDYNLVQIPIE--VEGQEPSAQELKQLIDTAKEN  236 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCS--CCEEEESSCCCHHHHHHTTCEEEESC--BTTBCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHCCCC--CCCEEEECCCHHHHHHHCCCEEEEEE--CCCCCCCHHHHHHHHHHHHHC
T ss_conf             45655189887658999899998725324--78323325328779885485044421--368899989999999999974


Q ss_pred             CCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             9718998278997999999998299344432012378777886899999999999998620
Q gi|254780537|r  233 KIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       233 ~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      +|+|||+|++++++.++.|++++|+++..   +|+|+      .+|+++|+.|+++|.+||
T Consensus       237 ~i~~if~e~q~~~~~~~~la~~~gv~v~~---ldpl~------~~y~~~m~~n~~~i~~A~  288 (289)
T d1pq4a_         237 NLTMVFGETQFSTKSSEAIAAEIGAGVEL---LDPLA------ADWSSNLKAVAQKIANAN  288 (289)
T ss_dssp             TCCEEEEETTSCCHHHHHHHHHHTCEEEE---ECTTC------SSHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHHCCCCEEE---ECCCC------CCHHHHHHHHHHHHHHHC
T ss_conf             99899973898939999999980998798---78873------259999999999999864


No 5  
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Azotobacter vinelandii [TaxId: 354]}
Probab=89.98  E-value=0.59  Score=23.68  Aligned_cols=150  Identities=13%  Similarity=0.087  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC----HHHHHHCCC
Q ss_conf             2135678999999999864318889999998998630145533789988630784473699826652----145775297
Q gi|254780537|r  128 MSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL----VYLAEDFGF  203 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af----~Y~~~~yGl  203 (294)
                      ..+.+.......|++.|..-.|+..+.+-   +...+++.+...+++..+.    .+|.++...+..    .-|.+++|+
T Consensus       297 ~G~~~T~~~Lr~ia~~~g~~i~~~~e~~i---~~e~~~~~~~l~~~r~~l~----Gkrv~i~~~~~~~~~l~~~l~elGm  369 (477)
T d1m1na_         297 FGPTKTIESLRAIAAKFDESIQKKCEEVI---AKYKPEWEAVVAKYRPRLE----GKRVMLYIGGLRPRHVIGAYEDLGM  369 (477)
T ss_dssp             SSHHHHHHHHHHHHTTSCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHT----TCEEEECBSSSHHHHTHHHHHTTTC
T ss_pred             CCHHHHHHHHHHHHHHHCCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHC----CCCEEEECCCHHHHHHHHHHHHCCC
T ss_conf             75057999999999984897305689999---9899999999999987624----8827996684348999999998799


Q ss_pred             EEEEECC-CCCCC--CCC------------HHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             2887226-88640--007------------89999999762016971899827899799999999829934443201237
Q gi|254780537|r  204 KSLYLWP-INSDS--ERS------------PSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSL  268 (294)
Q Consensus       204 ~~~~~~~-~~~~~--eps------------~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l  268 (294)
                      +++.+.. ..+..  +..            -.+..++.+.|++.++..++..     ..-+.+++..|++...+..-|-.
T Consensus       370 evv~~~~~~~~~~d~~~~~~~~~~~~~i~~d~~~~el~~~i~~~~pDL~ig~-----~~~k~~a~k~gIP~~~~~~~dr~  444 (477)
T d1m1na_         370 EVVGTGYEFAHNDDYDRTMKEMGDSTLLYDDVTGYEFEEFVKRIKPDLIGSG-----IKEKFIFQKMGIPFREMHSWDYS  444 (477)
T ss_dssp             EEEEEEESSCCHHHHHTTTTTSCTTCEEEESCBHHHHHHHHHHHCCSEEEEC-----HHHHHHHHHTTCCEEESSSGGGC
T ss_pred             EEEEEEECCCCHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCEEEEC-----CHHHHHHHHCCCCCCCCCCCCCC
T ss_conf             7889861577767899999866988689568999999999986599999978-----50589999819996217753458


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf             87778868999999999999986209
Q gi|254780537|r  269 SKPDGPAPTYLDLLRFSLTKIVDTLF  294 (294)
Q Consensus       269 ~~~~~~~~~Y~~~m~~N~~~l~~aL~  294 (294)
                      +    +--.|-+++ +-.+.|.++|+
T Consensus       445 g----p~~GY~G~~-~la~~i~~al~  465 (477)
T d1m1na_         445 G----PYHGFDGFA-IFARDMDMTLN  465 (477)
T ss_dssp             C----CCSHHHHHH-HHHHHHHHHHT
T ss_pred             C----CCCCHHHHH-HHHHHHHHHHH
T ss_conf             8----877188899-99999999984


No 6  
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]}
Probab=86.89  E-value=0.93  Score=22.36  Aligned_cols=16  Identities=19%  Similarity=0.133  Sum_probs=6.1

Q ss_pred             HHHHHHCCCEEEEEEE
Q ss_conf             9999851891489996
Q gi|254780537|r   35 DITQNIAKDLVTVTTL   50 (294)
Q Consensus        35 ~iv~~I~gd~v~V~~l   50 (294)
                      .+++.+.....+|+.+
T Consensus        21 ~la~~L~~~G~~V~v~   36 (370)
T d2iw1a1          21 RIASTVAARGHHVRVY   36 (370)
T ss_dssp             HHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHCCCEEEEE
T ss_conf             9999999779979999


No 7  
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=75.36  E-value=2.4  Score=19.63  Aligned_cols=90  Identities=16%  Similarity=0.127  Sum_probs=47.3

Q ss_pred             HHHH-HHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             2457-760378999988761068999997423557521112374202221001233463011122135678999999999
Q gi|254780537|r   65 ADAI-KIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKA  143 (294)
Q Consensus        65 ~d~~-~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~  143 (294)
                      .++. -++.||+++... -.|++-..+++....+..+|....+  ...   +.- .+  +-.+|.+|.+...+++.|.+.
T Consensus       103 ~~l~~~~~~~di~v~ps-~~e~~~~~~~Eam~~G~pvI~~~~~--~~~---e~i-~~--~~g~~~~~~~~~~l~~~i~~~  173 (196)
T d2bfwa1         103 EFVRELYGSVDFVIIPS-YFEPFGLVALEAMCLGAIPIASAVG--GLR---DII-TN--ETGILVKAGDPGELANAILKA  173 (196)
T ss_dssp             HHHHHHHTTCSEEEECC-SCCSSCHHHHHHHHTTCEEEEESCH--HHH---HHC-CT--TTCEEECTTCHHHHHHHHHHH
T ss_pred             CCCHHCCCCCCCCCCCC-CCCCCCCCCHHHHHCCCEEEECCCC--CCC---EEE-CC--CCEEEECCCCHHHHHHHHHHH
T ss_conf             11000012323344322-2112332201333148604651788--532---010-28--731467899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHC
Q ss_conf             864318889999998998630
Q gi|254780537|r  144 LTALDPSNAKKYELNAREYSE  164 (294)
Q Consensus       144 L~~~dP~~~~~y~~N~~~~~~  164 (294)
                      | ..+++....+.+|++++..
T Consensus       174 l-~~~~~~~~~~~~~a~~~a~  193 (196)
T d2bfwa1         174 L-ELSRSDLSKFRENCKKRAM  193 (196)
T ss_dssp             H-HCCHHHHHHHHHHHHHHHH
T ss_pred             H-HCCHHHHHHHHHHHHHHHH
T ss_conf             9-5799999999999999998


No 8  
>d1tyeb2 c.62.1.1 (B:107-354) Integrin beta A domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.23  E-value=3.9  Score=18.18  Aligned_cols=60  Identities=20%  Similarity=0.243  Sum_probs=39.3

Q ss_pred             HHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             99999762016971899827899799999999829934443201237877788689999999999999
Q gi|254780537|r  222 MRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKI  289 (294)
Q Consensus       222 l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l  289 (294)
                      +.++.+.+++++|..||+-+...-...+.|++.++...+..+..|        ..+-+++++...+.|
T Consensus       186 ~~ql~~~l~~~~i~~ifavt~~~~~~Y~~l~~~~~g~~~~~l~~d--------ssNi~~lI~~~y~~i  245 (248)
T d1tyeb2         186 LGLMTEKLSQKNINLIFAVTENVVNLYQNYSELIPGTTVGVLSMD--------SSNVLQLIVDAYGKI  245 (248)
T ss_dssp             HHHHHHHHHHTTEEEEEEECGGGHHHHHHHHHTSTTCEEEECSSC--------CHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCEEEEECCC--------CHHHHHHHHHHHHHH
T ss_conf             899999999829579999883156899999985698579870553--------444999999999987


No 9  
>d1xmpa_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Bacillus anthracis [TaxId: 1392]}
Probab=64.52  E-value=4  Score=18.09  Aligned_cols=28  Identities=11%  Similarity=0.075  Sum_probs=12.3

Q ss_pred             CCEEEEECCCCCHHHHHHHHHCCCCCCCCC
Q ss_conf             789999887610689999974235575211
Q gi|254780537|r   73 ADLILCNGLHLEETYMKYFTNLKKGTKIIT  102 (294)
Q Consensus        73 Adliv~~G~~~E~~~~~~~~~~~~~~~~i~  102 (294)
                      .++|+ -+.|++..+.-.+... -..++|.
T Consensus        57 ~~viI-a~AG~aa~Lpgvva~~-t~~PVIg   84 (155)
T d1xmpa_          57 LKVII-AGAGGAAHLPGMVAAK-TNLPVIG   84 (155)
T ss_dssp             CCEEE-EEEESSCCHHHHHHTT-CCSCEEE
T ss_pred             CEEEE-EECCCCCCCHHHHHHH-CCCEEEE
T ss_conf             14887-5414677762578873-6600788


No 10 
>d2ihta1 c.31.1.3 (A:198-374) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]}
Probab=62.72  E-value=2.4  Score=19.57  Aligned_cols=120  Identities=13%  Similarity=0.198  Sum_probs=59.0

Q ss_pred             CCCCCEEEEECHH--------HHHHHHHHCCCEEEEEEEECCCC----CCCCCC----------CCHHHHHHHCCCCEEE
Q ss_conf             3588289997528--------99999985189148999626889----801202----------2712457760378999
Q gi|254780537|r   20 TTQKKVVLSSFSI--------IGDITQNIAKDLVTVTTLVEAGN----DSHSYQ----------VTSADAIKIQNADLIL   77 (294)
Q Consensus        20 ~~~~~~Vv~s~~p--------l~~iv~~I~gd~v~V~~li~~g~----dpH~ye----------~tp~d~~~i~~Adliv   77 (294)
                      .+++|.|++--..        +-.+++..+-.-  +++.+..|.    +|+.+=          -++.-...+++||+++
T Consensus        18 ~AkrPvii~G~g~~~~~a~~~l~~lae~~~iPv--~~t~~~kg~~p~~hp~~~G~~~~~~~G~~~~~~~~~~l~~aDlvl   95 (177)
T d2ihta1          18 EAKHPVLVVGAAAIRSGAVPAIRALAERLNIPV--ITTYIAKGVLPVGHELNYGAVTGYMDGILNFPALQTMFAPVDLVL   95 (177)
T ss_dssp             HCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCE--EECSTTTTSSCTTCTTEEEECCTTHHHHHTSCHHHHHHTTCCEEE
T ss_pred             HCCCEEEEECCCCCHHHHHHHHHHHHHCCEEEE--EECCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHCCCCCEE
T ss_conf             079979999968253426999999753155899--960544658998653342300002232212389998760677457


Q ss_pred             EECCCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9887610689999974235575211123742022210012334630111221356789999999998643188
Q gi|254780537|r   78 CNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPS  150 (294)
Q Consensus        78 ~~G~~~E~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~  150 (294)
                      ..|..+..+..........+.++|.+...  +....    .....|--++-|+   ....+.+.+.+.+..+.
T Consensus        96 ~vG~~~~~~~~~~~~~~~~~~k~I~Id~d--~~~i~----~~~~~~~~i~gD~---~~~l~~L~~~l~~~~~~  159 (177)
T d2ihta1          96 TVGYDYAEDLRPSMWQKGIEKKTVRISPT--VNPIP----RVYRPDVDVVTDV---LAFVEHFETATASFGAK  159 (177)
T ss_dssp             EETCCGGGCCCHHHHCCSSCCEEEEEESS--CCSCT----TTCCCSEEEESCH---HHHHHHHHHHTTTCCCC
T ss_pred             EECCCCCCCCCCCCCCCCCCCCEEEECCC--HHHHC----CCCCCCEEEEECH---HHHHHHHHHHHHHCCCC
T ss_conf             86245455432354445776530487078--78928----8557874798589---99999999976636655


No 11 
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]}
Probab=60.68  E-value=4.7  Score=17.64  Aligned_cols=19  Identities=16%  Similarity=0.071  Sum_probs=9.8

Q ss_pred             HHHHHHHCCCEEEEEEEEC
Q ss_conf             9999985189148999626
Q gi|254780537|r   34 GDITQNIAKDLVTVTTLVE   52 (294)
Q Consensus        34 ~~iv~~I~gd~v~V~~li~   52 (294)
                      +.+++.++.-..+|+.+.|
T Consensus        23 ~~La~~L~~~Gh~V~Vvtp   41 (437)
T d2bisa1          23 TAISEALASLGHEVLVFTP   41 (437)
T ss_dssp             HHHHHHHHHTTCEEEEEEE
T ss_pred             HHHHHHHHHCCCEEEEEEC
T ss_conf             9999999976998999905


No 12 
>d1o4va_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Thermotoga maritima [TaxId: 2336]}
Probab=60.44  E-value=4.7  Score=17.61  Aligned_cols=29  Identities=14%  Similarity=0.190  Sum_probs=15.3

Q ss_pred             CCEEEEECCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             7899998876106899999742355752111
Q gi|254780537|r   73 ADLILCNGLHLEETYMKYFTNLKKGTKIITV  103 (294)
Q Consensus        73 Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~  103 (294)
                      .++|| -|.|++..+.-.+.... ..++|.+
T Consensus        56 ~~viI-a~AG~aa~LpgvvA~~t-~~PVIgv   84 (169)
T d1o4va_          56 IEVII-AGAGGAAHLPGMVASIT-HLPVIGV   84 (169)
T ss_dssp             CCEEE-EEEESSCCHHHHHHHHC-SSCEEEE
T ss_pred             CEEEE-EEECCCCCCHHHHHHHC-CEEEEEC
T ss_conf             82899-96057767567888835-6148854


No 13 
>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}
Probab=60.30  E-value=3.7  Score=18.33  Aligned_cols=44  Identities=9%  Similarity=0.116  Sum_probs=36.9

Q ss_pred             CHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf             78999999976201697189982789979999999982993444
Q gi|254780537|r  218 SPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGG  261 (294)
Q Consensus       218 s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~  261 (294)
                      .++.+.++.+.+.+.++++++.++...++.+..+|++.|++++.
T Consensus        79 p~~~v~~~v~~~~~~g~k~i~~q~G~~~~e~~~~a~~~Gi~vV~  122 (136)
T d1iuka_          79 PPSALMDHLPEVLALRPGLVWLQSGIRHPEFEKALKEAGIPVVA  122 (136)
T ss_dssp             CHHHHTTTHHHHHHHCCSCEEECTTCCCHHHHHHHHHTTCCEEE
T ss_pred             CHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEC
T ss_conf             47889999999985178859985585589999999995997993


No 14 
>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}
Probab=59.23  E-value=4.9  Score=17.47  Aligned_cols=43  Identities=21%  Similarity=0.330  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHCCCCCEE-EEEECCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf             899999997620169718-9982789979999999982993444320
Q gi|254780537|r  219 PSMMRHAINQMRSHKIKF-IFSESTNSDQPAKQVAYETNASYGGVLY  264 (294)
Q Consensus       219 ~~~l~~~~~~ik~~~v~~-if~e~~~~~~~~~~ia~e~~~~~~~~~~  264 (294)
                      ...|+.+++.+++.++++ +|.+|  +.+.++. |+++|+..+++.+
T Consensus       112 ~~~L~~~i~~l~~~girvSLFiDp--d~~~i~~-a~~lGad~IElhT  155 (242)
T d1m5wa_         112 RDKMRDACKRLADAGIQVSLFIDA--DEEQIKA-AAEVGAPFIEIHT  155 (242)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECS--CHHHHHH-HHHTTCSEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEEEECC--CHHHHHH-HHHCCCCEEEEEC
T ss_conf             889999999998669707999445--2465778-8642766355320


No 15 
>d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=56.32  E-value=5.5  Score=17.15  Aligned_cols=70  Identities=13%  Similarity=0.219  Sum_probs=47.4

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-----------CCCEEEEEEC
Q ss_conf             99886307844736998266521457752972887226886400078999999976201-----------6971899827
Q gi|254780537|r  173 LKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS-----------HKIKFIFSES  241 (294)
Q Consensus       173 ~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~-----------~~v~~if~e~  241 (294)
                      ++..+..++..++.+++|.|.|.               +.++..|+|.++.++...|++           .+++ |++..
T Consensus       145 l~~~l~~~~~~~~iiiAYEPvWA---------------IGTG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~-ilYGG  208 (246)
T d1r2ra_         145 TKVIADNVKDWSKVVLAYEPVWA---------------IGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTR-IIYGG  208 (246)
T ss_dssp             HHHHHHTCSCGGGEEEEECCGGG---------------SSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCC-EEECS
T ss_pred             HHHHHHCCCCCCEEEEECCCEEE---------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCC-EEECC
T ss_conf             98876233434428996375653---------------268877660556666788777888765676538665-88608


Q ss_pred             CCCHHHHHHHHHHHCCC
Q ss_conf             89979999999982993
Q gi|254780537|r  242 TNSDQPAKQVAYETNAS  258 (294)
Q Consensus       242 ~~~~~~~~~ia~e~~~~  258 (294)
                      ..+++-++.|.+.-++.
T Consensus       209 SV~~~N~~~i~~~~~vD  225 (246)
T d1r2ra_         209 SVTGATCKELASQPDVD  225 (246)
T ss_dssp             CCCTTTHHHHHTSTTCC
T ss_pred             CCCHHHHHHHHCCCCCC
T ss_conf             97987999995688989


No 16 
>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]}
Probab=56.29  E-value=5.5  Score=17.15  Aligned_cols=89  Identities=11%  Similarity=0.207  Sum_probs=55.5

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-----------CCCEEEEEEC
Q ss_conf             99886307844736998266521457752972887226886400078999999976201-----------6971899827
Q gi|254780537|r  173 LKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS-----------HKIKFIFSES  241 (294)
Q Consensus       173 ~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~-----------~~v~~if~e~  241 (294)
                      ++..+..+...++.+++|.|.|.               +.++..|++.++.++...|++           .++++ ++..
T Consensus       145 l~~~l~~~~~~~~iiIAYEPvWA---------------IGTG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~i-lYGG  208 (246)
T d1o5xa_         145 VKAFVDLIDNFDNVILVYEPLWA---------------IGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRI-LYGG  208 (246)
T ss_dssp             HHTTGGGCCCTTSEEEEECCGGG---------------SSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEE-EECS
T ss_pred             HHHHHHHHCCCCCEEEEECCCCC---------------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEC
T ss_conf             88654310355547999665001---------------2589876640110014677778877766754486428-9828


Q ss_pred             CCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHH
Q ss_conf             8997999999998299344432012378777886899999999
Q gi|254780537|r  242 TNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRF  284 (294)
Q Consensus       242 ~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~  284 (294)
                      ..++.-++.|.+.-++.-. +.-.-+|     + +++.++++.
T Consensus       209 SV~~~N~~~i~~~~~idG~-LVG~ASL-----~-~~F~~Ii~~  244 (246)
T d1o5xa_         209 SVNTENCSSLIQQEDIDGF-LVGNASL-----K-ESFVDIIKS  244 (246)
T ss_dssp             CCCTTTHHHHHTSTTCCEE-EECGGGG-----S-TTHHHHHHH
T ss_pred             CCCHHHHHHHHCCCCCCEE-EEECCCC-----C-HHHHHHHHH
T ss_conf             9897599999568898979-9623208-----8-899999998


No 17 
>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}
Probab=54.69  E-value=5.8  Score=16.98  Aligned_cols=44  Identities=7%  Similarity=0.114  Sum_probs=36.4

Q ss_pred             CHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf             78999999976201697189982789979999999982993444
Q gi|254780537|r  218 SPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGG  261 (294)
Q Consensus       218 s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~  261 (294)
                      .++.+.++.+.+.+.+++.++.++...+..+..++++.|+++++
T Consensus        65 p~~~~~~~l~~~~~~g~k~v~~~~g~~~~~~~~~a~~~gi~vig  108 (116)
T d1y81a1          65 PPKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEYSF  108 (116)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCEEEC
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHCCCEEEC
T ss_conf             78999999999986699658850652119999999985998993


No 18 
>d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]}
Probab=51.68  E-value=6.5  Score=16.67  Aligned_cols=59  Identities=12%  Similarity=0.185  Sum_probs=44.3

Q ss_pred             CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-----------CCCEEEEEECCCCHHHHHHHH
Q ss_conf             736998266521457752972887226886400078999999976201-----------697189982789979999999
Q gi|254780537|r  184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS-----------HKIKFIFSESTNSDQPAKQVA  252 (294)
Q Consensus       184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~-----------~~v~~if~e~~~~~~~~~~ia  252 (294)
                      ++.+++|.|.|.               +.++..|+|.++.++...|++           .+++ |++-...++.-+..+.
T Consensus       166 ~~iiIAYEPvWA---------------IGTG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~v~-ilYGGSV~~~N~~~i~  229 (260)
T d1m6ja_         166 KNIILAYEPVWA---------------IGTGKTATPDQAQEVHQYIRKWMTENISKEVAEATR-IQYGGSVNPANCNELA  229 (260)
T ss_dssp             GGEEEEECCGGG---------------SSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSC-EEECSCCCTTTHHHHH
T ss_pred             HCCEEECCCEEC---------------CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCC-EEECCCCCHHHHHHHH
T ss_conf             150775163311---------------468865681777777788888988640532347774-8971898875999984


Q ss_pred             HHHCCC
Q ss_conf             982993
Q gi|254780537|r  253 YETNAS  258 (294)
Q Consensus       253 ~e~~~~  258 (294)
                      +.-++.
T Consensus       230 ~~~~vD  235 (260)
T d1m6ja_         230 KKADID  235 (260)
T ss_dssp             TSTTCC
T ss_pred             CCCCCC
T ss_conf             778998


No 19 
>d1mioa_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha chain {Clostridium pasteurianum [TaxId: 1501]}
Probab=48.51  E-value=7.3  Score=16.34  Aligned_cols=148  Identities=11%  Similarity=0.100  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCC----HHHHHHC
Q ss_conf             2135678999999999864318-889-999998998630145533789988630784473699826652----1457752
Q gi|254780537|r  128 MSLTNAMIYIENIRKALTALDP-SNA-KKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCL----VYLAEDF  201 (294)
Q Consensus       128 ldp~~~~~~a~~I~~~L~~~dP-~~~-~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af----~Y~~~~y  201 (294)
                      +.+.........|++.+..-++ +.. +.+.+...    ++.+....++..+.    .+|.++..-+..    .-|.+++
T Consensus       286 ~G~~~T~~~Lr~ia~~~g~~~~~~~~ee~I~~e~~----~~~~~l~~~~~~L~----GKrv~i~~g~~~~~~~~~~l~el  357 (525)
T d1mioa_         286 IGVDGIVETLRDMAKCFDDPELTKRTEEVIAEEIA----AIQDDLDYFKEKLQ----GKTACLYVGGSRSHTYMNMLKSF  357 (525)
T ss_dssp             SSHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHT----TCEEEEEESSSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHC----CCCEEEECCCHHHHHHHHHHHHC
T ss_conf             66033799999999983995056789999999999----99999999997607----98658836853789999999986


Q ss_pred             CCEEEEECC-CCCCCC----------------------------------C-----------------------------
Q ss_conf             972887226-886400----------------------------------0-----------------------------
Q gi|254780537|r  202 GFKSLYLWP-INSDSE----------------------------------R-----------------------------  217 (294)
Q Consensus       202 Gl~~~~~~~-~~~~~e----------------------------------p-----------------------------  217 (294)
                      |++++..-. ..+..+                                  .                             
T Consensus       358 Gmevv~~g~~~~h~dd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (525)
T d1mioa_         358 GVDSLVAGFEFAHRDDYEGREVIPTIKIDADSKNIPEITVTPDEQKYRVVIPEDKVEELKKAGVPLSSYGGMMKEMHDGT  437 (525)
T ss_dssp             TCEEEEEEESSCCHHHHHCGGGTTTCCCCSSCCCCCCCCCCCCSSSCCCSSCTHHHHHHHGGGCCBTCCCCGGGTSCTTE
T ss_pred             CCEEEEEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCCC
T ss_conf             99699854531443124443202321111012343100135431001334316677766430000111223343237776


Q ss_pred             ---CHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             ---7899999997620169718998278997999999998299344432012378777886899999999999998620
Q gi|254780537|r  218 ---SPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       218 ---s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                         .-.+..++.+.|++.++..+|..     ..-+.+|+..|++...+..-|-.+    +--.|-+++ +-.+.|..+|
T Consensus       438 ~iidd~~~~el~~~i~~~~pDLiig~-----~~ek~~a~klgiP~~~~~~~dr~g----py~GY~G~~-~fa~~i~~~l  506 (525)
T d1mioa_         438 ILIDDMNHHDMEVVLEKLKPDMFFAG-----IKEKFVIQKGGVLSKQLHSYDYNG----PYAGFRGVV-NFGHELVNGI  506 (525)
T ss_dssp             EEEESCBHHHHHHHHHHHCCSEEEEC-----HHHHHHHHHTTCEEEETTTTTSCC----CCSSSHHHH-HHHHHHHHHH
T ss_pred             EEECCCCHHHHHHHHHHCCCCEEEEC-----CCHHHHHHHCCCCEEECCCCCCCC----CCCCHHHHH-HHHHHHHHHH
T ss_conf             78517998999999976499999967-----730698998299874178344688----864678899-9999999987


No 20 
>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]}
Probab=47.57  E-value=7.5  Score=16.25  Aligned_cols=70  Identities=11%  Similarity=0.137  Sum_probs=47.1

Q ss_pred             HHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----------CCEEEEEEC
Q ss_conf             998863078447369982665214577529728872268864000789999999762016-----------971899827
Q gi|254780537|r  173 LKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-----------KIKFIFSES  241 (294)
Q Consensus       173 ~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-----------~v~~if~e~  241 (294)
                      +...+......++.+|+|.|.|.               +..+..|++.++.++...||+.           +++++ +..
T Consensus       154 l~~~~~~~~~~~~iiIAYEPvWA---------------IGtG~~a~~~~i~e~~~~Ir~~l~~~~~~~~~~~~~iL-YGG  217 (257)
T d1mo0a_         154 LQAIVDKGVSWENIVIAYEPVWA---------------IGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRII-YGG  217 (257)
T ss_dssp             HHHHHTTTCCSTTEEEEECCGGG---------------TTTSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEE-EES
T ss_pred             HHCCCCCCCCCCCEEEEECCHHH---------------CCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHCCCCCEE-EEC
T ss_conf             32111111255551898665421---------------36554456566656788899999986177560766588-628


Q ss_pred             CCCHHHHHHHHHHHCCC
Q ss_conf             89979999999982993
Q gi|254780537|r  242 TNSDQPAKQVAYETNAS  258 (294)
Q Consensus       242 ~~~~~~~~~ia~e~~~~  258 (294)
                      ..++.-++.|.+.-++.
T Consensus       218 SV~~~N~~~i~~~~~vD  234 (257)
T d1mo0a_         218 SVTADNAAELGKKPDID  234 (257)
T ss_dssp             SCCTTTHHHHTTSTTCC
T ss_pred             CCCHHHHHHHHCCCCCC
T ss_conf             85987999995688988


No 21 
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]}
Probab=46.78  E-value=7.7  Score=16.17  Aligned_cols=136  Identities=13%  Similarity=0.110  Sum_probs=63.0

Q ss_pred             CCCCCEEEEECH------HHHHHHHHHCCCEEEEEEEECCCC----CCCCC-----CCCHHHHHHHCCCCEEEEECCCCC
Q ss_conf             358828999752------899999985189148999626889----80120-----227124577603789999887610
Q gi|254780537|r   20 TTQKKVVLSSFS------IIGDITQNIAKDLVTVTTLVEAGN----DSHSY-----QVTSADAIKIQNADLILCNGLHLE   84 (294)
Q Consensus        20 ~~~~~~Vv~s~~------pl~~iv~~I~gd~v~V~~li~~g~----dpH~y-----e~tp~d~~~i~~Adliv~~G~~~E   84 (294)
                      .+.+|.+++--.      -+..|++.++-.-  ++++...|.    +|+..     ..++...+.+++||+++..|..|.
T Consensus        20 ~Ak~Pvii~G~g~~~a~~~l~~lae~l~~Pv--~~t~~~~g~ip~~hp~~~G~~g~~~~~~~~~~l~~aDlvi~lG~~~~   97 (177)
T d2djia1          20 NSKRPVIYAGIGTMGHGPAVQELARKIKAPV--ITTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSNFP   97 (177)
T ss_dssp             TCSSEEEEECGGGTTCHHHHHHHHHHHTCCE--EECTTCGGGSCTTCTTBCCCSSSSSCHHHHHHHHHCSEEEEESCCCT
T ss_pred             HCCCEEEEECCCHHHHHHHHHHHHHCCCEEE--EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCC
T ss_conf             3899799989476458999998541343379--95233443334444433332223467544213314674588502578


Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf             6899999742355752111237420222100123346301112213567899999999986431888-999999899863
Q gi|254780537|r   85 ETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSN-AKKYELNAREYS  163 (294)
Q Consensus        85 ~~~~~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~-~~~y~~N~~~~~  163 (294)
                      ....  .....++.++|-+..  ++.    ........|-.++=|+..   ..+.+.+.|....+.. .....++.+.+.
T Consensus        98 ~~~~--~~~~~~~~kiI~Id~--d~~----~i~~~~~~d~~i~gD~~~---~L~~L~~~l~~~~~~~~~~~~~~~~~~w~  166 (177)
T d2djia1          98 FSEV--EGTFRNVDNFIQIDI--DPA----MLGKRHHADVAILGDAAL---AIDEILNKVDAVEESAWWTANLKNIANWR  166 (177)
T ss_dssp             TTTT--TTTTTTCSEEEEEES--CGG----GTTSSSCCSEEEESCHHH---HHHHHHHHSCCCCCCHHHHHHHHHHHHHH
T ss_pred             CCCC--EECCCCCCCHHEEEE--CCC----CCCCCCCCCEEEEECHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf             7541--100023660006774--652----258754673589859999---99999986422557478999999999999


Q ss_pred             CCHHH
Q ss_conf             01455
Q gi|254780537|r  164 EKIRN  168 (294)
Q Consensus       164 ~~l~~  168 (294)
                      +.++.
T Consensus       167 e~i~~  171 (177)
T d2djia1         167 EYINM  171 (177)
T ss_dssp             HHHHH
T ss_pred             HHHHH
T ss_conf             99876


No 22 
>d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.95  E-value=7.9  Score=16.08  Aligned_cols=69  Identities=12%  Similarity=0.168  Sum_probs=46.9

Q ss_pred             HHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-----------CCCEEEEEECC
Q ss_conf             9886307844736998266521457752972887226886400078999999976201-----------69718998278
Q gi|254780537|r  174 KTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS-----------HKIKFIFSEST  242 (294)
Q Consensus       174 ~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~-----------~~v~~if~e~~  242 (294)
                      +..+..+...++.+++|.|.|.               +.++..|+|.++.++..+|++           .+++.+ +...
T Consensus       147 ~~~l~~~~~~~~iiIAYEPvWA---------------IGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~iL-YGGS  210 (247)
T d1neya_         147 NAVLEEVKDFTNVVVAYEPVWA---------------IGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRIL-YGGS  210 (247)
T ss_dssp             HHHHHHCCCCTTEEEEECCGGG---------------TTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEE-EESS
T ss_pred             HHHHCCCCCCCCEEEEECCHHC---------------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEE-EECC
T ss_conf             8653344432446998565101---------------46776667266654567888899876323114667489-8078


Q ss_pred             CCHHHHHHHHHHHCCC
Q ss_conf             9979999999982993
Q gi|254780537|r  243 NSDQPAKQVAYETNAS  258 (294)
Q Consensus       243 ~~~~~~~~ia~e~~~~  258 (294)
                      .+++-++.|.+.-++.
T Consensus       211 V~~~N~~~i~~~~~iD  226 (247)
T d1neya_         211 ANGSNAVTFKDKADVD  226 (247)
T ss_dssp             CCTTTGGGGTTCTTCC
T ss_pred             CCHHHHHHHHCCCCCC
T ss_conf             8888999996688988


No 23 
>d1qcza_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Escherichia coli [TaxId: 562]}
Probab=44.05  E-value=8.5  Score=15.89  Aligned_cols=55  Identities=13%  Similarity=0.077  Sum_probs=23.3

Q ss_pred             EEEEEEECCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             48999626889801202271245776037899998876106899999742355752111
Q gi|254780537|r   45 VTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITV  103 (294)
Q Consensus        45 v~V~~li~~g~dpH~ye~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~  103 (294)
                      .++. ++-....||...--.+..+. ++.++|+. |.|+...+.-.+.... ..++|.+
T Consensus        31 ~e~~-v~SAHRtp~~l~~~~~~~~~-~~~~ViIa-~AG~aa~LpgvvA~~t-~~PVIgV   85 (163)
T d1qcza_          31 HHVE-VVSAHRTPDKLFSFAESAEE-NGYQVIIA-GAGGAAHLPGMIAAKT-LVPVLGV   85 (163)
T ss_dssp             EEEE-ECCTTTCHHHHHHHHHHTTT-TTCSEEEE-EECSSCCHHHHHHHSC-SSCEEEE
T ss_pred             EEEE-EECCCCCHHHHHHHHHHHHH-CCCEEEEE-ECCCCCCCCCHHHHHC-CCEEEEC
T ss_conf             6999-84220488999999999997-49769998-5268876520466734-4114511


No 24 
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=40.54  E-value=9.5  Score=15.54  Aligned_cols=37  Identities=16%  Similarity=0.143  Sum_probs=22.1

Q ss_pred             HHHHCCCCEEEEECCCCCH--HHHHHHHHCCCCCCCCCC
Q ss_conf             5776037899998876106--899999742355752111
Q gi|254780537|r   67 AIKIQNADLILCNGLHLEE--TYMKYFTNLKKGTKIITV  103 (294)
Q Consensus        67 ~~~i~~Adliv~~G~~~E~--~~~~~~~~~~~~~~~i~~  103 (294)
                      ++.+.+|||++..|..|..  ..........++.+++.+
T Consensus        87 ~~~~~~aDLvi~iG~~~~~~~~~~~~~~~~~~~~k~I~I  125 (158)
T d1ytla1          87 FDGQGNYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAI  125 (158)
T ss_dssp             TTSSCCCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred             HHCCCCCCEEEEECCCCCCHHHCCCCCCCCCCCCEEEEE
T ss_conf             630367688999777246231124651114888858987


No 25 
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory protein PrpR {Escherichia coli [TaxId: 562]}
Probab=38.68  E-value=10  Score=15.35  Aligned_cols=149  Identities=15%  Similarity=0.158  Sum_probs=82.7

Q ss_pred             EEECHHHHHHHHHHCC---CEEEEEEEECCCCCCCCCCCCHHHHHH-H--CCCCEEEEECCCCCHHHHHHHHHCCCCCCC
Q ss_conf             9975289999998518---914899962688980120227124577-6--037899998876106899999742355752
Q gi|254780537|r   27 LSSFSIIGDITQNIAK---DLVTVTTLVEAGNDSHSYQVTSADAIK-I--QNADLILCNGLHLEETYMKYFTNLKKGTKI  100 (294)
Q Consensus        27 v~s~~pl~~iv~~I~g---d~v~V~~li~~g~dpH~ye~tp~d~~~-i--~~Adliv~~G~~~E~~~~~~~~~~~~~~~~  100 (294)
                      ..|++-|..+.+.|++   +..++..+-.      .|+=....+++ +  .+.|+|+.-|..     ..++++. -+.++
T Consensus         6 ~~~~srL~~l~~~i~~ey~~~~~i~v~~~------~~e~av~~~~~~~~~~~~DviISRG~t-----a~~ir~~-~~iPV   73 (186)
T d2pjua1           6 TVSVTRLFELFRDISLEFDHLANITPIQL------GFEKAVTYIRKKLANERCDAIIAAGSN-----GAYLKSR-LSVPV   73 (186)
T ss_dssp             EECCHHHHHHHHHHHTTTTTTCEEEEECC------CHHHHHHHHHHHTTTSCCSEEEEEHHH-----HHHHHTT-CSSCE
T ss_pred             EEEHHHHHHHHHHHHHHHCCCCEEEEECC------CHHHHHHHHHHHHHCCCCCEEEECCHH-----HHHHHHH-CCCCE
T ss_conf             98889999999999997258862996507------478899999999870899899979638-----9999986-89987


Q ss_pred             CCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
Q ss_conf             11123742022210012334630111221356789999999998643188899999989986301455337899886307
Q gi|254780537|r  101 ITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKV  180 (294)
Q Consensus       101 i~~~~~i~~~~~~~~~~~~~~~dpH~Wldp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~  180 (294)
                      +.+.-              .++      |          |-.+|                             . .....
T Consensus        74 V~I~v--------------s~~------D----------il~al-----------------------------~-~a~~~   93 (186)
T d2pjua1          74 ILIKP--------------SGY------D----------VLQFL-----------------------------A-KAGKL   93 (186)
T ss_dssp             EEECC--------------CHH------H----------HHHHH-----------------------------H-HTTCT
T ss_pred             EEECC--------------CHH------H----------HHHHH-----------------------------H-HHHHH
T ss_conf             99708--------------876------8----------99999-----------------------------9-99975


Q ss_pred             CCCCCEEEEECC----CCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC
Q ss_conf             844736998266----5214577529728872268864000789999999762016971899827899799999999829
Q gi|254780537|r  181 DPEKRWFVTSEG----CLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETN  256 (294)
Q Consensus       181 p~~~~~~v~~H~----af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~  256 (294)
                        .++.-++.|+    .+.-|++-+|++..-..      --++.++...++.+++.|+++|..     +..+-.+|++.|
T Consensus        94 --~~kiavV~~~~~~~~~~~~~~ll~~~i~~~~------~~~~~e~~~~v~~l~~~G~~vVVG-----~~~~~~~A~~~G  160 (186)
T d2pjua1          94 --TSSIGVVTYQETIPALVAFQKTFNLRLDQRS------YITEEDARGQINELKANGTEAVVG-----AGLITDLAEEAG  160 (186)
T ss_dssp             --TSCEEEEEESSCCHHHHHHHHHHTCCEEEEE------ESSHHHHHHHHHHHHHTTCCEEEE-----SHHHHHHHHHTT
T ss_pred             --CCCEEEEECCCCCHHHHHHHHHHCCCEEEEE------ECCHHHHHHHHHHHHHCCCCEEEC-----CHHHHHHHHHCC
T ss_conf             --8978999177625699999999599648999------638899999999999879989999-----859999999849


Q ss_pred             CCEE
Q ss_conf             9344
Q gi|254780537|r  257 ASYG  260 (294)
Q Consensus       257 ~~~~  260 (294)
                      .+.+
T Consensus       161 l~~v  164 (186)
T d2pjua1         161 MTGI  164 (186)
T ss_dssp             SEEE
T ss_pred             CCEE
T ss_conf             9789


No 26 
>d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=36.50  E-value=11  Score=15.12  Aligned_cols=59  Identities=12%  Similarity=0.161  Sum_probs=43.3

Q ss_pred             CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC-----------CCCEEEEEECCCCHHHHHHHH
Q ss_conf             736998266521457752972887226886400078999999976201-----------697189982789979999999
Q gi|254780537|r  184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS-----------HKIKFIFSESTNSDQPAKQVA  252 (294)
Q Consensus       184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~-----------~~v~~if~e~~~~~~~~~~ia  252 (294)
                      ++.+++|.|.|.               +.++..|++.++.++...|++           .+++. ++....++.-++.|.
T Consensus       159 ~~iiIAYEPvWA---------------IGTG~~a~~~~i~e~~~~Ir~~l~~~~~~~~~~~i~i-lYGGSV~~~N~~~i~  222 (251)
T d2btma_         159 KQAVIAYEPIWA---------------IGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRI-QYGGSVKPDNIRDFL  222 (251)
T ss_dssp             TTCEEEECCGGG---------------TTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEE-EEESSCCTTTHHHHH
T ss_pred             CEEEEEECCCCC---------------CCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHCCCCCE-EEECCCCHHHHHHHH
T ss_conf             328998663012---------------4556678826666668999999986406334165858-850897986999996


Q ss_pred             HHHCCC
Q ss_conf             982993
Q gi|254780537|r  253 YETNAS  258 (294)
Q Consensus       253 ~e~~~~  258 (294)
                      +.-++.
T Consensus       223 ~~~~vD  228 (251)
T d2btma_         223 AQQQID  228 (251)
T ss_dssp             TSTTCC
T ss_pred             CCCCCC
T ss_conf             688999


No 27 
>d1u11a_ c.23.8.1 (A:) N5-CAIR mutase (phosphoribosylaminoimidazole carboxylase, PurE) {Acetobacter aceti [TaxId: 435]}
Probab=35.11  E-value=12  Score=14.98  Aligned_cols=31  Identities=6%  Similarity=0.063  Sum_probs=16.7

Q ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf             037899998876106899999742355752111
Q gi|254780537|r   71 QNADLILCNGLHLEETYMKYFTNLKKGTKIITV  103 (294)
Q Consensus        71 ~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i~~  103 (294)
                      .+.++||.. .|++..+.-.+.... ..++|.+
T Consensus        56 ~~~~viIa~-AG~aaaLpgvva~~t-~~PVIgv   86 (159)
T d1u11a_          56 RGLNVIIAG-AGGAAHLPGMCAAWT-RLPVLGV   86 (159)
T ss_dssp             TTCCEEEEE-EESSCCHHHHHHHHC-SSCEEEE
T ss_pred             CCCEEEEEE-ECCCCCCCCCEEEEC-CEEEEEE
T ss_conf             597489987-158887766332213-5057885


No 28 
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]}
Probab=34.64  E-value=12  Score=14.93  Aligned_cols=71  Identities=15%  Similarity=0.274  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHCCCEEEEEEEECCCCCCCCCC---------CCHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             2899999985189148999626889801202---------2712457760378999988761068999997423557521
Q gi|254780537|r   31 SIIGDITQNIAKDLVTVTTLVEAGNDSHSYQ---------VTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKII  101 (294)
Q Consensus        31 ~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye---------~tp~d~~~i~~Adliv~~G~~~E~~~~~~~~~~~~~~~~i  101 (294)
                      .-+..|++.++-.-  +++....|.=|.+..         -++.-...+++||+++..|..|..+..........+.++|
T Consensus        35 ~~l~~lae~~~~Pv--~tt~~~~g~~~~~h~~~~G~~G~~g~~~~~~~~~~aDlil~lG~~l~~~~~~~~~~~~~~~kiI  112 (179)
T d1ybha1          35 DELGRFVELTGIPV--ASTLMGLGSYPCDDELSLHMLGMHGTVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIV  112 (179)
T ss_dssp             HHHHHHHHHHCCCE--EECTTTTTSSCTTSTTEEEECSTTSCHHHHHHHHHCSEEEEESCCCCHHHHSSGGGTTTTSEEE
T ss_pred             HHHHHHHHHHCCCC--EECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEE
T ss_conf             99999876534242--0045666777643333444578868899999997544543203665632246423367778599


Q ss_pred             CC
Q ss_conf             11
Q gi|254780537|r  102 TV  103 (294)
Q Consensus       102 ~~  103 (294)
                      -+
T Consensus       113 ~I  114 (179)
T d1ybha1         113 HI  114 (179)
T ss_dssp             EE
T ss_pred             EE
T ss_conf             99


No 29 
>d1hx0a2 c.1.8.1 (A:1-403) Animal alpha-amylase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=34.03  E-value=12  Score=14.86  Aligned_cols=31  Identities=13%  Similarity=0.085  Sum_probs=16.3

Q ss_pred             HHHHHHH----HCCCEEEEEEEECCCCC----------CCCCCCC
Q ss_conf             9999998----51891489996268898----------0120227
Q gi|254780537|r   33 IGDITQN----IAKDLVTVTTLVEAGND----------SHSYQVT   63 (294)
Q Consensus        33 l~~iv~~----I~gd~v~V~~li~~g~d----------pH~ye~t   63 (294)
                      +.+|+++    |+.-.++..=|.|+..+          -|-|+|+
T Consensus        21 ~~~i~~e~~~yL~~lG~taIwl~P~~e~~~~~~~~~~~y~gY~~~   65 (403)
T d1hx0a2          21 WVDIALECERYLGPKGFGGVQVSPPNENIVVTNPSRPWWERYQPV   65 (403)
T ss_dssp             HHHHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBS
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCEEECCC
T ss_conf             899999999999981998799496815766788999876003687


No 30 
>d1h6qa_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}
Probab=33.19  E-value=12  Score=14.77  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             35678999999999864318889999998998630145
Q gi|254780537|r  130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIR  167 (294)
Q Consensus       130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~  167 (294)
                      -...+.+...|...|.+..|+.-+.|.+|+..+.+.+.
T Consensus        85 ~~yiK~YmK~vk~~L~e~~perv~~Fk~~a~~~vK~Il  122 (168)
T d1h6qa_          85 MSYIKGYMKAIKARLQESNPERVPVFEKNAIGFVKKIL  122 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999999864088899999986799999998


No 31 
>d1xg7a_ a.96.1.6 (A:) Hypothetical protein PF0904 {Pyrococcus furiosus [TaxId: 2261]}
Probab=32.86  E-value=8.3  Score=15.95  Aligned_cols=95  Identities=9%  Similarity=0.049  Sum_probs=55.4

Q ss_pred             HHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCEEEEECCCCCCCC--CCHHHHHHHHHHHCCCCC
Q ss_conf             989986301455337899886307844736998266521457752972887226886400--078999999976201697
Q gi|254780537|r  157 LNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSE--RSPSMMRHAINQMRSHKI  234 (294)
Q Consensus       157 ~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~e--ps~~~l~~~~~~ik~~~v  234 (294)
                      ++++.|...+..+-..+...+.+ +...+++|-.---|+|.++--|-+....    |+.=  |--.+++.+...+.+   
T Consensus       120 ~~~~~yy~~m~~l~~~LA~~l~~-~~~~KTIVFAvKM~gYA~r~~~~~~~p~----p~eIpIPvD~RI~~~t~~~~~---  191 (245)
T d1xg7a_         120 KDLEGYYKNMKMLWKALIKIMGS-REDSKTIVFTVKMFGYASRIAFSRFIPY----PMEIPIPEDLRIKSVTSKLTQ---  191 (245)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHTTSCCCC----CTTSCCCCCHHHHHHHHTTCS---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCC-CCCCCEEEEHHHHHHHHHHHHCCCCCCC----CCCCCCCCHHHHHHHHHCCCC---
T ss_conf             67889985399999999999689-9875634326998999999954778789----878999621899999720230---


Q ss_pred             EEEEEECCCCHHHHHHHHHHHCCCEEEEEECCCCC
Q ss_conf             18998278997999999998299344432012378
Q gi|254780537|r  235 KFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLS  269 (294)
Q Consensus       235 ~~if~e~~~~~~~~~~ia~e~~~~~~~~~~~d~l~  269 (294)
                             ....+....+++++|++   .+.+|++-
T Consensus       192 -------e~~~~fW~~Vak~~~IP---pLHLDSil  216 (245)
T d1xg7a_         192 -------EKPTKFWMKIGQESGVP---PLHIDSLI  216 (245)
T ss_dssp             -------SCHHHHHHHHHHHHTCC---HHHHHHHH
T ss_pred             -------HHHHHHHHHHHHCCCCC---CCHHHHHH
T ss_conf             -------14999999998624998---21027789


No 32 
>d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]}
Probab=31.63  E-value=13  Score=14.61  Aligned_cols=59  Identities=8%  Similarity=0.124  Sum_probs=43.6

Q ss_pred             CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCC----------CCCEEEEEECCCCHHHHHHHHH
Q ss_conf             736998266521457752972887226886400078999999976201----------6971899827899799999999
Q gi|254780537|r  184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS----------HKIKFIFSESTNSDQPAKQVAY  253 (294)
Q Consensus       184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~----------~~v~~if~e~~~~~~~~~~ia~  253 (294)
                      ++.+++|.|.|.               +.++..|++.++.++...+++          +++++ ++....++.-+..+.+
T Consensus       160 ~~iiIAYEPvWA---------------IGtG~~a~~~~~~~~~~~ir~~l~~~~~~~~~~v~i-LYGGSV~~~N~~~i~~  223 (255)
T d1trea_         160 EGAVIAYEPVWA---------------IGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVII-QYGGSVNASNAAELFA  223 (255)
T ss_dssp             TTCEEEECCGGG---------------SSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEE-EECSCCCTTTHHHHHT
T ss_pred             CCCEEEECCHHH---------------CCCCCCCCCCHHHHHHHHHHHHHHHHCHHHCCCCCE-EECCCCCHHHHHHHHC
T ss_conf             670799651653---------------155546674102456788888886403222377518-8617868738999966


Q ss_pred             HHCCC
Q ss_conf             82993
Q gi|254780537|r  254 ETNAS  258 (294)
Q Consensus       254 e~~~~  258 (294)
                      .-++.
T Consensus       224 ~~~vd  228 (255)
T d1trea_         224 QPDID  228 (255)
T ss_dssp             STTCC
T ss_pred             CCCCC
T ss_conf             88998


No 33 
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}
Probab=30.97  E-value=13  Score=14.53  Aligned_cols=74  Identities=14%  Similarity=0.087  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHCCC-CCEEEEEECCCCHHHHHHHHHH-HCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHC
Q ss_conf             89999999762016-9718998278997999999998-299344432012378777886899999999999998620
Q gi|254780537|r  219 PSMMRHAINQMRSH-KIKFIFSESTNSDQPAKQVAYE-TNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL  293 (294)
Q Consensus       219 ~~~l~~~~~~ik~~-~v~~if~e~~~~~~~~~~ia~e-~~~~~~~~~~~d~l~~~~~~~~~Y~~~m~~N~~~l~~aL  293 (294)
                      +.++.+.++.+|+. +++++.-=.-.+++.++.+.+- +..=+++--.++.+.+... ...+++.+..-++.|++||
T Consensus       185 ~~~~~~~i~~ik~~t~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~~i~~~~~-~~~~~~~~~~~~~~lk~al  260 (261)
T d1rd5a_         185 NPRVESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAAS-PKQGLRRLEEYARGMKNAL  260 (261)
T ss_dssp             CTHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHCCCCEEEECHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHH
T ss_conf             157999998762036787699817799999999986599999988899999997578-7899999999999999862


No 34 
>d2ez9a1 c.31.1.3 (A:183-365) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]}
Probab=30.69  E-value=14  Score=14.50  Aligned_cols=63  Identities=13%  Similarity=0.211  Sum_probs=36.7

Q ss_pred             CCCCEEEEE------CHHHHHHHHHHCCCEEEEEEEECCCCCCCCCC---------CCHHHHHHHCCCCEEEEECCCCCH
Q ss_conf             588289997------52899999985189148999626889801202---------271245776037899998876106
Q gi|254780537|r   21 TQKKVVLSS------FSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQ---------VTSADAIKIQNADLILCNGLHLEE   85 (294)
Q Consensus        21 ~~~~~Vv~s------~~pl~~iv~~I~gd~v~V~~li~~g~dpH~ye---------~tp~d~~~i~~Adliv~~G~~~E~   85 (294)
                      +++|.|++-      -.-+..|++.++-.-  +++....|.=|+++.         -++.-...+++||+++..|..|..
T Consensus        30 A~rPvii~G~G~~~a~~~l~~lae~~~~Pv--~tt~~~~g~~~~~hp~~~G~~G~~~~~~~~~~i~~aDlil~vG~~l~~  107 (183)
T d2ez9a1          30 AERPLIYYGIGARKAGKELEQLSKTLKIPL--MSTYPAKGIVADRYPAYLGSANRVAQKPANEALAQADVVLFVGNNYPF  107 (183)
T ss_dssp             CSSEEEEECGGGTTCHHHHHHHHHHHTCCE--EECGGGTTSSCTTCTTBCCCCSSSSCHHHHHHHHHCSEEEEESCCCTT
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHCCCEEE--EEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEECCCCC
T ss_conf             799399983780635499998764043379--862145544323476433332234667777666246745886214675


No 35 
>d2ji7a1 c.31.1.3 (A:195-369) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]}
Probab=30.50  E-value=14  Score=14.48  Aligned_cols=63  Identities=11%  Similarity=0.185  Sum_probs=37.6

Q ss_pred             CCCCCEEEEEC--------HHHHHHHHHHCCCEEEEEEEECCCCCCCC--CCCCHHHHHHHCCCCEEEEECCCCC
Q ss_conf             35882899975--------28999999851891489996268898012--0227124577603789999887610
Q gi|254780537|r   20 TTQKKVVLSSF--------SIIGDITQNIAKDLVTVTTLVEAGNDSHS--YQVTSADAIKIQNADLILCNGLHLE   84 (294)
Q Consensus        20 ~~~~~~Vv~s~--------~pl~~iv~~I~gd~v~V~~li~~g~dpH~--ye~tp~d~~~i~~Adliv~~G~~~E   84 (294)
                      .+++|.|++--        ..+..+++..+-.-  +++....|.=|++  +-..+.-...+.+||+++..|..|.
T Consensus        18 ~A~rPvii~G~g~~~~~a~~~l~~lae~~~iPv--~~t~~~~g~~~~~h~~~~~~~~~~~l~~aDlii~vG~~~~   90 (175)
T d2ji7a1          18 NAKRPVIMLGKGAAYAQCDDEIRALVEETGIPF--LPMGMAKGLLPDNHPQSAAATRAFALAQCDVCVLIGARLN   90 (175)
T ss_dssp             TCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCE--EECTTTBTTBCTTCTTBCGGGHHHHHHHCSEEEEESCCSS
T ss_pred             HCCCEEEEECCCCCCCCCHHHHHHHHHHCEEEE--ECCCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEECCCC
T ss_conf             489989998879241102799999765304102--1234223568875433222110112311231013512578


No 36 
>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=29.34  E-value=14  Score=14.35  Aligned_cols=45  Identities=13%  Similarity=0.122  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf             078999999976201697189982789979999999982993444
Q gi|254780537|r  217 RSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGG  261 (294)
Q Consensus       217 ps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~  261 (294)
                      ..++.+.++.+.+.+.+++++...+..-+..+..++++.|+.+++
T Consensus        82 vp~~~~~~~~~e~~~~g~k~v~~~~G~~~ee~~~~a~~~gi~vig  126 (139)
T d2d59a1          82 VKPKLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLIIVA  126 (139)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCEEEE
T ss_pred             ECHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCEEEC
T ss_conf             388997889999997099999994264399999999997998895


No 37 
>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=28.74  E-value=15  Score=14.28  Aligned_cols=84  Identities=8%  Similarity=-0.043  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH-----HHHHHCCCEEEEECCCCCCCCCCH
Q ss_conf             643188899999989986301455337899886307844736998266521-----457752972887226886400078
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV-----YLAEDFGFKSLYLWPINSDSERSP  219 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~-----Y~~~~yGl~~~~~~~~~~~~eps~  219 (294)
                      .-+.|..+-....+.+++.-+++...+......+-+....+.--++||++.     .+++++--..-++..+  +..-+.
T Consensus       246 ~~l~p~~a~ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf--~~~g~~  323 (398)
T d1qgna_         246 GALNPNAAYLIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSF--EVDGDL  323 (398)
T ss_dssp             CCCCHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEE--EESSCH
T ss_pred             CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCHHHHHHHCCCCCCEEEE--EECCCH
T ss_conf             748979999998333477889999889999999999739882005788888993365554325898720466--643999


Q ss_pred             HHHHHHHHHHC
Q ss_conf             99999997620
Q gi|254780537|r  220 SMMRHAINQMR  230 (294)
Q Consensus       220 ~~l~~~~~~ik  230 (294)
                      ....++.+.+|
T Consensus       324 ~~a~~f~~~L~  334 (398)
T d1qgna_         324 LTTAKFVDALK  334 (398)
T ss_dssp             HHHHHHHHHCS
T ss_pred             HHHHHHHHCCC
T ss_conf             99999997288


No 38 
>d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]}
Probab=25.39  E-value=17  Score=13.89  Aligned_cols=59  Identities=10%  Similarity=0.195  Sum_probs=42.6

Q ss_pred             CCEEEEECCCCHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCC-----------CCEEEEEECCCCHHHHHHHH
Q ss_conf             7369982665214577529728872268864000789999999762016-----------97189982789979999999
Q gi|254780537|r  184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSH-----------KIKFIFSESTNSDQPAKQVA  252 (294)
Q Consensus       184 ~~~~v~~H~af~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~-----------~v~~if~e~~~~~~~~~~ia  252 (294)
                      ++.+++|.|.|.               +..+..|++.++.++..+|++.           +++. ++....+++-++.+.
T Consensus       159 ~~iiIAYEPvWA---------------IGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~~~i-lYGGSV~~~N~~~i~  222 (249)
T d1kv5a_         159 AKVVIAYEPVWA---------------IGTGKVATPQQAQEAHALISSWVSSKIGADVAGELRI-LYGGSVNGKNARTLY  222 (249)
T ss_dssp             GGEEEEECCGGG---------------SSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCE-EEESSCCTTTHHHHH
T ss_pred             CCEEEECCCEEC---------------CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCE-EECCCCCHHHHHHHH
T ss_conf             245885175211---------------3655555523555566777788887507434377748-971897986999996


Q ss_pred             HHHCCC
Q ss_conf             982993
Q gi|254780537|r  253 YETNAS  258 (294)
Q Consensus       253 ~e~~~~  258 (294)
                      +.-++.
T Consensus       223 ~~~~vD  228 (249)
T d1kv5a_         223 QQRDVN  228 (249)
T ss_dssp             TSTTCC
T ss_pred             CCCCCC
T ss_conf             688999


No 39 
>d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]}
Probab=25.03  E-value=2.8  Score=19.16  Aligned_cols=12  Identities=8%  Similarity=-0.352  Sum_probs=6.4

Q ss_pred             CEEEEECCCCHH
Q ss_conf             369982665214
Q gi|254780537|r  185 RWFVTSEGCLVY  196 (294)
Q Consensus       185 ~~~v~~H~af~Y  196 (294)
                      -..+|-|+..|+
T Consensus       161 aD~lTVh~~~G~  172 (324)
T d2fdsa1         161 SDSCTINVYMGT  172 (324)
T ss_dssp             CSEEEECCTTCS
T ss_pred             CCEEEECCCCCH
T ss_conf             767986156748


No 40 
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=24.83  E-value=17  Score=13.82  Aligned_cols=71  Identities=10%  Similarity=0.151  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHCCCE
Q ss_conf             78999999999864318889-------9999989986301455337899886307844736998266521457752972
Q gi|254780537|r  133 AMIYIENIRKALTALDPSNA-------KKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFK  204 (294)
Q Consensus       133 ~~~~a~~I~~~L~~~dP~~~-------~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~Y~~~~yGl~  204 (294)
                      ...++..+.+.+...+|+-.       +....--+.|.+-|+.-...+...++....++...+...++| .+-+.|||.
T Consensus        80 l~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~f~~tl~~G~~~~~~~i~~~~~~~~~~l~g~~af-~LydTyGfP  157 (221)
T d1riqa1          80 LYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVF-TAYDTYGFP  157 (221)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHH-HHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HHHHCCCCC
T ss_conf             456689999985100100021799999999999999999999998889999998875278888999999-998702568


No 41 
>d1txja_ b.88.1.2 (A:) Translationally controlled tumor protein TCTP (histamine-releasing factor) {Plasmodium knowlesi [TaxId: 5850]}
Probab=24.73  E-value=17  Score=13.81  Aligned_cols=38  Identities=18%  Similarity=0.245  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             35678999999999864318889999998998630145
Q gi|254780537|r  130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIR  167 (294)
Q Consensus       130 p~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~  167 (294)
                      -...+.+...|...|.+..|+.-+.|.+++..+.+.+.
T Consensus        88 ~~yiK~YmK~v~~~L~e~~perV~~Fk~~a~~~vK~Il  125 (171)
T d1txja_          88 SVYIKNYMQKILKYLEEKKPDRVDVFKTKAQPLIKHIL  125 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999998764097789999987899999998


No 42 
>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}
Probab=24.64  E-value=17  Score=13.80  Aligned_cols=39  Identities=8%  Similarity=0.146  Sum_probs=26.9

Q ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             9999998-64318889999998998630145533789988
Q gi|254780537|r  138 ENIRKAL-TALDPSNAKKYELNAREYSEKIRNSILPLKTR  176 (294)
Q Consensus       138 ~~I~~~L-~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~  176 (294)
                      ..+++.+ .-+.|..+-....+.+++..+++...+.....
T Consensus       231 ~~~~~~~G~~~~p~da~ll~rgl~TL~lRm~~~~~nA~~l  270 (392)
T d1gc0a_         231 QGLKDMTGAVLSPHDAALLMRGIKTLNLRMDRHCANAQVL  270 (392)
T ss_dssp             THHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf             9999703886880457999822060899999999999999


No 43 
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.53  E-value=17  Score=13.79  Aligned_cols=18  Identities=22%  Similarity=0.012  Sum_probs=10.2

Q ss_pred             HHHHHCCCCCEEEEEECC
Q ss_conf             997620169718998278
Q gi|254780537|r  225 AINQMRSHKIKFIFSEST  242 (294)
Q Consensus       225 ~~~~ik~~~v~~if~e~~  242 (294)
                      .....+..+.+++..|-.
T Consensus       197 ~~~~~~~~~~p~~~~e~g  214 (304)
T d1bhga3         197 FENWYKKYQKPIIQSEYG  214 (304)
T ss_dssp             HHHHHHHSCSCEEEEECC
T ss_pred             HHHHHCCCCCCEEEECCH
T ss_conf             777632389986873120


No 44 
>d2acva1 c.87.1.10 (A:3-463) Triterpene UDP-glucosyl transferase UGT71G1 {Medicago truncatula [TaxId: 3880]}
Probab=23.03  E-value=18  Score=13.60  Aligned_cols=25  Identities=8%  Similarity=-0.069  Sum_probs=8.6

Q ss_pred             CCCEEEEEECCCCH-HHHHHHHHHHC
Q ss_conf             69718998278997-99999999829
Q gi|254780537|r  232 HKIKFIFSESTNSD-QPAKQVAYETN  256 (294)
Q Consensus       232 ~~v~~if~e~~~~~-~~~~~ia~e~~  256 (294)
                      +||+.|...-...+ ..++.++++.|
T Consensus       367 ~GVP~l~~P~~~DQ~~nA~rlve~~G  392 (461)
T d2acva1         367 FGVPILTWPIYAEQQLNAFRLVKEWG  392 (461)
T ss_dssp             TTCCEEECCCSTTHHHHHHHHHHTSC
T ss_pred             CCCCEEECCCCCCHHHHHHHHHHHHC
T ss_conf             59998967760002889999999849


No 45 
>d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]}
Probab=22.56  E-value=19  Score=13.53  Aligned_cols=43  Identities=12%  Similarity=0.072  Sum_probs=35.9

Q ss_pred             CHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCCEEE
Q ss_conf             78999999976201697189982789979999999982993444
Q gi|254780537|r  218 SPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASYGG  261 (294)
Q Consensus       218 s~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~~~~~  261 (294)
                      ..+.|-+-...+++.|.-.|..| -.+.++++.|.+.+++++++
T Consensus       157 e~~~l~~~a~~le~AGa~~ivlE-~Vp~~va~~It~~~~iptIg  199 (260)
T d1o66a_         157 KAQALLNDAKAHDDAGAAVVLME-CVLAELAKKVTETVSCPTIG  199 (260)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEE-SCCHHHHHHHHHHCSSCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHEHHHH-HCCHHHHHHHHHHHCCEEEE
T ss_conf             05999999999997332332554-40077899998642501554


No 46 
>d1n2za_ c.92.2.2 (A:) Vitamin B12 binding protein BtuF {Escherichia coli [TaxId: 562]}
Probab=21.50  E-value=20  Score=13.40  Aligned_cols=41  Identities=10%  Similarity=-0.065  Sum_probs=22.2

Q ss_pred             HHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf             145775297288722688640007899999997620169718998278
Q gi|254780537|r  195 VYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSEST  242 (294)
Q Consensus       195 ~Y~~~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~  242 (294)
                      +.+.+..|.+.++-.........|...+       -..+..+||....
T Consensus       156 ~~~i~~aG~~nv~~~~~~~~~~vs~E~i-------~~~dPDvIi~~~~  196 (245)
T d1n2za_         156 NQVLEVCGGENIFKDSRVPWPQVSREQV-------LARSPQAIVITGG  196 (245)
T ss_dssp             HHHHHHTTEEETTTTCSSSSCBCCHHHH-------HTTCCSEEEEESC
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCHHHH-------HHHCCCEEEEECC
T ss_conf             8999870775333445678876686778-------7609999999589


No 47 
>d1ko7a1 c.98.2.1 (A:1-129) HPr kinase/phoshatase HprK N-terminal domain {Staphylococcus xylosus [TaxId: 1288]}
Probab=21.30  E-value=20  Score=13.37  Aligned_cols=46  Identities=7%  Similarity=-0.001  Sum_probs=34.1

Q ss_pred             CCCHHHHHHHHHHHCCCCCEEEE-EECCCCHHHHHHHHHHHCCCEEE
Q ss_conf             00789999999762016971899-82789979999999982993444
Q gi|254780537|r  216 ERSPSMMRHAINQMRSHKIKFIF-SESTNSDQPAKQVAYETNASYGG  261 (294)
Q Consensus       216 eps~~~l~~~~~~ik~~~v~~if-~e~~~~~~~~~~ia~e~~~~~~~  261 (294)
                      ..++....+.++.+-+.+++|+. +.....++.+..+|++.++|+..
T Consensus        63 ~~~~~~~~~~i~~l~~~~~~~lIit~g~~~p~~li~~a~~~~iPll~  109 (129)
T d1ko7a1          63 LLPDEERKGRMRKLCRPETPAIIVTRDLEPPEELIEAAKEHETPLIT  109 (129)
T ss_dssp             HSCHHHHTTHHHHHCCTTCCCEEECTTCCCCHHHHHHHHHTTCCEEE
T ss_pred             HCCCHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHCCEEEE
T ss_conf             25807899999998178986899979999989999999980984999


No 48 
>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}
Probab=21.04  E-value=20  Score=13.33  Aligned_cols=51  Identities=14%  Similarity=-0.062  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCEEEEECCCCH
Q ss_conf             643188899999989986301455337899886307844736998266521
Q gi|254780537|r  145 TALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV  195 (294)
Q Consensus       145 ~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~~~~~p~~~~~~v~~H~af~  195 (294)
                      .-+.|..+-......+++.-+++...+.......-+....++--++||++.
T Consensus       270 ~~~sP~~a~l~~rgl~TL~lRm~~~~~nA~~vA~~L~~hp~V~~V~yPgL~  320 (421)
T d2ctza1         270 QALGPFEAWVVLLGMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLP  320 (421)
T ss_dssp             CCCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTST
T ss_pred             CCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf             879979999885677400567999999899987644148974699668747


No 49 
>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}
Probab=20.53  E-value=21  Score=13.26  Aligned_cols=70  Identities=13%  Similarity=0.058  Sum_probs=47.2

Q ss_pred             EEEECCCCHHHH---------HHCCCEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCC
Q ss_conf             998266521457---------75297288722688640007899999997620169718998278997999999998299
Q gi|254780537|r  187 FVTSEGCLVYLA---------EDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNA  257 (294)
Q Consensus       187 ~v~~H~af~Y~~---------~~yGl~~~~~~~~~~~~eps~~~l~~~~~~ik~~~v~~if~e~~~~~~~~~~ia~e~~~  257 (294)
                      =+|+|-||+...         .++|++.+-..|-.+...-....|+++++.   .+-..|..-...++.-++.|.+ +|+
T Consensus       116 ~vTFHRAfD~~~d~~~al~~Li~lG~~rILTSGg~~~a~~G~~~L~~L~~~---a~~~iIm~GgGI~~~Ni~~l~~-~g~  191 (247)
T d1twda_         116 AVTFHRAFDMCANPLYTLNNLAELGIARVLTSGQKSDALQGLSKIMELIAH---RDAPIIMAGAGVRAENLHHFLD-AGV  191 (247)
T ss_dssp             EEEECGGGGGCSCHHHHHHHHHHHTCCEEEECTTSSSTTTTHHHHHHHHTS---SSCCEEEEESSCCTTTHHHHHH-HTC
T ss_pred             CEEEEHHHHHHCCHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHH---CCCCEEEECCCCCHHHHHHHHH-CCC
T ss_conf             725300246528999999999766978675157988656779999999983---6996899548789899999997-699


Q ss_pred             CEE
Q ss_conf             344
Q gi|254780537|r  258 SYG  260 (294)
Q Consensus       258 ~~~  260 (294)
                      +-.
T Consensus       192 ~e~  194 (247)
T d1twda_         192 LEV  194 (247)
T ss_dssp             SEE
T ss_pred             CEE
T ss_conf             879


No 50 
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}
Probab=20.46  E-value=21  Score=13.25  Aligned_cols=22  Identities=14%  Similarity=0.212  Sum_probs=15.6

Q ss_pred             HHHHHHHHHCCCCCEEEEEECC
Q ss_conf             9999997620169718998278
Q gi|254780537|r  221 MMRHAINQMRSHKIKFIFSEST  242 (294)
Q Consensus       221 ~l~~~~~~ik~~~v~~if~e~~  242 (294)
                      +-.-+.+.|++++++|-+....
T Consensus       195 ya~lL~~ki~~~~~~~~LvNTG  216 (318)
T d1j3ba1         195 YARMLGEKIRKHAPRVYLVNTG  216 (318)
T ss_dssp             HHHHHHHHHHHHCCEEEEEECS
T ss_pred             HHHHHHHHHHHCCCCEEEEECC
T ss_conf             8999999998669748997045


Done!