RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780537|ref|YP_003064950.1| periplasmic solute binding
protein [Candidatus Liberibacter asiaticus str. psy62]
(294 letters)
>3hh8_A Metal ABC transporter substrate-binding lipoprotein; metal binding,
cell membrane, copper, copper transport, ION transport;
1.87A {Streptococcus pyogenes serotype M1} PDB: 1psz_A
Length = 294
Score = 211 bits (537), Expect = 2e-55
Identities = 91/284 (32%), Positives = 155/284 (54%), Gaps = 7/284 (2%)
Query: 16 SASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADL 75
+ +A + K V+++ SII D+T+ IA D + + ++V G D H Y+ DA K NAD+
Sbjct: 10 AKTAKSDKLKVVATNSIIADMTKAIAGDKIDLHSIVPIGQDPHEYEPLPEDAEKTSNADV 69
Query: 76 ILCNGLHLEETYMKYFTNL------KKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMS 129
I NG++LE+ +FT L K V+DGI+ I + S + +PHAW++
Sbjct: 70 IFYNGINLEDGGQAWFTKLVKNAQKTKNKDYFAVSDGIDVIYLEGA-SEKGKEDPHAWLN 128
Query: 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVT 189
L N +IY +NI K L A DP N + YE N + Y K+ K++ + + K+ VT
Sbjct: 129 LENGIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVT 188
Query: 190 SEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAK 249
SEGC Y ++ +G S Y+W IN++ E +P + I +++ K +F ES+ +P +
Sbjct: 189 SEGCFKYFSKAYGVPSAYIWEINTEEEGTPDQISSLIEKLKVIKPSALFVESSVDRRPME 248
Query: 250 QVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
V+ ++ ++ DS++K P +Y +++++L KI + L
Sbjct: 249 TVSKDSGIPIYSEIFTDSIAKKGKPGDSYYAMMKWNLDKISEGL 292
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport
systems, photosynthesis, cyanobacteria, disulfide bond,
metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Length = 321
Score = 201 bits (511), Expect = 2e-52
Identities = 114/277 (41%), Positives = 177/277 (63%), Gaps = 2/277 (0%)
Query: 17 ASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLI 76
T +KK VL++F+++ D+ QN+A D + V ++ G + H Y+ T +D +K Q+ADLI
Sbjct: 39 QGETEEKKKVLTTFTVLADMVQNVAGDKLVVESITRIGAEIHGYEPTPSDIVKAQDADLI 98
Query: 77 LCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIY 136
L NG++LE + ++ N+K + +T+GI PI +++ +PNPHAWMS NA++Y
Sbjct: 99 LYNGMNLERWFEQFLGNVKD-VPSVVLTEGIEPIPIADG-PYTDKPNPHAWMSPRNALVY 156
Query: 137 IENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVY 196
+ENIR+A LDP NAK Y NA YSE+++ L +E+V +R+ V+ EG Y
Sbjct: 157 VENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSY 216
Query: 197 LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETN 256
LA D+G + +Y+WPIN++ + +P ++ I +++++ + IF EST SD+ KQVA T
Sbjct: 217 LARDYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATG 276
Query: 257 ASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
A +GG LYVDSLS +GP PT+LDLL + I + L
Sbjct: 277 ARFGGNLYVDSLSTEEGPVPTFLDLLEYDARVITNGL 313
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding
receptor, metal-binding, helical backbone, alpha/beta
domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Length = 286
Score = 187 bits (475), Expect = 3e-48
Identities = 72/287 (25%), Positives = 124/287 (43%), Gaps = 15/287 (5%)
Query: 16 SASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADL 75
+ TQ V++SF + +T+ ++ DL V ++++G HS++ + D I +ADL
Sbjct: 5 NPKQPTQGMSVVTSFYPMYAMTKEVSGDLNDVR-MIQSGAGIHSFEPSVNDVAAIYDADL 63
Query: 76 ILCNGLHLEETYMKYFTNLKKGTKII---------TVTDGINPIGVSEDTSVDSEPNPHA 126
+ + LE NLKK + G+ + V++ + +PH
Sbjct: 64 FVYHSHTLEAWARDLDPNLKKSKVDVFEASKPLTLDRVKGLEDMEVTQGIDPATLYDPHT 123
Query: 127 WMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRW 186
W A NI K L LDP + Y NA+ + ++ + +KV +
Sbjct: 124 WTDPVLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVR--SKT 181
Query: 187 FVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQ 246
FVT YLA+ FG K L + I+ + E SP ++ + ++ + +K IF+E + +
Sbjct: 182 FVTQHTAFSYLAKRFGLKQLGISGISPEQEPSPRQLKEIQDFVKEYNVKTIFAEDNVNPK 241
Query: 247 PAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
A +A T A V + L TYL+ LR +L + L
Sbjct: 242 IAHAIAKSTGAK---VKTLSPLEAAPSGNKTYLENLRANLEVLYQQL 285
>1pq4_A Periplasmic binding protein component of AN ABC type zinc uptake
transporter; ZNUA, loop, metal-binding, metal binding
protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB:
2ov3_A 2ov1_A
Length = 291
Score = 182 bits (462), Expect = 9e-47
Identities = 60/297 (20%), Positives = 106/297 (35%), Gaps = 42/297 (14%)
Query: 26 VLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEE 85
+ S + I DLV V+ LV ND H+Y+ + A+ + GL E+
Sbjct: 5 ITVSIPPQQYFLEKIGGDLVRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGFEQ 64
Query: 86 TYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSE------------------------ 121
+++ K+I GI P+ + + E
Sbjct: 65 PWLEKLKAANANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAK 124
Query: 122 -----PNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTR 176
+PH W+S T I K L LDP N +YE N + ++ L
Sbjct: 125 GALMVADPHIWLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQI 184
Query: 177 IEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKF 236
++ + +R F+ Y A D+ + + E S ++ I+ + + +
Sbjct: 185 LQPLP--QRKFIVFHPSWAYFARDYNLVQIPIEV--EGQEPSAQELKQLIDTAKENNLTM 240
Query: 237 IFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
+F E+ S + ++ +A E A GV +D L A + L+ KI +
Sbjct: 241 VFGETQFSTKSSEAIAAEIGA---GVELLDPL------AADWSSNLKAVAQKIANAN 288
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding
protein, ABC transporter; 1.80A {Treponema pallidum}
SCOP: c.92.2.2 PDB: 1k0f_A
Length = 313
Score = 179 bits (454), Expect = 8e-46
Identities = 71/295 (24%), Positives = 137/295 (46%), Gaps = 8/295 (2%)
Query: 4 YFICLLFSYIPMSASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVT 63
YF + S+ A+A K +V+++ +I D +NIA+ V + L+ G D H Y T
Sbjct: 20 YFQGAMGSFGSKDAAAD-GKPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTAT 78
Query: 64 SADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPN 123
+ D + NADLIL NGLHLE + F+ L+ ++ V++ I + ++E +
Sbjct: 79 AGDVEWLGNADLILYNGLHLETKMGEVFSKLRGSRLVVAVSETIPVS--QRLSLEEAEFD 136
Query: 124 PHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPE 183
PH W + ++ + ++L L P +++ + Y +++ ++ + + + E
Sbjct: 137 PHVWFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLPAE 196
Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN 243
+R VT+ Y + +GF+ L +++ SE S M+ + K+ IF ES+
Sbjct: 197 RRVLVTAHDAFGYFSRAYGFEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSI 256
Query: 244 SDQPAKQVAYETNA-----SYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
+ + + A GG L+ D++ TY+ ++ ++ IV L
Sbjct: 257 PHKNVEALRDAVQARGHVVQIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVAAL 311
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.60A {Bacillus subtilis}
Length = 312
Score = 172 bits (435), Expect = 1e-43
Identities = 72/289 (24%), Positives = 138/289 (47%), Gaps = 13/289 (4%)
Query: 16 SASATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADL 75
SA + K V+++F + + T+ I KD V L+ + + H ++ T D IQ+ADL
Sbjct: 14 SADSKGDKLHVVTTFYPMYEFTKQIVKDKGDVDLLIPSSVEPHDWEPTPKDIANIQDADL 73
Query: 76 ILCNGLHLEETYMKYFTNLKKGTKI-ITVTDGINPIGVSE---------DTSVDSEPNPH 125
+ N ++E ++ +G + + + GI+ + SE + +PH
Sbjct: 74 FVYNSEYMETWVPSAEKSMGQGHAVFVNASKGIDLMEGSEEEHEEHDHGEHEHSHAMDPH 133
Query: 126 AWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKR 185
W+S A ++NI + DP N + YE N++EY K+++ +T +K + K+
Sbjct: 134 VWLSPVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAE--KK 191
Query: 186 WFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSD 245
F+T YLA+++G K + + ++ D E S + + + H +K I+ E S
Sbjct: 192 EFITQHTAFGYLAKEYGLKQVPIAGLSPDQEPSAASLAKLKTYAKEHNVKVIYFEEIASS 251
Query: 246 QPAKQVAYETNASYGGVLYVDSLSKPDGPAP-TYLDLLRFSLTKIVDTL 293
+ A +A E A + ++ LSK + Y+D+++ +L + D+L
Sbjct: 252 KVADTLASEIGAKTEVLNTLEGLSKEEQDKGLGYIDIMKQNLDALKDSL 300
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal
binding protein; 2.40A {Streptococcus pneumoniae}
Length = 284
Score = 158 bits (400), Expect = 1e-39
Identities = 63/285 (22%), Positives = 127/285 (44%), Gaps = 15/285 (5%)
Query: 18 SATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLIL 77
S T + +++SF I + + ++ DL V ++++ + HS++ ++ D I +AD+ +
Sbjct: 5 SQTGKGMKIVTSFYPIYAMVKEVSGDLNDVR-MIQSSSGIHSFEPSANDIAAIYDADVFV 63
Query: 78 CNGLHLEETYMKYFTNLKKG---------TKIITVTDGINPIGVSEDTSVDSEPNPHAWM 128
+ LE NLKK + G+ + + + +PH W+
Sbjct: 64 YHSHTLESWAGSLDPNLKKSKVKVLEASEGMTLERVPGLEDVEAGDGVDEKTLYDPHTWL 123
Query: 129 SLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFV 188
A + I L+ +D + + Y+ NA+ + +K + + + EK + FV
Sbjct: 124 DPEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQ--KTFV 181
Query: 189 TSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPA 248
T YLA+ FG L + I+ + E SP + ++++K+K IF+ES S + A
Sbjct: 182 TQHTAFSYLAKRFGLNQLGIAGISPEQEPSPRQLTEIQEFVKTYKVKTIFTESNASSKVA 241
Query: 249 KQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
+ + T G+ ++ L TYL+ L +++ + + L
Sbjct: 242 ETLVKSTGV---GLKTLNPLESDPQNDKTYLENLEENMSILAEEL 283
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of
two (beta/ALFA)4 domains, metal transport; 1.70A
{Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A
2ogw_A
Length = 284
Score = 155 bits (392), Expect = 1e-38
Identities = 50/285 (17%), Positives = 101/285 (35%), Gaps = 22/285 (7%)
Query: 26 VLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEE 85
V++S +G I IA + L+ G H Y + +D ++QNADL++ G +E
Sbjct: 2 VVASLKPVGFIASAIADGVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEA 61
Query: 86 TYMKYFTNLKKGTKIIT-VTDGINPIGVSE---------------DTSVDSEPNPHAWMS 129
K + L ++ + + P+ + + + N H W+S
Sbjct: 62 FMQKPVSKLPGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWLS 121
Query: 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVT 189
A I L L P + K + N +++ + + + + E + + +
Sbjct: 122 PEIARATAVAIHGKLVELMPQSRAKLDANLKDF--EAQLASTETQVGNELAPLKGKGYFV 179
Query: 190 SEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAK 249
Y + FG L + +N + + + Q+ K +F+E +
Sbjct: 180 FHDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVE 239
Query: 250 QVAYETNASYGGVLYVDSL-SKPDGPAPTYLDLLRFSLTKIVDTL 293
VA T+ + +D L + +Y + L + L
Sbjct: 240 SVARGTSVR---MGTLDPLGTNIKLGKTSYSEFLSQLANQYASCL 281
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 44.9 bits (106), Expect = 2e-05
Identities = 62/357 (17%), Positives = 98/357 (27%), Gaps = 175/357 (49%)
Query: 26 VLS---SFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCN--G 80
+LS S +IG + Q L H Y VT G
Sbjct: 231 LLSIPISCPLIG-VIQ-----------LA------H-YVVT--------------AKLLG 257
Query: 81 LHLEETYMKYFTNLKKGTK-----IITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMI 135
E + KG ++T ++ DS W S
Sbjct: 258 FTPGE-----LRSYLKGATGHSQGLVTAV------AIA---ETDS------WES------ 291
Query: 136 YIENIRKAL----------------TALDPSNAKKYELNAREYSE-------KIRNSILP 172
+ ++RKA+ T+L PS + ++ E +E I N L
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILE----DSLENNEGVPSPMLSISN--LT 345
Query: 173 ---LKTRIEKVD---PEKRWFVTSEGCLVYLAEDF---G-FKSLY---LW------PINS 213
++ + K + P + S LV A++ G +SLY L P
Sbjct: 346 QEQVQDYVNKTNSHLPAGKQVEIS---LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL 402
Query: 214 D------SERSPSM-MR--------HA----------INQMRSHKIKFIFSESTNSDQPA 248
D SER R H+ + + + F A
Sbjct: 403 DQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSF----------NA 452
Query: 249 KQVA---YETN-----ASYGGVLYVDSL-----SKP-DGPAPTYLDLLRFSLTKIVD 291
K + Y+T G + + + P T +F T I+D
Sbjct: 453 KDIQIPVYDTFDGSDLRVLSGSI-SERIVDCIIRLPVKWETTT-----QFKATHILD 503
Score = 26.8 bits (59), Expect = 6.6
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 15/70 (21%)
Query: 224 HAINQMRSHKIKFI--FSESTNS----DQPAKQVAYETNASYGGVLYVDSLSKPDGPAPT 277
A +Q++ +F E T D+P E + G YV SL +P
Sbjct: 29 IA-SQLQE---QFNKILPEPTEGFAADDEPTTPA--ELVGKFLG--YVSSLVEPSKVG-Q 79
Query: 278 YLDLLRFSLT 287
+ +L LT
Sbjct: 80 FDQVLNLCLT 89
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis
thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A*
1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Length = 590
Score = 32.1 bits (72), Expect = 0.15
Identities = 16/137 (11%), Positives = 46/137 (33%), Gaps = 7/137 (5%)
Query: 70 IQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMS 129
++++DL+L G+ ++ KI+ + I+ + ++ + ++
Sbjct: 276 VEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHID--IDSAEIGKNKTPHVSVCGDVKLA 333
Query: 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLK-----TRIEKVDPEK 184
L +EN + L + + +++ + + ++++ K
Sbjct: 334 LQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLDELTDGK 393
Query: 185 RWFVTSEGCLVYLAEDF 201
T G A F
Sbjct: 394 AIISTGVGQHQMWAAQF 410
>1nw3_A Histone methyltransferase DOT1L; HDOT1, histone lysine
methyltransferase,; HET: SAM; 2.50A {Homo sapiens} SCOP:
c.66.1.31
Length = 416
Score = 31.2 bits (70), Expect = 0.26
Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 69 KIQNADLILCNGLHLEETYMKYFTN----LKKGTKIITVTD 105
+I N +I N +K+G +I++
Sbjct: 231 RIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 271
>3ey5_A Acetyltransferase-like, GNAT family; structural genomics, APC60148,
PSI-2, protein structure initiative; 2.15A {Bacteroides
thetaiotaomicron}
Length = 181
Score = 30.5 bits (68), Expect = 0.47
Identities = 13/125 (10%), Positives = 39/125 (31%), Gaps = 11/125 (8%)
Query: 131 TNAMIYIENIRKALTALDPSNAKK-YELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVT 189
+NAMI + I + D + K EL + + + L+ +++ +
Sbjct: 1 SNAMIRFQPITTS----DVQHYKFMEELLVESFPPEEYRELEHLREYTDRIGNFHNNIIF 56
Query: 190 SEGCLV-----YLAEDFGF-KSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN 243
+ + + ++F + + P + + H ++ + +
Sbjct: 57 DDDLPIGFITYWDFDEFYYVEHFATNPALRNGGYGKRTLEHLCEFLKRPIVLEVERPVEE 116
Query: 244 SDQPA 248
+
Sbjct: 117 MAKRR 121
>3feh_A Centaurin-alpha-1; structural genomics consortium, GAP, GTPase
activation, SGC, cytoplasm, metal-binding, nucleus,
phosphoprotein, polymorphism; 1.90A {Homo sapiens} PDB:
3fm8_C
Length = 386
Score = 28.3 bits (62), Expect = 2.0
Identities = 15/126 (11%), Positives = 32/126 (25%), Gaps = 7/126 (5%)
Query: 119 DSEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIE 178
+ W + L P A +L + ++ + +
Sbjct: 229 EDGKEIVDWFNALR-----AARFHYLQVAFPG-ASDADLVPKLSRNYLKEGYMEKTGPKQ 282
Query: 179 KVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIF 238
KRWF + L+Y + + I S +++ + H
Sbjct: 283 TEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKE-SGYTVLHGFPPSTQGHHWPHGI 341
Query: 239 SESTNS 244
+ T
Sbjct: 342 TIVTPD 347
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 28.3 bits (62), Expect = 2.4
Identities = 9/66 (13%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
Query: 184 KRWFVTSEGCLVYLAEDFGFK---SLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE 240
+RWFV + Y + + L + + ++ F S
Sbjct: 26 ERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKTFEISA 85
Query: 241 STNSDQ 246
S +
Sbjct: 86 SDKKKK 91
>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone
methyltransferase, nucleosome; HET: SAH; 2.20A
{Saccharomyces cerevisiae} SCOP: c.66.1.31
Length = 433
Score = 28.1 bits (62), Expect = 2.4
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 69 KIQNADLILCNGLHLEETYMKYFTN----LKKGTKIIT 102
I D+IL N +E K K G KII+
Sbjct: 320 LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIIS 357
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 28.1 bits (61), Expect = 2.5
Identities = 10/52 (19%), Positives = 13/52 (25%)
Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIK 235
W V + LV+ E W S +R A H
Sbjct: 36 PSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSS 87
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.25A {Corynebacterium glutamicum}
Length = 221
Score = 27.8 bits (61), Expect = 2.8
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 6/48 (12%)
Query: 132 NAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRN------SILPL 173
+ + + T D + + AR+ E IR+ + LPL
Sbjct: 156 GGALVLADALLDGTIADQTRKDRDTQAARDADEYIRSIEGAHVARLPL 203
>3k2o_A Bifunctional arginine demethylase and lysyl- hydroxylase JMJD6;
structural genomics consortium, SGC, alternative
splicing, chromatin regulator; 1.75A {Homo sapiens}
Length = 336
Score = 27.9 bits (61), Expect = 2.8
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 138 ENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVD 181
+ IR+A + P + Y E S + +E+ D
Sbjct: 8 KRIREAKRSARPELKDSLDWTRHNYYESFSLSPAAVADNVERAD 51
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 27.6 bits (60), Expect = 3.8
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKI 234
KRW V S G Y A + + + I S R +R + ++
Sbjct: 25 KRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFEL 75
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural
genomics, PSI, protein structure initiative; 1.85A
{Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Length = 170
Score = 27.6 bits (61), Expect = 3.8
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 191 EGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRH 224
EG + + +FG ++Y W E S M
Sbjct: 64 EGSVEWFDTEFGRDNVYAWAKEQAGEVSHEMFGD 97
>3bb7_A Interpain A; cysteine protease, zymogen activation, bacterial
odontopathogen, hydrolase; 1.50A {Prevotella intermedia}
PDB: 3bba_A
Length = 321
Score = 27.3 bits (60), Expect = 4.3
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 83 LEETYMKYFTNLK-KGTKIITVTDGINPI-GVSEDTSVDSEPNPHAWMSLTNAMIYIENI 140
L++T+ G +I+ D + GVSE V+++ W L I N
Sbjct: 7 LKQTHTYTVFGYTDGGFAVISADDLAPELLGVSESNFVETDNPSFKWW-LKAIDEVITNA 65
Query: 141 RK 142
K
Sbjct: 66 VK 67
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH;
2.30A {Leptospira interrogans}
Length = 239
Score = 27.4 bits (60), Expect = 4.3
Identities = 8/53 (15%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 127 WMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRN------SILPL 173
+ ++ +N+ + D S+ + + R+++E + N S++P+
Sbjct: 169 KLLKPGGLLIADNVLWDGSVADLSHQEPSTVGIRKFNELVYNDSLVDVSLVPI 221
>3cvo_A Methyltransferase-like protein of unknown function; YP_167254.1,
structural genomics, joint center for structural
genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter
pomeroyi dss-3}
Length = 202
Score = 26.9 bits (59), Expect = 4.9
Identities = 4/47 (8%), Positives = 16/47 (34%)
Query: 55 NDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTNLKKGTKII 101
Y + ++ D++L +G + ++ + ++
Sbjct: 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRFRVGCALATAFSITRPVTLL 151
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 117
Score = 27.3 bits (59), Expect = 4.9
Identities = 8/82 (9%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Query: 174 KTRIEKVDPEKRWFVTSEGCLVYL--AEDFGFKSLYLWPINSDSERSPSMMRHAINQMRS 231
+ +K K++ + S +++ +D + Y+ + + + + +
Sbjct: 12 RNNTKKFGWVKKYVIVSSKKILFYDSEQDKEQSNPYMVLDIDKLFHVRPVTQTDVYRADA 71
Query: 232 HKIKFIFSESTNSDQPAKQVAY 253
+I IF ++ +
Sbjct: 72 KEIPRIFQILYANEGISSAKNL 93
>1wpb_A Hypothetical protein YFBU; structural genomics, MCSG, NCS,
regulatory protein, protein structure initiative, PSI;
2.00A {Escherichia coli} SCOP: a.233.1.1
Length = 172
Score = 26.6 bits (59), Expect = 6.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 128 MSLTNAMIYI-ENIRKALTALDPSNAKKYELNAR 160
M +TNA I N K +T LDP+NA++Y
Sbjct: 9 MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQT 42
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold, motor,
ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A
{Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A*
1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 26.9 bits (59), Expect = 6.2
Identities = 24/139 (17%), Positives = 42/139 (30%), Gaps = 23/139 (16%)
Query: 173 LKTRIEKVDPEKRWFVTSEGCLVYLAEDFGF----KSLYLWPINSDSERSPSMMRHAINQ 228
+ I K + + +G L L + FGF S YL D SPS +R +
Sbjct: 37 IIFAILKQHAKSGEDIFGDGVLEILQDGFGFLRSADSSYL-AGPDDIYVSPSQIRRFNLR 95
Query: 229 M-------------RSHKIKFIFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPA 275
+ N D+P + L+ +S + +
Sbjct: 96 TGDTISGKIRPPKEGERYFALLKVNEVNFDKPEN-ARNKILFENLTPLHANSRLRMERGN 154
Query: 276 PTYLDLLRFSLTKIVDTLF 294
+ DL +++D
Sbjct: 155 GSTEDL----TARVLDLAS 169
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 26.8 bits (58), Expect = 6.5
Identities = 9/65 (13%), Positives = 17/65 (26%), Gaps = 2/65 (3%)
Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMR--SHKIKFIFSES 241
RWF L Y + + + + + S + +N F
Sbjct: 36 TRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAK 95
Query: 242 TNSDQ 246
T +
Sbjct: 96 TGVEA 100
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 26.8 bits (58), Expect = 6.6
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN 243
KRW S+ Y D + + I+ +R + K F
Sbjct: 128 KRWCALSKTVFYYYGSDKDKQQKGEFAIDG------YDVRMNNTLRKDGKKDCCFEICAP 181
Query: 244 SDQ 246
+
Sbjct: 182 DKR 184
>2ob4_A Ubiquitin-conjugating enzyme E2-32 kDa complementing; ligase, UBL
conjugation pathway, structural genomics consortium,
SGC; 2.40A {Homo sapiens}
Length = 180
Score = 26.7 bits (58), Expect = 6.8
Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 13/60 (21%)
Query: 120 SEPNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEK 179
+EPN + ++ +++Y + K+ + REY++ IR +L K E+
Sbjct: 128 NEPNTFSPANVDASVMYRKW-------------KESKGKDREYTDIIRKQVLGTKVDAER 174
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum,
structural genomics, PSI-2, protein structure
initiative; 1.85A {Chlorobaculum tepidum}
Length = 117
Score = 26.4 bits (58), Expect = 7.0
Identities = 12/76 (15%), Positives = 28/76 (36%), Gaps = 3/76 (3%)
Query: 34 GDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEETYMKYFTN 93
D+T A + + + + + + I+ L+ + + E +
Sbjct: 19 DDMTFR-AVNTLRNAGAIACEDTRRTSIL--LKHFGIEGKRLVSYHSFNEERAVRQVIEL 75
Query: 94 LKKGTKIITVTDGINP 109
L++G+ + VTD P
Sbjct: 76 LEEGSDVALVTDAGTP 91
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 26.5 bits (57), Expect = 7.6
Identities = 5/71 (7%), Positives = 16/71 (22%), Gaps = 9/71 (12%)
Query: 184 KRWFVTSEGCLVY---------LAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKI 234
W L + ++++ + S
Sbjct: 41 HYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENSIVQAVPEHPKKDFVFCLSNSLGD 100
Query: 235 KFIFSESTNSD 245
F+F ++ ++
Sbjct: 101 AFLFQTTSQTE 111
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural
genomics, PSI-2, protein structure initiative; NMR
{Sulfolobus solfataricus} PDB: 2q00_A
Length = 129
Score = 26.4 bits (58), Expect = 7.7
Identities = 18/80 (22%), Positives = 28/80 (35%)
Query: 130 LTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVT 189
T+A +Y E + L+ D A + A E + K+ LK V + RW
Sbjct: 4 STSAEVYYEEAEEFLSKGDLVQACEKYYKAAEEAIKLLVIENNLKEITNNVKNKGRWKSE 63
Query: 190 SEGCLVYLAEDFGFKSLYLW 209
+ L + LW
Sbjct: 64 NLFKASKLLRSNNTEIPILW 83
>1vgp_A 373AA long hypothetical citrate synthase; open form, transferase;
2.70A {Sulfolobus tokodaii}
Length = 373
Score = 26.3 bits (57), Expect = 8.5
Identities = 16/93 (17%), Positives = 34/93 (36%), Gaps = 8/93 (8%)
Query: 149 PSNAKKYELNAREYSEKIRNSILPLKTRIEKVDP-------EKRWFVTSEGCLVYLAEDF 201
A+ + A+ +EK I L EKV+ K + + +
Sbjct: 261 DPRARILKQYAKLLAEKEGGEIYTLYQIAEKVEEIGIKYLGPKGIYPNVDFFSSIVFYSL 320
Query: 202 GFKSLYLWPINSDSERSPSMMRHAINQMRSHKI 234
GF+ + + + + R + H + ++ +KI
Sbjct: 321 GFEPDFFPAVFASA-RVVGWVAHIMEYIKDNKI 352
>2avd_A Catechol-O-methyltransferase; structural genomics, structural
genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens}
SCOP: c.66.1.1
Length = 229
Score = 26.3 bits (57), Expect = 8.6
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 127 WMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRN------SILPL 173
+ ++ + + L P R +E+IR S+LPL
Sbjct: 167 QLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 219
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1,
S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo
sapiens} PDB: 3mnt_A*
Length = 334
Score = 26.1 bits (57), Expect = 8.8
Identities = 4/21 (19%), Positives = 11/21 (52%)
Query: 180 VDPEKRWFVTSEGCLVYLAED 200
++ + + +E LVY+ +
Sbjct: 187 MNTQLPTLLIAECVLVYMTPE 207
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.317 0.132 0.377
Gapped
Lambda K H
0.267 0.0457 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 2,372,128
Number of extensions: 105781
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 44
Length of query: 294
Length of database: 5,693,230
Length adjustment: 92
Effective length of query: 202
Effective length of database: 3,462,782
Effective search space: 699481964
Effective search space used: 699481964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.0 bits)