RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780537|ref|YP_003064950.1| periplasmic solute binding
protein [Candidatus Liberibacter asiaticus str. psy62]
(294 letters)
>d1xvla1 c.92.2.2 (A:49-327) Mn transporter MntC {Synechocystis sp.
pcc 6803 [TaxId: 1148]}
Length = 279
Score = 190 bits (484), Expect = 1e-49
Identities = 114/274 (41%), Positives = 177/274 (64%), Gaps = 2/274 (0%)
Query: 20 TTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCN 79
T +KK VL++F+++ D+ QN+A D + V ++ G + H Y+ T +D +K Q+ADLIL N
Sbjct: 3 TEEKKKVLTTFTVLADMVQNVAGDKLVVESITRIGAEIHGYEPTPSDIVKAQDADLILYN 62
Query: 80 GLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIEN 139
G++LE + ++ N+K + +T+GI PI +++ +PNPHAWMS NA++Y+EN
Sbjct: 63 GMNLERWFEQFLGNVKD-VPSVVLTEGIEPIPIADGP-YTDKPNPHAWMSPRNALVYVEN 120
Query: 140 IRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAE 199
IR+A LDP NAK Y NA YSE+++ L +E+V +R+ V+ EG YLA
Sbjct: 121 IRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLAR 180
Query: 200 DFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNASY 259
D+G + +Y+WPIN++ + +P ++ I +++++ + IF EST SD+ KQVA T A +
Sbjct: 181 DYGMEEIYMWPINAEQQFTPKQVQTVIEEVKTNNVPTIFCESTVSDKGQKQVAQATGARF 240
Query: 260 GGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
GG LYVDSLS +GP PT+LDLL + I + L
Sbjct: 241 GGNLYVDSLSTEEGPVPTFLDLLEYDARVITNGL 274
>d1psza_ c.92.2.2 (A:) Pneumococcal surface antigen PssA
{Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]}
Length = 286
Score = 182 bits (461), Expect = 4e-47
Identities = 92/282 (32%), Positives = 159/282 (56%), Gaps = 7/282 (2%)
Query: 18 SATTQKKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLIL 77
+ + QK V+++ SII DIT+NIA D + + ++V G D H Y+ D K ADLI
Sbjct: 4 TTSGQKLKVVATNSIIADITKNIAGDKIDLHSIVPIGQDPHEYEPLPEDVKKTSEADLIF 63
Query: 78 CNGLHLEETYMKYFTNL------KKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLT 131
NG++LE +FT L + V+DG++ I + + + +PHAW++L
Sbjct: 64 YNGINLETGGNAWFTKLVENAKKTENKDYFAVSDGVDVIYLEGQ-NEKGKEDPHAWLNLE 122
Query: 132 NAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSE 191
N +I+ +NI K L+A DP+N + YE N +EY++K+ K + K+ EK+ VTSE
Sbjct: 123 NGIIFAKNIAKQLSAKDPNNKEFYEKNLKEYTDKLDKLDKESKDKFNKIPAEKKLIVTSE 182
Query: 192 GCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQV 251
G Y ++ +G S Y+W IN++ E +P ++ + ++R K+ +F ES+ D+P K V
Sbjct: 183 GAFKYFSKAYGVPSAYIWEINTEEEGTPEQIKTLVEKLRQTKVPSLFVESSVDDRPMKTV 242
Query: 252 AYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
+ +TN ++ DS+++ +Y +++++L KI + L
Sbjct: 243 SQDTNIPIYAQIFTDSIAEQGKEGDSYYSMMKYNLDKIAEGL 284
>d1toaa_ c.92.2.2 (A:) Periplasmic zinc binding protein TroA
{Treponema pallidum [TaxId: 160]}
Length = 277
Score = 174 bits (440), Expect = 1e-44
Identities = 66/276 (23%), Positives = 129/276 (46%), Gaps = 7/276 (2%)
Query: 23 KKVVLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLH 82
K +V+++ +I D +NIA+ V + L+ G D H Y T+ D + NADLIL NGLH
Sbjct: 2 KPLVVTTIGMIADAVKNIAQGDVHLKGLMGPGVDPHLYTATAGDVEWLGNADLILYNGLH 61
Query: 83 LEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRK 142
LE + F+ L+ ++ V++ I + ++E +PH W + ++ + +
Sbjct: 62 LETKMGEVFSKLRGSRLVVAVSETIPVS--QRLSLEEAEFDPHVWFDVKLWSYSVKAVYE 119
Query: 143 ALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFG 202
+L L P +++ + Y +++ ++ + + + E+R VT+ Y + +G
Sbjct: 120 SLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYG 179
Query: 203 FKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTNSDQPAKQVAYETNAS---- 258
F+ L +++ SE S M+ + K+ IF ES+ + + + A
Sbjct: 180 FEVKGLQGVSTASEASAHDMQELAAFIAQRKLPAIFIESSIPHKNVEALRDAVQARGHVV 239
Query: 259 -YGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
GG L+ D++ TY+ ++ ++ IV L
Sbjct: 240 QIGGELFSDAMGDAGTSEGTYVGMVTHNIDTIVAAL 275
>d1pq4a_ c.92.2.2 (A:) Periplasmic zinc binding protein ZnuA
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 289
Score = 150 bits (378), Expect = 2e-37
Identities = 58/297 (19%), Positives = 102/297 (34%), Gaps = 42/297 (14%)
Query: 26 VLSSFSIIGDITQNIAKDLVTVTTLVEAGNDSHSYQVTSADAIKIQNADLILCNGLHLEE 85
+ S + I DLV V+ LV ND H+Y+ + A+ + GL E+
Sbjct: 5 ITVSIPPQQYFLEKIGGDLVRVSVLVPGNNDPHTYEPKPQQLAALSEAEAYVLIGLGFEQ 64
Query: 86 TYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSE------------------------ 121
+++ K+I GI P+ + + E
Sbjct: 65 PWLEKLKAANANMKLIDSAQGITPLEMEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAK 124
Query: 122 -----PNPHAWMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTR 176
+PH W+S T I K L LDP N +YE N + ++ L
Sbjct: 125 GALMVADPHIWLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQI 184
Query: 177 IEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKF 236
++ + K Y A D+ + E S ++ I+ + + +
Sbjct: 185 LQPLPQRKFI--VFHPSWAYFARDYNLV--QIPIEVEGQEPSAQELKQLIDTAKENNLTM 240
Query: 237 IFSESTNSDQPAKQVAYETNASYGGVLYVDSLSKPDGPAPTYLDLLRFSLTKIVDTL 293
+F E+ S + ++ +A E A GV +D L+ + L+ KI +
Sbjct: 241 VFGETQFSTKSSEAIAAEIGA---GVELLDPLAA------DWSSNLKAVAQKIANAN 288
>d1u5da1 b.55.1.1 (A:108-213) Src kinase-associated phosphoprotein
SKAP55 (SCAP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 29.8 bits (66), Expect = 0.27
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKI 234
KRW V S G Y A + + + I S R +R + ++
Sbjct: 23 KRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFEL 73
>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Human (Homo sapiens) [TaxId:
9606]}
Length = 328
Score = 28.7 bits (63), Expect = 0.60
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 69 KIQNADLILCNGL----HLEETYMKYFTNLKKGTKIITVTD 105
+I N +I N ++ + F N+K+G +I++
Sbjct: 227 RIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 267
>d1eaza_ b.55.1.1 (A:) Tapp1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 28.6 bits (63), Expect = 0.71
Identities = 8/68 (11%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIK-----FIF 238
+R+F E + Y + + L + P+ + + + +I F
Sbjct: 21 RRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTTSRTFYV 80
Query: 239 SESTNSDQ 246
+ +
Sbjct: 81 QADSPEEM 88
>d2coda1 b.55.1.1 (A:8-109) Centaurin-delta 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 102
Score = 28.3 bits (62), Expect = 0.72
Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 165 KIRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRH 224
K+++ L + K +KRW + Y + S + P+++ S
Sbjct: 1 KVKSGWLDKLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQGDNK 60
Query: 225 AINQMRSHKIKFIFSESTNSDQ 246
++ + + F+F ++
Sbjct: 61 F--EVVTTQRTFVFRVEKEEER 80
>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
chain {Escherichia coli [TaxId: 562]}
Length = 1074
Score = 27.5 bits (60), Expect = 1.2
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 70 IQNADLILCNGLHLEETYMKYFTNL----KKGTKIITVTDGINPIGVSEDTSVDSE---P 122
N+ I+ G ++ +T KGTK + + P +E + P
Sbjct: 243 WYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGTKTVA----VTPD-YAEIAKLCDLWLAP 297
Query: 123 NPHAWMSLTNAMIYI 137
++ AM ++
Sbjct: 298 KQGTDAAMALAMGHV 312
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId:
9606]}
Length = 876
Score = 27.4 bits (59), Expect = 1.6
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 2/92 (2%)
Query: 136 YIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV 195
Y+E + L + K + + +Y ++R S L T I V K ++
Sbjct: 731 YLEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGI--VQGLKGDQENVHPDVM 788
Query: 196 YLAEDFGFKSLYLWPINSDSERSPSMMRHAIN 227
+ F ++ I D + + ++ A
Sbjct: 789 LVQPRVEFILSFIDHIAGDEDHTDGVVACAAG 820
>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1,
COMTD1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 219
Score = 27.1 bits (59), Expect = 1.8
Identities = 10/53 (18%), Positives = 18/53 (33%), Gaps = 6/53 (11%)
Query: 127 WMSLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRN------SILPL 173
+ ++ + + L P R +E+IR S+LPL
Sbjct: 157 QLLRPGGILAVLRVLWRGKVLQPPKGDVAAECVRNLNERIRRDVRVYISLLPL 209
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId:
9606]}
Length = 111
Score = 26.9 bits (59), Expect = 2.0
Identities = 14/92 (15%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 82 HLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIR 141
+ ++ NL + DG + + E + P + + + N+
Sbjct: 20 QFSKFGKQHIENLFSDLQ-----DGRRLLDLLEGLTGQKLPKEKG----STRVHALNNVN 70
Query: 142 KALTALDPSNAKKYELNAREYSEKIRNSILPL 173
KAL L +N + + + + L L
Sbjct: 71 KALRVLQNNNVDLVNIGSTDIVDGNHKLTLGL 102
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein
BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 157
Score = 26.6 bits (58), Expect = 2.2
Identities = 11/88 (12%), Positives = 30/88 (34%), Gaps = 1/88 (1%)
Query: 93 NLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWMSLTNAMIYIENIRKALTALDPSNA 152
L++ + + + S + +IE++ + ALD
Sbjct: 60 MLQRNNNVCITFSLGHKLVYQHKQVACSYSMRSESAMCRGKVEFIEDMEEKRHALD-IIM 118
Query: 153 KKYELNAREYSEKIRNSILPLKTRIEKV 180
+ Y + YS+ ++ K ++++
Sbjct: 119 RHYTKDQFSYSDPAVRNVKVWKVPVDQM 146
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone
methyltransferase Dot1l {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 406
Score = 27.0 bits (59), Expect = 2.3
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 69 KIQNADLILCNGLH----LEETYMKYFTNLKKGTKIITVTD 105
I D+IL N L + K K G KII++
Sbjct: 294 LIPQCDVILVNNFLFDEDLNKKVEKILQTAKVGCKIISLKS 334
>d1faoa_ b.55.1.1 (A:) Dual adaptor of phosphotyrosine and
3-phosphoinositides DAPP1/PHISH {Human (Homo sapiens)
[TaxId: 9606]}
Length = 100
Score = 26.6 bits (58), Expect = 2.5
Identities = 7/61 (11%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 184 KRWFVTSEGCLVYLAEDFGFK---SLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSE 240
RWF L Y + + L L ++ + + + ++ ++
Sbjct: 22 TRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTFYLCAK 81
Query: 241 S 241
+
Sbjct: 82 T 82
>d1wpba_ a.233.1.1 (A:) Hypothetical protein YfbU {Escherichia coli
[TaxId: 562]}
Length = 168
Score = 26.3 bits (58), Expect = 3.4
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 128 MSLTNAMIYI-ENIRKALTALDPSNAKKYELNAR 160
M +TNA I N K +T LDP+NA++Y
Sbjct: 5 MEMTNAQRLILSNQYKMMTMLDPANAERYRRLQT 38
>d1u5ea1 b.55.1.1 (A:14-222) Src-associated adaptor protein Skap2
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 209
Score = 26.1 bits (56), Expect = 3.6
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN 243
KRW S+ Y D + + I+ +R + K F
Sbjct: 126 KRWCALSKTVFYYYGSDKDKQQKGEFAID------GYDVRMNNTLRKDGKKDCCFEICAP 179
Query: 244 SDQ 246
+
Sbjct: 180 DKR 182
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640
{Mycobacterium leprae [TaxId: 1769]}
Length = 297
Score = 25.5 bits (55), Expect = 5.9
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 181 DPEKRWFVTSEGCLVYLAED 200
DP R +EG L+YL
Sbjct: 163 DPSARTAWLAEGLLMYLPAT 182
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 25.3 bits (54), Expect = 6.5
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 211 INSDSERSPSMMRHAINQMRSHKIKFIFS 239
++ ++ R PS A+ + +K +
Sbjct: 13 VSFETHRIPSSTIEALEAAHAKGLKIFIA 41
>d2qaln1 g.39.1.7 (N:1-100) Ribosomal protein S14 {Escherichia coli
[TaxId: 562]}
Length = 100
Score = 25.2 bits (55), Expect = 6.5
Identities = 11/46 (23%), Positives = 14/46 (30%), Gaps = 7/46 (15%)
Query: 133 AMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPLKTRIE 178
+M E R AL A KY E I + + R
Sbjct: 4 SMKAREVKRVAL-------ADKYFAKRAELKAIISDVNASDEDRWN 42
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 500
Score = 25.3 bits (55), Expect = 6.6
Identities = 12/105 (11%), Positives = 34/105 (32%), Gaps = 8/105 (7%)
Query: 69 KIQNADLILCNGLHLEETYMKYFTNLKKGTKIITVTDGINPIGVSEDTSVDSEPNPHAWM 128
+ + + N L ++ F +++ G ++ V + +SV+ +
Sbjct: 270 RDERCYRLWINSLGIDSYVNNVFEDVRNGWILLEV------LDKVSPSSVNWKHASKP-- 321
Query: 129 SLTNAMIYIENIRKALTALDPSNAKKYELNAREYSEKIRNSILPL 173
+ +EN + + + + + + IL L
Sbjct: 322 PIKMPFRKVENCNQVIKIGKQLKFSLVNVAGNDIVQGNKKLILGL 366
>d2fjla1 b.55.1.1 (A:1-37,A:87-150) Phosphoinositide phospholipase
C, PLC-gamma-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 101
Score = 25.4 bits (54), Expect = 6.8
Identities = 9/65 (13%), Positives = 21/65 (32%), Gaps = 1/65 (1%)
Query: 166 IRNSILPLKTRIEKVDPEKRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHA 225
I+N IL L+ + +FV + + Y E + + + ++
Sbjct: 2 IKNGILYLEDPVNHE-WYPHYFVLTSSKIYYSEETSSDLLRGVLDVPACQIAIRPEGKNN 60
Query: 226 INQMR 230
+
Sbjct: 61 RLFVF 65
>d1dpea_ c.94.1.1 (A:) Dipeptide-binding protein {Escherichia coli
[TaxId: 562]}
Length = 507
Score = 25.1 bits (53), Expect = 7.0
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 12/62 (19%)
Query: 118 VDSEP---NPHAWMSLTNAMIYIENIRKALTALDPSN-------AKKYELN--AREYSEK 165
+ P NP ++S T + L A+K+E++ + Y+
Sbjct: 7 SEGSPEGFNPQLFISGTTYDASSVPLYNRLVEFKIGTTEVIPGLAEKWEVSEDGKTYTFH 66
Query: 166 IR 167
+R
Sbjct: 67 LR 68
>d1v89a_ b.55.1.1 (A:) Rho-GTPase-activating protein 25 (KIAA0053)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 25.3 bits (54), Expect = 7.2
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 7/67 (10%)
Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINSDSERSPSMMRHAINQMRSHKIKFIFSESTN 243
+R+FV L Y ++ K + + + + KF+F
Sbjct: 26 QRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPE-------EAGKFVFEIIPA 78
Query: 244 SDQPAKQ 250
S +
Sbjct: 79 SWDQNRM 85
>d1fhea2 c.47.1.5 (A:1-80) Class alpha GST {Fasciola hepatica
[TaxId: 6192]}
Length = 80
Score = 25.0 bits (54), Expect = 7.2
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 138 ENIRKALTALD-PSNAKKYELNARE-YSEKIRNSILPLKTRIEKVDPEKRWFVTSEGCLV 195
+ +R L L Y + RE + + N L L +D + S +
Sbjct: 14 QPVRLFLEYLGEEYEEHLYGRDDREKWMSEKFNMGLDLPNLPYYIDDKC-KLTQSVAIMR 72
Query: 196 YLAEDFG 202
Y+A+ G
Sbjct: 73 YIADKHG 79
>d1fgya_ b.55.1.1 (A:) Grp1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 127
Score = 24.8 bits (53), Expect = 8.5
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 184 KRWFVTSEGCLVYLAEDFGFKSLYLWPINS 213
+RWF+ ++ CL Y + + P+ +
Sbjct: 23 RRWFILTDNCLYYFEYTTDKEPRGIIPLEN 52
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.377
Gapped
Lambda K H
0.267 0.0498 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,029,610
Number of extensions: 46480
Number of successful extensions: 169
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 29
Length of query: 294
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 209
Effective length of database: 1,240,546
Effective search space: 259274114
Effective search space used: 259274114
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.4 bits)