RPSBLAST alignment for GI: 254780538 and conserved domain: TIGR02857

>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

 Score =  111 bits (280), Expect = 2e-25
 Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 30/224 (13%)

Query: 12  LELKDISVTYPN-GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
           LE   +SV YP     AL  V+  +P     AL+G +GAGKSTL   ++G +   +GSI+
Sbjct: 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380

Query: 71  IFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI 127
           +    + +A        IA++PQ     + F   + + + +        R  AS+ +   
Sbjct: 381 VNGVPLADADADSWRDQIAWVPQHP---FLFAGTIAENIRLA-------RPDASDAE--- 427

Query: 128 VTEALENVGMSSMRQ-------RQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFA 176
           +  ALE  G+              IGE    LS GQ +R+ LARA  + + ++++DEP A
Sbjct: 428 IRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTA 487

Query: 177 AIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
            +D +TE  +   L++L     ++LV TH +       DR + L
Sbjct: 488 HLDAETEALVTEALRALAQGRTVLLV-THRLALAER-ADRIVVL 529