RPSBLAST alignment for GI: 254780538 and conserved domain: cd03237
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.. Length = 246
Score = 63.4 bits (154), Expect = 7e-11
Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 28/189 (14%)
Query: 35 IPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESI 94
I E+ + ++G NG GK+T + + G++ D+G I I TV +Y PQ
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV---------SYKPQYIKA 72
Query: 95 DWTFPILVEDVVM---MGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIG 151
D + V D++ Y H ++ TE + + + + R++ ELS G
Sbjct: 73 D--YEGTVRDLLSSITKDFYTHPYFK-----------TEIAKPLQIEQILDREVPELSGG 119
Query: 152 QQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI--FLLKSLLNEDIMILVSTHNINS 209
+ +RV +A L++ + + ++DEP A +D + +R M + + N + V H+I
Sbjct: 120 ELQRVAIAACLSKDADIYLLDEPSAYLDVE-QRLMASKVIRRFAENNEKTAFVVEHDIIM 178
Query: 210 IPSFCDRTI 218
I DR I
Sbjct: 179 IDYLADRLI 187