RPSBLAST alignment for GI: 254780538 and conserved domain: cd03238
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 176
Score = 44.9 bits (106), Expect = 3e-05
Identities = 35/197 (17%), Positives = 80/197 (40%), Gaps = 48/197 (24%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
L+++++ IP N + + G++G+GKSTL + + L + L
Sbjct: 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG-------------LYASGKARLISFLPK 56
Query: 87 YIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMR-QRQI 145
+ ++ + + + L +VG+ + +++
Sbjct: 57 FSRNK-------------LIFIDQLQ------------------FLIDVGLGYLTLGQKL 85
Query: 146 GELSIGQQKRVFLARALAQKSQ--VIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVS 203
LS G+ +RV LA L + + I+DEP + + +++ ++K L++ +++
Sbjct: 86 STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI 145
Query: 204 THNINSIPSFCDRTIFL 220
HN++ + S D I
Sbjct: 146 EHNLDVL-SSADWIIDF 161