RPSBLAST alignment for GI: 254780538 and conserved domain: cd03240

>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.. Length = 204
 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 14/169 (8%)

Query: 40  ITALIGLNGAGKSTLFQAI-MGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTF 98
           +T ++G NGAGK+T+ +A+   L         +   +   A    LI        +   F
Sbjct: 24  LTLIVGQNGAGKTTIIEALKYALTG------ELPPNSKGGAHDPKLIREGEVRAQVKLAF 77

Query: 99  PILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFL 158
                    + R   +    V   +        L+  G  S  ++ +  L I    R+ L
Sbjct: 78  ENANGKKYTITRSLAI-LENVIFCHQGESNWPLLDMRGRCSGGEKVLASLII----RLAL 132

Query: 159 ARALAQKSQVIIMDEPFAAID-FKTEREMIFLLKSLLNEDIM-ILVSTH 205
           A        ++ +DEP   +D    E  +  +++   ++    ++V TH
Sbjct: 133 AETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITH 181