RPSBLAST alignment for GI: 254780538 and conserved domain: cd03271

>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.. Length = 261
 Score = 42.1 bits (99), Expect = 2e-04
 Identities = 48/226 (21%), Positives = 101/226 (44%), Gaps = 44/226 (19%)

Query: 28  LEDVNLFIPENTITALIGLNGAGKST-----LFQAIMGLIPLDKGSISIFNQTVENALKA 82
           L+++++ IP   +T + G++G+GKS+     L+ A+   + L K         +E     
Sbjct: 11  LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNH-DRIEGLEHI 69

Query: 83  DLIAYIPQT------ESIDWTFPILVEDV----------------VMMGRYKHMNWRRVA 120
           D +  I Q+       S   T+  + +++                 +  RYK  +   V 
Sbjct: 70  DKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVL 129

Query: 121 S----------NNDYRIVT--EALENVGMSSMRQRQIG-ELSIGQQKRVFLARALAQKSQ 167
                       N  +I    + L +VG+  ++  Q    LS G+ +R+ LA+ L+++S 
Sbjct: 130 DMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRST 189

Query: 168 ---VIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSI 210
              + I+DEP   + F   ++++ +L+ L+++   ++V  HN++ I
Sbjct: 190 GKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVI 235