RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide
binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str.
psy62]
(280 letters)
>gnl|CDD|31318 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 273 bits (699), Expect = 4e-74
Identities = 104/236 (44%), Positives = 153/236 (64%), Gaps = 1/236 (0%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E+++++V+Y N LED++L + + ITALIG NGAGKSTL +AI+GL+ G I I
Sbjct: 5 IEVENLTVSYGNRP-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEA 131
F + V K I Y+PQ S+D +FPI V+DVV++GRY W R + D V EA
Sbjct: 64 FGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEA 123
Query: 132 LENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLK 191
LE VGM +R RQIGELS GQ++RV LARALAQ ++++DEPF +D ++E+ LLK
Sbjct: 124 LERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLK 183
Query: 192 SLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQKTFGAQV 247
L E +L+ TH++ + ++ DR I L + ++ASG ++ E+N++K FG +
Sbjct: 184 ELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPEEVLTEENLEKAFGGSL 239
>gnl|CDD|72994 cd03235, ABC_Metallic_Cations, ABC component of the metal-type
transporters. This family includes transporters
involved in the uptake of various metallic cations such
as iron, manganese, and zinc. The ATPases of this group
of transporters are very similar to members of
iron-siderophore uptake family suggesting that they
share a common ancestor. The best characterized
metal-type ABC transporters are the YfeABCD system of Y.
pestis, the SitABCD system of Salmonella enterica
serovar Typhimurium, and the SitABCD transporter of
Shigella flexneri. Moreover other uncharacterized
homologs of these metal-type transporters are mainly
found in pathogens like Haemophilus or enteroinvasive E.
coli isolates..
Length = 213
Score = 256 bits (657), Expect = 3e-69
Identities = 101/216 (46%), Positives = 139/216 (64%), Gaps = 3/216 (1%)
Query: 13 ELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIF 72
E++D++V+Y G+ LEDV+ + A++G NGAGKSTL +AI+GL+ GSI +F
Sbjct: 1 EVEDLTVSY-GGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVF 59
Query: 73 NQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEAL 132
+ +E K I Y+PQ SID FPI V DVV+MG Y H R S D V EAL
Sbjct: 60 GKPLEKERK--RIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEAL 117
Query: 133 ENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKS 192
E VG+S + RQIGELS GQQ+RV LARAL Q ++++DEPFA +D KT+ ++ LL+
Sbjct: 118 ERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRE 177
Query: 193 LLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASG 228
L E + ILV TH++ + + DR + L +TV+ASG
Sbjct: 178 LRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVASG 213
>gnl|CDD|31317 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 202 bits (516), Expect = 7e-53
Identities = 77/238 (32%), Positives = 141/238 (59%), Gaps = 8/238 (3%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE++++S Y G L+D++ IP+ IT ++G NG+GKSTL + + GL+ G + +
Sbjct: 3 LEVENLSFGY-GGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLL 61
Query: 72 FNQTVEN---ALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
+ + + A +AY+PQ+ S F + V ++V++GRY H+ S D IV
Sbjct: 62 DGKDIASLSPKELAKKLAYVPQSPSAP--FGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
EALE +G+ + R + ELS G+++RV +ARALAQ++ ++++DEP + +D + E++
Sbjct: 120 EEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLE 179
Query: 189 LLKSLLNEDIM-ILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTFG 244
LL+ L E + +++ H++N + D I LK ++A G ++ E+N+++ +G
Sbjct: 180 LLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYG 237
>gnl|CDD|73015 cd03256, ABC_PhnC_transporter, ABC-type phosphate/phosphonate
transport system. Phosphonates are a class of
organophosphorus compounds characterized by a chemically
stable carbon-to-phosphorus (C-P) bond. Phosphonates
are widespread among naturally occurring compounds in
all kingdoms of wildlife, but only procaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 241
Score = 154 bits (392), Expect = 2e-38
Identities = 74/241 (30%), Positives = 124/241 (51%), Gaps = 9/241 (3%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E++++S TYPNG AL+DV+L I ALIG +GAGKSTL + + GL+ GS+ I
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPIL----VEDVVMMGRYKHMNWRRVASN----N 123
+ L Q I F ++ V + V+ GR + R
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120
Query: 124 DYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
+ + ALE VG+ ++ +LS GQQ+RV +ARAL Q+ ++I+ DEP A++D +
Sbjct: 121 EKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASS 180
Query: 184 REMIFLLKSLLNED-IMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQKT 242
R+++ LLK + E+ I ++VS H ++ + DR + LK + ++ + +
Sbjct: 181 RQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTDEVLDEI 240
Query: 243 F 243
+
Sbjct: 241 Y 241
>gnl|CDD|31326 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 150 bits (381), Expect = 3e-37
Identities = 63/267 (23%), Positives = 117/267 (43%), Gaps = 10/267 (3%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E+++++ Y AL+ V+ + I L+G NGAGK+TL + + GL+ G I +
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 72 FNQTVENALKA--DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVT 129
V I Y+PQ S+ + E++ R ++ +
Sbjct: 65 LGYDVVKEPAKVRRRIGYVPQEPSLYPELTVR-ENLEFFARL-----YGLSKEEAEERIE 118
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
E LE G+ +++ LS G ++R+ +A AL +++I+DEP + +D ++ RE+ L
Sbjct: 119 ELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWEL 178
Query: 190 LKSLLNEDIM-ILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTFGAQV 247
L+ L E + IL+STH + CDR I L ++A G ++ + + +
Sbjct: 179 LRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEP 238
Query: 248 SPQSSILNESNIQTTFKAEVYPQINST 274
++ E +I
Sbjct: 239 ERLELAELLEGLKLVKGEEELAEILEA 265
>gnl|CDD|72973 cd03214, ABC_Iron-Siderophores_B12_Hemin, ABC transporters,
involved in the uptake of siderophores, heme, and
vitamin B12, are widely conserved in bacteria and
archaea. Only very few species lack representatives of
the siderophore family transporters. The E. coli BtuCD
protein is an ABC transporter mediating vitamin B12
uptake. The two ATP-binding cassettes (BtuD) are in
close contact with each other, as are the two
membrane-spanning subunits (BtuC); this arrangement is
distinct from that observed for the E. coli lipid
flippase MsbA. The BtuC subunits provide 20
transmembrane helices grouped around a translocation
pathway that is closed to the cytoplasm by a gate
region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters..
Length = 180
Score = 150 bits (382), Expect = 3e-37
Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 46/221 (20%)
Query: 13 ELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIF 72
E++++SV Y G L+D++L I I ++G NGAGKSTL + + GL+ G I +
Sbjct: 1 EVENLSVGY-GGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLD 59
Query: 73 NQTVEN---ALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVT 129
+ + + A IAY+PQ
Sbjct: 60 GKDLASLSPKELARKIAYVPQ--------------------------------------- 80
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
ALE +G++ + R ELS G+++RV LARALAQ+ ++++DEP + +D + E++ L
Sbjct: 81 -ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139
Query: 190 LKSLLNE-DIMILVSTHNINSIPSFCDRTIFLK-KTVLASG 228
L+ L E +++ H++N + DR I LK ++A G
Sbjct: 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|72984 cd03225, ABC_cobalt_CbiO_domain1, Domain I of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. This ABC transport system of the CbiMNQO family
is involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most of
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 211
Score = 145 bits (367), Expect = 2e-35
Identities = 68/214 (31%), Positives = 111/214 (51%), Gaps = 9/214 (4%)
Query: 13 ELKDISVTYPNGY-CALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
ELK++S +YP+G AL+D++L I + ++G NG+GKSTL + + GL+ G + +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 72 FNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
+ + +L + + Q D F VE+ V G + + V
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQ-NPDDQFFGPTVEEEVAFG----LENLGLPEEEIEERV 115
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
EALE VG+ +R R LS GQ++RV +A LA ++++DEP A +D RE++
Sbjct: 116 EEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLE 175
Query: 189 LLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
LLK L E I++ TH+++ + DR I L+
Sbjct: 176 LLKKLKAEGKTIIIVTHDLDLLLELADRVIVLED 209
>gnl|CDD|31319 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 145 bits (366), Expect = 2e-35
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 11/231 (4%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E +++S YP AL+DV+L I + LIG NG+GKSTL + + GL+ G + +
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 72 FNQTVENALK----ADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI 127
+ + + Q P + ++V + +
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIE-----ER 118
Query: 128 VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
V EALE VG+ + R LS GQ++RV +A LA +++++DEP A +D K RE++
Sbjct: 119 VAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELL 178
Query: 188 FLLKSL-LNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNE 236
LLK L I++ TH++ + + DR + L +LA G ++IFN+
Sbjct: 179 ELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229
>gnl|CDD|33436 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 140 bits (354), Expect = 5e-34
Identities = 76/248 (30%), Positives = 132/248 (53%), Gaps = 11/248 (4%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E+K++S TYP G+ AL+DVNL I + + A+IG +GAGKSTL +++ GL+ G I
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDV-----VMMGRYKHMNWRRVA----SN 122
+ +L I F LV + V++GR + + R S
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFN-LVPRLSVLENVLLGRLGYTSTWRSLFGLFSK 122
Query: 123 NDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
D +ALE VG+ ++ LS GQQ+RV +ARAL Q+ ++I+ DEP A++D ++
Sbjct: 123 EDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPES 182
Query: 183 EREMIFLLKSLLNED-IMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQK 241
++++ +LK + ED I ++V+ H ++ + DR I LK + + ++ + +
Sbjct: 183 AKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTDEALDE 242
Query: 242 TFGAQVSP 249
+G ++S
Sbjct: 243 IYGNEISE 250
>gnl|CDD|72978 cd03219, ABC_Mj1267_LivG_branched, The Mj1267/LivG ABC transporter
subfamily is involved in the transport of the
hydrophobic amino acids leucine, isoleucine and valine.
MJ1267 is a branched-chain amino acid transporter with
29% similarity to both the LivF and LivG components of
the E. coli branched-chain amino acid transporter.
MJ1267 contains an insertion from residues 114 to 123
characteristic of LivG (Leucine-Isoleucine-Valine)
homologs. The branched-chain amino acid transporter
from E. coli comprises a heterodimer of ABCs (LivF and
LivG), a heterodimer of six-helix TM domains (LivM and
LivH), and one of two alternative soluble periplasmic
substrate binding proteins (LivK or LivJ)..
Length = 236
Score = 139 bits (353), Expect = 7e-34
Identities = 75/234 (32%), Positives = 120/234 (51%), Gaps = 12/234 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE++ ++ + G AL+DV+ + I LIG NGAGK+TLF I G + GS+ +
Sbjct: 1 LEVRGLTKRF-GGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSV-L 58
Query: 72 FNQTVENALKADLIA--YIPQTESIDWTFPIL-VEDVVMMGRYKH-----MNWRRVASNN 123
F+ L IA I +T I FP L V + VM+ + R
Sbjct: 59 FDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREER 118
Query: 124 DYR-IVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
+ R E LE VG++ + R GELS GQQ+R+ +ARALA +++++DEP A ++ +
Sbjct: 119 EARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEE 178
Query: 183 EREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFN 235
E+ L++ L I +L+ H+++ + S DR L + V+A G ++ N
Sbjct: 179 TEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232
>gnl|CDD|73052 cd03293, ABC_NrtD_SsuB_transporters, NrtD and SsuB are the
ATP-binding subunits of the bacterial ABC-type nitrate
and sulfonate transport systems, respectively. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 220
Score = 137 bits (346), Expect = 4e-33
Identities = 69/216 (31%), Positives = 106/216 (49%), Gaps = 14/216 (6%)
Query: 12 LELKDISVTYPNG---YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
LE++++S TY G ALED++L + E AL+G +G GKSTL + I GL G
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 69 ISIFNQTVENALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRI 127
+ + + V Y+ Q +++ P L V D V +G + + V
Sbjct: 61 VLVDGEPVTGPGPD--RGYVFQQDAL---LPWLTVLDNVALG----LELQGVPKAEARER 111
Query: 128 VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
E LE VG+S +LS G ++RV LARALA V+++DEPF+A+D T ++
Sbjct: 112 AEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ 171
Query: 188 FLLKSLLNEDIM-ILVSTHNINSIPSFCDRTIFLKK 222
L + E +L+ TH+I+ DR + L
Sbjct: 172 EELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
>gnl|CDD|34201 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 135 bits (342), Expect = 1e-32
Identities = 74/246 (30%), Positives = 126/246 (51%), Gaps = 15/246 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ +++S + G L+ V+L + + A++G NGAGKSTL +A+ G + D G +++
Sbjct: 2 IRAENLSYSL-AGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTL 60
Query: 72 FNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
+ + +L A +PQ S+ FP V++VV MGR H + R D RI
Sbjct: 61 NGVPLNSWPPEELARHRAVLPQNSSL--AFPFTVQEVVQMGRIPHRSGRE--PEEDERIA 116
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQ------VIIMDEPFAAIDFKT 182
+AL +S + R LS G+Q+RV LAR LAQ + +DEP +A+D
Sbjct: 117 AQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAH 176
Query: 183 EREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQK 241
+ + L + L E +L H++N + DR + L + V+ASG D+ ++ +++
Sbjct: 177 QHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLER 236
Query: 242 TFGAQV 247
+GA +
Sbjct: 237 VYGADI 242
>gnl|CDD|73018 cd03259, ABC_Carb_Solutes_like, ABC Carbohydrate and Solute
Transporters-like subgroup. This family is comprised of
proteins involved in the transport of apparently
unrelated solutes and proteins specific for di- and
oligosaccharides and polyols. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 213
Score = 134 bits (338), Expect = 3e-32
Identities = 73/218 (33%), Positives = 108/218 (49%), Gaps = 11/218 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LELK +S TY + AL+D++L + AL+G +G GK+TL + I GL D G I I
Sbjct: 1 LELKGLSKTYGSVR-ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILI 59
Query: 72 FNQTVENALKADL-IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVT 129
+ V I + Q ++ FP L V + + G + R V V
Sbjct: 60 DGRDVTGVPPERRNIGMVFQDYAL---FPHLTVAENIAFG----LKLRGVPKAEIRARVR 112
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
E LE VG+ + R ELS GQQ+RV LARALA++ ++++DEP +A+D K E+
Sbjct: 113 ELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREE 172
Query: 190 LKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKKTVLA 226
LK L E I + TH+ + DR + + +
Sbjct: 173 LKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIV 210
>gnl|CDD|31313 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 133 bits (336), Expect = 6e-32
Identities = 65/213 (30%), Positives = 108/213 (50%), Gaps = 12/213 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE++ +S ++ G LED+NL + + A++G +G GKSTL + I GL G + +
Sbjct: 4 LEIEGVSKSFG-GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLL 62
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVTE 130
+ V D I Y+ Q +++ P L V D V +G + R + E
Sbjct: 63 DGRPV-TGPGPD-IGYVFQEDAL---LPWLTVLDNVALG----LELRGKSKAEARERAKE 113
Query: 131 ALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLL 190
LE VG++ + +LS G ++RV +ARALA + +++++DEPF A+D T E+ L
Sbjct: 114 LLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDEL 173
Query: 191 KSLLNED-IMILVSTHNINSIPSFCDRTIFLKK 222
L E +L+ TH+++ DR + L
Sbjct: 174 LRLWEETRKTVLLVTHDVDEAVYLADRVVVLSN 206
>gnl|CDD|34235 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 132 bits (334), Expect = 9e-32
Identities = 71/237 (29%), Positives = 126/237 (53%), Gaps = 10/237 (4%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ ++++S +Y L+DV+L IP+ IT++IG NGAGKSTL + L+ D G I+I
Sbjct: 2 ITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60
Query: 72 FNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
+ + +L ++ + Q I + V D+V GR+ + R + D RI+
Sbjct: 61 DGLELTSTPSKELAKKLSILKQENHI--NSRLTVRDLVGFGRFPYSQGR--LTKEDRRII 116
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
EA+E + + + R + ELS GQ++R F+A LAQ + +++DEP +D K +++
Sbjct: 117 NEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 189 LLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTF 243
+L+ L +E I+V H+IN + D + LK V+ G +I + + + +
Sbjct: 177 ILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEIY 233
>gnl|CDD|30760 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 131 bits (331), Expect = 2e-31
Identities = 73/237 (30%), Positives = 117/237 (49%), Gaps = 15/237 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE++ +S + G A+ DV+L + I LIG NGAGK+TLF I G G++ I
Sbjct: 5 LEVRGLSKRF-GGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV-I 62
Query: 72 FNQTVENALKADLIAY--IPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRV----ASNND 124
F L IA I +T I FP L V + V +G + + + + +
Sbjct: 63 FRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKE 122
Query: 125 YRIVTE----ALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDF 180
R E LE VG+ + R G LS GQQ+R+ +ARALA + +++++DEP A ++
Sbjct: 123 EREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNP 182
Query: 181 KTEREMIFLLKSL-LNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFN 235
+ E+ L++ L + IL+ H++ + DR + L V+A G ++ N
Sbjct: 183 EETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRN 239
>gnl|CDD|72989 cd03230, ABC_DR_subfamily_A, This family of ATP-binding proteins
belongs to a multisubunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea,
these transporters usually include an ATP-binding
protein and one or two integral membrane proteins.
Eukaryote systems of the ABCA subfamily display ABC
domains that are quite similar to this family. The
ATP-binding domain shows the highest similarity between
all members of the ABC transporter family. ABC
transporters are a subset of nucleotide hydrolases that
contain a signature motif, Q-loop, and H-loop/switch
region, in addition to, the Walker A motif/P-loop and
Walker B motif commonly found in a number of ATP- and
GTP-binding and hydrolyzing proteins..
Length = 173
Score = 128 bits (323), Expect = 2e-30
Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 45/213 (21%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E++++S Y AL+D++L + + I L+G NGAGK+TL + I+GL+ D G I +
Sbjct: 1 IEVRNLSKRYGKKT-ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKV 59
Query: 72 FNQTVENALKA--DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVT 129
+ ++ + I Y+P+ S+ Y+++
Sbjct: 60 LGKDIKKEPEEVKRRIGYLPEEPSL----------------YENLT-------------- 89
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
EN+ +LS G ++R+ LA+AL +++I+DEP + +D ++ RE L
Sbjct: 90 -VRENL-----------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWEL 137
Query: 190 LKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
L+ L E IL+S+H + CDR L
Sbjct: 138 LRELKKEGKTILLSSHILEEAERLCDRVAILNN 170
>gnl|CDD|33633 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 127 bits (321), Expect = 3e-30
Identities = 66/224 (29%), Positives = 112/224 (50%), Gaps = 12/224 (5%)
Query: 7 STKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
K LE++++S ++ + A++D++L I + L+G +G GK+TL + I G
Sbjct: 1 MPKPALEIRNVSKSF-GDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSS 59
Query: 67 GSISIFNQTVEN--ALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNN 123
G I + + + + K I + Q+ ++ FP + VE+ V G + + +
Sbjct: 60 GEILLDGEDITDVPPEKRP-IGMVFQSYAL---FPHMTVEENVAFG--LKVRKKLKKAEI 113
Query: 124 DYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
R V EALE VG+ R+ +LS GQQ+RV LARAL + +V+++DEP +A+D K
Sbjct: 114 KAR-VEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLR 172
Query: 184 REMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKKTVLA 226
+M LK L E I + TH+ + DR + +
Sbjct: 173 EQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIE 216
>gnl|CDD|73014 cd03255, ABC_MJ0796_Lo1CDE_FtsE, This family is comprised of MJ0796
ATP-binding cassette, macrolide-specific ABC-type efflux
carrier (MacAB), and proteins involved in cell division
(FtsE), and release of liporoteins from the cytoplasmic
membrane (LolCDE). They are clustered together
phylogenetically. MacAB is an exporter that confers
resistance to macrolides, while the LolCDE system is not
a transporter at all. An FtsE null mutants showed
filamentous growth and appeared viable on high salt
medium only, indicating a role for FtsE in cell division
and/or salt transport. The LolCDE complex catalyses the
release of lipoproteins from the cytoplasmic membrane
prior to their targeting to the outer membrane..
Length = 218
Score = 126 bits (319), Expect = 5e-30
Identities = 67/222 (30%), Positives = 107/222 (48%), Gaps = 20/222 (9%)
Query: 12 LELKDISVTYPNG---YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
+ELK++S TY G AL+ V+L I + A++G +G+GKSTL + GL G
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 69 ISIFNQTVEN-------ALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVA 120
+ + + A + I ++ Q+ ++ P L + V + + V
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNL---LPDLTALENVELP----LLLAGVP 113
Query: 121 SNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDF 180
E LE VG+ ELS GQQ+RV +ARALA ++I+ DEP +D
Sbjct: 114 KKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173
Query: 181 KTEREMIFLLKSLLNED-IMILVSTHNINSIPSFCDRTIFLK 221
+T +E++ LL+ L E I+V TH+ + + DR I L+
Sbjct: 174 ETGKEVMELLRELNKEAGTTIVVVTHD-PELAEYADRIIELR 214
>gnl|CDD|73023 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 125 bits (315), Expect = 1e-29
Identities = 66/214 (30%), Positives = 110/214 (51%), Gaps = 13/214 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L+L++++ Y AL+ V+L + + L+G NGAGK+TL + + L P G+I I
Sbjct: 1 LQLENLTKRYGKK-RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58
Query: 72 FNQTVENALKA--DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNW-RRVASNNDYRIV 128
Q V + I Y+PQ + F V + + ++ W + + S V
Sbjct: 59 DGQDVLKQPQKLRRRIGYLPQEFGVYPNFT--VREFL-----DYIAWLKGIPSKEVKARV 111
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
E LE V + +++IG LS G ++RV +A+AL ++I+DEP A +D + ER
Sbjct: 112 DEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE-ERIRFR 170
Query: 189 LLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
L S L ED ++++STH + + S C++ L K
Sbjct: 171 NLLSELGEDRIVILSTHIVEDVESLCNQVAVLNK 204
>gnl|CDD|31325 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 124 bits (314), Expect = 2e-29
Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 11/244 (4%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LEL+ IS ++ G AL+ V+L + + AL+G NGAGKSTL + + G+ P D G I I
Sbjct: 9 LELRGISKSFG-GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILI 67
Query: 72 FNQTVENALKADL----IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYR 126
+ V + D IA + Q S+ P L V + + +GR + + R
Sbjct: 68 DGKPVAFSSPRDALAAGIATVHQELSL---VPNLSVAENIFLGREPTRRFGLIDRKAMRR 124
Query: 127 IVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
E L +G+ +G+LSI Q++ V +ARAL+ ++V+I+DEP AA+ K +
Sbjct: 125 RARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERL 184
Query: 187 IFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLK--KTVLASGLTSDIFNEDNIQKTFG 244
L++ L + + I+ +H ++ + DR L+ + V ++ ++ ++ G
Sbjct: 185 FDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSEDELVRLMVG 244
Query: 245 AQVS 248
++
Sbjct: 245 RELE 248
Score = 93.7 bits (233), Expect = 5e-20
Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 13/222 (5%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVEN-----ALKA 82
+ DV+ + I + GL GAG++ L +A+ G P G I + + V A+KA
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 83 DLIAYIP---QTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALE--NVGM 137
IAY+P ++E + I E++ + + + + + + +
Sbjct: 335 -GIAYVPEDRKSEGLVLDMSIA-ENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT 392
Query: 138 SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNED 197
S Q IG LS G Q++V LAR LA +V+I+DEP ID + E+ L++ L E
Sbjct: 393 PSPEQP-IGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEG 451
Query: 198 IMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNI 239
IL+ + + + DR + +++ + L + E+ I
Sbjct: 452 KAILMISSELPELLGLSDRILVMREGRIVGELDREEATEEAI 493
>gnl|CDD|73022 cd03263, ABC_subfamily_A, The ABCA subfamily mediates the transport
of a variety of lipid compounds. Mutations of members
of ABCA subfamily are associated with human genetic
diseases, such as, familial high-density lipoprotein
(HDL) deficiency, neonatal surfactant deficiency,
degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR)
protein transports vitamin A derivatives in the outer
segments of photoreceptor cells, and therefore, performs
a crucial step in the visual cycle. The ABCA genes are
not present in yeast. However, evolutionary studies of
ABCA genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages..
Length = 220
Score = 122 bits (309), Expect = 9e-29
Identities = 53/221 (23%), Positives = 106/221 (47%), Gaps = 11/221 (4%)
Query: 12 LELKDISVTYPNGYC-ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
L++++++ TY G A++D++L + + I L+G NGAGK+T + + G + G+
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 71 IFNQTVENALKA--DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
I ++ KA + Y PQ +++ + E + R K + + V
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVR-EHLRFYARLKGLPKSEIKEE-----V 114
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
L +G++ ++ LS G ++++ LA AL V+++DEP + +D + R +
Sbjct: 115 ELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174
Query: 189 LLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASG 228
L+ + +IL +TH+++ + CDR I + G
Sbjct: 175 LILEVRKGRSIIL-TTHSMDEAEALCDRIAIMSDGKLRCIG 214
>gnl|CDD|33631 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 121 bits (306), Expect = 2e-28
Identities = 63/232 (27%), Positives = 108/232 (46%), Gaps = 18/232 (7%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LELK++ ++ + L+DVNL I + L+G +G GKSTL + I GL G I I
Sbjct: 4 LELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILI 62
Query: 72 FNQTVENALKADL-IAYIPQTESIDWTFPILVEDVVMMGRYKHMNW----RRVASNNDYR 126
+ V + IA + Q ++ +P M Y+++ + R V +
Sbjct: 63 DGRDVTDLPPEKRGIAMVFQNYAL---YP-------HMTVYENIAFGLKLRGVPKAEIDK 112
Query: 127 IVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
V E + +G+ + R+ +LS GQ++RV LARAL +K +V ++DEP + +D K M
Sbjct: 113 RVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172
Query: 187 IFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNE 236
+K L + TH+ + DR + + + G +++
Sbjct: 173 RSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224
>gnl|CDD|72983 cd03224, ABC_TM1139_LivF_branched, LivF (TM1139) is part of the
LIV-I bacterial ABC-type two-component transport system
that imports neutral, branched-chain amino acids. The
E. coli branched-chain amino acid transporter comprises
a heterodimer of ABC transporters (LivF and LivG), a
heterodimer of six-helix TM domains (LivM and LivH), and
one of two alternative soluble periplasmic substrate
binding proteins (LivK or LivJ). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules..
Length = 222
Score = 120 bits (304), Expect = 3e-28
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 19/233 (8%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE+++++ Y L V+L +PE I AL+G NGAGK+TL + IMGL+P GSI
Sbjct: 1 LEVENLNAGY-GKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRF 59
Query: 72 FNQTVENALKADL----IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYR 126
+ + + I Y+P+ I FP L VE+ +++G Y R + R
Sbjct: 60 DGRDITGLPPHERARAGIGYVPEGRRI---FPELTVEENLLLGAY-----ARRRAKRKAR 111
Query: 127 I--VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
+ V E + R++ G LS G+Q+ + +ARAL + +++++DEP + K
Sbjct: 112 LERVYELFPRLK--ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169
Query: 185 EMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNE 236
E+ ++ L +E + IL+ N DR L++ V+ G +++ +
Sbjct: 170 EIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
>gnl|CDD|73016 cd03257, ABC_NikE_OppD_transporters, The ABC transporter subfamily
specific for the transport of dipeptides, oligopeptides
(OppD), and nickel (NikDE). The NikABCDE system of E.
coli belongs to this family and is composed of the
periplasmic binding protein NikA, two integral membrane
components (NikB and NikC), and two ATPase (NikD and
NikE). The NikABCDE transporter is synthesized under
anaerobic conditions to meet the increased demand for
nickel resulting from hydrogenase synthesis. The
molecular mechanism of nickel uptake in many bacteria
and most archaea is not known. Many other members of
this ABC family are also involved in the uptake of
dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF..
Length = 228
Score = 119 bits (301), Expect = 7e-28
Identities = 65/224 (29%), Positives = 108/224 (48%), Gaps = 17/224 (7%)
Query: 12 LELKDISVTYPNGYC---ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
LE+K++SV++P G AL+DV+ I + L+G +G+GKSTL +AI+GL+ GS
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 69 ISIFNQTVENALKADL------IAYIPQ--TESIDWTFPILVEDVVMMGRYKHMNWRRVA 120
I + + + I + Q S++ I + + H +
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTI--GEQIAEPLRIHGKLSKKE 119
Query: 121 SNNDYRIVTEALENVGMSSMR-QRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
+ V L VG+ R ELS GQ++RV +ARALA +++I DEP +A+D
Sbjct: 120 ARK--EAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALD 177
Query: 180 FKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK 222
+ +++ LLK L E + +L TH++ + DR +
Sbjct: 178 VSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYA 221
>gnl|CDD|73020 cd03261, ABC_Org_Solvent_Resistant, ABC (ATP-binding cassette)
transport system involved in resistant to organic
solvents; ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 119 bits (300), Expect = 9e-28
Identities = 66/234 (28%), Positives = 117/234 (50%), Gaps = 12/234 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+EL+ ++ ++ G L+ V+L + I A+IG +G+GKSTL + I+GL+ D G + I
Sbjct: 1 IELRGLTKSF-GGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPIL-----VEDVVMMGRYKHMNWRRVASNNDYR 126
+ + +A+L + + + + L V + V +H R++
Sbjct: 60 DGEDISGLSEAELYR-LRRRMGMLFQSGALFDSLTVFENVAFPLREH---TRLSEEEIRE 115
Query: 127 IVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
IV E LE VG+ ELS G +KRV LARALA ++++ DEP A +D +
Sbjct: 116 IVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVI 175
Query: 187 IFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFL-KKTVLASGLTSDIFNEDN 238
L++SL E + ++ TH++++ + DR L ++A G ++ D+
Sbjct: 176 DDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDD 229
>gnl|CDD|31320 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 118 bits (298), Expect = 1e-27
Identities = 65/243 (26%), Positives = 117/243 (48%), Gaps = 21/243 (8%)
Query: 12 LELKDISVTYPNGY---CALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP----L 64
LE+++++V + A+ DV+ + I ++G +G+GKSTL A+MGL+P +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 65 DKGSISIFNQTV-------ENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWR 117
G + + + + L+ IA I Q + + D + H
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK-- 123
Query: 118 RVASNNDYRIVTEALENVGMS-SMRQRQIG-ELSIGQQKRVFLARALAQKSQVIIMDEPF 175
+ + E LE VG+ R+ + +LS G ++RV +A ALA K +++I DEP
Sbjct: 124 -GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182
Query: 176 AAIDFKTEREMIFLLKSLLNEDIM-ILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDI 233
A+D T+ +++ LLK L E M +L TH++ + DR + + K ++ +G T +I
Sbjct: 183 TALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEI 242
Query: 234 FNE 236
+
Sbjct: 243 LSN 245
Score = 112 bits (281), Expect = 1e-25
Identities = 64/248 (25%), Positives = 112/248 (45%), Gaps = 31/248 (12%)
Query: 12 LELKDISVTYPNG----------YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL 61
L ++++S Y + A++DV+ + E L+G +G+GKSTL + + GL
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 62 IPLDKGSISIFNQTVENALKADL-------IAYIPQTESIDWTFPI---LVEDVVMMGRY 111
+P GSI Q ++ + + S++ + L E + + G
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG 400
Query: 112 KHMNWRRVASNNDYRIVTEALENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVII 170
R V E LE VG+ R ELS GQ++RV +ARALA + +++I
Sbjct: 401 SGAERRA--------RVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLI 452
Query: 171 MDEPFAAIDFKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASG 228
+DEP +A+D + +++ LLK L E + L +H++ + DR + ++ G
Sbjct: 453 LDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512
Query: 229 LTSDIFNE 236
T +F
Sbjct: 513 PTEKVFEN 520
>gnl|CDD|31331 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 118 bits (298), Expect = 1e-27
Identities = 69/226 (30%), Positives = 111/226 (49%), Gaps = 27/226 (11%)
Query: 12 LELKDISVTYPNGYC---ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
+ELK++S Y G AL+DVNL I A++G +G+GKSTL + GL G
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 69 ISIFNQTVEN-------ALKADLIAYIPQTESIDWTFPIL----VEDVVMMGRYKHMNWR 117
+ I + + L+ I ++ Q F +L V + V + +
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQN------FNLLPDLTVLENVEL----PLLIA 111
Query: 118 RVASNNDYRIVTEALENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFA 176
++ R E LE +G+ + +++ ELS GQQ+RV +ARAL ++I+ DEP
Sbjct: 112 GKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTG 171
Query: 177 AIDFKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLK 221
+D KT +E++ LL+ L E I++ TH+ + + DR I LK
Sbjct: 172 NLDSKTAKEVLELLRELNKERGKTIIMVTHD-PELAKYADRVIELK 216
>gnl|CDD|72988 cd03229, ABC_Class3, This class is comprised of all BPD (Binding
Protein Dependent) systems that are largely represented
in archaea and eubacteria and are primarily involved in
scavenging solutes from the environment. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 178
Score = 118 bits (298), Expect = 1e-27
Identities = 70/215 (32%), Positives = 102/215 (47%), Gaps = 45/215 (20%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LELK++S Y L DV+L I I AL+G +G+GKSTL + I GL D GSI I
Sbjct: 1 LELKNVSKRY-GQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILI 59
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMM----GRYKHMNWRRVASNNDYRI 127
+ + DL +P + M+ + H+
Sbjct: 60 DGEDL-----TDLEDELPPLR----------RRIGMVFQDFALFPHLT------------ 92
Query: 128 VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
LEN+ + LS GQQ+RV LARALA V+++DEP +A+D T RE+
Sbjct: 93 ---VLENIALG---------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVR 140
Query: 188 FLLKSLLNED-IMILVSTHNINSIPSFCDRTIFLK 221
LLKSL + I +++ TH+++ DR + L+
Sbjct: 141 ALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLR 175
>gnl|CDD|34593 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 117 bits (294), Expect = 4e-27
Identities = 64/248 (25%), Positives = 118/248 (47%), Gaps = 31/248 (12%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ L+++S YP+G AL D+NL I +TAL+G +GAGKSTL ++G + +G I +
Sbjct: 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRV 380
Query: 72 FNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
+ + I+++ Q + F + + +++ R AS+ + +
Sbjct: 381 NGIDLRDLSPEAWRKQISWVSQNPYL---FAGTIRENILLARPD-------ASDEE---I 427
Query: 129 TEALENVGMSSMRQR------QIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAI 178
AL+ G+ + IGE LS GQ +R+ LARAL + ++++DEP A +
Sbjct: 428 IAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHL 487
Query: 179 DFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDN 238
D +TE+ ++ L+ L + ++++ TH + DR + L L E +
Sbjct: 488 DAETEQIILQALQELAKQKTVLVI-THRLEDAAD-ADRIVVLDNGRLVE---QGTHEELS 542
Query: 239 IQKTFGAQ 246
++ A
Sbjct: 543 EKQGLYAN 550
>gnl|CDD|72987 cd03228, ABCC_MRP_Like, The MRP (Mutidrug Resistance Protein)-like
transporters are involved in drug, peptide, and lipid
export. They belong to the subfamily C of the
ATP-binding cassette (ABC) superfamily of transport
proteins. The ABCC subfamily contains transporters with
a diverse functional spectrum that includes ion
transport, cell surface receptor, and toxin secretion
activities. The MRP-like family, simlar to all ABC
proteins, have a common four-domain core structure
constituted by two membrane-spanning domains, each
composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 171
Score = 115 bits (290), Expect = 1e-26
Identities = 57/215 (26%), Positives = 96/215 (44%), Gaps = 50/215 (23%)
Query: 12 LELKDISVTYPNGY-CALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
+E K++S +YP L+DV+L I A++G +G+GKSTL + ++ L G I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 71 IFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI 127
I + + L IAY+PQ P L +
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQD-------PFLFSGTIR-------------------- 93
Query: 128 VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
EN+ LS GQ++R+ +ARAL + ++I+DE +A+D +TE ++
Sbjct: 94 -----ENI------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALIL 136
Query: 188 FLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
L++L +I++ H +++I DR I L
Sbjct: 137 EALRALAKGKTVIVI-AHRLSTI-RDADRIIVLDD 169
>gnl|CDD|73019 cd03260, ABC_PstB_phosphate_transporter, Phosphate uptake is of
fundamental importance in the cell physiology of
bacteria because phosphate is required as a nutrient.
The Pst system of E. coli comprises four distinct
subunits encoded by the pstS, pstA, pstB, and pstC
genes. The PstS protein is a phosphate-binding protein
located in the periplasmic space. P stA and PstC are
hydrophobic and they form the transmembrane portion of
the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD)..
Length = 227
Score = 115 bits (289), Expect = 2e-26
Identities = 70/237 (29%), Positives = 115/237 (48%), Gaps = 24/237 (10%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPL-----DK 66
+EL+D++V Y AL+D++L IP+ ITALIG +G GKSTL + + L L D+
Sbjct: 1 IELRDLNVYY-GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE 59
Query: 67 GSISIFNQTVENALKADL------IAYIPQTESIDWTFPILVEDVVMMG-RYKHMNWRRV 119
G + + + + L D+ + + Q + FP + D V G R + +
Sbjct: 60 GEVLLDGKDI-YDLDVDVLELRRRVGMVFQKPNP---FPGSIYDNVAYGLRLHGIKLKEE 115
Query: 120 ASNNDYRIVTEALENVGM--SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAA 177
V EAL + + LS GQQ+R+ LARALA + +V+++DEP +A
Sbjct: 116 LD----ERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSA 171
Query: 178 IDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIF 234
+D + ++ L+ L ++ I++ THN+ DRT FL L ++
Sbjct: 172 LDPISTAKIEELIAE-LKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227
>gnl|CDD|31332 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 114 bits (288), Expect = 2e-26
Identities = 72/238 (30%), Positives = 122/238 (51%), Gaps = 12/238 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L ++++ +Y + DV+L + I L+G NGAGK+T F I+GL+ D G I +
Sbjct: 5 LVAENLAKSY-KKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILL 63
Query: 72 FNQTVENA---LKADL-IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYR 126
++ + +A L I Y+PQ SI F L VED +M + A +
Sbjct: 64 DDEDITKLPMHKRARLGIGYLPQEASI---FRKLTVEDNIMAVLEIREKDLKKAERKEE- 119
Query: 127 IVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
+ LE ++ +R + LS G+++RV +ARALA + I++DEPFA +D ++
Sbjct: 120 -LDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDI 178
Query: 187 IFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFNEDNIQKTF 243
++K L + I +L++ HN+ CDR I VLA G +I N +++++ +
Sbjct: 179 QRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVRRVY 236
>gnl|CDD|72985 cd03226, ABC_cobalt_CbiO_domain2, Domain II of the ABC component of
a cobalt transport family found in bacteria, archaea,
and eukaryota. The transition metal cobalt is an
essential component of many enzymes and must be
transported into cells in appropriate amounts when
needed. The CbiMNQO family ABC transport system is
involved in cobalt transport in association with the
cobalamin (vitamin B12) biosynthetic pathways. Most
cobalt (Cbi) transport systems possess a separate CbiN
component, the cobalt-binding periplasmic protein, and
they are encoded by the conserved gene cluster cbiMNQO.
Both the CbiM and CbiQ proteins are integral cytoplasmic
membrane proteins, and the CbiO protein has the linker
peptide and the Walker A and B motifs commonly found in
the ATPase components of the ABC-type transport
systems..
Length = 205
Score = 114 bits (286), Expect = 4e-26
Identities = 55/209 (26%), Positives = 104/209 (49%), Gaps = 9/209 (4%)
Query: 13 ELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIF 72
+++IS +Y G L+D++L + I AL G NGAGK+TL + + GLI GSI +
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 73 NQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEAL 132
+ ++ + I Y+ Q + F V + +++G + L
Sbjct: 61 GKPIKAKERRKSIGYVMQ-DVDYQLFTDSVREELLLGLK--------ELDAGNEQAETVL 111
Query: 133 ENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKS 192
+++ + ++++R LS GQ++R+ +A AL ++I DEP + +D+K + L++
Sbjct: 112 KDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRE 171
Query: 193 LLNEDIMILVSTHNINSIPSFCDRTIFLK 221
L + ++V TH+ + CDR + L
Sbjct: 172 LAAQGKAVIVITHDYEFLAKVCDRVLLLA 200
>gnl|CDD|31330 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 113 bits (285), Expect = 5e-26
Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 18/235 (7%)
Query: 12 LELKDISVTYPNGYC----ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
+EL+++S T+ AL+DV+L IP+ I +IG +GAGKSTL + I L G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 68 SISIFNQTVENALKADL------IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVAS 121
S+ + Q + +A+L I I Q ++ + V + V + V
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT--VFENVAFP----LELAGVPK 115
Query: 122 NNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
+ V E LE VG+S R +LS GQ++RV +ARALA ++++ DE +A+D +
Sbjct: 116 AEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175
Query: 182 TEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIF 234
T + ++ LLK + E + I++ TH + + CDR L + ++ G S++F
Sbjct: 176 TTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230
>gnl|CDD|72977 cd03218, ABC_YhbG, The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium..
Length = 232
Score = 112 bits (283), Expect = 7e-26
Identities = 73/241 (30%), Positives = 121/241 (50%), Gaps = 20/241 (8%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L +++S Y + V+L + + I L+G NGAGK+T F I+GL+ D G I +
Sbjct: 1 LRAENLSKRY-GKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILL 59
Query: 72 FNQTVENA---LKADL-IAYIPQTESIDWTFPIL-VED---VVMMGRYKHMNWRRVASNN 123
Q + +A L I Y+PQ SI F L VE+ V+ R R
Sbjct: 60 DGQDITKLPMHKRARLGIGYLPQEASI---FRKLTVEENILAVLEIRGLSKKERE----- 111
Query: 124 DYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
+ E LE ++ +R+ + LS G+++RV +ARALA + +++DEPFA +D
Sbjct: 112 --EKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAV 169
Query: 184 REMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFNEDNIQKT 242
+++ ++K L + I +L++ HN+ S DR I + VLA G +I + ++K
Sbjct: 170 QDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAANELVRKV 229
Query: 243 F 243
+
Sbjct: 230 Y 230
>gnl|CDD|72971 cd00267, ABC_ATPase, ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 157
Score = 113 bits (283), Expect = 8e-26
Identities = 53/210 (25%), Positives = 87/210 (41%), Gaps = 55/210 (26%)
Query: 13 ELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIF 72
E++++S Y AL++V+L + I AL+G NG+GKSTL +AI GL+ G I I
Sbjct: 1 EIENLSFRYGGRT-ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILID 59
Query: 73 NQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEAL 132
+ + + E
Sbjct: 60 GKDIAK-----------------------------------------------LPLEELR 72
Query: 133 ENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKS 192
+G + +LS GQ++RV LARAL ++++DEP + +D + ++ LL+
Sbjct: 73 RRIGY-------VPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRE 125
Query: 193 LLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
L E +++ TH+ DR I LK
Sbjct: 126 LAEEGRTVIIVTHDPELAELAADRVIVLKD 155
>gnl|CDD|31324 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 112 bits (282), Expect = 1e-25
Identities = 59/237 (24%), Positives = 121/237 (51%), Gaps = 17/237 (7%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E++ ++ ++ L+ V+L +P I A++G +G+GKSTL + I+GL+ DKG I I
Sbjct: 9 IEVRGVTKSF-GDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILI 67
Query: 72 FNQTVENALKADL------IAYIPQTESIDWTFPILVEDV-VMMGRYKHMNWRRVASNND 124
+ + + +L + + Q ++ ++ + E+V + + + +
Sbjct: 68 DGEDIPQLSEEELYEIRKRMGVLFQQGAL-FSSLTVFENVAFPLREHTKLPESLI----- 121
Query: 125 YRIVTEALENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
+V LE VG+ + ELS G +KRV LARA+A +++ +DEP + +D +
Sbjct: 122 RELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISA 181
Query: 184 REMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLK-KTVLASGLTSDIFNEDN 238
+ L++ L + + +++ TH+++S+ + DR L V+A G ++ D+
Sbjct: 182 GVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDD 238
>gnl|CDD|73028 cd03269, ABC_putative_ATPase, This subfamily is involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea,
the typical organization consists of one ABC and one or
two IMs. Eukaryote systems of the ABCA subfamily
display ABC domains strongly similar to this family.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region in addition to the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 210
Score = 112 bits (281), Expect = 1e-25
Identities = 51/211 (24%), Positives = 107/211 (50%), Gaps = 8/211 (3%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE+++++ + AL+D++ + + I L+G NGAGK+T + I+G+I D G +
Sbjct: 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLF 59
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEA 131
+ ++ A + + I Y+P+ + ++ + +V + + K + D
Sbjct: 60 DGKPLDIAAR-NRIGYLPEERGLYPKMKVI-DQLVYLAQLKGLKKEEARRRIDE-----W 112
Query: 132 LENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLK 191
LE + +S +++ ELS G Q++V A+ +++I+DEPF+ +D + +++
Sbjct: 113 LERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIR 172
Query: 192 SLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
L +++STH + + CDR + L K
Sbjct: 173 ELARAGKTVILSTHQMELVEELCDRVLLLNK 203
>gnl|CDD|30759 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 111 bits (280), Expect = 2e-25
Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 17/240 (7%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE++++S Y AL V+L + I AL+G NGAGK+TL + IMGL+ G I
Sbjct: 4 LEVENLSAGY-GKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIF 62
Query: 72 FNQTVENALKADL----IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYR 126
+ + + IAY+P+ I FP L VE+ +++G Y R R
Sbjct: 63 DGEDITGLPPHERARLGIAYVPEGRRI---FPRLTVEENLLLGAY-----ARRDKEAQER 114
Query: 127 IVTEALENV-GMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTERE 185
+ E E + R ++ G LS G+Q+ + +ARAL + +++++DEP + K E
Sbjct: 115 DLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 174
Query: 186 MIFLLKSLLNEDIM-ILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTF 243
+ +K L E M IL+ N DR L+ ++ SG +++ + ++++ +
Sbjct: 175 IFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDVREAY 234
>gnl|CDD|31316 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 111 bits (278), Expect = 3e-25
Identities = 60/230 (26%), Positives = 104/230 (45%), Gaps = 15/230 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ELK++SV NG L D++ + A++G NGAGK+TL + G P G +++
Sbjct: 32 IELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL 90
Query: 72 FNQTVENALKADLIAYIPQT-----ESIDWTFP--ILVEDVVMMGRYKH-MNWRRVASNN 123
+ K + I + + + F V DVV+ G + ++ +
Sbjct: 91 LGRRF---GKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAE 147
Query: 124 DYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
D LE +G + R G LS G+Q+RV +ARAL + +++I+DEP +D
Sbjct: 148 DLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAR 207
Query: 184 REMIFLLKSLL---NEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLT 230
+++ L+ L ++ V+ H P F R + + V+A G
Sbjct: 208 EQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGKL 257
>gnl|CDD|30793 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 110 bits (277), Expect = 4e-25
Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 26/247 (10%)
Query: 12 LELKDISVTYPNGYC---ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
LE+K++SV++P A++ V+ + + I ++G +G+GKS L +AIMGL+P
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 69 IS----IFN--------QTVENALKADLIAYIPQ--TESIDWTFPILVEDVVMMGRYKHM 114
I +F+ + ++ IA I Q S++ I D + H
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTI--GDQIAEVLRLHG 119
Query: 115 NWRRVASNNDYRIVTEALENVGMSSMRQRQI---GELSIGQQKRVFLARALAQKSQVIIM 171
E LE VG+ +R ELS G ++RV +A ALA +++I
Sbjct: 120 KGLSKKE--AKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177
Query: 172 DEPFAAIDFKTEREMIFLLKSLLNEDIM-ILVSTHNINSIPSFCDRTIFLKK-TVLASGL 229
DEP A+D + +++ LLK L E +++ TH++ + DR + ++ G
Sbjct: 178 DEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237
Query: 230 TSDIFNE 236
+IF
Sbjct: 238 VEEIFKN 244
>gnl|CDD|33636 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 110 bits (277), Expect = 4e-25
Identities = 60/218 (27%), Positives = 112/218 (51%), Gaps = 12/218 (5%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
LE++ I+ +P G A +DV+L + + I AL+G NGAGKSTL + + GL D G I
Sbjct: 4 ALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62
Query: 71 IFNQTVE-----NALKADLIAYIPQTESIDWTFPILVEDVVM-MGRYKHMNWRRVASNND 124
+ + V +A++ I + Q + T + E++++ + K R +
Sbjct: 63 VDGKEVRIKSPRDAIRLG-IGMVHQHFMLVPTLTVA-ENIILGLEPSKGGLIDRRQARAR 120
Query: 125 YRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
+ E E G+ ++ +LS+G+Q+RV + +AL + ++++I+DEP A + +
Sbjct: 121 ---IKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEAD 177
Query: 185 EMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
E+ +L+ L E I+ TH + + + DR L++
Sbjct: 178 ELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRR 215
Score = 67.5 bits (165), Expect = 4e-12
Identities = 51/217 (23%), Positives = 93/217 (42%), Gaps = 12/217 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE++D+SV G A++DV+ + I + G+ G G+S L +AI GL G I +
Sbjct: 258 LEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL 317
Query: 72 FNQTVENALKADL-----IAYIPQTESIDWTFPIL-VEDVVMMGRYK---HMNWRRVASN 122
+ V L +AY+P+ L + + +++GR+ +
Sbjct: 318 NGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRR 377
Query: 123 NDYRIVTEALEN--VGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDF 180
+ E +E V S LS G Q+++ LAR LA++ ++I +P +D
Sbjct: 378 AIRKFARELIEEFDVRAPSPDAP-ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDV 436
Query: 181 KTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT 217
+ L L + +L+ + +++ I DR
Sbjct: 437 GAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRI 473
>gnl|CDD|73017 cd03258, ABC_MetN_methionine_transporter, MetN (also known as YusC)
is an ABC-type transporter encoded by metN of the metNPQ
operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate
binding protein. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 233
Score = 109 bits (273), Expect = 1e-24
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 5/229 (2%)
Query: 12 LELKDISVTYPNGYC---ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
+ELK++S + + AL+DV+L +P+ I +IG +GAGKSTL + I GL GS
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 69 ISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
+ + + +L + I F +L V + V V
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
E LE VG+ +LS GQ++RV +ARALA +V++ DE +A+D +T + ++
Sbjct: 122 LELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA 181
Query: 189 LLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFN 235
LL+ + E + I++ TH + + CDR ++K V+ G ++F
Sbjct: 182 LLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
>gnl|CDD|31323 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 108 bits (272), Expect = 1e-24
Identities = 62/231 (26%), Positives = 117/231 (50%), Gaps = 13/231 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E+K++S ++ L+ ++L + + + +IG +G+GKSTL + + GL D GSI++
Sbjct: 3 IEIKNLSKSF-GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITV 61
Query: 72 FNQTVENALKADL----IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYR 126
+ V + + + Q ++ FP L V + V + K + +
Sbjct: 62 DGEDVGDKKDILKLRRKVGMVFQQFNL---FPHLTVLENVTLAPVKVKKLSKAEAR---E 115
Query: 127 IVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
E LE VG++ +LS GQQ+RV +ARALA +V++ DEP +A+D + E+
Sbjct: 116 KALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEV 175
Query: 187 IFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL-KKTVLASGLTSDIFNE 236
+ ++K L E + +++ TH + DR IF+ + ++ G + F+
Sbjct: 176 LDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226
>gnl|CDD|34199 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 107 bits (269), Expect = 3e-24
Identities = 65/246 (26%), Positives = 115/246 (46%), Gaps = 28/246 (11%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE+ D++ +Y + A+ DV+ E IT L+G NGAGK+TL + I L+ D G ++I
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHM----NWRRVASNNDY-R 126
D + + + +L + G Y + N + A N R
Sbjct: 62 -----------DGVDTVRDPSFVRRKIGVLFGE---RGLYARLTARENLKYFARLNGLSR 107
Query: 127 IVTEA-----LENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
+A + + + R++GE S G +++V +ARAL ++++DEP + +D +
Sbjct: 108 KEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIR 167
Query: 182 TEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIF---NED 237
T R+ +K L NE ++ S+H + + + CDR I L K V+ G +
Sbjct: 168 TRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVLR 227
Query: 238 NIQKTF 243
N+++ F
Sbjct: 228 NLEEIF 233
>gnl|CDD|33900 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 107 bits (268), Expect = 4e-24
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 10/223 (4%)
Query: 17 ISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTV 76
++ G AL D N +P ITAL G +G+GK++L I GL D+G I + + +
Sbjct: 4 LNFRQRLGNFAL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVL 62
Query: 77 ENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYK-HMNWRRVASNNDYRIVTEALENV 135
+A K I P+ I + F +D + Y N R + + + +
Sbjct: 63 VDAEKG--IFLPPEKRRIGYVF----QDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALL 116
Query: 136 GMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLN 195
G+ + R G LS G+++RV + RAL ++++MDEP A++D +RE++ L+ L +
Sbjct: 117 GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176
Query: 196 E-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNE 236
E +I IL +H+++ + DR + L+ V ASG +++
Sbjct: 177 EINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGS 219
>gnl|CDD|31322 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 106 bits (266), Expect = 7e-24
Identities = 68/219 (31%), Positives = 107/219 (48%), Gaps = 17/219 (7%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E +++S Y A++DVNL I E LIG +G+GK+T + I LI G I I
Sbjct: 2 IEFENVSKRY-GNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 72 FNQTVENALKADL---IAYIPQTESIDWTFPILV--EDVVMMGRYKHMNWRRVASNNDYR 126
+ + + +L I Y+ Q + FP L E++ + + + R+ +
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGL---FPHLTVAENIATVPKLLGWDKERIK-----K 112
Query: 127 IVTEALENVGM--SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
E L+ VG+ S R ELS GQQ+RV +ARALA +++MDEPF A+D T +
Sbjct: 113 RADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRK 172
Query: 185 EMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK 222
++ +K L E I+ TH+I+ DR +
Sbjct: 173 QLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDA 211
>gnl|CDD|31315 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 105 bits (264), Expect = 1e-23
Identities = 61/217 (28%), Positives = 107/217 (49%), Gaps = 12/217 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ + ++ + + AL+D++L I + AL+G +GAGKSTL + I GL D G I +
Sbjct: 3 IRINNVKKRFGA-FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRL 61
Query: 72 FNQTVENALKADL----IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYR 126
+ + + + + ++ Q ++ FP + V D + G R +
Sbjct: 62 NGRVLFDVSNLAVRDRKVGFVFQHYAL---FPHMTVADNIAFGLKVR--KERPSEAEIRA 116
Query: 127 IVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
V E L V + + R +LS GQ++RV LARALA + +V+++DEPF A+D K +E+
Sbjct: 117 RVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKEL 176
Query: 187 IFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK 222
L+ L + + + TH+ DR + L +
Sbjct: 177 RRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQ 213
>gnl|CDD|31321 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 105 bits (264), Expect = 1e-23
Identities = 57/222 (25%), Positives = 108/222 (48%), Gaps = 19/222 (8%)
Query: 12 LELKDISVTYPNG---YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
L ++++S+ Y G + AL +V+L I ++G +G+GKSTL + + GL GS
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 69 ISIFNQTVENALKADL----IAYIPQ--TESIDWTFPILVEDVVMMGRYKHMNWRRVASN 122
I + + + +A + + Q S++ V ++ R +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT--VGRILSEP------LRPHGLS 115
Query: 123 NDYRIVTEALENVGM-SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
+ + E L+ VG+ S R+ ELS GQ++R+ +ARAL + +++I+DEP +A+D
Sbjct: 116 KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVS 175
Query: 182 TEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK 222
+ +++ LL L E + L +H++ + CDR +
Sbjct: 176 VQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDN 217
>gnl|CDD|33903 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 103 bits (257), Expect = 8e-23
Identities = 56/217 (25%), Positives = 111/217 (51%), Gaps = 18/217 (8%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
LE++ ++ ++ + A+++++ +P I L+G NGAGK+T F+ I+GL+ +G I+
Sbjct: 2 ALEIEGVTKSFGD-KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFP--ILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
+ +K + I Y+P+ + +P + + + + K M +
Sbjct: 61 WNGGPLSQEIK-NRIGYLPEERGL---YPKMTVEDQLKYLAELKGMPKAEIQKKLQA--- 113
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID-FKTE--RE 185
LE + + + ++I ELS G Q+++ A+ + +++I+DEPF+ +D E ++
Sbjct: 114 --WLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKD 171
Query: 186 MIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
IF LK E I+ S+H + + CDR + LKK
Sbjct: 172 AIFELK---EEGATIIFSSHRMEHVEELCDRLLMLKK 205
>gnl|CDD|73027 cd03268, ABC_BcrA_bacitracin_resist, The BcrA subfamily represents
ABC transporters involved in peptide antibiotic
resistance. Bacitracin is a dodecapeptide antibiotic
produced by B. licheniformis and B. subtilis. The
synthesis of bacitracin is non-ribosomally catalyzed by
a multienzyme complex BcrABC. Bacitracin has potent
antibiotic activity against gram-positive bacteria. The
inhibition of peptidoglycan biosynthesis is the best
characterized bacterial effect of bacitracin. The
bacitracin resistance of B. licheniformis is mediated by
the ABC transporter Bcr which is composed of two
identical BcrA ATP-binding subunits and one each of the
integral membrane proteins, BcrB and BcrC. B. subtilis
cells carrying bcr genes on high-copy number plasmids
develop collateral detergent sensitivity, a similar
phenomenon in human cells with overexpressed multi-drug
resistance P-glycoprotein..
Length = 208
Score = 101 bits (254), Expect = 2e-22
Identities = 55/219 (25%), Positives = 106/219 (48%), Gaps = 20/219 (9%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L+ D++ TY L+D++L + + I +G NGAGK+T + I+GLI D G I+
Sbjct: 1 LKTNDLTKTYGKKR-VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITF 59
Query: 72 FNQTVENALKA-----DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYR 126
++ + ++A LI P + + R +++ +
Sbjct: 60 DGKSYQKNIEALRRIGALIEA-----------PGFYPN--LTAR-ENLRLLARLLGIRKK 105
Query: 127 IVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
+ E L+ VG+ ++++ S+G ++R+ +A AL ++I+DEP +D +E+
Sbjct: 106 RIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL 165
Query: 187 IFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVL 225
L+ SL ++ I +L+S+H ++ I DR + K L
Sbjct: 166 RELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKL 204
>gnl|CDD|73059 cd03300, ABC_PotA_N, PotA is an ABC-type transporter and the ATPase
component of the spermidine/putrescine-preferential
uptake system consisting of PotA, -B, -C, and -D. PotA
has two domains with the N-terminal domain containing
the ATPase activity and the residues required for
homodimerization with PotA and heterdimerization with
PotB. ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 232
Score = 101 bits (253), Expect = 2e-22
Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 12/229 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+EL+++S Y G+ AL+ V+L I E L+G +G GK+TL + I G G I +
Sbjct: 1 IELENVSKFY-GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59
Query: 72 FNQTVENALKADL-IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVT 129
+ + N + + Q ++ FP L V + + G + +++ V
Sbjct: 60 DGKDITNLPPHKRPVNTVFQNYAL---FPHLTVFENIAFG----LRLKKLPKAEIKERVA 112
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
EAL+ V + R+ +LS GQQ+RV +ARAL + +V+++DEP A+D K ++M
Sbjct: 113 EALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLE 172
Query: 190 LKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNE 236
LK L E I + TH+ + DR + K + G +I+ E
Sbjct: 173 LKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221
>gnl|CDD|73004 cd03245, ABCC_bacteriocin_exporters, ABC-type bacteriocin
exporters. Many non-lantibiotic bacteriocins of lactic
acid bacteria are produced as precursors which have
N-terminal leader peptides that share similarities in
amino acid sequence and contain a conserved processing
site of two glycine residues in positions -1 and -2. A
dedicated ATP-binding cassette (ABC) transporter is
responsible for the proteolytic cleavage of the leader
peptides and subsequent translocation of the
bacteriocins across the cytoplasmic membrane..
Length = 220
Score = 101 bits (252), Expect = 3e-22
Identities = 70/228 (30%), Positives = 113/228 (49%), Gaps = 30/228 (13%)
Query: 10 GGLELKDISVTYPNG-YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
G +E +++S +YPN AL++V+L I A+IG G+GKSTL + + GL GS
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 69 ISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY 125
+ + + ADL I Y+PQ ++ F + D + +G +D
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTL---FYGTLRDNITLGA---------PLADDE 108
Query: 126 RIVTEALENVGMSSMRQR-------QIGE----LSIGQQKRVFLARALAQKSQVIIMDEP 174
RI+ A E G++ + QIGE LS GQ++ V LARAL ++++DEP
Sbjct: 109 RIL-RAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEP 167
Query: 175 FAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
+A+D +E + L+ LL + +I++ TH S+ DR I +
Sbjct: 168 TSAMDMNSEERLKERLRQLLGDKTLIII-THR-PSLLDLVDRIIVMDS 213
>gnl|CDD|73009 cd03250, ABCC_MRP_domain1, Domain 1 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminas, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 204
Score = 100 bits (251), Expect = 4e-22
Identities = 63/228 (27%), Positives = 107/228 (46%), Gaps = 43/228 (18%)
Query: 12 LELKDISVTYPNGYC----ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
+ ++D S T+ +G L+D+NL +P+ + A++G G+GKS+L A++G + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 68 SISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI 127
S+S+ IAY+ Q W + + ++ G+ Y
Sbjct: 61 SVSVPGS----------IAYVSQEP---WIQNGTIRENILFGKPFDEER--------YEK 99
Query: 128 VTEA------LENVGMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAA 177
V +A LE + +IGE LS GQ++R+ LARA+ + + ++D+P +A
Sbjct: 100 VIKACALEPDLEI--LPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSA 157
Query: 178 IDFKTEREMIF---LLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
+D R IF +L LLN ILV TH + +P D+ + L
Sbjct: 158 VDAHVGRH-IFENCILGLLLNNKTRILV-THQLQLLPH-ADQIVVLDN 202
>gnl|CDD|73021 cd03262, ABC_HisP_GlnQ_permeases, HisP and GlnQ are the ATP-binding
components of the bacterial periplasmic histidine and
glutamine permeases, repectively. Histidine permease is
a multisubunit complex containing the HisQ and HisM
integral membrane subunits and two copies of HisP. HisP
has properties intermediate between those of integral
and peripheral membrane proteins and is accessible from
both sides of the membrane, presumably by its
interaction with HisQ and HisM. The two HisP subunits
form a homodimer within the complex. The domain
structure of the amino acid uptake systems is typical
for prokaryote extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein..
Length = 213
Score = 100 bits (251), Expect = 4e-22
Identities = 59/215 (27%), Positives = 108/215 (50%), Gaps = 13/215 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E+K++ ++ + L+ ++L + + + +IG +G+GKSTL + I L D G+I I
Sbjct: 1 IEIKNLHKSF-GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIII 59
Query: 72 FNQTVENALKADL-----IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDY 125
+ + K + + Q ++ FP L V + + + K + +
Sbjct: 60 DGLKLTDDKKNINELRQKVGMVFQQFNL---FPHLTVLENITLAPIKVKGMSKAEAE--- 113
Query: 126 RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTERE 185
E LE VG++ +LS GQQ+RV +ARALA +V++ DEP +A+D + E
Sbjct: 114 ERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGE 173
Query: 186 MIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
++ ++K L E + ++V TH + DR IF+
Sbjct: 174 VLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFM 208
>gnl|CDD|73055 cd03296, ABC_CysA_sulfate_importer, Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The
complex is composed of two ATP-binding proteins (cysA),
two transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 239
Score = 100 bits (250), Expect = 5e-22
Identities = 67/221 (30%), Positives = 113/221 (51%), Gaps = 19/221 (8%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
+E++++S + + + AL+DV+L IP + AL+G +G+GK+TL + I GL D G+I
Sbjct: 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFP-------ILVEDVVMMG-RYKHMNWRRVASN 122
+ D Q ++ + F + V D V G R K + R +
Sbjct: 61 FGGE--------DATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAE 112
Query: 123 NDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
+ V E L+ V + + R +LS GQ++RV LARALA + +V+++DEPF A+D K
Sbjct: 113 IRAK-VHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171
Query: 183 EREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK 222
+E+ L+ L +E + + TH+ DR + + K
Sbjct: 172 RKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNK 212
>gnl|CDD|33915 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 100 bits (249), Expect = 6e-22
Identities = 65/260 (25%), Positives = 111/260 (42%), Gaps = 34/260 (13%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
+ D +L + E I ++GL+G+GKSTL + + LI +G I + + + A+L
Sbjct: 43 GVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRE 102
Query: 87 YIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY-------------RIVTEALE 133
+ + I F + + R V N + EALE
Sbjct: 103 L--RRKKISMVFQ----------SFALLPHRTVLENVAFGLEVQGVPKAEREERALEALE 150
Query: 134 NVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM---IFLL 190
VG+ + ELS G Q+RV LARALA +++MDE F+A+D EM + L
Sbjct: 151 LVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLEL 210
Query: 191 KSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNE--DNIQKTFGAQV 247
++ L + I+ + TH+++ DR +K ++ G +I ++ + F V
Sbjct: 211 QAKLKKTIVFI--THDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYVRDFVRNV 268
Query: 248 SPQSSILNESNIQTTFKAEV 267
S +L +I +
Sbjct: 269 DR-SRVLTAKDIMRRPDLLI 287
>gnl|CDD|73053 cd03294, ABC_Pro_Gly_Bertaine, This family comprises the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system
belong to the larger ATP-Binding Cassette (ABC)
transporter superfamily. The characteristic feature of
these transporters is the obligatory coupling of ATP
hydrolysis to substrate translocation. ABC transporters
are a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 269
Score = 99.9 bits (249), Expect = 8e-22
Identities = 64/213 (30%), Positives = 100/213 (46%), Gaps = 3/213 (1%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
+ DV+L + E I ++GL+G+GKSTL + I LI G + I Q + + +L
Sbjct: 39 GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRE 98
Query: 87 YIPQTESIDW-TFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQI 145
+ S+ + +F +L V+ + + V EALE VG+ +
Sbjct: 99 LRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP 158
Query: 146 GELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIMILVST 204
ELS G Q+RV LARALA +++MDE F+A+D REM L L E I+ T
Sbjct: 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFIT 218
Query: 205 HNINSIPSFCDRTIFLKK-TVLASGLTSDIFNE 236
H+++ DR +K ++ G +I
Sbjct: 219 HDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251
>gnl|CDD|72975 cd03216, ABC_Carb_Monos_I, This family represents the domain I of
the carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
Pentoses include xylose, arabinose, and ribose.
Important hexoses include glucose, galactose, and
fructose. In members of the Carb_monos family, the
single hydrophobic gene product forms a homodimer while
the ABC protein represents a fusion of two
nucleotide-binding domains. However, it is assumed that
two copies of the ABC domains are present in the
assembled transporter..
Length = 163
Score = 99.0 bits (247), Expect = 1e-21
Identities = 47/211 (22%), Positives = 91/211 (43%), Gaps = 56/211 (26%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LEL+ I+ + AL+ V+L + + AL+G NGAGKSTL + + GL D G I
Sbjct: 1 LELRGITKRFGGVK-ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI-- 57
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEA 131
++ + V+ + +A
Sbjct: 58 -----------------------------------------LVDGKEVSFAS----PRDA 72
Query: 132 LEN-VGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLL 190
+ M + +LS+G+++ V +ARALA+ ++++I+DEP AA+ + ++
Sbjct: 73 RRAGIAM-------VYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVI 125
Query: 191 KSLLNEDIMILVSTHNINSIPSFCDRTIFLK 221
+ L + + ++ +H ++ + DR L+
Sbjct: 126 RRLRAQGVAVIFISHRLDEVFEIADRVTVLR 156
>gnl|CDD|30834 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 99.2 bits (247), Expect = 1e-21
Identities = 53/216 (24%), Positives = 96/216 (44%), Gaps = 27/216 (12%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE +++S Y G L+D++ I A++G NGAGKSTL + + G + G++ +
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEA 131
+TV+ I Y Q ++E++ + D + V
Sbjct: 382 -GETVK-------IGYFDQHRDELDPDKTVLEEL-----------SEGFPDGDEQEVRAY 422
Query: 132 LENVGMSSMRQRQ-IGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLL 190
L G + Q + +G LS G++ R+ LA+ L Q ++++DEP +D E + L
Sbjct: 423 LGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD----IESLEAL 478
Query: 191 KSLLNE--DIMILVSTHNINSIPSFCDRTIFLKKTV 224
+ L + ++LVS H+ + R ++ V
Sbjct: 479 EEALLDFEGTVLLVS-HDRYFLDRVATRIWLVEDKV 513
Score = 90.7 bits (225), Expect = 4e-19
Identities = 58/237 (24%), Positives = 99/237 (41%), Gaps = 45/237 (18%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ L+++S+ Y LE+V+L + L+G NGAGKSTL + + G + D G ++
Sbjct: 4 ITLENLSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRR--------VASNN 123
K + Y+ Q +D +L D V+ G + +A +
Sbjct: 63 --------PKGLRVGYLSQEPPLDPEKTVL--DYVIEGFGELRELLAELEEAYALLADPD 112
Query: 124 DYRI------------------VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQK 165
D + EAL +G R + LS G ++RV LARAL ++
Sbjct: 113 DELLAELEALLEELDGWTLEARAEEALLGLGFPD-EDRPVSSLSGGWRRRVALARALLEE 171
Query: 166 SQVIIMDEPFAAIDFKTEREMIFLLKSLLN--EDIMILVSTHNINSIPSFCDRTIFL 220
++++DEP +D E I L+ L +I+VS H+ + + + L
Sbjct: 172 PDLLLLDEPTNHLD----LESIEWLEDYLKRYPGTVIVVS-HDRYFLDNVATHILEL 223
>gnl|CDD|33632 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 98.1 bits (244), Expect = 3e-21
Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 14/232 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L L D+ +Y G+ + +L +P I A++G +GAGKSTL I G G I I
Sbjct: 2 LALDDVRFSY--GHLPMR-FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILI 58
Query: 72 FNQTVENALKADL-IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVT 129
+ A+ ++ + Q ++ F L V + +G + V
Sbjct: 59 NGVDHTASPPAERPVSMLFQENNL---FAHLTVAQNIGLGLSPGLKLNAE----QREKVE 111
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
A VG++ +R GELS GQ++RV LAR L ++ ++++DEPF+A+D EM+ L
Sbjct: 112 AAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171
Query: 190 LKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNI 239
+ L +E + +L+ TH+ DR +FL + A G T ++ +
Sbjct: 172 VSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKAS 223
>gnl|CDD|32455 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 97.6 bits (243), Expect = 3e-21
Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 30/228 (13%)
Query: 10 GGLELKDISVTY-PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
G +E +++S Y P+ LED++L IP A++G +G+GKSTL + ++GL +G
Sbjct: 470 GEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529
Query: 69 ISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY 125
I + + + A L + Y+ Q D + N
Sbjct: 530 ILLDGVDLNDIDLASLRRQVGYVLQ-------------DPFLFSGSIRENIALGNPEATD 576
Query: 126 RIVTEALENVG-------MSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEP 174
+ EA + G + +GE LS GQ++R+ LARAL K +++++DE
Sbjct: 577 EEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEA 636
Query: 175 FAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
+A+D +TE ++ L +L +I++ H +++I S DR I L +
Sbjct: 637 TSALDPETEAIILQNLLQILQGRTVIII-AHRLSTIRS-ADRIIVLDQ 682
>gnl|CDD|32710 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 97.6 bits (243), Expect = 4e-21
Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 18/220 (8%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ +++S YP G AL DV+ IP+ L G +GAGKSTL + I G +G I +
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 72 FNQTVENALKADLIAYIPQTESIDWT-FPIL-----VEDVVMMGR---YKHMNWRRVASN 122
+ LK I ++ + + + F +L E+V + R RR
Sbjct: 62 NGHDLSR-LKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRR--- 117
Query: 123 NDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
V+E L+ VG+ + +LS G+Q+RV +ARA+ + V++ DEP +D
Sbjct: 118 -----VSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172
Query: 183 EREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
E++ L + + +L++TH++ + R + L+
Sbjct: 173 SWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALED 212
>gnl|CDD|73054 cd03295, ABC_OpuCA_Osmoprotection, OpuCA is a the ATP binding
component of a bacterial solute transporter that serves
a protective role to cells growing in a hyperosmolar
environment. ABC (ATP-binding cassette) transporter
nucleotide-binding domain; ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 242
Score = 97.2 bits (242), Expect = 4e-21
Identities = 63/225 (28%), Positives = 106/225 (47%), Gaps = 20/225 (8%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E ++++ Y G A+ ++NL I + LIG +G+GK+T + I LI G I I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 72 FNQTVENALKADL---IAYIPQTESIDWTFP--ILVEDVVMMGRYKHMNWRRVASNNDYR 126
+ + +L I Y+ Q + FP + E++ ++ + W +
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGL---FPHMTVEENIALVPKLLK--WPKEKIR---E 112
Query: 127 IVTEALENVGM--SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
E L VG+ + R ELS GQQ+RV +ARALA +++MDEPF A+D T
Sbjct: 113 RADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172
Query: 185 EM---IFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLA 226
++ L+ L + I+ + TH+I+ DR +K +
Sbjct: 173 QLQEEFKRLQQELGKTIVFV--THDIDEAFRLADRIAIMKNGEIV 215
>gnl|CDD|35282 KOG0059, KOG0059, KOG0059, Lipid exporter ABCA1 and related
proteins, ABC superfamily [Lipid transport and
metabolism, General function prediction only].
Length = 885
Score = 97.0 bits (241), Expect = 5e-21
Identities = 51/224 (22%), Positives = 95/224 (42%), Gaps = 11/224 (4%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L L ++S Y A+ ++ +P L+G+NGAGK+T F+ + G G I
Sbjct: 565 LVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALI 624
Query: 72 FNQTVENALKAD----LIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI 127
+ + + Y PQ +++ W E + R + + + S
Sbjct: 625 KGHDITVSTDFQQVRKQLGYCPQFDAL-WEELTGREHLEFYARLRGLPRSDIGS-----A 678
Query: 128 VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
+ + L VG+ +Q+ S G ++R+ A AL VI++DEP +D K R +
Sbjct: 679 IEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLW 738
Query: 188 FLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLT 230
++ L I++++H++ + C RT I + + G
Sbjct: 739 DIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSP 782
>gnl|CDD|35277 KOG0054, KOG0054, KOG0054, Multidrug resistance-associated
protein/mitoxantrone resistance protein, ABC superfamily
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 1381
Score = 96.9 bits (241), Expect = 6e-21
Identities = 62/265 (23%), Positives = 114/265 (43%), Gaps = 35/265 (13%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
L+D+N I + + A++G G+GKS+L AI+G +P GS+++ +A
Sbjct: 536 TLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG----------SVA 585
Query: 87 YIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEAL----ENVGMSSMRQ 142
Y+PQ W V + ++ G + R Y V +A + +
Sbjct: 586 YVPQQP---WIQNGTVRENILFG--SPYDEER------YDKVIKACALKKDLEILPFGDL 634
Query: 143 RQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF--LLKSLLNE 196
+IGE LS GQ++R+ LARA+ Q + + ++D+P +A+D + IF ++ LL
Sbjct: 635 TEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKH-IFEECIRGLLRG 693
Query: 197 DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTFGAQVSPQSSILN 255
+ILV TH + +P D+ I LK ++ SG ++ + +
Sbjct: 694 KTVILV-THQLQFLPH-ADQIIVLKDGKIVESGTYEELLKSGGDFAELAHEEESEQEEEA 751
Query: 256 ESNIQTTFKAEVYPQINSTMCIKKS 280
+ ++ + S +
Sbjct: 752 SEKDLESGESSRESESRSLESLSSE 776
Score = 88.4 bits (219), Expect = 2e-18
Identities = 63/237 (26%), Positives = 107/237 (45%), Gaps = 37/237 (15%)
Query: 8 TKGGLELKDISVTY-PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
+KG +E +D+S+ Y PN L+ ++ I ++G GAGKS+L A+ L+ +
Sbjct: 1135 SKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAE 1194
Query: 67 GSISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNN 123
G I I + DL ++ IPQ P+L V N +
Sbjct: 1195 GEILIDGVDISKIGLHDLRSRLSIIPQD-------PVLFSGTV------RFNLDPFDEYS 1241
Query: 124 DYRIVTEALENVGMSSMRQRQIGEL-----------SIGQQKRVFLARALAQKSQVIIMD 172
D I EALE + + G L S+GQ++ + LARAL +KS+++++D
Sbjct: 1242 DDEI-WEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLD 1300
Query: 173 EPFAAIDFKTEREMIFLLKSLLNE---DIMILVSTHNINSIPSFCDRTIFLKKTVLA 226
E A++D +T+ L++ + E D +L H +N++ DR + L +
Sbjct: 1301 EATASVDPETDA----LIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVV 1352
>gnl|CDD|31327 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 95.9 bits (238), Expect = 1e-20
Identities = 58/235 (24%), Positives = 103/235 (43%), Gaps = 29/235 (12%)
Query: 2 KTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL 61
+ T G +E +++S +YP L+D++ I A++G +G+GKSTL + ++ L
Sbjct: 319 PDPLKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRL 378
Query: 62 IPLDKGSISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRR 118
G I I + + L I + Q F + + + +GR +
Sbjct: 379 YDPTSGEILIDGIDIRDISLDSLRKRIGIVSQD---PLLFSGTIRENIALGRPDATDEE- 434
Query: 119 VASNNDYRIVTEALENVGMSSMRQR-------QIGE----LSIGQQKRVFLARALAQKSQ 167
+ EAL+ +GE LS GQ++R+ +ARAL +
Sbjct: 435 ---------IEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485
Query: 168 VIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
++I+DE +A+D +TE + LK LL +++ H +++I DR I L
Sbjct: 486 ILILDEATSALDTETEALIQDALKKLLKGRTTLII-AHRLSTI-KNADRIIVLDN 538
>gnl|CDD|73051 cd03292, ABC_FtsE_transporter, FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring..
Length = 214
Score = 96.1 bits (239), Expect = 1e-20
Identities = 65/220 (29%), Positives = 105/220 (47%), Gaps = 18/220 (8%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E +++ TYPNG AL+ +N+ I L+G +GAGKSTL + I G+I +
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 72 FNQTVENALKADLIAYIPQTESIDWT-FPIL----VEDVVMMG----RYKHMNWRRVASN 122
Q V + L+ I Y+ + + + F +L V + V R+
Sbjct: 61 NGQDVSD-LRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKR--- 116
Query: 123 NDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
V ALE VG+S + ELS G+Q+RV +ARA+ ++I DEP +D T
Sbjct: 117 -----VPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDT 171
Query: 183 EREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
E++ LLK + ++V+TH + + R I L++
Sbjct: 172 TWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALER 211
>gnl|CDD|73178 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 96.1 bits (239), Expect = 1e-20
Identities = 59/236 (25%), Positives = 99/236 (41%), Gaps = 51/236 (21%)
Query: 12 LELKDISVTYPNGY--------CALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP 63
LE+K++ +P G A++ V+ I E L+G +G GKSTL + I+GL
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 64 LDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNN 123
G I + + K +
Sbjct: 65 PTSGEILFEGKDITKLSKEERR-------------------------------------- 86
Query: 124 DYRIVTEALENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
V E LE VG+ R ELS GQ++R+ +ARALA ++I+ DEP +A+D
Sbjct: 87 --ERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV 144
Query: 183 EREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNE 236
+ +++ LLK L E + L +H+++ + DR + ++ G T ++F+
Sbjct: 145 QAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSN 200
>gnl|CDD|73025 cd03266, ABC_NatA_sodium_exporter, NatA is the ATPase component of
a bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilus, NatAB is inducible by
agents such as ethanol and protonophores, which lower
the protonmotive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunomycin- and doxorubicin-efflux system.
Hence, the functional NatAB is presumably assembled
with two copies of a single ATP-binding protein and a
single intergral membrane protein..
Length = 218
Score = 95.3 bits (237), Expect = 1e-20
Identities = 49/207 (23%), Positives = 96/207 (46%), Gaps = 13/207 (6%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFN-QTVENALKADL- 84
A++ V+ + +T L+G NGAGK+T + + GL+ D G ++ V+ +A
Sbjct: 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRR 79
Query: 85 IAYIPQTESIDWTFPILV--EDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQ 142
+ ++ + + + L E++ + + + + E + +GM +
Sbjct: 80 LGFVSDSTGL---YDRLTARENLEYFAGLYGLKGDELTAR-----LEELADRLGMEELLD 131
Query: 143 RQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILV 202
R++G S G +++V +ARAL V+++DEP +D R + ++ L IL
Sbjct: 132 RRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILF 191
Query: 203 STHNINSIPSFCDRTIFLKK-TVLASG 228
STH + + CDR + L + V+ G
Sbjct: 192 STHIMQEVERLCDRVVVLHRGRVVYEG 218
>gnl|CDD|34177 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 94.6 bits (235), Expect = 3e-20
Identities = 65/212 (30%), Positives = 104/212 (49%), Gaps = 12/212 (5%)
Query: 12 LELKDISVTYPN-GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
L + +S++Y ALEDV+L I + ++G +G GK+TL I G + +GSI
Sbjct: 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ 63
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVT 129
+ + +E + + Q E++ P L V D V G + R + I
Sbjct: 64 LNGRRIEGPGAERGVVF--QNEAL---LPWLNVIDNVAFG----LQLRGIEKAQRREIAH 114
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
+ L VG+ + I +LS G ++RV +ARALA + Q++++DEPF A+D T +M L
Sbjct: 115 QMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQEL 174
Query: 190 LKSLLNE-DIMILVSTHNINSIPSFCDRTIFL 220
L L E +L+ TH+I R + L
Sbjct: 175 LLDLWQETGKQVLLITHDIEEALFLATRLVVL 206
>gnl|CDD|73056 cd03297, ABC_ModC_molybdenum_transporter, ModC is an ABC-type
transporter and the ATPase component of a molybdate
transport system that also includes the periplasmic
binding protein ModA and the membrane protein ModB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 214
Score = 94.5 bits (235), Expect = 3e-20
Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 35/216 (16%)
Query: 30 DVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTV--ENALKADL--- 84
++ + E T + G +GAGKSTL + I GL D G+I N TV ++ K +L
Sbjct: 16 KIDFDLNEEV-TGIFGASGAGKSTLLRCIAGLEKPDGGTIV-LNGTVLFDSRKKINLPPQ 73
Query: 85 ---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWR-------RVASNNDYRI-VTEALE 133
I + Q ++ FP H+N R + N + RI V E L+
Sbjct: 74 QRKIGLVFQQYAL---FP-------------HLNVRENLAFGLKRKRNREDRISVDELLD 117
Query: 134 NVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSL 193
+G+ + R +LS G+++RV LARALA + +++++DEPF+A+D +++ LK +
Sbjct: 118 LLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQI 177
Query: 194 LNE-DIMILVSTHNINSIPSFCDRTIFLKKTVLASG 228
+I ++ TH+++ DR + ++ L
Sbjct: 178 KKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI 213
>gnl|CDD|73058 cd03299, ABC_ModC_like, Archeal protein closely related to ModC.
ModC is an ABC-type transporter and the ATPase component
of a molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 235
Score = 93.0 bits (231), Expect = 8e-20
Identities = 63/229 (27%), Positives = 117/229 (51%), Gaps = 15/229 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L+++++S + L++V+L + ++G G+GKS L + I G I D G I +
Sbjct: 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILL 58
Query: 72 FNQTVENALKADL--IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIV 128
+ + N L + I+Y+PQ ++ FP + V + G + R+V R V
Sbjct: 59 NGKDITN-LPPEKRDISYVPQNYAL---FPHMTVYKNIAYG----LKKRKVDKKEIERKV 110
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
E E +G+ + R+ LS G+Q+RV +ARAL +++++DEPF+A+D +T+ ++
Sbjct: 111 LEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLRE 170
Query: 189 LLKSLLNE-DIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFN 235
LK + E + +L TH+ + D+ I L ++ G ++F
Sbjct: 171 ELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFK 219
>gnl|CDD|31314 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 92.9 bits (231), Expect = 9e-20
Identities = 72/248 (29%), Positives = 121/248 (48%), Gaps = 28/248 (11%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD-----K 66
+E++D+++ Y AL+D+NL IP+N +TALIG +G GKSTL + + + L +
Sbjct: 8 IEVRDLNLYY-GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE 66
Query: 67 GSISIFNQTVENALKADLIA---YIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNN 123
G + + + + K D++ + FP+ + D V G H +
Sbjct: 67 GEVLLDGKNI-YDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLH----GIKDKE 121
Query: 124 DYRIVTEALENVGMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
IV +L+ + + ++ + LS GQQ+R+ +ARALA K +V++MDEP +A+D
Sbjct: 122 LDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181
Query: 180 ----FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIF 234
K E E+I LK + I++ THN+ D T F ++ G T IF
Sbjct: 182 PISTLKIE-ELITELK----KKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIF 236
Query: 235 NEDNIQKT 242
++T
Sbjct: 237 TNPKHKRT 244
>gnl|CDD|34291 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 90.7 bits (225), Expect = 4e-19
Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 16/243 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L L +SV++ G+ AL D++ + + LIG NGAGK+TL I G +G +
Sbjct: 6 LYLDGVSVSF-GGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLF 64
Query: 72 FNQTVENALKADLIAYIP-----QTESIDWTFPIL-VEDVVMMGRYKHMNWRRV----AS 121
T L IA Q ++ F L V + + + + +
Sbjct: 65 DGDTDLTKLPEHRIARAGIGRKFQKPTV---FENLTVRENLELALNRDKSVFASLFARLR 121
Query: 122 NNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
+ R + E L +G+ R R LS GQ++ + + LAQ +++++DEP A +
Sbjct: 122 AEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDA 181
Query: 182 TEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDR-TIFLKKTVLASGLTSDIFNEDNIQ 240
+ LLKS L ILV H++ + D+ T+ + +VLA G ++ N+ +
Sbjct: 182 ETEKTAELLKS-LAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPKVI 240
Query: 241 KTF 243
+ +
Sbjct: 241 EVY 243
>gnl|CDD|34592 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 90.7 bits (225), Expect = 4e-19
Identities = 65/231 (28%), Positives = 111/231 (48%), Gaps = 30/231 (12%)
Query: 5 VASTKGGLELKDISVTYPNG-YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP 63
A+T LEL+++S TYP AL++ NL + + A++G +G+GKSTL Q + G
Sbjct: 330 TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD 389
Query: 64 LDKGSISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVA 120
+GSI++ + + + L I+ + Q + F + D N R
Sbjct: 390 PQQGSITLNGVEIASLDEQALRETISVLTQRVHL---FSGTLRD----------NLRLAN 436
Query: 121 SNNDYRIVTEALENVGMSSMRQ-------RQIGE----LSIGQQKRVFLARALAQKSQVI 169
+ + AL+ VG+ + + +GE LS G+++R+ LARAL + +
Sbjct: 437 PDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLW 496
Query: 170 IMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
++DEP +D TER+++ LL E +L+ TH + + DR I L
Sbjct: 497 LLDEPTEGLDPITERQVLALLFEHA-EGKTLLMVTHRLRGL-ERMDRIIVL 545
>gnl|CDD|73060 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed..
Length = 213
Score = 90.2 bits (224), Expect = 5e-19
Identities = 59/220 (26%), Positives = 103/220 (46%), Gaps = 17/220 (7%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+EL++++ + N AL+D+NL I + L+G +G GK+T + I GL G I I
Sbjct: 1 VELENVTKRFGNVT-ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYI 59
Query: 72 FNQTVENALKADL-IAYIPQTESIDWTFPILVEDVVMMGRYKHMNW----RRVASNNDYR 126
+ V + D IA + Q ++ +P M Y ++ + R+V +
Sbjct: 60 GGRDVTDLPPKDRDIAMVFQNYAL---YP-------HMTVYDNIAFGLKLRKVPKDEIDE 109
Query: 127 IVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
V E E + + + R+ +LS GQ++RV L RA+ ++ +V +MDEP + +D K +M
Sbjct: 110 RVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169
Query: 187 IFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKKTVL 225
LK L + TH+ + DR + +
Sbjct: 170 RAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQI 209
>gnl|CDD|33913 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 90.3 bits (224), Expect = 5e-19
Identities = 66/246 (26%), Positives = 124/246 (50%), Gaps = 28/246 (11%)
Query: 12 LELKDISVTYP----------NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL 61
LE++D+ V +P + A++ ++L + L+G +G+GKSTL A++ L
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 62 IPLDKGSISIFNQTVENALKADLIAYIPQTE--------SIDWTFPIL-VEDVVMMGRYK 112
IP +G I Q ++ + ++ + + S+ P + V ++ G
Sbjct: 337 IP-SQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS---PRMTVGQIIEEGLRV 392
Query: 113 HMNWRRVASNNDYRIVTEALENVGM-SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIM 171
H + A+ D R V EALE VG+ + R R E S GQ++R+ +ARAL K ++I++
Sbjct: 393 H-EPKLSAAERDQR-VIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILL 450
Query: 172 DEPFAAIDFKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGL 229
DEP +A+D + +++ LL+ L + + L +H++ + + C R I ++ ++ G
Sbjct: 451 DEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGP 510
Query: 230 TSDIFN 235
T +F
Sbjct: 511 TEAVFA 516
Score = 79.9 bits (197), Expect = 8e-16
Identities = 67/248 (27%), Positives = 114/248 (45%), Gaps = 33/248 (13%)
Query: 12 LELKDISVTYPNGYC---ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD--- 65
L ++++SV + A++ ++ I AL+G +G+GKS +I+GL+P
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 66 --KGSISIFNQTVE-------NALKADLIAYIPQT--ESIDWTFPI---LVEDVVMMGRY 111
GSI + + ++ + I I Q S++ I L E + +
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGL 126
Query: 112 KHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIG---ELSIGQQKRVFLARALAQKSQV 168
R R + E LE VG+ +R ELS GQ++RV +A ALA + +
Sbjct: 127 SRAAARA-------RAL-ELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL 178
Query: 169 IIMDEPFAAIDFKTEREMIFLLKSLLNEDIM-ILVSTHNINSIPSFCDRTIFLKK-TVLA 226
+I DEP A+D + +++ LLK L E M IL TH++ + F DR ++ ++
Sbjct: 179 LIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVE 238
Query: 227 SGLTSDIF 234
+G T +F
Sbjct: 239 TGTTETLF 246
>gnl|CDD|35278 KOG0055, KOG0055, KOG0055, Multidrug/pheromone exporter, ABC
superfamily [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 1228
Score = 89.5 bits (222), Expect = 9e-19
Identities = 56/251 (22%), Positives = 111/251 (44%), Gaps = 26/251 (10%)
Query: 7 STKGGLELKDISVTYPN--GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPL 64
S KG +E +++ +YP+ L+ V+L IP AL+G +G+GKSTL Q +
Sbjct: 346 SIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDP 405
Query: 65 DKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124
G + I + + N L + I F + + + G+ A+ +
Sbjct: 406 TSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPD-------ATREE 458
Query: 125 YRIVTEALENVGMSSMRQR-------QIGE----LSIGQQKRVFLARALAQKSQVIIMDE 173
+ EA + + +GE LS GQ++R+ +ARAL + +++++DE
Sbjct: 459 ---IEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDE 515
Query: 174 PFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSD 232
+A+D ++ER + L I+V H +++I + D+ +++ ++ G +
Sbjct: 516 ATSALDAESERVVQEALDKASKGRTTIVV-AHRLSTIRN-ADKIAVMEEGKIVEQGTHDE 573
Query: 233 IFNEDNIQKTF 243
+ I +
Sbjct: 574 LIALGGIYSSL 584
Score = 54.4 bits (131), Expect = 3e-08
Identities = 48/196 (24%), Positives = 90/196 (45%), Gaps = 37/196 (18%)
Query: 9 KGGLELKDISVTYPN--GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
KG +E +++S YP L +++L I AL+G +G+GKST+ + D
Sbjct: 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDA 1044
Query: 67 GSISIFNQTVENALKADL---IAYIPQTESIDWTFPIL----VEDVVMMGRYKHMNWRRV 119
G + I +++ L I + Q P+L + + + G
Sbjct: 1045 GKVKIDGVDIKDLNLKWLRKQIGLVSQE-------PVLFNGTIRENIAYG-------SEE 1090
Query: 120 ASNNDYRIVTEALENVGM----SSMRQ---RQIGE----LSIGQQKRVFLARALAQKSQV 168
S + + EA + SS+ Q ++GE LS GQ++R+ +ARA+ + ++
Sbjct: 1091 VSEEE---IIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKI 1147
Query: 169 IIMDEPFAAIDFKTER 184
+++DE +A+D ++ER
Sbjct: 1148 LLLDEATSALDSESER 1163
>gnl|CDD|73057 cd03298, ABC_ThiQ_thiamine_transporter, ABC-type thiamine tranport
system; part of the binding-protein-dependent transport
system tbpA-thiPQ for thiamine and TPP. Probably
responsible for the translocation of thiamine across the
membrane. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 211
Score = 88.9 bits (220), Expect = 1e-18
Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 14/221 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ L I +Y G + +L + ITA++G +G+GKSTL I G G + I
Sbjct: 1 VRLDKIRFSY--GEQPM-HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLI 57
Query: 72 FNQTVENALKADL-IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVT 129
V A AD ++ + Q ++ F L VE V +G + D + +
Sbjct: 58 NGVDVTAAPPADRPVSMLFQENNL---FAHLTVEQNVGLGLSPGLKLTAE----DRQAIE 110
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
AL VG++ + +R GELS G+++RV LAR L + V+++DEPFAA+D EM+ L
Sbjct: 111 VALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDL 170
Query: 190 LKSLLNEDIM-ILVSTHNINSIPSFCDRTIFLKK-TVLASG 228
+ L E M +L+ TH R +FL + A G
Sbjct: 171 VLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|73003 cd03244, ABCC_MRP_domain2, Domain 2 of the ABC subfamily C. This
family is also known as MRP (mulrtidrug
resisitance-associated protein). Some of the MRP
members have five additional transmembrane segments in
their N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate..
Length = 221
Score = 89.0 bits (221), Expect = 1e-18
Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 31/232 (13%)
Query: 10 GGLELKDISVTY-PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
G +E K++S+ Y PN L++++ I ++G G+GKS+L A+ L+ L GS
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 69 ISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY 125
I I + DL I+ IPQ P+L + N +D
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQD-------PVLFSGTI------RSNLDPFGEYSDE 107
Query: 126 RIVTEALENVGMSSMRQRQIGEL-----------SIGQQKRVFLARALAQKSQVIIMDEP 174
+ +ALE VG+ + G L S+GQ++ + LARAL +KS+++++DE
Sbjct: 108 ELW-QALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEA 166
Query: 175 FAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLA 226
A++D +T+ + ++ D +L H +++I DR + L K +
Sbjct: 167 TASVDPETDALIQKTIREAFK-DCTVLTIAHRLDTIID-SDRILVLDKGRVV 216
>gnl|CDD|73024 cd03265, ABC_DrrA, DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 220
Score = 87.6 bits (217), Expect = 3e-18
Identities = 51/221 (23%), Positives = 97/221 (43%), Gaps = 14/221 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E++++ Y + A+ V+ + I L+G NGAGK+T + + L+ G ++
Sbjct: 1 IEVENLVKKY-GDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59
Query: 72 FNQTV--ENALKADLIAYIPQTESIDWTFPILV--EDVVMMGRYKHMNWRRVASNNDYRI 127
V E I + Q S+D L E++ + R + D
Sbjct: 60 AGHDVVREPREVRRRIGIVFQDLSVD---DELTGWENLYIHARLYGVPGAERRERID--- 113
Query: 128 VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
E L+ VG+ R + S G ++R+ +AR+L + +V+ +DEP +D +T +
Sbjct: 114 --ELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVW 171
Query: 188 FLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKKTVLAS 227
++ L E + IL++TH + CDR + + +
Sbjct: 172 EYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIA 212
>gnl|CDD|35280 KOG0057, KOG0057, KOG0057, Mitochondrial Fe/S cluster exporter, ABC
superfamily [Intracellular trafficking, secretion, and
vesicular transport].
Length = 591
Score = 86.8 bits (215), Expect = 6e-18
Identities = 56/232 (24%), Positives = 108/232 (46%), Gaps = 30/232 (12%)
Query: 5 VASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPL 64
+ G +E D+ +Y L+ V+ IP+ A++G NG+GKST+ + ++
Sbjct: 345 IELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD- 403
Query: 65 DKGSISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVAS 121
GSI I Q ++ L I +PQ + F + + G S
Sbjct: 404 YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVL---FNDTILYNIKYGN---------PS 451
Query: 122 NNDYRIVTEALENVGMSSM-------RQRQIGE----LSIGQQKRVFLARALAQKSQVII 170
+D +V + G+ + Q +GE LS G+++RV LARA + + +++
Sbjct: 452 ASDEEVVEAC-KRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILL 510
Query: 171 MDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
+DE +A+D +TERE++ ++ +++ +I++ H ++ + D+ I L
Sbjct: 511 LDEATSALDSETEREILDMIMDVMSGRTVIMI-VHRLDLLK-DFDKIIVLDN 560
>gnl|CDD|33889 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 85.7 bits (212), Expect = 1e-17
Identities = 55/217 (25%), Positives = 99/217 (45%), Gaps = 12/217 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE +++S D++ + + G NGAGK+TL + + GL+ D G +
Sbjct: 3 LEAENLSCER-GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYW 61
Query: 72 FNQTVENALK--ADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVT 129
+ ++N + + Y+ I L E++ W+R + + +
Sbjct: 62 QGEPIQNVRESYHQALLYLGHQPGIKTELTAL-ENLHF--------WQRFHGSGNAATIW 112
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
EAL VG++ + +G+LS GQQ+RV LAR + + I+DEPF A+D + + L
Sbjct: 113 EALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTAL 172
Query: 190 LKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLA 226
+ + + ++L++TH I S R + L T
Sbjct: 173 MAAHAAQGGIVLLTTHQPLPIASAQIRRLDLTATKAT 209
>gnl|CDD|33919 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 84.6 bits (209), Expect = 3e-17
Identities = 59/220 (26%), Positives = 98/220 (44%), Gaps = 16/220 (7%)
Query: 12 LELKDISVTYPNG---YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
+E+ +S T G L+ V L + A++G +G+GKSTL + GL G
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 69 ISIFNQTVEN-------ALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVAS 121
+ + Q + AL+A + ++ Q+ + L E+V + + R +S
Sbjct: 67 VRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTAL-ENVAL-----PLELRGESS 120
Query: 122 NNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
+ LE VG+ +LS G+Q+RV LARA A + V+ DEP +D
Sbjct: 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180
Query: 182 TEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLK 221
T ++ LL +L E LV + + + CDR + L+
Sbjct: 181 TGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLR 220
>gnl|CDD|31298 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 84.5 bits (209), Expect = 3e-17
Identities = 62/223 (27%), Positives = 101/223 (45%), Gaps = 14/223 (6%)
Query: 12 LELKDISVTYPNGYC----ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
+ L + + T+ G AL ++L I E +IG NGAGKSTL AI G + G
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 68 SISIFNQTVEN---ALKADLIAYIPQTESIDWTFPILV--EDVVMMGRYKHMNWRRVASN 122
I I V A +A+L+A + Q + + T P L E++ + A N
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQ-DPLAGTAPELTIEENLALAESRGKKRGLSSALN 120
Query: 123 NDYRIVTEAL---ENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
R +G+ + +IG LS GQ++ + L A +++++DE AA+D
Sbjct: 121 ERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALD 180
Query: 180 FKTEREMIFLLKSLLNED-IMILVSTHNINSIPSFCDRTIFLK 221
KT ++ L ++ E + L+ THN+ + +R I L
Sbjct: 181 PKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLH 223
>gnl|CDD|73013 cd03254, ABCC_Glucan_exporter_like, Glucan exporter ATP-binding
protein. In A. tumefaciens cyclic beta-1, 2-glucan must
be transported into the periplasmic space to exert its
action as a virluence factor. This subfamily belongs to
the MRP-like family and is involved in drug, peptide,
and lipid export. The MRP-like family, similar to all
ABC proteins, have a common four-domain core structure
constituted by two membrane-spanning domains each
composed of six transmembrane (TM) helices and two
nucleotide-binding domains (NBD). ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 229
Score = 82.9 bits (205), Expect = 8e-17
Identities = 53/227 (23%), Positives = 102/227 (44%), Gaps = 29/227 (12%)
Query: 10 GGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSI 69
G +E ++++ +Y L+D+N I A++G GAGK+TL +M KG I
Sbjct: 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 70 SIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYR 126
I + + + L I + Q + F + + + +GR N
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQD---TFLFSGTIMENIRLGR----------PNATDE 107
Query: 127 IVTEALENVGMSSMRQR-------QIGE----LSIGQQKRVFLARALAQKSQVIIMDEPF 175
V EA + G + +GE LS G+++ + +ARA+ + +++I+DE
Sbjct: 108 EVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEAT 167
Query: 176 AAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
+ ID +TE+ + L+ L+ I+++ H +++I D+ + L
Sbjct: 168 SNIDTETEKLIQEALEKLMKGRTSIIIA-HRLSTI-KNADKILVLDD 212
>gnl|CDD|72979 cd03220, ABC_KpsT_Wzt, ABC_KpsT_Wzt The KpsT/Wzt ABC transporter
subfamily is involved in extracellular polysaccharide
export. Among the variety of membrane-linked or
extracellular polysaccharides excreted by bacteria, only
capsular polysaccharides, lipopolysaccharides, and
teichoic acids have been shown to be exported by ABC
transporters. A typical system is made of a conserved
integral membrane and an ABC. In addition to these
proteins, capsular polysaccharide exporter systems
require two 'accessory' proteins to perform their
function: a periplasmic (E.coli) or a lipid-anchored
outer membrane protein called OMA (Neisseria
meningitidis and Haemophilus influenzae) and a
cytoplasmic membrane protein MPA2..
Length = 224
Score = 82.5 bits (204), Expect = 1e-16
Identities = 48/201 (23%), Positives = 88/201 (43%), Gaps = 25/201 (12%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTV-----ENALK 81
AL+DV+ +P LIG NGAGKSTL + + G+ P D G++++ +
Sbjct: 37 ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFN 96
Query: 82 ADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMR 141
+L E++ + GR ++ + + D I L +
Sbjct: 97 PELTGR---------------ENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFI----- 136
Query: 142 QRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMIL 201
+ S G + R+ A A A + ++++DE A D + + L+ LL + ++
Sbjct: 137 DLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVI 196
Query: 202 VSTHNINSIPSFCDRTIFLKK 222
+ +H+ +SI CDR + L+K
Sbjct: 197 LVSHDPSSIKRLCDRALVLEK 217
>gnl|CDD|33894 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 82.4 bits (203), Expect = 1e-16
Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 31/217 (14%)
Query: 43 LIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLI---AYIPQTESIDWTFP 99
L+G NGAGKSTL + G+ GSI Q +E +L AY+ Q ++ + P
Sbjct: 30 LVGPNGAGKSTLLARMAGMTSG-SGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMP 88
Query: 100 ILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENV----GMSSMRQRQIGELSIGQQKR 155
+ W + + + TE L +V + R +LS G+ +R
Sbjct: 89 V---------------WHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQR 133
Query: 156 VFLARALAQ-------KSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNIN 208
V LA + Q Q++++DEP ++D + + LL +L + + I++S+H++N
Sbjct: 134 VRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLN 193
Query: 209 SIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTFG 244
R LK+ +LASG ++ + + +G
Sbjct: 194 HTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAYG 230
>gnl|CDD|31329 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 82.6 bits (204), Expect = 1e-16
Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 16/210 (7%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
AL+D++ I + +IG NGAGKSTL + I G+ G + + + L
Sbjct: 42 ALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVA--PLIELGAG 99
Query: 87 YIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIG 146
+ P+ E++ + G + R + V E +E + + +
Sbjct: 100 FDPELTGR--------ENIYLRGLI--LGLTRKEID---EKVDEIIEFAELGDFIDQPVK 146
Query: 147 ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHN 206
S G R+ + A + ++++DE A D + + + L L+ ++ I++ +H+
Sbjct: 147 TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHD 206
Query: 207 INSIPSFCDRTIFLKK-TVLASGLTSDIFN 235
+ +I +CDR I+L+ + G ++
Sbjct: 207 LGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
>gnl|CDD|30745 COG0396, SufC, ABC-type transport system involved in Fe-S cluster
assembly, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 251
Score = 82.1 bits (203), Expect = 1e-16
Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 35/215 (16%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL--IPLDKGSI 69
LE+KD+ V L+ VNL + E + A++G NG+GKSTL IMG + +G I
Sbjct: 4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI 63
Query: 70 SIFNQTVENALKADLIAYIPQTES------IDWTFPILVEDVVMMGRYKHMNWRRVASNN 123
+ I + E + + +P+ + V + ++ R A N
Sbjct: 64 ---------LFDGEDILELSPDERARAGIFLAFQYPVEIPGV------TNSDFLRAAMNA 108
Query: 124 ----------DYRIVTEALENVGMS-SMRQRQIGE-LSIGQQKRVFLARALAQKSQVIIM 171
+ + E E +G+ +R + E S G++KR + + L + ++ I+
Sbjct: 109 RRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAIL 168
Query: 172 DEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHN 206
DEP + +D + + + +L E +L+ TH
Sbjct: 169 DEPDSGLDIDALKIVAEGINALREEGRGVLIITHY 203
>gnl|CDD|72993 cd03234, ABCG_White, The White subfamily represents ABC
transporters homologous to the Drosophila white gene,
which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners..
Length = 226
Score = 81.4 bits (201), Expect = 2e-16
Identities = 50/212 (23%), Positives = 95/212 (44%), Gaps = 19/212 (8%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK---GSISIFNQTVENALKADL 84
L DV+L + + A++G +G+GK+TL AI G + G I Q +
Sbjct: 23 LNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82
Query: 85 IAYIPQTESIDWTFPIL-VED-----VVMMGRYKHMNWRRVASNNDYRIVTEALENVGMS 138
+AY+ Q D P L V + ++ K + R R+ L ++ ++
Sbjct: 83 VAYVRQD---DILLPGLTVRETLTYTAILRLPRKSSDAIRKK-----RVEDVLLRDLALT 134
Query: 139 SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDI 198
+ + +S G+++RV +A L +V+I+DEP + +D T ++ L L +
Sbjct: 135 RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNR 194
Query: 199 MILVSTHNINS-IPSFCDRTIFLKK-TVLASG 228
+++++ H S + DR + L ++ SG
Sbjct: 195 IVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|72972 cd03213, ABCG_EPDR, ABCG transporters are involved in eye pigment
(EP) precursor transport, regulation of
lipid-trafficking mechanisms, and pleiotropic drug
resistance (DR). DR is a well-described phenomenon
occurring in fungi and shares several similarities with
processes in bacteria and higher eukaryotes. Compared
to other members of the ABC transporter subfamilies, the
ABCG transporter family is composed of proteins that
have an ATP-binding cassette domain at the N-terminus
and a TM (transmembrane) domain at the C-terminus..
Length = 194
Score = 79.8 bits (197), Expect = 7e-16
Identities = 49/219 (22%), Positives = 92/219 (42%), Gaps = 43/219 (19%)
Query: 12 LELKDISVTYPNGY-----CALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLI--PL 64
L ++++VT + L++V+ +TA++G +GAGKSTL A+ G
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 65 DKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124
G + I + ++ +I Y+PQ +D++
Sbjct: 64 VSGEVLINGRPLDKRSFRKIIGYVPQ------------DDILH----------------P 95
Query: 125 YRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
V E L M ++ LS G++KRV +A L ++ +DEP + +D +
Sbjct: 96 TLTVRETL-------MFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSAL 148
Query: 185 EMIFLLKSLLNEDIMILVSTHNI-NSIPSFCDRTIFLKK 222
+++ LL+ L + I+ S H + I D+ + L +
Sbjct: 149 QVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQ 187
>gnl|CDD|143798 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide or belong in different
polypeptide chains.
Length = 119
Score = 80.1 bits (198), Expect = 7e-16
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 20/132 (15%)
Query: 52 STLFQAIMGLIPLDKGSISIFNQTVENALKADL----IAYIPQTESIDWTFPIL-VEDVV 106
STL + I GL+ G+I + + + I + Q FP L V + +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTDLSSRKALRKRIGVVFQD---PQLFPELTVRENL 57
Query: 107 MMG-RYKHMNWRRVASNNDYRIVTEALENVGMSS-MRQRQIGELSIGQQKRVFLARALAQ 164
G R K + R EALE VG+ + + +G LS GQ++RV +ARAL +
Sbjct: 58 FFGLRDKEADAR----------AEEALERVGLPDFLDRSPVGTLSGGQKQRVAIARALLK 107
Query: 165 KSQVIIMDEPFA 176
K +++++DEP A
Sbjct: 108 KPKLLLLDEPTA 119
>gnl|CDD|73005 cd03246, ABCC_Protease_Secretion, This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They
export degradative enzymes by using a type I protein
secretion system and lack an N-terminal signal peptide,
but contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family
of ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA..
Length = 173
Score = 78.7 bits (194), Expect = 2e-15
Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 49/215 (22%)
Query: 12 LELKDISVTYPNGYCA-LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
LE++++S YP L +V+ I A+IG +G+GKSTL + I+GL+ G +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 71 IFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI 127
+ + +L + Y+PQ + L +
Sbjct: 61 LDGADISQWDPNELGDHVGYLPQDD-------ELFSGSIA-------------------- 93
Query: 128 VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
EN+ LS GQ++R+ LARAL +++++DEP + +D + ER +
Sbjct: 94 -----ENI------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN 136
Query: 188 FLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
+ +L +V H ++ S DR + L+
Sbjct: 137 QAIAALKAAGATRIVIAHRPETLAS-ADRILVLED 170
>gnl|CDD|73026 cd03267, ABC_NatA_like, Similar in sequence to NatA, this is the
ATPase component of a bacterial ABC-type Na+ transport
system called NatAB, which catalyzes ATP-dependent
electrogenic Na+ extrusion without mechanically coupled
to proton or K+ uptake. NatB possess six putative
membrane spanning regions at its C-terminus. In B.
subtilis, NatAB is inducible by agents such as ethanol
and protonophores, which lower the protonmotive force
across the membrane. The closest sequence similarity to
NatA is exhibited by DrrA of the two-component
daunomycin- and doxorubicin-efflux system. Hence, the
functional NatAB is presumably assembled with two copies
of the single ATP-binding protein and the single
intergral membrane protein..
Length = 236
Score = 78.7 bits (194), Expect = 2e-15
Identities = 42/200 (21%), Positives = 86/200 (43%), Gaps = 10/200 (5%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQ---TVENALKAD 83
AL+ ++ I + I IG NGAGK+T + + GL+ G + +
Sbjct: 36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR 95
Query: 84 LIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQR 143
+ Q + W P +++ ++ + R D ++E L+ + +
Sbjct: 96 IGVVFGQKTQLWWDLP-VIDSFYLLAAIYDLPPARFKKRLDE--LSELLD---LEELLDT 149
Query: 144 QIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIMILV 202
+ +LS+GQ+ R +A AL + +++ +DEP +D + + LK E +L+
Sbjct: 150 PVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLL 209
Query: 203 STHNINSIPSFCDRTIFLKK 222
++H + I + R + + K
Sbjct: 210 TSHYMKDIEALARRVLVIDK 229
>gnl|CDD|72974 cd03215, ABC_Carb_Monos_II, This family represents domain II of the
carbohydrate uptake proteins that transport only
monosaccharides (Monos). The Carb_Monos family is
involved in the uptake of monosaccharides, such as
pentoses (such as xylose, arabinose, and ribose) and
hexoses (such as xylose, arabinose, and ribose), that
cannot be broken down to simple sugars by hydrolysis.
In members of Carb_Monos family the single hydrophobic
gene product forms a homodimer, while the ABC protein
represents a fusion of two nucleotide-binding domains.
However, it is assumed that two copies of the ABC
domains are present in the assembled transporter..
Length = 182
Score = 78.2 bits (193), Expect = 2e-15
Identities = 55/209 (26%), Positives = 93/209 (44%), Gaps = 44/209 (21%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE++ +SV A+ DV+ + I + GL G G++ L +A+ GL P G I++
Sbjct: 5 LEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITL 59
Query: 72 FNQTVENALKADL----IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI 127
+ V D IAY+P ED G ++
Sbjct: 60 DGKPVTRRSPRDAIRAGIAYVP-------------EDRKREGLVLDLSVA---------- 96
Query: 128 VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
EN+ +SS+ LS G Q++V LAR LA+ +V+I+DEP +D + E+
Sbjct: 97 -----ENIALSSL-------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIY 144
Query: 188 FLLKSLLNEDIMILVSTHNINSIPSFCDR 216
L++ L + +L+ + ++ + CDR
Sbjct: 145 RLIRELADAGKAVLLISSELDELLGLCDR 173
>gnl|CDD|73006 cd03247, ABCC_cytochrome_bd, The CYD subfamily implicated in
cytochrome bd biogenesis. The CydC and CydD proteins
are important for the formation of cytochrome bd
terminal oxidase of E. coli and it has been proposed
that they were necessary for biosynthesis of the
cytochrome bd quinol oxidase and for periplasmic c-type
cytochromes. CydCD were proposed to determine a
heterooligomeric complex important for heme export into
the periplasm or to be involved in the maintenance of
the proper redox state of the periplasmic space. In
Bacillus subtilius, the absence of CydCD does not affect
the presence of halo-cytochrome c in the membrane and
this observation suggests that CydCD proteins are not
involved in the export of heme in this organism..
Length = 178
Score = 77.9 bits (192), Expect = 3e-15
Identities = 53/213 (24%), Positives = 98/213 (46%), Gaps = 46/213 (21%)
Query: 12 LELKDISVTYP-NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
L + ++S +YP L++++L + + AL+G +G+GKSTL Q + G + +G I+
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 71 IFNQTVENALKA--DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
+ V + KA LI+ + Q Y
Sbjct: 61 LDGVPVSDLEKALSSLISVLNQRP--------------------------------YLFD 88
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
T N+G S G+++R+ LAR L Q + ++++DEP +D TER+++
Sbjct: 89 TTLRNNLGR---------RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 189 LLKSLLNEDIMILVSTHNINSIPSFCDRTIFLK 221
L+ +L + +I + TH++ I D+ +FL+
Sbjct: 140 LIFEVLKDKTLIWI-THHLTGIEHM-DKILFLE 170
>gnl|CDD|34224 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 77.2 bits (190), Expect = 5e-15
Identities = 52/232 (22%), Positives = 94/232 (40%), Gaps = 11/232 (4%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI---FNQTVENALKAD 83
A++D++ IP+ I +G NGAGKST + + GL+ G + +
Sbjct: 39 AVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRS 98
Query: 84 LIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQR 143
+ + Q + W P L + + ++ + A D E + + +
Sbjct: 99 IGLVMGQKLQLWWDLPAL-DSLEVLKLIYEIPDDEFAERLD-----FLTEILDLEGFLKW 152
Query: 144 QIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT-EREMIFLLKSLLNEDIMILV 202
+ +LS+GQ+ R LA AL +V+ +DEP +D FL + +L+
Sbjct: 153 PVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLL 212
Query: 203 STHNINSIPSFCDRTIFLKKTVLASGLTSDIFNED-NIQKTFGAQVSPQSSI 253
+TH + I + CDR + + + L T E K F ++ S+
Sbjct: 213 TTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFSVELKQAKSL 264
>gnl|CDD|72990 cd03231, ABC_CcmA_heme_exporter, CcmA, the ATP-binding component of
the bacterial CcmAB transporter. The CCM family is
involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperone
that binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE..
Length = 201
Score = 77.3 bits (190), Expect = 5e-15
Identities = 45/180 (25%), Positives = 76/180 (42%), Gaps = 14/180 (7%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALK--ADLI 85
++ + + G NG+GK+TL + + GL P G + + ++ A +
Sbjct: 16 FSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGL 75
Query: 86 AYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQI 145
Y+ I T +L N R +++ V EAL VG++ R +
Sbjct: 76 LYLGHAPGIKTTLSVL------------ENLRFWHADHSDEQVEEALARVGLNGFEDRPV 123
Query: 146 GELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTH 205
+LS GQQ+RV LAR L + I+DEP A+D + M++++TH
Sbjct: 124 AQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
>gnl|CDD|35279 KOG0056, KOG0056, KOG0056, Heavy metal exporter HMT1, ABC
superfamily [Inorganic ion transport and metabolism].
Length = 790
Score = 76.2 bits (187), Expect = 8e-15
Identities = 54/217 (24%), Positives = 106/217 (48%), Gaps = 28/217 (12%)
Query: 8 TKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
T+G +E +++ Y G L D++ + AL+G +GAGKST+ + + ++ G
Sbjct: 534 TQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSG 593
Query: 68 SISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124
SI+I Q + N ++ L I +PQ +L D ++ ++ + + +++N+
Sbjct: 594 SITIDGQDIRNVTQSSLRSSIGVVPQDT-------VLFNDTILY----NIRYAKPSASNE 642
Query: 125 YRIVTEALENVGMSSM-------RQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDE 173
V A + + ++GE LS G+++RV +AR + + +I++DE
Sbjct: 643 E--VYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDE 700
Query: 174 PFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSI 210
+A+D TER + L L I+V+ H +++I
Sbjct: 701 ATSALDTNTERAIQAALARLCANRTTIVVA-HRLSTI 736
>gnl|CDD|34241 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 75.3 bits (185), Expect = 2e-14
Identities = 58/263 (22%), Positives = 110/263 (41%), Gaps = 32/263 (12%)
Query: 9 KGGLELKDISVTYPNGYCA-LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
+G L ++ ++ P L+ ++ + +IG +G+GKSTL + ++G+ P G
Sbjct: 332 QGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG 391
Query: 68 SISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124
S+ + + + L I Y+PQ DV + N R D
Sbjct: 392 SVRLDGADLRQWDREQLGRHIGYLPQ-------------DVELFDGTIAENIARFGEEAD 438
Query: 125 YRIVTEALENVGMSSMRQRQ-------IGE----LSIGQQKRVFLARALAQKSQVIIMDE 173
V EA G+ + R IGE LS GQ++R+ LARAL ++++DE
Sbjct: 439 PEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDE 498
Query: 174 PFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSD 232
P + +D + E + + + ++V H +++ S D+ + L+ + A G +
Sbjct: 499 PNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALAS-VDKILVLQDGRIAAFGPREE 557
Query: 233 IFNEDNIQKTFGAQVSPQSSILN 255
+ + + Q P + +
Sbjct: 558 VLA--KVLRPPPRQAKPGTVVAP 578
>gnl|CDD|73012 cd03253, ABCC_ATM1_transporter, ATM1 is an ABC transporter that is
expressed in the mitochondria. Although the specific
function of ATM1 is unknown, its disruption results in
the accumulation of excess mitochondrial iron, loss of
mitochondrial cytochromes, oxidative damage to
mitochondrial DNA, and decreased levels of cytosolic
heme proteins. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 236
Score = 74.4 bits (183), Expect = 3e-14
Identities = 56/223 (25%), Positives = 105/223 (47%), Gaps = 25/223 (11%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E ++++ Y G L+DV+ IP A++G +G+GKST+ + + + GSI I
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 72 FNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMG-RYKHMNWRRVASNNDYRI 127
Q + L I +PQ +L D + RY + A++ +
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDT-------VLFNDTIGYNIRYGRPD----ATDEEVIE 109
Query: 128 VTEAL----ENVGMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
+A + + +GE LS G+++RV +ARA+ + ++++DE +A+D
Sbjct: 110 AAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALD 169
Query: 180 FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
TERE+ L+ + I++ H +++I + D+ I LK
Sbjct: 170 THTEREIQAALRDVSKGRTTIVI-AHRLSTIVN-ADKIIVLKD 210
>gnl|CDD|35284 KOG0061, KOG0061, KOG0061, Transporter, ABC superfamily (Breast
cancer resistance protein) [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 613
Score = 74.3 bits (182), Expect = 3e-14
Identities = 50/233 (21%), Positives = 97/233 (41%), Gaps = 23/233 (9%)
Query: 12 LELKDISVTYPNGYCA----LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP---L 64
L ++++++ L+ V+ + A++G +G+GK+TL A+ G +
Sbjct: 26 LSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLK 85
Query: 65 DKGSISIFNQTVENALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNN 123
G I + + ++ + Y+ Q D P L V + + + S
Sbjct: 86 LSGEILLNGRPRDSRSFRKISGYVQQD---DVLLPTLTVRETLRF--SALLRLPSSLSKE 140
Query: 124 DYR-IVTEALENVGMSSMRQRQIGE-----LSIGQQKRVFLARALAQKSQVIIMDEPFAA 177
+ R V E + +G+ IG LS G++KRV +A L ++ +DEP +
Sbjct: 141 EKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSG 200
Query: 178 IDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLT 230
+D + +++ LLK L ++ + H PS +F K +L+ G
Sbjct: 201 LDSFSALQVVQLLKRLARSGRTVICTIHQ----PSSELFELFDKLLLLSEGEV 249
>gnl|CDD|33918 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 74.1 bits (182), Expect = 4e-14
Identities = 50/202 (24%), Positives = 90/202 (44%), Gaps = 27/202 (13%)
Query: 9 KGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
G+ L+++S+ P+G L ++N + + G +GAGK++L +A+ GL P G
Sbjct: 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449
Query: 69 ISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKH-MNWRRVASNNDYRI 127
IS+ + ++PQ + G + + + A +
Sbjct: 450 ISMPAD--------SALLFLPQRPYLPQ------------GTLREALCYPNAAPDFSDAE 489
Query: 128 VTEALENVGMSSMRQRQIGE------LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
+ L VG+ + +R E LS G+Q+R+ AR L K + + +DE +A+D +
Sbjct: 490 LVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549
Query: 182 TEREMIFLLKSLLNEDIMILVS 203
TE + LLK L + +I V
Sbjct: 550 TEDRLYQLLKEELPDATVISVG 571
>gnl|CDD|73061 cd03369, ABCC_NFT1, Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (mulrtidrug
resisitance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminas,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate..
Length = 207
Score = 73.8 bits (181), Expect = 5e-14
Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 29/218 (13%)
Query: 10 GGLELKDISVTY-PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
G +E++++SV Y P+ L++V+ + ++G GAGKSTL A+ + ++G
Sbjct: 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK 64
Query: 69 ISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY 125
I I + DL + IPQ + + G + N +D
Sbjct: 65 IEIDGIDISTIPLEDLRSSLTIIPQ------------DPTLFSGTIR-SNLDPFDEYSDE 111
Query: 126 RIVTEALENVGMSSMRQRQIGE-LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
I ++R + G LS GQ++ + LARAL ++ +V+++DE A+ID+ T+
Sbjct: 112 EI---------YGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 185 EMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
+ ++ + IL H + +I D+ + +
Sbjct: 163 LIQKTIREEFT-NSTILTIAHRLRTIID-YDKILVMDA 198
>gnl|CDD|36145 KOG0927, KOG0927, KOG0927, Predicted transporter (ABC superfamily)
[General function prediction only].
Length = 614
Score = 73.1 bits (179), Expect = 7e-14
Identities = 54/228 (23%), Positives = 104/228 (45%), Gaps = 18/228 (7%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
++++ +S+++ G ++DV L + LIG NG+GKST +AI G I
Sbjct: 75 DVKIESLSLSFH-GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHID 133
Query: 71 I--FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMN-----WRRVASNN 123
++ +E + K + A + +T+ L ED+ K + + R+ +
Sbjct: 134 FYLLSREIEPSEKQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMD 193
Query: 124 ----DYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
+ + +S M+ +++ +LS G + R LARAL QK ++++DEP +D
Sbjct: 194 NDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLD 253
Query: 180 FKTEREMIFLLKSLLNE--DIMILVSTHNINSIPSFCDRTIFLKKTVL 225
E I L+ L + I++++ +H+ + + C I L L
Sbjct: 254 L----EAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDNKKL 297
Score = 71.9 bits (176), Expect = 2e-13
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 40/200 (20%)
Query: 15 KDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS---- 70
+++S Y + + +N I ++ AL+G NGAGKSTL + I G + G +S
Sbjct: 393 QNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH 452
Query: 71 ----IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYR 126
+NQ + L D S+++ P + +
Sbjct: 453 NKLPRYNQHLAEQLDLDK-------SSLEFMMPKFPD------------------EKELE 487
Query: 127 IVTEALENVGMSS-MRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTERE 185
+ L G++ + + +LS GQ++RV AR ++ ++++DEP +D +T
Sbjct: 488 EMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIET--- 544
Query: 186 MIFLLKSLLNE--DIMILVS 203
I L +NE ++LVS
Sbjct: 545 -IDALAEAINEFPGGVVLVS 563
>gnl|CDD|73007 cd03248, ABCC_TAP, TAP, the Transporter Associated with Antigen
Processing; TAP is essential for peptide delivery from
the cytosol into the lumen of the endoplasmic reticulum
(ER), where these peptides are loaded on major
histocompatibility complex (MHC) I molecules. Loaded
MHC I leave the ER and display their antigenic cargo on
the cell surface to cytotoxic T cells. Subsequently,
virus-infected or malignantly transformed cells can be
eliminated. TAP belongs to the large family of
ATP-binding cassette (ABC) transporters, which
translocate a vast variety of solutes across membranes..
Length = 226
Score = 71.9 bits (176), Expect = 2e-13
Identities = 52/234 (22%), Positives = 103/234 (44%), Gaps = 39/234 (16%)
Query: 9 KGGLELKDISVTYPN--GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
KG ++ ++++ YP L+DV+ + +TAL+G +G+GKST+ +
Sbjct: 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 67 GSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYR 126
G + + + + + L V ++G+ + R + N Y
Sbjct: 69 GQVLLDGKPIS-----------------QYEHKYLHSKVSLVGQEPVLFARSLQDNIAYG 111
Query: 127 IVTEALENV--------------GMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQV 168
+ + + E V ++S ++GE LS GQ++RV +ARAL + QV
Sbjct: 112 LQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQV 171
Query: 169 IIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
+I+DE +A+D ++E + + E +LV H ++++ D+ + L
Sbjct: 172 LILDEATSALDAESE-QQVQQALYDWPERRTVLVIAHRLSTVER-ADQILVLDG 223
>gnl|CDD|72982 cd03223, ABCD_peroxisomal_ALDP, Peroxisomal ATP-binding cassette
transporter (Pat) is involved in the import of very
long-chain fatty acids (VLCFA) into the peroxisome. The
peroxisomal membrane forms a permeability barrier for a
wide variety of metabolites required for and formed
during fatty acid beta-oxidation. To communicate with
the cytoplasm and mitochondria, peroxisomes need
dedicated proteins to transport such hydrophilic
molecules across their membranes. X-linked
adrenoleukodystrophy (X-ALD) is caused by mutations in
the ALD gene, which encodes ALDP (adrenoleukodystrophy
protein ), a peroxisomal integral membrane protein that
is a member of the ATP-binding cassette (ABC)
transporter protein family. The disease is
characterized by a striking and unpredictable variation
in phenotypic expression. Phenotypes include the
rapidly progressive childhood cerebral form (CCALD), the
milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic)..
Length = 166
Score = 70.6 bits (173), Expect = 4e-13
Identities = 55/214 (25%), Positives = 93/214 (43%), Gaps = 53/214 (24%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+EL+++S+ P+G L+D++ I + G +G GKS+LF+A+ GL P G I +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPI--LVEDVVMMGRYKHMNWRRVASNNDYRIVT 129
DL+ ++PQ P+ L E ++ Y W V
Sbjct: 61 -------PEGEDLL-FLPQRP----YLPLGTLREQLI----YP---WDDV---------- 91
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
LS G+Q+R+ AR L K + + +DE +A+D ++E + L
Sbjct: 92 ------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQL 133
Query: 190 LKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKT 223
LK L + ++S + S+ F DR + L
Sbjct: 134 LKELG----ITVISVGHRPSLWKFHDRVLDLDGE 163
>gnl|CDD|73010 cd03251, ABCC_MsbA, MsbA is an essential ABC transporter, closely
related to eukaryotic MDR proteins. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins..
Length = 234
Score = 70.6 bits (173), Expect = 5e-13
Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 23/211 (10%)
Query: 12 LELKDISVTYPN-GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
+E K+++ YP G L D++L IP AL+G +G+GKSTL I +D G I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTE 130
I V + A L I + F V + + GR A+ + V E
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGR-------PGATREE---VEE 110
Query: 131 ALENVGMSSMRQR-------QIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
A IGE LS GQ++R+ +ARAL + ++I+DE +A+D
Sbjct: 111 AARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALD 170
Query: 180 FKTEREMIFLLKSLLNEDIMILVSTHNINSI 210
++ER + L+ L+ ++ V H +++I
Sbjct: 171 TESERLVQAALERLM-KNRTTFVIAHRLSTI 200
>gnl|CDD|33907 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 70.4 bits (172), Expect = 5e-13
Identities = 53/240 (22%), Positives = 103/240 (42%), Gaps = 17/240 (7%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
++L I+ Y + AL D+ L PE L+G +GAGKS+L + + L G+++I
Sbjct: 3 IQLNGINCFY-GAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 72 FNQTVE----------NALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVAS 121
+ L+ ++ Q W + E+++ ++
Sbjct: 62 AGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNL--WPHLTVQENLIE----APCRVLGLSK 115
Query: 122 NNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
+ + L+ + + R LS GQQ+RV +ARAL + QV++ DEP AA+D +
Sbjct: 116 DQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
Query: 182 TEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQK 241
+++ ++K L I ++ TH + R ++++ + + F E +
Sbjct: 176 ITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTEA 235
>gnl|CDD|73049 cd03290, ABCC_SUR1_N, The SUR domain 1. The sulfonylurea receptor
SUR is an ATP transporter of the ABCC/MRP family with
tandem ATPase binding domains. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity..
Length = 218
Score = 68.6 bits (167), Expect = 2e-12
Identities = 55/209 (26%), Positives = 101/209 (48%), Gaps = 28/209 (13%)
Query: 20 TYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENA 79
++ +G L ++N+ IP +T ++G G GKS+L AI+G + +G + N+
Sbjct: 9 SWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEP 68
Query: 80 LKADL-------IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEAL 132
+AY Q W VE+ + G N +R Y+ VT+A
Sbjct: 69 SFEATRSRNRYSVAYAAQKP---WLLNATVEENITFG--SPFNKQR------YKAVTDAC 117
Query: 133 E---NVGMSSM-RQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
++ + Q +IGE LS GQ++R+ +ARAL Q + ++ +D+PF+A+D
Sbjct: 118 SLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSD 177
Query: 185 EMI--FLLKSLLNEDIMILVSTHNINSIP 211
++ +LK L ++ +++ TH + +P
Sbjct: 178 HLMQEGILKFLQDDKRTLVLVTHKLQYLP 206
>gnl|CDD|34242 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 67.3 bits (164), Expect = 4e-12
Identities = 50/201 (24%), Positives = 95/201 (47%), Gaps = 20/201 (9%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADL--- 84
L +++L + A+ G +G GKSTL + + LI G++ + V + LK +
Sbjct: 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDV-STLKPEAYRQ 77
Query: 85 -IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGM-SSMRQ 142
++Y QT ++ F VED ++ W+ D + L + S+
Sbjct: 78 QVSYCAQTPAL---FGDTVEDNLI------FPWQIRNRRPDRAAALDLLARFALPDSILT 128
Query: 143 RQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER---EMIFLLKSLLNEDIM 199
+ I ELS G+++R+ L R L +++++DE +A+D +R EMI + + +++
Sbjct: 129 KNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIH--RYVREQNVA 186
Query: 200 ILVSTHNINSIPSFCDRTIFL 220
+L TH+ + D+ I L
Sbjct: 187 VLWITHDKDQAIRHADKVITL 207
>gnl|CDD|35283 KOG0060, KOG0060, KOG0060, Long-chain acyl-CoA transporter, ABC
superfamily (involved in peroxisome organization and
biogenesis) [Lipid transport and metabolism, General
function prediction only].
Length = 659
Score = 66.5 bits (162), Expect = 9e-12
Identities = 45/194 (23%), Positives = 87/194 (44%), Gaps = 23/194 (11%)
Query: 12 LELKDISVTYPN-GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
+E +++S++ P G +E+++L +P + G +G GK++L + + GL P G +
Sbjct: 434 IEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL- 492
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTE 130
+ DL ++PQ + T L + V+ + + AS+ D +
Sbjct: 493 ---TKPTDGGPKDLF-FLPQRPYM--TLGTLRDQVIYPLK-AEDMDSKSASDED---ILR 542
Query: 131 ALENVGMSSMRQRQIG-----------ELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
LENV + + +R+ G LS G+Q+R+ AR K + I+DE +A+
Sbjct: 543 ILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVT 602
Query: 180 FKTEREMIFLLKSL 193
E + + +
Sbjct: 603 EDVEGALYRKCREM 616
>gnl|CDD|34233 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 66.1 bits (161), Expect = 1e-11
Identities = 66/266 (24%), Positives = 116/266 (43%), Gaps = 42/266 (15%)
Query: 7 STKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
+ + LE++D+ Y + L+ V+L + ++IG +G+GKST + I L
Sbjct: 2 AAENALEVEDLHKRY-GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSA 60
Query: 67 GSISIFNQTVENALKAD----LIAYIP-QTESID------------WTFPILVEDVV--- 106
GSI + + + LK D L Q + + W+ ++E+V+
Sbjct: 61 GSIRVNGEEI--RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAP 118
Query: 107 --MMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQ 164
++G K + Y L VG++ LS GQQ+RV +ARALA
Sbjct: 119 VHVLGVSKA---EAIERAEKY------LAKVGIAEKADAYPAHLSGGQQQRVAIARALAM 169
Query: 165 KSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTV 224
+ +V++ DEP +A+D + E++ +++ L E ++V TH + IFL +
Sbjct: 170 EPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGK 229
Query: 225 LASGLTSDIFNEDNIQKTFGAQVSPQ 250
I E ++ FG SP+
Sbjct: 230 --------IEEEGPPEQVFGNPQSPR 247
>gnl|CDD|33892 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 65.8 bits (160), Expect = 1e-11
Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 27/215 (12%)
Query: 10 GGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSI 69
G L LK++S+ P G C L +VN I + I L+G +G GKSTL ++G +
Sbjct: 1 GMLCLKNVSLRLP-GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ---- 55
Query: 70 SIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMN-WRRVA-------- 120
F+ T E L + +P + IL +D ++ + H++ + +
Sbjct: 56 --FSCTGELWLNEQRLDMLPAAQR---QIGILFQDALL---FPHLSVGQNLLFALPATLK 107
Query: 121 SNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDF 180
N ALE G+ + LS GQ+ RV L RAL + + +++DEPF+ +D
Sbjct: 108 GNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
Query: 181 KTE---REMIFLLKSLLNEDIMILVSTHNINSIPS 212
R+ +F + I + TH++ +P+
Sbjct: 168 ALRDQFRQWVF--SEVRAAGIPTVQVTHDLQDVPA 200
>gnl|CDD|35281 KOG0058, KOG0058, KOG0058, Peptide exporter, ABC superfamily
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 716
Score = 65.0 bits (158), Expect = 2e-11
Identities = 51/217 (23%), Positives = 95/217 (43%), Gaps = 28/217 (12%)
Query: 9 KGGLELKDISVTYPN--GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
+G +E +D+S YP L++++ I + AL+G +G+GKST+ ++
Sbjct: 463 QGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTS 522
Query: 67 GSISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNN 123
G I + + + L I + Q E V+ G + + +
Sbjct: 523 GRILLDGVPISDINHKYLRRKIGLVGQ------------EPVLFSGSIRENIAYGLDNAT 570
Query: 124 DYRIVTEA-LENV-----GMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDE 173
D I A + N +GE LS GQ++R+ +ARAL + +V+I+DE
Sbjct: 571 DEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDE 630
Query: 174 PFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSI 210
+A+D ++E + L L+ +LV H ++++
Sbjct: 631 ATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLSTV 666
>gnl|CDD|72976 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multiprotein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet..
Length = 200
Score = 64.3 bits (157), Expect = 3e-11
Identities = 54/204 (26%), Positives = 86/204 (42%), Gaps = 50/204 (24%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL--IPLDKGSI 69
LE+KD+ V+ G L+ VNL I + + AL+G NG+GKSTL + IMG + +G I
Sbjct: 1 LEIKDLHVSV-GGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI 59
Query: 70 SIFNQTVENALKADLIAYIPQTES------IDWTFPILVEDVVMMGRYKHMNWRRVASNN 123
K + I +P E + + +P + V N
Sbjct: 60 ---------LFKGEDITDLPPEERARLGIFLAFQYPPEIPGV---------------KNA 95
Query: 124 DY-RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
D+ R V N G S G++KR + + L + + I+DEP + +D
Sbjct: 96 DFLRYV-----NEGFSG-----------GEKKRNEILQLLLLEPDLAILDEPDSGLDIDA 139
Query: 183 EREMIFLLKSLLNEDIMILVSTHN 206
R + ++ L E +L+ TH
Sbjct: 140 LRLVAEVINKLREEGKSVLIITHY 163
>gnl|CDD|73008 cd03249, ABC_MTABC3_MDL1_MDL2, MTABC3 (also known as ABCB6) is a
mitochondrial ATP-binding cassette protein involved in
iron homeostasis and one of four ABC transporters
expressed in the mitochondrial inner membrane, the other
three being MDL1(ABC7), MDL2, and ATM1. In fact, the
yeast MDL1 (multidrug resistance-like protein 1) and
MDL2 (multidrug resistance-like protein 2) transporters
are also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another..
Length = 238
Score = 63.6 bits (155), Expect = 5e-11
Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 15/219 (6%)
Query: 12 LELKDISVTYPN--GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSI 69
+E K++S YP+ L+ ++L IP AL+G +G GKST+ + G I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 70 SIFNQTVEN-ALKA--DLIAYIPQTESIDWTFPILVEDVVMMGRYK---HMNWRRVASNN 123
+ + + L+ I + Q + F + + + G+ N
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVL---FDGTIAENIRYGKPDATDEEVEEAAKKAN 117
Query: 124 DYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
+ + L + G ++ + +LS GQ++R+ +ARAL + +++++DE +A+D ++E
Sbjct: 118 IHDFIMS-LPD-GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 184 REMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
+ + L + + +V H +++I D L+
Sbjct: 176 KLVQEALDRAM-KGRTTIVIAHRLSTI-RNADLIAVLQN 212
>gnl|CDD|72996 cd03237, ABC_RNaseL_inhibitor_domain2, The ATPase domain 2 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity of more than 48%. The high degree of
evolutionary conservation suggests that RLI performs a
central role in archaeal and eukaryotic physiology..
Length = 246
Score = 63.4 bits (154), Expect = 7e-11
Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 28/189 (14%)
Query: 35 IPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESI 94
I E+ + ++G NG GK+T + + G++ D+G I I TV +Y PQ
Sbjct: 22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV---------SYKPQYIKA 72
Query: 95 DWTFPILVEDVVM---MGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIG 151
D + V D++ Y H ++ TE + + + + R++ ELS G
Sbjct: 73 D--YEGTVRDLLSSITKDFYTHPYFK-----------TEIAKPLQIEQILDREVPELSGG 119
Query: 152 QQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI--FLLKSLLNEDIMILVSTHNINS 209
+ +RV +A L++ + + ++DEP A +D + +R M + + N + V H+I
Sbjct: 120 ELQRVAIAACLSKDADIYLLDEPSAYLDVE-QRLMASKVIRRFAENNEKTAFVVEHDIIM 178
Query: 210 IPSFCDRTI 218
I DR I
Sbjct: 179 IDYLADRLI 187
>gnl|CDD|32537 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 63.1 bits (153), Expect = 8e-11
Identities = 48/183 (26%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
L ++NL I + A++G +GAGK+TL + I+G + K + A
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSA 457
Query: 87 YIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSS--MRQRQ 144
IP ++ ++E + R D E L G+S + +R+
Sbjct: 458 LIPGEYEPEFGEVTILEHL-----------RSKTG--DLNAAVEILNRAGLSDAVLYRRK 504
Query: 145 IGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIMILVS 203
ELS GQ++R LA+ LA++ V+++DE A +D T + + L E I ++V
Sbjct: 505 FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564
Query: 204 THN 206
TH
Sbjct: 565 THR 567
>gnl|CDD|33909 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 62.7 bits (152), Expect = 1e-10
Identities = 57/237 (24%), Positives = 107/237 (45%), Gaps = 17/237 (7%)
Query: 12 LELKDISVTY--------PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP 63
LE++++S T+ A++ V+ + E A+IG NG+GKSTL + + G+I
Sbjct: 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 64 LDKGSISIFNQTVEN---ALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVA 120
G I I + + + ++ I I Q + + + ++ + +
Sbjct: 65 PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQ 124
Query: 121 SNNDYRIVTEALENVGM-SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
+ + E L VG+ L+ GQ++RV LARAL + ++II DE A++D
Sbjct: 125 RR---KQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLD 181
Query: 180 FKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIF 234
++I L+ L + I + T +I I D+ + + + V+ G T+D+
Sbjct: 182 MSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
>gnl|CDD|35288 KOG0065, KOG0065, KOG0065, Pleiotropic drug resistance proteins
(PDR1-15), ABC superfamily [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 1391
Score = 62.6 bits (152), Expect = 1e-10
Identities = 48/211 (22%), Positives = 86/211 (40%), Gaps = 27/211 (12%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAI-----MGLIPLDKGSISIFNQTVENALKA 82
L +V+ +TAL+G +GAGK+TL + G I +G I I + A
Sbjct: 807 LNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYI---EGDILISGFPKDQETFA 863
Query: 83 DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND----YRIVTEALENVGMS 138
+ Y+ Q I ++ + + R+ Y V E +E + +
Sbjct: 864 RVSGYVEQQ-------DIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELK 916
Query: 139 SMRQRQIGE----LSIGQQKRVFLARALAQKSQVII-MDEPFAAIDFKTEREMIFLLKSL 193
+G LS Q+KR+ + L I+ +DEP + +D + ++ L+ L
Sbjct: 917 EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKL 976
Query: 194 LNEDIMILVSTH--NINSIPSFCDRTIFLKK 222
+ IL + H +I+ +F D + LK+
Sbjct: 977 ADTGQTILCTIHQPSIDIFEAF-DELLLLKR 1006
Score = 47.6 bits (113), Expect = 4e-06
Identities = 45/217 (20%), Positives = 84/217 (38%), Gaps = 25/217 (11%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP---LDKGSISIFNQTVENALKADL 84
L+D++ I +T ++G G+GK+TL +A+ G + G I+ ++ +
Sbjct: 131 LKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKT 190
Query: 85 IAYIPQTESIDWTFPILV--EDVVMMGRYKHMNWRRVAS----NNDYRIVTEALENVGMS 138
+AY + D FP L E + R K R + L+ +G+
Sbjct: 191 VAYNSEQ---DVHFPELTVRETLDFAARCK-GPGSRYDEVSRREKLAAMTDYLLKILGLD 246
Query: 139 SMRQRQIGE-----LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSL 193
+G +S G++KRV + L + ++ DE +D T ++I L+ L
Sbjct: 247 HCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQL 306
Query: 194 LNEDIMILVSTHNINSIPSFCDRTIFL--KKTVLASG 228
+ + + SI L +L+ G
Sbjct: 307 AH-----ITGATALVSILQPSPEIYDLFDDVILLSEG 338
>gnl|CDD|73011 cd03252, ABCC_Hemolysin, The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy..
Length = 237
Score = 61.1 bits (148), Expect = 3e-10
Identities = 51/221 (23%), Positives = 109/221 (49%), Gaps = 20/221 (9%)
Query: 12 LELKDISVTY-PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
+ + + Y P+G L++++L I + ++G +G+GKSTL + I + G +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 71 IFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRV------AS 121
+ + A A L + + Q + F + D + + M+ RV A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVL---FNRSIRDNIALAD-PGMSMERVIEAAKLAG 116
Query: 122 NNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
+D+ ++E E G ++ Q LS GQ++R+ +ARAL +++I DE +A+D++
Sbjct: 117 AHDF--ISELPE--GYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYE 172
Query: 182 TEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
+E ++ + + +I+++ H ++++ + DR I ++K
Sbjct: 173 SEHAIMRNMHDICAGRTVIIIA-HRLSTVKN-ADRIIVMEK 211
>gnl|CDD|35285 KOG0062, KOG0062, KOG0062, ATPase component of ABC transporters
with duplicated ATPase domains/Translation elongation
factor EF-3b [Amino acid transport and metabolism,
Translation, ribosomal structure and biogenesis].
Length = 582
Score = 58.4 bits (141), Expect = 2e-09
Identities = 46/179 (25%), Positives = 74/179 (41%), Gaps = 22/179 (12%)
Query: 43 LIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILV 102
L+G NG GKSTL +AI G +S F+ VE ++ D + D
Sbjct: 111 LVGRNGIGKSTLLRAIA------NGQVSGFH--VEQEVRGDDTEALQSVLESD----TER 158
Query: 103 EDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSS-MRQRQIGELSIGQQKRVFLARA 161
D + + I + L +G + M+ + LS G + R+ LARA
Sbjct: 159 LDFLAEEKELLAGLTLEE------IYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARA 212
Query: 162 LAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
L K ++++DEP +D + +L L I L+ +H+ N + + C I L
Sbjct: 213 LFAKPDLLLLDEPTNHLDV---VAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHL 268
Score = 49.5 bits (118), Expect = 9e-07
Identities = 45/206 (21%), Positives = 84/206 (40%), Gaps = 23/206 (11%)
Query: 12 LELKDISVTY-PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
L + ++ Y P+ Y + + L ++ + +G NG GKSTL + + G + +G +
Sbjct: 363 LRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVG 422
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTE 130
+ L+ I Y Q +D+ V V M + + R
Sbjct: 423 RHPR-----LR---IKYFAQHH-VDF-LDKNVNAVDFM-----EKSFPGKTEEEIR---R 464
Query: 131 ALENVGMSS-MRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
L + G+S + + I LS GQ+ RV A ++++DEP +D + +
Sbjct: 465 HLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKA 524
Query: 190 LKSLLNEDIMILVSTHNINSIPSFCD 215
LK+ +++ +H+ I S C
Sbjct: 525 LKNFNGGVVLV---SHDEEFISSLCK 547
>gnl|CDD|33911 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 58.5 bits (141), Expect = 2e-09
Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 50/234 (21%)
Query: 17 ISVTYPNGYC-ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL------IPLDK--- 66
I G+ A++ V++ + E I L+G +G+GKS + +AI G+ + D+
Sbjct: 11 IEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRF 70
Query: 67 GSISIFNQTVENALK-----ADLIAYIPQT-------------ESI-DWTFPILVEDVVM 107
I + + K +I PQ+ ++I WT+
Sbjct: 71 DDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYK-------- 122
Query: 108 MGRY-KHMNWRRVASNNDYRIVTEALENVGMSSMR---QRQIGELSIGQQKRVFLARALA 163
GR+ + WR+ R E L VG+ + + EL+ G+ ++V +A ALA
Sbjct: 123 -GRWWQRFGWRK-------RRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALA 174
Query: 164 QKSQVIIMDEPFAAIDFKTEREMIFLLKSL-LNEDIMILVSTHNINSIPSFCDR 216
+ +++I DEP +++ T+ ++ LL L N + IL+ +H++ I + D+
Sbjct: 175 NQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADK 228
>gnl|CDD|34240 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 58.4 bits (141), Expect = 2e-09
Identities = 52/199 (26%), Positives = 80/199 (40%), Gaps = 15/199 (7%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
LEL+++ Y + + +NL I + LIG NG+GKSTL + GL G I
Sbjct: 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTE 130
+ + V D S F L+ AS +
Sbjct: 382 LDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------------GPEGKASPQLIEKWLQ 429
Query: 131 ALENVGMSSMRQRQIG--ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
LE +S+ + +LS GQ+KR+ L AL ++ ++++DE A D RE
Sbjct: 430 RLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQ 489
Query: 189 LLKSLLNE-DIMILVSTHN 206
+L LL E I +H+
Sbjct: 490 VLLPLLKEQGKTIFAISHD 508
>gnl|CDD|73048 cd03289, ABCC_CFTR2, The CFTR subfamily domain 2. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 275
Score = 57.7 bits (139), Expect = 4e-09
Identities = 66/287 (22%), Positives = 130/287 (45%), Gaps = 48/287 (16%)
Query: 10 GGLELKDISVTYPN-GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
G + +KD++ Y G LE+++ I L+G G+GKSTL A + L+ + G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GD 59
Query: 69 ISIFNQTVENALKADLIAY--IPQTESIDW--TFPILVEDVVMMGRYKHMNWRRVASNND 124
I I D +++ +P + W F ++ + V + N +D
Sbjct: 60 IQI-----------DGVSWNSVPLQK---WRKAFGVIPQKVFIFSGTFRKNLDPYGKWSD 105
Query: 125 YRIVTEALENVGMSSMRQRQIGE-----------LSIGQQKRVFLARALAQKSQVIIMDE 173
I A E VG+ S+ ++ G+ LS G ++ + LAR++ K++++++DE
Sbjct: 106 EEIWKVA-EEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDE 164
Query: 174 PFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDI 233
P A +D T + + LK D +++S H I ++ C R + +++ + +
Sbjct: 165 PSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIEAMLE-CQRFLVIEE--------NKV 214
Query: 234 FNEDNIQKTFGAQVSPQSSILNESNIQTTFKAEVYPQINSTMCIKKS 280
D+IQK + S ++ I + + +++P+ NS+ +K
Sbjct: 215 RQYDSIQKLLN-----EKSHFKQA-ISPSDRLKLFPRRNSSKSKRKP 255
>gnl|CDD|72980 cd03221, ABCF_EF-3, ABCF_EF-3 Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA
ternary complex to the ribosomal A site by facilitated
release of the deacylated tRNA from the E site. The
reaction requires ATP hydrolysis. EF-3 contains two
ATP nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions..
Length = 144
Score = 57.4 bits (139), Expect = 4e-09
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+EL+++S TY L+D++L I L+G NGAGKSTL + I G + D+G ++
Sbjct: 1 IELENLSKTYGGKLL-LKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTW 59
Query: 72 FNQTVENALKADLIAYIPQ 90
+ I Y Q
Sbjct: 60 GSTVK--------IGYFEQ 70
Score = 45.1 bits (107), Expect = 2e-05
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 148 LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNI 207
LS G++ R+ LA+ L + ++++DEP +D ++ + LK +ILVS H+
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVS-HDR 127
Query: 208 NSIPSFCDRTIFLKK 222
+ + I L+
Sbjct: 128 YFLDQVATKIIELED 142
>gnl|CDD|31438 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 56.0 bits (135), Expect = 1e-08
Identities = 56/210 (26%), Positives = 100/210 (47%), Gaps = 29/210 (13%)
Query: 16 DISVTYPNGYCALEDVNL-----FIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
D V YP+ D L I + + ++G NG GK+T + + G+I D+GS
Sbjct: 340 DTLVEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEE 399
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTE 130
++Y PQ S D + VED++ + R A + Y TE
Sbjct: 400 DLK-----------VSYKPQYISPD--YDGTVEDLLR-------SAIRSAFGSSY-FKTE 438
Query: 131 ALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI--F 188
++ + + + +R + ELS G+ +RV +A AL++++ + ++DEP A +D + +R ++
Sbjct: 439 IVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVE-QRIIVAKV 497
Query: 189 LLKSLLNEDIMILVSTHNINSIPSFCDRTI 218
+ + + N + LV H+I I DR I
Sbjct: 498 IRRFIENNEKTALVVDHDIYMIDYVSDRLI 527
Score = 51.4 bits (123), Expect = 3e-07
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 21/189 (11%)
Query: 32 NLFIPE-NTITALIGLNGAGKSTLFQAIMG-LIPLDKGSISIFNQTVENALKADLIAYIP 89
L P + ++G NG GKST + + G L P ++ + ++I
Sbjct: 93 RLPTPRPGKVVGILGPNGIGKSTALKILAGELKP----NLGRYEDPPS---WDEVIKRFR 145
Query: 90 QTESIDWTFPILVED---VVMMGRYKHMNWRRVA--------SNNDYRIVTEALENVGMS 138
TE ++ F L E V +Y + + V ++ E +E +G+
Sbjct: 146 GTELQNY-FKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLE 204
Query: 139 SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDI 198
++ R + ELS G+ +RV +A AL + + V DEP + +D + +++ L +
Sbjct: 205 NVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGK 264
Query: 199 MILVSTHNI 207
++V H++
Sbjct: 265 YVIVVEHDL 273
>gnl|CDD|73050 cd03291, ABCC_CFTR1, The CFTR subfamily domain 1. The cystic
fibrosis transmembrane regulator (CFTR), the product of
the gene mutated in patients with cystic fibrosis, has
adapted the ABC transporter structural motif to form a
tightly regulated anion channel at the apical surface of
many epithelia. Use of the term assembly of a
functional ion channel implies the coming together of
subunits, or at least smaller not-yet functional
components of the active whole. In fact, on the basis
of current knowledge only the CFTR polypeptide itself is
required to form an ATP- and protein kinase A-dependent
low-conductance chloride channel of the type present in
the apical membrane of many epithelial cells. CFTR
displays the typical organization (IM-ABC)2 and carries
a characteristic hydrophilic R-domain that separates
IM1-ABC1 from IM2-ABC2..
Length = 282
Score = 56.2 bits (135), Expect = 1e-08
Identities = 38/160 (23%), Positives = 74/160 (46%), Gaps = 15/160 (9%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAY 87
L+++NL I + + A+ G G+GK++L I+G + +G I + I++
Sbjct: 53 LKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIK----------HSGRISF 102
Query: 88 IPQTESIDWTFPILVEDVVMMG-RYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIG 146
Q W P +++ ++ G Y ++ V + + + I
Sbjct: 103 SSQFS---WIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGI- 158
Query: 147 ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
LS GQ+ R+ LARA+ + + + ++D PF +D TE+E+
Sbjct: 159 TLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEI 198
>gnl|CDD|33864 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 55.7 bits (134), Expect = 1e-08
Identities = 57/255 (22%), Positives = 110/255 (43%), Gaps = 37/255 (14%)
Query: 6 ASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD 65
K L + +S Y DV+ + + ++G +G+GK+TL + I G + D
Sbjct: 1 MMDKPLLSVSGLSKLY-GPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD 59
Query: 66 KGSISIFNQTVENALKADLIAYIPQTES-----IDWTF----PI------------LVED 104
G+++ + + DL + + E +W F P + E
Sbjct: 60 AGTVTYRMRDGQPR---DLYT-MSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGER 115
Query: 105 VVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMR-QRQIGELSIGQQKRVFLARALA 163
++ +G + N R A + LE V + R S G Q+R+ +AR L
Sbjct: 116 LMAIGARHYGNIRAEAQ--------DWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLV 167
Query: 164 QKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK 222
+ +++ MDEP +D + ++ LL+ L+ E + +++ TH++ DR + +K+
Sbjct: 168 TRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQ 227
Query: 223 -TVLASGLTSDIFNE 236
V+ SGLT + ++
Sbjct: 228 GQVVESGLTDRVLDD 242
>gnl|CDD|72991 cd03232, ABC_PDR_domain2, The pleiotropic drug resistance-like
(PDR) family of ATP-binding cassette (ABC) transporters.
PDR is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 192
Score = 54.8 bits (132), Expect = 2e-08
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 45/201 (22%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAI-----MGLIPLDKGSISIFNQTVENALKA 82
L +++ ++ T+TAL+G +GAGK+TL + G+I G I I + ++
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVI---TGEILINGRPLDKNF-Q 78
Query: 83 DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQ 142
Y+ Q D P L V EAL S++
Sbjct: 79 RSTGYVEQ---QDVHSPNLT-------------------------VREALR---FSAL-- 105
Query: 143 RQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILV 202
+ LS+ Q+KR+ + LA K ++ +DEP + +D + ++ LK L + IL
Sbjct: 106 --LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILC 163
Query: 203 STHNIN-SIPSFCDRTIFLKK 222
+ H + SI DR + LK+
Sbjct: 164 TIHQPSASIFEKFDRLLLLKR 184
>gnl|CDD|34862 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 54.5 bits (131), Expect = 3e-08
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 29/208 (13%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADL--- 84
L ++ IP A++G +GAGKST+ + + ++ GSI+I Q + + + L
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338
Query: 85 IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALEN---------- 134
I +PQ D V+ N + + V A E
Sbjct: 339 IGIVPQ-------------DTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL 385
Query: 135 -VGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSL 193
G + + +LS G+++RV +AR + + ++I+DE +A+D TE+ + L+
Sbjct: 386 PEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALR-E 444
Query: 194 LNEDIMILVSTHNINSIPSFCDRTIFLK 221
++ LV H +++I D I L
Sbjct: 445 VSAGRTTLVIAHRLSTIID-ADEIIVLD 471
>gnl|CDD|35287 KOG0064, KOG0064, KOG0064, Peroxisomal long-chain acyl-CoA
transporter, ABC superfamily [Lipid transport and
metabolism].
Length = 728
Score = 53.0 bits (127), Expect = 1e-07
Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 26/204 (12%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
G+ L++I V P G + + I + G NG GKS+LF+ + GL P+ G +S
Sbjct: 481 GIILENIPVITPAGDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLS 540
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTE 130
I I YIPQ + + L + ++ + M R+ ++ D +
Sbjct: 541 IPRPNN--------IFYIPQRPYM--SGGTLRDQIIYPDSSEQMK-RKGYTDQDLEAI-- 587
Query: 131 ALENVGMSSMRQRQIG---------ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
L+ V + + QR+ G LS G+++R+ +AR + + ++DE +A+
Sbjct: 588 -LDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSID 646
Query: 182 TEREMIFLLKSLLNEDIMILVSTH 205
E ++ K + I +L TH
Sbjct: 647 VEGKIFQAAK---DAGISLLSITH 667
>gnl|CDD|73047 cd03288, ABCC_SUR2, The SUR domain 2. The sulfonylurea receptor
SUR is an ATP binding cassette (ABC) protein of the
ABCC/MRP family. Unlike other ABC proteins, it has no
intrinsic transport function, neither active nor
passive, but associates with the potassium channel
proteins Kir6.1 or Kir6.2 to form the ATP-sensitive
potassium (K(ATP)) channel. Within the channel complex,
SUR serves as a regulatory subunit that fine-tunes the
gating of Kir6.x in response to alterations in cellular
metabolism. It constitutes a major pharmaceutical
target as it binds numerous drugs, K(ATP) channel
openers and blockers, capable of up- or down-regulating
channel activity..
Length = 257
Score = 50.8 bits (121), Expect = 5e-07
Identities = 58/236 (24%), Positives = 101/236 (42%), Gaps = 42/236 (17%)
Query: 10 GGLELKDISVTYPNGY-CALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
G +++ D+ V Y N L+ V +I + G G+GKS+L A ++ + G
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 69 ISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
I I I+ +P ++ I+++D ++ N D R+
Sbjct: 78 IVI---------DGIDISKLP-LHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRL- 126
Query: 129 TEALENVGMSSMRQRQIGEL-----------SIGQQKRVFLARALAQKSQVIIMDEPFAA 177
EALE + +M + G L S+GQ++ LARA +KS ++IMDE A+
Sbjct: 127 WEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATAS 186
Query: 178 IDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDI 233
ID TE ++L + +M +F DRT+ +++ L +D+
Sbjct: 187 IDMATE--------NILQKVVMT-----------AFADRTVVTIAHRVSTILDADL 223
>gnl|CDD|35286 KOG0063, KOG0063, KOG0063, RNAse L inhibitor, ABC superfamily [RNA
processing and modification].
Length = 592
Score = 48.4 bits (115), Expect = 2e-06
Identities = 46/187 (24%), Positives = 83/187 (44%), Gaps = 34/187 (18%)
Query: 40 ITALIGLNGAGKSTLFQAIMGLI---------PLDKGSI----------SIFNQTVENAL 80
+ L+G NG GKST + + G P D I + F + +E+ L
Sbjct: 102 VLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNL 161
Query: 81 KADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSM 140
KA I + + +D P V+ V R ++ V + L+ ++++
Sbjct: 162 KA-----IIKPQYVD-QIPRAVKGTV------GSLLDRKDERDNKEEVCDQLD---LNNL 206
Query: 141 RQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMI 200
R++ +LS G+ +R +A QK+ V + DEP + +D K + ++SL+N D I
Sbjct: 207 LDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYI 266
Query: 201 LVSTHNI 207
+V H++
Sbjct: 267 IVVEHDL 273
Score = 43.0 bits (101), Expect = 8e-05
Identities = 32/141 (22%), Positives = 63/141 (44%), Gaps = 22/141 (15%)
Query: 40 ITALIGLNGAGKSTLFQAIMGLIPLDKGS-ISIFNQTVENALKADLIAYIPQTESIDWTF 98
I ++G NG GK+T + + G + D+G I + N ++Y PQ I
Sbjct: 369 IIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLN-----------VSYKPQK--ISPKR 415
Query: 99 PILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFL 158
V ++ + + V + ++ + + ++ +++ LS G+ +RV L
Sbjct: 416 EGTVRQLLH-----TKIR---DAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVAL 467
Query: 159 ARALAQKSQVIIMDEPFAAID 179
A L + + V ++DEP A +D
Sbjct: 468 ALCLGKPADVYLIDEPSAYLD 488
>gnl|CDD|72995 cd03236, ABC_RNaseL_inhibitor_domain1, The ATPase domain 1 of RNase
L inhibitor. The ABC ATPase, RNase L inhibitor (RLI),
is a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI s are not transport proteins and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLIs have an N-terminal
Fe-S domain and two nucleotide binding domains which are
arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 255
Score = 46.8 bits (111), Expect = 7e-06
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 20/180 (11%)
Query: 40 ITALIGLNGAGKSTLFQAIMG-LIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTF 98
+ L+G NG GKST + + G L P + + +++ +E ++ F
Sbjct: 28 VLGLVGPNGIGKSTALKILAGKLKP-------NLGKFDDPPDWDEILDEFRGSELQNY-F 79
Query: 99 PILVED---VVMMGRYKHMNWRRVASN--------NDYRIVTEALENVGMSSMRQRQIGE 147
L+E V++ +Y + + V ++ + E ++ + + + R I +
Sbjct: 80 TKLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQ 139
Query: 148 LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNI 207
LS G+ +RV +A ALA+ + DEP + +D K L++ L +D +LV H++
Sbjct: 140 LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDL 199
>gnl|CDD|35289 KOG0066, KOG0066, KOG0066, eIF2-interacting protein ABC50 (ABC
superfamily) [Translation, ribosomal structure and
biogenesis].
Length = 807
Score = 46.2 bits (109), Expect = 1e-05
Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 36/180 (20%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS--- 68
L L D++ YP + ++ I ++ A++G NG GKSTL + ++G + + G
Sbjct: 587 LGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRK 646
Query: 69 -----ISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNN 123
I F+Q AL + E + F N
Sbjct: 647 NHRLRIGWFDQHANEALNGEETP----VEYLQRKF-----------------------NL 679
Query: 124 DYRIVTEALENVGMSSMRQR-QIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
Y+ + L G++S +I +LS GQ+ RV LA V+I+DEP +D ++
Sbjct: 680 PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIES 739
Score = 33.9 bits (77), Expect = 0.046
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Query: 132 LENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLL 190
L +G S M++R + S G + RV LARAL + ++++DEP +D +I+L
Sbjct: 396 LAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNA---VIWLD 452
Query: 191 KSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
L +L+ +H+ + S C I L
Sbjct: 453 NYLQGWKKTLLIVSHDQGFLDSVCTDIIHL 482
>gnl|CDD|37566 KOG2355, KOG2355, KOG2355, Predicted ABC-type transport, ATPase
component/CCR4 associated factor [General function
prediction only, Transcription].
Length = 291
Score = 45.0 bits (106), Expect = 2e-05
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 2 KTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG 60
K A A + +E+ + Y D NL +P + L+G NGAGK+TL + + G
Sbjct: 4 KEAEAVSDFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSG 62
>gnl|CDD|72997 cd03238, ABC_UvrA, The excision repair protein UvrA; Nucleotide
excision repair in eubacteria is a process that repairs
DNA damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins, and UvrB having one ATP binding
site that is structurally related to that of helicases..
Length = 176
Score = 44.9 bits (106), Expect = 3e-05
Identities = 35/197 (17%), Positives = 80/197 (40%), Gaps = 48/197 (24%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
L+++++ IP N + + G++G+GKSTL + + L + L
Sbjct: 10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEG-------------LYASGKARLISFLPK 56
Query: 87 YIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMR-QRQI 145
+ ++ + + + L +VG+ + +++
Sbjct: 57 FSRNK-------------LIFIDQLQ------------------FLIDVGLGYLTLGQKL 85
Query: 146 GELSIGQQKRVFLARALAQKSQ--VIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVS 203
LS G+ +RV LA L + + I+DEP + + +++ ++K L++ +++
Sbjct: 86 STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILI 145
Query: 204 THNINSIPSFCDRTIFL 220
HN++ + S D I
Sbjct: 146 EHNLDVL-SSADWIIDF 161
>gnl|CDD|177053 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 44.6 bits (106), Expect = 3e-05
Identities = 52/208 (25%), Positives = 96/208 (46%), Gaps = 20/208 (9%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG--LIPLDKGSI 69
LE+K++ + N L+ +NL I + I A++G NG+GKSTL + I G + +G I
Sbjct: 8 LEIKNLHASV-NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI 66
Query: 70 SIFNQTVENALKADLIAYIPQTESIDWTF--PILV-----EDVVMMG---RYKHMNWRRV 119
+++ L+ + A++ I F PI + D + + + K +
Sbjct: 67 LFKGESI-LDLEPEERAHL----GIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPEL 121
Query: 120 ASNNDYRIVTEALENVGMS-SMRQRQIGE-LSIGQQKRVFLARALAQKSQVIIMDEPFAA 177
I+ E L+ VGM S R + E S G++KR + + S++ I+DE +
Sbjct: 122 DPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSG 181
Query: 178 IDFKTEREMIFLLKSLLNEDIMILVSTH 205
+D + + + L+ + I++ TH
Sbjct: 182 LDIDALKIIAEGINKLMTSENSIILITH 209
>gnl|CDD|34390 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 43.4 bits (102), Expect = 8e-05
Identities = 43/204 (21%), Positives = 81/204 (39%), Gaps = 33/204 (16%)
Query: 2 KTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL 61
KT +GG+ L L +V+L + L G +G+GKSTL +++
Sbjct: 12 KTFTLHQQGGVRLP-----------VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYAN 60
Query: 62 IPLDKGSISIFNQTVENALKADLIAYIPQT------ESIDW------TFP-ILVEDVVMM 108
D+G I + ++ DL+ P+ +I + P + DVV
Sbjct: 61 YLPDEGQILVRHE----GEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVA- 115
Query: 109 GRYKHMNWRRVASNNDYRIVTEALENVGMSS-MRQRQIGELSIGQQKRVFLARALAQKSQ 167
+ + R V + L + + + S G+Q+RV +AR
Sbjct: 116 ---EPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYP 172
Query: 168 VIIMDEPFAAIDFKTEREMIFLLK 191
++++DEP A++D ++ L++
Sbjct: 173 ILLLDEPTASLDATNRAVVVELIR 196
>gnl|CDD|72992 cd03233, ABC_PDR_domain1, The pleiotropic drug resistance (PDR)
family of ATP-binding cassette (ABC) transporters. PDR
is a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide-binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing
proteins..
Length = 202
Score = 43.3 bits (102), Expect = 8e-05
Identities = 34/172 (19%), Positives = 68/172 (39%), Gaps = 36/172 (20%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAY 87
L+D + + + ++G G+G STL +A+ G++S+ N + A
Sbjct: 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTE---GNVSVEGDIHYNGIPYKEFAE 79
Query: 88 IPQTESI-----DWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMR 141
E I D FP L V + +++ N++
Sbjct: 80 KYPGEIIYVSEEDVHFPTLTVRET--------LDFALRCKGNEF---------------- 115
Query: 142 QRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSL 193
+ +S G++KRV +A AL ++ V+ D +D T E++ ++++
Sbjct: 116 ---VRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTM 164
>gnl|CDD|73030 cd03271, ABC_UvrA_II, The excision repair protein UvrA domain II;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 261
Score = 42.1 bits (99), Expect = 2e-04
Identities = 48/226 (21%), Positives = 101/226 (44%), Gaps = 44/226 (19%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKST-----LFQAIMGLIPLDKGSISIFNQTVENALKA 82
L+++++ IP +T + G++G+GKS+ L+ A+ + L K +E
Sbjct: 11 LKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNH-DRIEGLEHI 69
Query: 83 DLIAYIPQT------ESIDWTFPILVEDV----------------VMMGRYKHMNWRRVA 120
D + I Q+ S T+ + +++ + RYK + V
Sbjct: 70 DKVIVIDQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVL 129
Query: 121 S----------NNDYRIVT--EALENVGMSSMRQRQIG-ELSIGQQKRVFLARALAQKSQ 167
N +I + L +VG+ ++ Q LS G+ +R+ LA+ L+++S
Sbjct: 130 DMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRST 189
Query: 168 ---VIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSI 210
+ I+DEP + F ++++ +L+ L+++ ++V HN++ I
Sbjct: 190 GKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVI 235
>gnl|CDD|73029 cd03270, ABC_UvrA_I, The excision repair protein UvrA domain I;
Nucleotide excision repair in eubacteria is a process
that repairs DNA damage by the removal of a 12-13-mer
oligonucleotide containing the lesion. Recognition and
cleavage of the damaged DNA is a multistep ATP-dependent
reaction that requires the UvrA, UvrB, and UvrC
proteins. Both UvrA and UvrB are ATPases, with UvrA
having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases..
Length = 226
Score = 42.1 bits (99), Expect = 2e-04
Identities = 48/203 (23%), Positives = 86/203 (42%), Gaps = 31/203 (15%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTL-FQAIMGLIPLDKG------SISIFNQTVENAL 80
L++V++ IP N + + G++G+GKS+L F I +G S+S + + +
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQM 65
Query: 81 KADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEA--------- 131
P +SI+ P + D R V DY + A
Sbjct: 66 DK------PDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIRERLG 119
Query: 132 -LENVGMSSMR-QRQIGELSIGQQKRVFLARALAQK-SQVI-IMDEPFAAIDFKTEREMI 187
L +VG+ + R LS G+ +R+ LA + + V+ ++DEP + + +I
Sbjct: 120 FLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLI 179
Query: 188 FLLKSLLNEDIMILVSTHNINSI 210
LK L + +LV H+ ++I
Sbjct: 180 ETLKRLRDLGNTVLVVEHDEDTI 202
>gnl|CDD|72999 cd03240, ABC_Rad50, The catalytic domains of Rad50 are similar to
the ATP-binding cassette of ABC transporters, but are
not associated with membrane-spanning domains. The
conserved ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence..
Length = 204
Score = 41.0 bits (96), Expect = 3e-04
Identities = 32/169 (18%), Positives = 62/169 (36%), Gaps = 14/169 (8%)
Query: 40 ITALIGLNGAGKSTLFQAI-MGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTF 98
+T ++G NGAGK+T+ +A+ L + + A LI + F
Sbjct: 24 LTLIVGQNGAGKTTIIEALKYALTG------ELPPNSKGGAHDPKLIREGEVRAQVKLAF 77
Query: 99 PILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFL 158
+ R + V + L+ G S ++ + L I R+ L
Sbjct: 78 ENANGKKYTITRSLAI-LENVIFCHQGESNWPLLDMRGRCSGGEKVLASLII----RLAL 132
Query: 159 ARALAQKSQVIIMDEPFAAID-FKTEREMIFLLKSLLNEDIM-ILVSTH 205
A ++ +DEP +D E + +++ ++ ++V TH
Sbjct: 133 AETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITH 181
>gnl|CDD|73038 cd03279, ABC_sbcCD, SbcCD and other Mre11/Rad50 (MR) complexes are
implicated in the metabolism of DNA ends. They cleave
ends sealed by hairpin structures and are thought to
play a role in removing protein bound to DNA termini..
Length = 213
Score = 40.2 bits (94), Expect = 6e-04
Identities = 37/182 (20%), Positives = 65/182 (35%), Gaps = 30/182 (16%)
Query: 37 ENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTV---ENALKADLIAYIPQTES 93
N + + G GAGKST+ AI + +++ +T + A T
Sbjct: 27 NNGLFLICGPTGAGKSTILDAI---------TYALYGKTPRYGRQENLRSVFAPGEDTAE 77
Query: 94 IDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQ 153
+ +TF +G K+ R + D L R + LS G+
Sbjct: 78 VSFTF--------QLGGKKYRVERSRGLDYDQFTRIVLLPQGEFDRFLARPVSTLSGGET 129
Query: 154 KRVFLARALAQKSQV----------IIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVS 203
L+ ALA + + +DE F +D + + L+ + E+ M+ V
Sbjct: 130 FLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVI 189
Query: 204 TH 205
+H
Sbjct: 190 SH 191
>gnl|CDD|33697 COG3910, COG3910, Predicted ATPase [General function prediction
only].
Length = 233
Score = 39.5 bits (92), Expect = 0.001
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 28/172 (16%)
Query: 40 ITALIGLNGAGKSTLFQAI---MGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDW 96
IT + G NG+GKSTL +AI MG G ++ D + +
Sbjct: 39 ITFITGENGSGKSTLLEAIAAGMGFNAAGGGKNFKGELDASHSALVDYAKLHKRKKPPIG 98
Query: 97 TFPILVEDVVMMGRY--KHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQK 154
F + E + Y + N G S+ GE +
Sbjct: 99 FF-LRAESFYNVASYLDEADGEA----------------NYGGRSLHHMSHGESFL---- 137
Query: 155 RVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHN 206
+F R Q + I+DEP AA+ + E++ +L+ L + I+++TH+
Sbjct: 138 AIFHNRFNGQG--IYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHS 187
>gnl|CDD|30768 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 36.6 bits (84), Expect = 0.007
Identities = 23/89 (25%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 143 RQIGELSIGQQKRVFLARALA--------QKSQVIIMDEPFAAIDFKTEREMIFLLKSLL 194
R I LS G++ LA LA + +++ +DEPF +D + ++ +L+ LL
Sbjct: 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELL 870
Query: 195 NEDIMILVSTHNINSIPSFCDRTIFLKKT 223
++ I++ +H + + D I +KK
Sbjct: 871 SDGRQIIIISH-VEELKERADVRIRVKKD 898
Score = 32.3 bits (73), Expect = 0.13
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 40 ITALIGLNGAGKSTLFQAI 58
I ++G NGAGKS++ AI
Sbjct: 27 IFLIVGPNGAGKSSILDAI 45
>gnl|CDD|30527 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 35.9 bits (83), Expect = 0.012
Identities = 24/85 (28%), Positives = 50/85 (58%), Gaps = 4/85 (4%)
Query: 130 EALENVGMSSMRQRQ-IGELSIGQQKRVFLARALAQKSQ---VIIMDEPFAAIDFKTERE 185
+ L +VG+ ++ Q LS G+ +RV LA+ L+++S + I+DEP + F ++
Sbjct: 804 QTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKK 863
Query: 186 MIFLLKSLLNEDIMILVSTHNINSI 210
++ +L L+++ ++V HN++ I
Sbjct: 864 LLEVLHRLVDKGNTVIVIEHNLDVI 888
Score = 33.2 bits (76), Expect = 0.071
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLI 85
L+++++ IP T + G++G+GKSTL L N T E I
Sbjct: 617 LKNIDVEIPLGVFTCVTGVSGSGKSTLINDT-----LVPALARHLNGTKEEPGPYKKI 669
Score = 32.5 bits (74), Expect = 0.15
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTL 54
L++++L IP N + + GL+G+GKS+L
Sbjct: 16 LKNIDLEIPRNKLVVITGLSGSGKSSL 42
>gnl|CDD|34256 COG4637, COG4637, Predicted ATPase [General function prediction
only].
Length = 373
Score = 33.0 bits (75), Expect = 0.082
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 24 GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQ 74
Y + ++L I + +IG NGAGKS + A+ L +G++ Q
Sbjct: 10 NYRSFRSLDLEIR--RVNVIIGANGAGKSNFYDALRLLADAVRGNLQQALQ 58
>gnl|CDD|72986 cd03227, ABC_Class2, ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterised by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins..
Length = 162
Score = 33.0 bits (75), Expect = 0.086
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 145 IGELSIGQQKRVFLARALA----QKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMI 200
+LS G+++ LA LA + + I+DE +D + + + + L + +
Sbjct: 75 RLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQV 134
Query: 201 LVSTHN 206
+V TH
Sbjct: 135 IVITHL 140
Score = 33.0 bits (75), Expect = 0.090
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 26 CALEDVNLFIPENTITALIGLNGAGKSTLFQAI 58
++ E ++T + G NG+GKST+ AI
Sbjct: 9 SYFVPNDVTFGEGSLTIITGPNGSGKSTILDAI 41
>gnl|CDD|57925 cd01854, YjeQ_engC, YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis)
represents a protein family whose members are broadly
conserved in bacteria and have been shown to be
essential to the growth of E. coli and B. subtilis.
Proteins of the YjeQ family contain all sequence motifs
typical of the vast class of P-loop-containing GTPases,
but show a circular permutation, with a G4-G1-G3 pattern
of motifs as opposed to the regular G1-G3-G4 pattern
seen in most GTPases. All YjeQ family proteins display a
unique domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain. This domain architecture suggests a role for
YjeQ as a regulator of translation..
Length = 287
Score = 32.5 bits (74), Expect = 0.13
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 37 ENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
+ + L+G +G GKSTL A++ + L G IS
Sbjct: 160 KGKTSVLVGQSGVGKSTLINALLPDLDLATGEIS 193
>gnl|CDD|31356 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 32.2 bits (73), Expect = 0.18
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
G + +S +G L ++ IT L+G +G GKSTL A++ + G IS
Sbjct: 141 GYPVLFVSAKNGDGLEELAELL----AGKITVLLGQSGVGKSTLINALLPELNQKTGEIS 196
>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate
dehydrogenase. Shikimate dehydrogenase (DH) is an amino
acid DH family member. Shikimate pathway links
metabolism of carbohydrates to de novo biosynthesis of
aromatic amino acids, quinones and folate. It is
essential in plants, bacteria, and fungi but absent in
mammals, thus making enzymes involved in this pathway
ideal targets for broad spectrum antibiotics and
herbicides. Shikimate DH catalyzes the reduction of
3-hydroshikimate to shikimate using the cofactor NADH.
Amino acid DH-like NAD(P)-binding domains are members of
the Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DHs, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 155
Score = 31.1 bits (71), Expect = 0.31
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 11/84 (13%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
ALE+ + + + ++G GA ++ L L I I N+T+E A L
Sbjct: 9 ALEEAGIELKGKKV-LILGAGGAARA----VAYALAELGAAKIVIVNRTLEKA--KALAE 61
Query: 87 YIPQT----ESIDWTFPILVEDVV 106
+ +D + D++
Sbjct: 62 RFGELGIAIAYLDLEELLAEADLI 85
>gnl|CDD|35241 KOG0018, KOG0018, KOG0018, Structural maintenance of chromosome
protein 1 (sister chromatid cohesion complex Cohesin,
subunit SMC1) [Cell cycle control, cell division,
chromosome partitioning].
Length = 1141
Score = 30.7 bits (69), Expect = 0.45
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 31 VNLFIPENTITALIGLNGAGKSTLFQAIM 59
+ P + TA+IG NG+GKS L AI
Sbjct: 18 HQVIGPFDRFTAIIGPNGSGKSNLMDAIS 46
>gnl|CDD|146027 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 30.6 bits (70), Expect = 0.53
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 17 ISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
+S G L+ L + + L G +G GKSTL A++ + L G IS
Sbjct: 18 VSAKTGEGIEELKP-LL---KGKTSVLAGQSGVGKSTLLNALLPELDLRTGEIS 67
>gnl|CDD|73033 cd03274, ABC_SMC4_euk, Eukaryotic SMC4 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 212
Score = 30.2 bits (68), Expect = 0.57
Identities = 31/153 (20%), Positives = 67/153 (43%), Gaps = 27/153 (17%)
Query: 41 TALIGLNGAGKSTLFQAIMGL-------IPLDKGSISIFNQTVENALKADLIAYIPQTES 93
+A++G NG+GKS + +++ + + K S I N L + S
Sbjct: 28 SAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNL---------DSCS 78
Query: 94 IDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQ-RQIGELSIGQ 152
++ F +++ ++ + ++ +N + I+ +E + + + I LS G+
Sbjct: 79 VEVHFQEIIDKPLLKSKGIDLD------HNRFLILQGEVEQIAQMPKKSWKNISNLSGGE 132
Query: 153 QKRVFLARALA----QKSQVIIMDEPFAAIDFK 181
+ LA A + + + +MDE AA+DF+
Sbjct: 133 KTLSSLALVFALHHYKPTPLYVMDEIDAALDFR 165
>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine
Kinase, Ephrin Receptor A10. Protein Tyrosine Kinase
(PTK) family; Ephrin Receptor (EphR) subfamily; EphA10
receptor; catalytic (c) domain. The PTKc family is part
of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. EphRs
comprise the largest subfamily of receptor tyr kinases
(RTKs). In general, class EphA receptors bind
GPI-anchored ephrin-A ligands. There are ten vertebrate
EphA receptors (EphA1-10), which display promiscuous
interactions with six ephrin-A ligands. EphRs contain an
ephrin binding domain and two fibronectin repeats
extracellularly, a transmembrane segment, and a
cytoplasmic tyr kinase domain. Binding of the ephrin
ligand to EphR requires cell-cell contact since both are
anchored to the plasma membrane. The resulting
downstream signals occur bidirectionally in both
EphR-expressing cells (forward signaling) and
ephrin-expressing cells (reverse signaling). EphA10,
which contains an inactive tyr kinase domain, may
function to attenuate signals of co-clustered active
receptors. EphA10 is mainly expressed in the testis.
Ephrin/EphR interaction results in cell-cell repulsion
or adhesion, making it important in neural development
and plasticity, cell morphogenesis, cell-fate
determination, embryonic development, tissue patterning,
and angiogenesis.
Length = 266
Score = 30.3 bits (68), Expect = 0.69
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 104 DVVMMGRYKHMNWRR----VASNNDYRIVTEALENVGMSSMRQRQIGELSIGQ 152
+ + +G++ H N R + N IVTE + N + S ++ G+L GQ
Sbjct: 56 EALTLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHEGQLVAGQ 108
>gnl|CDD|145545 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain
is found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family
also includes the RecF and RecN proteins that are
involved in DNA metabolism and recombination.
Length = 1162
Score = 29.9 bits (67), Expect = 0.71
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 40 ITALIGLNGAGKSTLFQAI 58
TA++G NG+GKS + AI
Sbjct: 25 FTAIVGPNGSGKSNILDAI 43
>gnl|CDD|133361 cd04161, Arl2l1_Arl13_like, Arl2l1/Arl13 subfamily. Arl2l1
(Arl2-like protein 1) and Arl13 form a subfamily of the
Arf family of small GTPases. Arl2l1 was identified in
human cells during a search for the gene(s) responsible
for Bardet-Biedl syndrome (BBS). Like Arl6, the
identified BBS gene, Arl2l1 is proposed to have
cilia-specific functions. Arl13 is found on the X
chromosome, but its expression has not been confirmed;
it may be a pseudogene.
Length = 167
Score = 30.1 bits (68), Expect = 0.77
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 42 ALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQT 75
+GL+ AGK+TL A+ G IP F T
Sbjct: 3 LTVGLDNAGKTTLVSALQGEIPKKVAPTVGFTPT 36
>gnl|CDD|32443 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 29.9 bits (67), Expect = 0.82
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 16/67 (23%)
Query: 42 ALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDW--TFP 99
AL+G AGKSTLF A+ G + V + L A L P T I+
Sbjct: 196 ALVGYTNAGKSTLFNALTGA-----------DVYVADQLFATL---DPTTRRIELGDGRK 241
Query: 100 ILVEDVV 106
+L+ D V
Sbjct: 242 VLLTDTV 248
>gnl|CDD|72981 cd03222, ABC_RNaseL_inhibitor, The ABC ATPase RNase L inhibitor
(RLI) is a key enzyme in ribosomal biogenesis, formation
of translation preinitiation complexes, and assembly of
HIV capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology..
Length = 177
Score = 29.6 bits (66), Expect = 1.1
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 144 QIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDI-MILV 202
Q +LS G+ +RV +A AL + + + DEP A +D + ++ L E LV
Sbjct: 68 QYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127
Query: 203 STHNINSIPSFCDRTI 218
H++ + DR
Sbjct: 128 VEHDLAVLDYLSDRIH 143
>gnl|CDD|29996 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and
host eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase..
Length = 186
Score = 29.4 bits (66), Expect = 1.1
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 45 GLNGAGKSTLFQAIMGLIPLDKGSISI 71
G G+GK+TL A++ IP D+ I+I
Sbjct: 32 GGTGSGKTTLLNALLAFIPPDERIITI 58
>gnl|CDD|113093 pfam04310, MukB, MukB N-terminal. This family represents the
N-terminal region of MukB, one of a group of bacterial
proteins essential for the movement of nucleoids from
mid-cell towards the cell quarters (i.e. chromosome
partitioning). The structure of the N-terminal domain
consists of an antiparallel six-stranded beta sheet
surrounded by one helix on one side and by five helices
on the other side. It contains an exposed Walker A loop
in an unexpected helix-loop-helix motif (in other
proteins, Walker A motifs generally adopt a P loop
conformation as part of a strand-loop-helix motif
embedded in a conserved topology of alternating helices
and (parallel) beta strands).
Length = 227
Score = 29.2 bits (65), Expect = 1.4
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 23 NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQA-IMGLIP 63
NG+ A F + +T L G NGAGKST A I LIP
Sbjct: 16 NGFFA----RTFDIDELVTTLSGGNGAGKSTTMAAFITALIP 53
>gnl|CDD|73034 cd03275, ABC_SMC1_euk, Eukaryotic SMC1 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in
the single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B'
motif, and a motif with homology to the signature
sequence of the ATP-binding cassette (ABC) family of
ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18)..
Length = 247
Score = 29.0 bits (65), Expect = 1.4
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 41 TALIGLNGAGKSTLFQAIM 59
T +IG NG+GKS L AI
Sbjct: 25 TCIIGPNGSGKSNLMDAIS 43
>gnl|CDD|30909 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 28.7 bits (64), Expect = 1.9
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Query: 42 ALIGLNGAGKSTLFQAI---MGLIPLDKGSI 69
++G GAGKSTL + + +GL LD G I
Sbjct: 4 LILGPPGAGKSTLAKKLAKKLGLPHLDTGDI 34
>gnl|CDD|132765 cd07303, Porin3, Eukaryotic porin family that forms channels in the
mitochondrial outer membrane. The porin family 3
contains two sub-families that play vital roles in the
mitochondrial outer membrane, a translocase for unfolded
pre-proteins (Tom40) and the voltage-dependent anion
channel (VDAC) that regulates the flux of mostly anionic
metabolites through the outer mitochondrial membrane.
Length = 274
Score = 28.4 bits (63), Expect = 2.3
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 221 KKTVLASGLTSDIFNEDN-IQKTFGAQVSP----QSSILNESNIQTTFKAEVYPQINSTM 275
K + L + N + QV P +S+ N S + + + P I T+
Sbjct: 195 DKLEVGVNLAATAGNSNTRFGIAAKYQVDPDACFSASVNNSSLVGLGYTQTLKPGIKLTL 254
Query: 276 C 276
Sbjct: 255 S 255
>gnl|CDD|33731 COG3950, COG3950, Predicted ATP-binding protein involved in
virulence [General function prediction only].
Length = 440
Score = 28.1 bits (62), Expect = 2.5
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI-MGLIPLDKGSIS 70
+ L+ IS+ + L+ + E+ T ++G NG+GK+T+ AI L I
Sbjct: 1 MRLRKISLNNFRCFLNLD---ITFGESETTIIVGPNGSGKTTVLDAIRNALNKFIDFFIY 57
Query: 71 IFNQTV 76
+ +++
Sbjct: 58 LRFKSL 63
>gnl|CDD|37559 KOG2348, KOG2348, KOG2348, Urea transporter [Amino acid transport
and metabolism].
Length = 667
Score = 28.4 bits (63), Expect = 2.5
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 1 MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTL 54
M T + + LE + TYP+ + + + AL+G NGA L
Sbjct: 303 MATTMGLSCLALENNPVFPTYPDPVSSKQVSEGLVLPYAAIALMGKNGAAAGLL 356
>gnl|CDD|37404 KOG2193, KOG2193, KOG2193, IGF-II mRNA-binding protein IMP,
contains RRM and KH domains [RNA processing and
modification, General function prediction only].
Length = 584
Score = 28.2 bits (62), Expect = 2.6
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 25 YCALEDVNLFIPENTITALIGLNGA 49
E V +FIP + A+IG G
Sbjct: 407 NPEQEQVRMFIPAQAVGAIIGKKGQ 431
>gnl|CDD|31389 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 28.1 bits (62), Expect = 2.8
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 34 FIPENTITALIGLNGAGKSTLFQAIM 59
TA++G NG+GKS + AI
Sbjct: 20 INFSPGFTAIVGPNGSGKSNIVDAIR 45
>gnl|CDD|32910 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 28.1 bits (62), Expect = 3.0
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 23 NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQA-IMGLIP 63
NG+ A F + +T L G NGAGKST A + LIP
Sbjct: 16 NGFFA----RTFDLDELVTTLSGGNGAGKSTTMAAFVTALIP 53
>gnl|CDD|72998 cd03239, ABC_SMC_head, The structural maintenance of chromosomes
(SMC) proteins are essential for successful chromosome
transmission during replication and segregation of the
genome in all organisms. SMCs are generally present as
single proteins in bacteria, and as at least six
distinct proteins in eukaryotes. The proteins range in
size from approximately 110 to 170 kDa, and each has
five distinct domains: amino- and carboxy-terminal
globular domains, which contain sequences
characteristic of ATPases, two coiled-coil regions
separating the terminal domains , and a central
flexible hinge. SMC proteins function together with
other proteins in a range of chromosomal transactions,
including chromosome condensation, sister-chromatid
cohesion, recombination, DNA repair, and epigenetic
silencing of gene expression..
Length = 178
Score = 27.9 bits (62), Expect = 3.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 36 PENTITALIGLNGAGKSTLFQAI 58
N+ A++G NG+GKS + AI
Sbjct: 20 GSNSFNAIVGPNGSGKSNIVDAI 42
>gnl|CDD|73036 cd03277, ABC_SMC5_euk, Eukaryotic SMC5 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in
the single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B'
motif, and a motif with homology to the signature
sequence of the ATP-binding cassette (ABC) family of
ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18)..
Length = 213
Score = 27.8 bits (62), Expect = 3.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 34 FIPENTITALIGLNGAGKSTLFQAI 58
F P ++ +IG NG+GKS++ AI
Sbjct: 19 FRPGPSLNMIIGPNGSGKSSIVCAI 43
>gnl|CDD|73001 cd03242, ABC_RecF, RecF is a recombinational DNA repair ATPase
that maintains replication in the presence of DNA
damage. When replication is prematurely disrupted by
DNA damage, several recF pathway gene products play
critical roles processing the arrested replication
fork, allowing it to resume and complete its task.
This CD represents the nucleotide binding domain of
RecF. RecF belongs to a large superfamily of ABC
transporters involved in the transport of a wide
variety of different compounds including sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters
are a subset of nucleotide hydrolases with a signature
motif, Q-loop, and H-loop/switch region, in addition
to, the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins..
Length = 270
Score = 27.9 bits (62), Expect = 3.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 37 ENTITALIGLNGAGKSTLFQAIMGLIPL 64
E +T L+G N GK+ L +AI L
Sbjct: 20 EPGVTVLVGENAQGKTNLLEAISLLATG 47
>gnl|CDD|30362 COG0012, COG0012, Predicted GTPase, probable translation factor
[Translation, ribosomal structure and biogenesis].
Length = 372
Score = 27.8 bits (62), Expect = 3.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 42 ALIGLNGAGKSTLFQAI 58
++GL GKSTLF A+
Sbjct: 6 GIVGLPNVGKSTLFNAL 22
>gnl|CDD|133300 cd01900, YchF, YchF subfamily. YchF is a member of the Obg
family, which includes four other subfamilies of
GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an
essential gene that is involved in DNA replication in
C. crescentus and Streptomyces griseus and is
associated with the ribosome. Several members of the
family, including YchF, possess the TGS domain related
to the RNA-binding proteins. Experimental data and
genomic analysis suggest that YchF may be part of a
nucleoprotein complex and may function as a
GTP-dependent translational factor.
Length = 274
Score = 27.8 bits (63), Expect = 3.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 44 IGLNGAGKSTLFQAI 58
+GL GKSTLF A+
Sbjct: 4 VGLPNVGKSTLFNAL 18
>gnl|CDD|31388 COG1195, RecF, Recombinational DNA repair ATPase (RecF pathway)
[DNA replication, recombination, and repair].
Length = 363
Score = 27.5 bits (61), Expect = 3.9
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 36 PENTITALIGLNGAGKSTLFQAI 58
+ L+G NG GK+ L +AI
Sbjct: 21 LSPGVNVLVGENGQGKTNLLEAI 43
>gnl|CDD|144608 pfam01078, Mg_chelatase, Magnesium chelatase, subunit ChlI.
Magnesium-chelatase is a three-component enzyme that
catalyses the insertion of Mg2+ into protoporphyrin IX.
This is the first unique step in the synthesis of
(bacterio)chlorophyll. Due to this, it is thought that
Mg-chelatase has an important role in channelling
inter- mediates into the (bacterio)chlorophyll branch
in response to conditions suitable for photosynthetic
growth. ChlI and BchD have molecular weight between
38-42 kDa.
Length = 207
Score = 27.5 bits (62), Expect = 4.1
Identities = 8/21 (38%), Positives = 15/21 (71%)
Query: 43 LIGLNGAGKSTLFQAIMGLIP 63
+IG G+GK+ L + + G++P
Sbjct: 27 MIGPPGSGKTMLAKRLPGILP 47
>gnl|CDD|133370 cd04170, EF-G_bact, Elongation factor G (EF-G) subfamily.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G
in the GTP form binds to the ribosome, primarily
through the interaction of its EF-Tu-like domain with
the 50S subunit. The binding of EF-G to the ribosome
in this manner stimulates the GTPase activity of EF-G.
On GTP hydrolysis, EF-G undergoes a conformational
change that forces its arm deeper into the A site on
the 30S subunit. To accommodate this domain, the
peptidyl-tRNA in the A site moves to the P site,
carrying the mRNA and the deacylated tRNA with it. The
ribosome may be prepared for these rearrangements by
the initial binding of EF-G as well. The dissociation
of EF-G leaves the ribosome ready to accept the next
aminoacyl-tRNA into the A site. This group contains
only bacterial members.
Length = 268
Score = 27.5 bits (62), Expect = 4.1
Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)
Query: 42 ALIGLNGAGKSTLFQAI---MGLIP 63
AL+G +G+GK+TL +A+ G I
Sbjct: 3 ALVGHSGSGKTTLAEALLYATGAID 27
>gnl|CDD|133279 cd01878, HflX, HflX subfamily. A distinct conserved domain with
a glycine-rich segment N-terminal of the GTPase domain
characterizes the HflX subfamily. The E. coli HflX has
been implicated in the control of the lambda cII
repressor proteolysis, but the actual biological
functions of these GTPases remain unclear. HflX is
widespread, but not universally represented in all
three superkingdoms.
Length = 204
Score = 27.4 bits (62), Expect = 4.3
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 42 ALIGLNGAGKSTLFQAIMG 60
AL+G AGKSTLF A+ G
Sbjct: 45 ALVGYTNAGKSTLFNALTG 63
>gnl|CDD|133281 cd01881, Obg_like, The Obg-like subfamily consists of five
well-delimited, ancient subfamilies, namely Obg, DRG,
YyaF/YchF, Ygr210, and NOG1. Four of these groups
(Obg, DRG, YyaF/YchF, and Ygr210) are characterized by
a distinct glycine-rich motif immediately following the
Walker B motif (G3 box). Obg/CgtA is an essential gene
that is involved in the initiation of sporulation and
DNA replication in the bacteria Caulobacter and
Bacillus, but its exact molecular role is unknown.
Furthermore, several OBG family members possess a
C-terminal RNA-binding domain, the TGS domain, which is
also present in threonyl-tRNA synthetase and in
bacterial guanosine polyphosphatase SpoT. Nog1 is a
nucleolar protein that might function in ribosome
assembly. The DRG and Nog1 subfamilies are ubiquitous
in archaea and eukaryotes, the Ygr210 subfamily is
present in archaea and fungi, and the Obg and YyaF/YchF
subfamilies are ubiquitous in bacteria and eukaryotes.
The Obg/Nog1 and DRG subfamilies appear to form one
major branch of the Obg family and the Ygr210 and YchF
subfamilies form another branch. No GEFs, GAPs, or GDIs
for Obg have been identified.
Length = 176
Score = 27.5 bits (62), Expect = 4.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 43 LIGLNGAGKSTLFQAI 58
L+GL GKSTL A+
Sbjct: 1 LVGLPNVGKSTLLNAL 16
>gnl|CDD|34546 COG4938, COG4938, Uncharacterized conserved protein [Function
unknown].
Length = 374
Score = 27.3 bits (60), Expect = 4.8
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 134 NVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSL 193
M R +G + + L + +K +II++ P A + + + ++ LL L
Sbjct: 230 RFDGLEMDIRNVG-FGLSYVLPIGLMLLIVKKKYLIIIENPEAHLHPEGQSKLGDLLAEL 288
Query: 194 LNEDIMILVSTHN---INSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQK 241
+ ++V TH+ IN + L + LA L N ++K
Sbjct: 289 AARGVQVVVETHSDHIINGLRLIVLEGKILTRNKLAVYLFKREGNGTIVKK 339
>gnl|CDD|144508 pfam00931, NB-ARC, NB-ARC domain.
Length = 285
Score = 27.3 bits (61), Expect = 5.0
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 36 PENTITALIGLNGAGKSTLFQAI 58
+ ++G+ G GK+TL + I
Sbjct: 17 ENLGVVGIVGMGGVGKTTLAKQI 39
>gnl|CDD|31297 COG1100, COG1100, GTPase SAR1 and related small G proteins
[General function prediction only].
Length = 219
Score = 27.3 bits (59), Expect = 5.2
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 42 ALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVEN 78
++G G GK+TL ++G + +I N
Sbjct: 9 VVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAK 45
>gnl|CDD|73032 cd03273, ABC_SMC2_euk, Eukaryotic SMC2 proteins; SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18)..
Length = 251
Score = 27.1 bits (60), Expect = 5.2
Identities = 43/202 (21%), Positives = 77/202 (38%), Gaps = 42/202 (20%)
Query: 41 TALIGLNGAGKSTLFQAI---MGLIPLD-------------KGSISIFNQTVENALKADL 84
A+ GLNG+GKS + AI +G+ L +G I +V
Sbjct: 28 NAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSD 87
Query: 85 IAYIPQTESIDWTFPILV--EDVVMMGRYKHMNWRRVASNND----YRIVTEALEN---- 134
+ P +P + +V+ G K++ A ++ V + N
Sbjct: 88 KSQSPIGFE---NYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFL 144
Query: 135 ---------VGMSSMRQRQIGELSIGQQKRVFLARALA----QKSQVIIMDEPFAAIDFK 181
+ M + + + ELS GQ+ V L+ LA + + + I+DE AA+D
Sbjct: 145 IMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLS 204
Query: 182 TEREMIFLLKSLLNEDIMILVS 203
+ + ++K+ I+VS
Sbjct: 205 HTQNIGRMIKTHFKGSQFIVVS 226
>gnl|CDD|30188 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is
a important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP..
Length = 154
Score = 27.1 bits (60), Expect = 5.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 42 ALIGLNGAGKSTL 54
LIG+ GAGK+T+
Sbjct: 3 VLIGMMGAGKTTV 15
>gnl|CDD|145705 pfam02689, Herpes_Helicase, Helicase. This family consists of
Helicases from the Herpes viruses. Helicases are
responsible for the unwinding of DNA and are essential
for replication and completion of the viral life cycle.
Length = 801
Score = 26.9 bits (60), Expect = 5.6
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Query: 45 GLNGAGKSTLFQAI-MGLIPLDKGSISIFNQTVENALKADLIAYIP 89
G GAGKST Q + L L G+ + Q + L AY P
Sbjct: 67 GTAGAGKSTSIQTLNENLDCLITGATRVAAQNLSAKLSRAYSAYCP 112
>gnl|CDD|34333 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 26.9 bits (59), Expect = 5.6
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 37 ENTITALIGLNGAGKSTLFQAIMGLI 62
E+ + G N AGKSTLF I ++
Sbjct: 23 ESKFQVIYGENEAGKSTLFSFIHSML 48
>gnl|CDD|34310 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 27.0 bits (59), Expect = 5.7
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 141 RQRQIGE-----LSIGQQKRVFLARALAQ--------KSQVIIMDEPFAAIDFKTEREMI 187
QR+ G+ LS G++ + LA+ K++V+++D+P ++ D +
Sbjct: 518 IQREDGQLVGNTLSEGEKTFIAFLYFLAKLKENPDISKNKVVVIDDPISSFDSNILFRVS 577
Query: 188 FLLKSLLNEDIMILVSTHN 206
L+K ++V THN
Sbjct: 578 VLVKEEKTNIKQVIVLTHN 596
>gnl|CDD|133256 cd00880, Era_like, Era (E. coli Ras-like protein)-like. This
family includes several distinct subfamilies
(TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that
generally show sequence conservation in the region
between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. TrmE is
ubiquitous in bacteria and is a widespread
mitochondrial protein in eukaryotes, but is absent from
archaea. The yeast member of TrmE family, MSS1, is
involved in mitochondrial translation; bacterial
members are often present in translation-related
operons. FeoB represents an unusual adaptation of
GTPases for high-affinity iron (II) transport. YihA
(EngB) family of GTPases is typified by the E. coli
YihA, which is an essential protein involved in cell
division control. Era is characterized by a distinct
derivative of the KH domain (the pseudo-KH domain)
which is located C-terminal to the GTPase domain. EngA
and its orthologs are composed of two GTPase domains
and, since the sequences of the two domains are more
similar to each other than to other GTPases, it is
likely that an ancient gene duplication, rather than a
fusion of evolutionarily distinct GTPases, gave rise to
this family.
Length = 163
Score = 26.9 bits (60), Expect = 5.7
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 43 LIGLNGAGKSTLFQAIMG 60
L G AGKS+L A++G
Sbjct: 1 LFGRTNAGKSSLLNALLG 18
>gnl|CDD|31353 COG1159, Era, GTPase [General function prediction only].
Length = 298
Score = 27.1 bits (60), Expect = 5.7
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 5/41 (12%)
Query: 42 ALIGLNGAGKSTLFQAIMGLIPLDKGSI-SIFNQTVENALK 81
A+IG GKSTL A++G K SI S QT N ++
Sbjct: 10 AIIGRPNVGKSTLLNALVG----QKISIVSPKPQTTRNRIR 46
>gnl|CDD|39282 KOG4079, KOG4079, KOG4079, Putative mitochondrial ribosomal protein
mRpS25 [Translation, ribosomal structure and
biogenesis].
Length = 169
Score = 26.9 bits (59), Expect = 6.1
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 133 ENVGMSSMRQRQIGELSIGQQKRVFLARALAQ----KSQVIIMDE----PFAAIDFKTER 184
+NV + S+ G G + VF Q K Q++ PFA R
Sbjct: 26 DNVNVFSVNYNTNGPEQSGARDFVFWNIPQIQYKNPKVQLVKHKNMTPSPFARAYLDDGR 85
Query: 185 EMIFLLKSLLNEDIM 199
E++F L + E+I
Sbjct: 86 EVLFDLDGMKREEIE 100
>gnl|CDD|34526 COG4917, EutP, Ethanolamine utilization protein [Amino acid
transport and metabolism].
Length = 148
Score = 26.5 bits (58), Expect = 8.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 42 ALIGLNGAGKSTLFQAIMG 60
A +G G GK+TLFQ++ G
Sbjct: 5 AFVGQVGCGKTTLFQSLYG 23
>gnl|CDD|73037 cd03278, ABC_SMC_barmotin, Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in
the single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B'
motif, and a motif with homology to the signature
sequence of the ATP-binding cassette (ABC) family of
ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18)..
Length = 197
Score = 26.2 bits (58), Expect = 9.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 40 ITALIGLNGAGKSTLFQAI 58
+TA++G NG+GKS + AI
Sbjct: 24 LTAIVGPNGSGKSNIIDAI 42
>gnl|CDD|109493 pfam00437, GSPII_E, Type II/IV secretion system protein. This
family contains both type II and type IV pathway
secretion proteins from bacteria. VirB11 ATPase is a
subunit of the Agrobacterium tumefaciens transfer DNA
(T-DNA) transfer system, a type IV secretion pathway
required for delivery of T-DNA and effector proteins to
plant cells during infection.
Length = 283
Score = 26.5 bits (59), Expect = 9.6
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 43 LIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKA-DLIAYIPQTESIDWTFPIL 101
+ G G+GK+TL A++ I D I VE L+ + + + TF L
Sbjct: 144 VSGGTGSGKTTLLYALLNEINTDDERIVTIEDPVEIQLEGPNQVQLNTR--LAGVTFADL 201
Query: 102 VE-------DVVMMG 109
+ D +M+G
Sbjct: 202 LRAALRQRPDRIMVG 216
>gnl|CDD|31145 COG0802, COG0802, Predicted ATPase or kinase [General function
prediction only].
Length = 149
Score = 26.4 bits (58), Expect = 9.8
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 29 EDVNLFIPENTITALIGLNGAGKSTLFQAI 58
E + + + L G GAGK+TL + I
Sbjct: 16 ERLAEALKAGDVVLLSGDLGAGKTTLVRGI 45
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.133 0.372
Gapped
Lambda K H
0.267 0.0590 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,111,932
Number of extensions: 159762
Number of successful extensions: 960
Number of sequences better than 10.0: 1
Number of HSP's gapped: 806
Number of HSP's successfully gapped: 284
Length of query: 280
Length of database: 6,263,737
Length adjustment: 93
Effective length of query: 187
Effective length of database: 4,254,100
Effective search space: 795516700
Effective search space used: 795516700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)