RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780538|ref|YP_003064951.1| ABC transporter, nucleotide
binding/ATPase protein (iron) [Candidatus Liberibacter asiaticus str.
psy62]
(280 letters)
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 295 bits (757), Expect = 8e-81
Identities = 125/233 (53%), Positives = 166/233 (71%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
G+ + D++VT+ NG+ AL D + +P +I AL+G+NG+GKSTLF+A+MG + L G IS
Sbjct: 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKIS 65
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTE 130
I Q AL+ +L+AY+PQ+E +DW+FP+LVEDVVMMGRY HM W R A D +IVT
Sbjct: 66 ILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTA 125
Query: 131 ALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLL 190
AL V M R RQIGELS GQ+KRVFLARA+AQ+ QVI++DEPF +D KTE +I LL
Sbjct: 126 ALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLL 185
Query: 191 KSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQKTF 243
+ L +E +LVSTHN+ S+ FCD T+ +K TVLASG T F +N++ F
Sbjct: 186 RELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTFTAENLELAF 238
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown.
Length = 223
Score = 177 bits (450), Expect = 3e-45
Identities = 80/213 (37%), Positives = 117/213 (54%), Gaps = 4/213 (1%)
Query: 42 ALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPIL 101
L+G NGAGK+TL +AI+GLIP KG++ + + + I Y+PQ W FPI
Sbjct: 10 GLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRH--IGYVPQRHEFAWDFPIS 67
Query: 102 VEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARA 161
V VM GR H+ W R D+ V +AL VG++ + R +GELS GQ++RV +ARA
Sbjct: 68 VAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARA 127
Query: 162 LAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLK 221
LA + V+++DEPF +D T+ + L L IL++TH++ + CDR + L
Sbjct: 128 LATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLLN 187
Query: 222 KTVLASGLTSDIFNEDNIQKTFGAQVSPQSSIL 254
V+A G + + TFG VS S +L
Sbjct: 188 GRVIADGTPQQLQDPAPWMTTFG--VSDSSPLL 218
>gnl|CDD|169949 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 139 bits (353), Expect = 6e-34
Identities = 71/240 (29%), Positives = 127/240 (52%), Gaps = 7/240 (2%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+++ D+SV + L+ V+L + E ++ L+G NGAGK+TL +AI G + G++ +
Sbjct: 4 IDVSDLSVEF-GDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLV 62
Query: 72 FNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
VE +A +PQ S+ + F V VV MGR H + + D V
Sbjct: 63 AGDDVEALSARAASRRVASVPQDTSLSFEFD--VRQVVEMGRTPHRSRFDTWTETDRAAV 120
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
A+E G++ R + LS G+++RV LARALAQ + V+++DEP A++D + +
Sbjct: 121 ERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLE 180
Query: 189 LLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTFGAQV 247
L++ L+++ + + H+++ +CD + L V A+G +D+ D ++ F A+
Sbjct: 181 LVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAAFDART 240
>gnl|CDD|184133 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 133 bits (337), Expect = 6e-32
Identities = 78/250 (31%), Positives = 134/250 (53%), Gaps = 24/250 (9%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE +++SV G L+DV+L + + A++G NGAGKSTL +A+ G + D G + +
Sbjct: 3 LEARNLSVRL-GGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61
Query: 72 FNQTVEN---ALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
+ + + A A A +PQ S+ +FP VE+VV MGR H R D +V
Sbjct: 62 NGRPLADWSPAELARRRAVLPQHSSL--SFPFTVEEVVAMGRAPHGLSRA----EDDALV 115
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQ------KSQVIIMDEPFAAIDFKT 182
AL V ++ + R +LS G+Q+RV LAR LAQ + +++DEP +A+D
Sbjct: 116 AAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAH 175
Query: 183 EREMIFLLKSLLNED----IMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNED 237
+ ++ L + L +E I++L H++N + DR + L + ++A G +++ +
Sbjct: 176 QHHVLRLARQLAHERGLAVIVVL---HDLNLAARYADRIVLLHQGRLVADGTPAEVLTPE 232
Query: 238 NIQKTFGAQV 247
+++ +GA V
Sbjct: 233 TLRRVYGADV 242
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates.
Length = 243
Score = 132 bits (335), Expect = 8e-32
Identities = 76/244 (31%), Positives = 127/244 (52%), Gaps = 13/244 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE++++S YPNG AL+++NL I A+IG +GAGKSTL + I L+ GSI +
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 72 FNQTVENALKADL------IAYIPQTESIDWTFPILVEDVVMMGRYKHMN-WR---RVAS 121
+ L I I Q ++ + V + V+ GR + WR S
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNL--IERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 122 NNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
D ALE VG++ ++ +LS GQQ+RV +ARALAQ+ +I+ DEP A++D K
Sbjct: 120 EEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPK 179
Query: 182 TEREMIFLLKSLLNED-IMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQ 240
T ++++ LK + ED I ++++ H ++ + DR + LK + +++ ++
Sbjct: 180 TSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELDDEVLR 239
Query: 241 KTFG 244
+G
Sbjct: 240 HIYG 243
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 126 bits (317), Expect = 9e-30
Identities = 68/238 (28%), Positives = 126/238 (52%), Gaps = 7/238 (2%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
GL L +S + G ++ V++ P ++T L+G NG+GKSTL + + G + D G++
Sbjct: 1 GLRLSRVSWSA-GGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVD 59
Query: 71 IFN---QTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI 127
+ + +A +A + Q D P+ V DVV +GR H + S +D +
Sbjct: 60 LAGVDLHGLSRRARARRVALVEQ--DSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV 117
Query: 128 VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
V AL +S + R + LS G+++RV +ARALAQ+ +++++DEP +D + + E +
Sbjct: 118 VDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETL 177
Query: 188 FLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTFG 244
L++ L + ++ + H++N S+CD + L V+A+G ++ I+ +G
Sbjct: 178 ALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLTPALIRAVYG 235
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 122 bits (308), Expect = 9e-29
Identities = 63/232 (27%), Positives = 124/232 (53%), Gaps = 12/232 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L++++++ Y +G AL+ +N+ I + +TA++G NGAGKSTLFQ + G++ G I
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 72 FNQTVENALKADL-----IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYR 126
+ ++ + K + + + Q + +DV + +N + + + +
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDV----SFGAVNLK-LPEDEVRK 120
Query: 127 IVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
V AL+ G+ ++ + LS GQ+KRV +A L + +V+++DEP A +D E+
Sbjct: 121 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEI 180
Query: 187 IFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNE 236
+ LL + E + I+++TH+I+ +P +CD +K+ V+ G ++F E
Sbjct: 181 MKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 118 bits (298), Expect = 2e-27
Identities = 74/274 (27%), Positives = 131/274 (47%), Gaps = 31/274 (11%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L ++++V Y L D++L +P ITALIG NG GKSTL + L+ G++ +
Sbjct: 3 LRTENLTVGYGTKR-ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL 61
Query: 72 FNQTV----ENALKADLIAYIPQTESIDWTFP--ILVEDVVMMGRYKHMN-WRRVASNND 124
++ + L A +A +PQ P I V ++V GR ++ W R+ S D
Sbjct: 62 GDKPISMLSSRQL-ARRLALLPQHHLT----PEGITVRELVAYGRSPWLSLWGRL-SAED 115
Query: 125 YRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
V +A+E ++ + R++ +LS GQ++R FLA LAQ + V+++DEP +D +
Sbjct: 116 NARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQV 175
Query: 185 EMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTF 243
E++ L++ L + ++ H++N +CD + L V+A G ++ ++ F
Sbjct: 176 ELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTPGLLRTVF 235
Query: 244 GAQVSPQSSILNESNIQTTFKAEVYPQINSTMCI 277
+ I E P + MC+
Sbjct: 236 DVEA----EIHPE------------PVSGTPMCV 253
>gnl|CDD|184206 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 118 bits (297), Expect = 2e-27
Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 15/233 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E++D+ Y +G AL+ ++L IPE + TAL+G NGAGKSTL + G+ +G + +
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV 64
Query: 72 FNQTVENAL------KADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY 125
+ V K L+ P D F V D V G +N +
Sbjct: 65 MGREVNAENEKWVRSKVGLVFQDPD----DQVFSSTVWDDVAFGP---VNMGLDKDEVER 117
Query: 126 RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTERE 185
R V EAL+ V M R + LS GQ+KRV +A LA VI++DEP A +D + +
Sbjct: 118 R-VEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176
Query: 186 MIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNED 237
++ +L L N+ ++V+TH+++ + D+ I LK+ VLA G S + +ED
Sbjct: 177 LMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTDED 229
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 115 bits (289), Expect = 2e-26
Identities = 74/238 (31%), Positives = 124/238 (52%), Gaps = 14/238 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE +D+ +YP+G AL+ +N + + AL+G NGAGKSTLF G++ G + I
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61
Query: 72 FNQTVENALKADLIAYIPQTESI------DWTFPILVEDVVMMGRYKHMNWRRVASNNDY 125
+ ++ K L+ + +T I D F VE+ V G +N +
Sbjct: 62 KGEPIKYD-KKSLLE-VRKTVGIVFQNPDDQLFAPTVEEDVAFGP---LNLGLSKEEVEK 116
Query: 126 RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTERE 185
R V EAL+ VGM + LS GQ+KRV +A LA K ++I++DEP + +D +
Sbjct: 117 R-VKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175
Query: 186 MIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKT-VLASGLTSDIF-NEDNIQK 241
++ LL L E I I++STH+++ +P + D+ + ++ G ++F + + I+K
Sbjct: 176 IMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSDIETIRK 233
>gnl|CDD|163042 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit.
Unfortunately, the gene symbol nomenclature adopted
based on this operon in B. subtilis assigns cydC to the
third gene in the operon where this gene is actually
homologous to the E. coli cydD gene. We have chosen to
name all homologs in this family in accordance with the
precedence of publication of the E. coli name, CydD.
Length = 529
Score = 111 bits (280), Expect = 2e-25
Identities = 65/224 (29%), Positives = 106/224 (47%), Gaps = 30/224 (13%)
Query: 12 LELKDISVTYPN-GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
LE +SV YP AL V+ +P AL+G +GAGKSTL ++G + +GSI+
Sbjct: 321 LEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380
Query: 71 IFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI 127
+ + +A IA++PQ + F + + + + R AS+ +
Sbjct: 381 VNGVPLADADADSWRDQIAWVPQHP---FLFAGTIAENIRLA-------RPDASDAE--- 427
Query: 128 VTEALENVGMSSMRQ-------RQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFA 176
+ ALE G+ IGE LS GQ +R+ LARA + + ++++DEP A
Sbjct: 428 IRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTA 487
Query: 177 AIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
+D +TE + L++L ++LV TH + DR + L
Sbjct: 488 HLDAETEALVTEALRALAQGRTVLLV-THRLALAER-ADRIVVL 529
>gnl|CDD|163051 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 529
Score = 107 bits (268), Expect = 5e-24
Identities = 60/217 (27%), Positives = 112/217 (51%), Gaps = 29/217 (13%)
Query: 4 AVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP 63
A+ K LEL+D+S YP L+ V+L +P A++G +G+GKSTL + GL+
Sbjct: 327 ALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD 386
Query: 64 LDKGSISI---FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVA 120
+G +++ ++++ L+ I+ Q + F V D + +GR A
Sbjct: 387 PLQGEVTLDGVSVSSLQDELRR-RISVFAQDAHL---FDTTVRDNLRLGRPD-------A 435
Query: 121 SNNDYRIVTEALENVGMSSMRQR-------QIGE----LSIGQQKRVFLARALAQKSQVI 169
++ + + ALE VG++ + +GE LS G+++R+ LARAL + ++
Sbjct: 436 TDEE---LWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL 492
Query: 170 IMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHN 206
++DEP +D TE E++ L + L+ ++++ TH+
Sbjct: 493 LLDEPTEHLDAGTESELLEDLLAALSGKTVVVI-THH 528
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 104 bits (260), Expect = 3e-23
Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E +D+ +Y AL ++N P N+ A+IG NGAGKSTLF+ G++ GS+ I
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63
Query: 72 FNQ--TVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVT 129
+ T EN + + D F VE + G +N +R V+
Sbjct: 64 RGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGP---INLGLDEETVAHR-VS 119
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
AL +G+ +R R LS G++KRV +A +A + QV+++DEP A +D + +E+I
Sbjct: 120 SALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179
Query: 190 LKSLLNEDIMILV-STHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNI 239
L L M ++ STH ++ +P D + K ++A G +IF + ++
Sbjct: 180 LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDL 231
>gnl|CDD|163239 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export.
Length = 694
Score = 103 bits (260), Expect = 4e-23
Identities = 71/237 (29%), Positives = 116/237 (48%), Gaps = 33/237 (13%)
Query: 9 KGGLELKDISVTYPN-GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
+G +E +++S YP AL++V+L I A+IG G+GKSTL + ++GL +G
Sbjct: 461 QGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG 520
Query: 68 SISIFNQTVENALKADL---IAYIPQTESID-WTFPILVEDVVMMGRYKHMNWRRVASNN 123
S+ + + ADL I Y+PQ D F + D + +G +
Sbjct: 521 SVLLDGVDIRQIDPADLRRNIGYVPQ----DPRLFYGTLRDNIALGA---------PYAD 567
Query: 124 DYRIVTEALENVGMSS-MRQ------RQIGE----LSIGQQKRVFLARALAQKSQVIIMD 172
D I+ A E G++ +R+ QIGE LS GQ++ V LARAL + ++++D
Sbjct: 568 DEEIL-RAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLD 626
Query: 173 EPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASG 228
EP +A+D ++E LK L +++ TH S+ DR I + ++A G
Sbjct: 627 EPTSAMDNRSEERFKDRLKRWL-AGKTLVLVTHR-TSLLDLVDRIIVMDNGRIVADG 681
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux.
Length = 190
Score = 101 bits (254), Expect = 2e-22
Identities = 58/192 (30%), Positives = 97/192 (50%), Gaps = 10/192 (5%)
Query: 21 YPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENAL 80
YP G L+ +N + AL+G NGAGKSTL + GL+ G++ I + ++ +
Sbjct: 1 YPGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR 60
Query: 81 KADL-----IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENV 135
K L + + Q + +DV ++ V R V EAL V
Sbjct: 61 KGLLERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEV-----ERRVREALTAV 115
Query: 136 GMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLN 195
G S +R+R LS G++KRV +A A+A + V+++DEP A +D +M+ +L+ L
Sbjct: 116 GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA 175
Query: 196 EDIMILVSTHNI 207
E + +++STH++
Sbjct: 176 EGMTVVISTHDV 187
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 100 bits (250), Expect = 4e-22
Identities = 66/242 (27%), Positives = 115/242 (47%), Gaps = 24/242 (9%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD--------KGSISIFNQTVE-- 77
L D++L I +TAL+G NGAGKSTL +A+ G + G +++ + +
Sbjct: 17 LRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAI 76
Query: 78 NALK-ADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVG 136
+A + A L A +PQ F ++V++GRY H ++ D I +AL G
Sbjct: 77 DAPRLARLRAVLPQAAQP--AFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAG 134
Query: 137 MSSMRQRQIGELSIGQQKRVFLARALAQ---------KSQVIIMDEPFAAIDFKTEREMI 187
+++ R + LS G+ RV AR LAQ + +++DEP AA+D + ++
Sbjct: 135 ATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLL 194
Query: 188 FLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTFGA 245
++ L + ++ +L H+ N DR L ++A G +D+ +I + +G
Sbjct: 195 DTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVLTPAHIARCYGF 254
Query: 246 QV 247
V
Sbjct: 255 AV 256
>gnl|CDD|163352 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins.
Length = 206
Score = 100 bits (251), Expect = 5e-22
Identities = 61/220 (27%), Positives = 106/220 (48%), Gaps = 27/220 (12%)
Query: 14 LKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFN 73
LK+IS + L+D+NL I + + A+IG +G+GKSTL I L D G + +
Sbjct: 1 LKNISKKF-GDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNG 59
Query: 74 QTVE-------NALKADLIAYIPQ------TESIDWTFPILVEDVVMMGRYKHMNWRRVA 120
+ + + + + Y+ Q E+++ + ++ +
Sbjct: 60 KETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYK-----------KLSK 108
Query: 121 SNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDF 180
+ EALE VG++ +++I ELS G+Q+RV LARA+ + +I+ DEP ++D
Sbjct: 109 KEKREKKK-EALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDP 167
Query: 181 KTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
K E++ LL L +E I++ TH+ + DR I L
Sbjct: 168 KNRDEVLDLLLELNDEGKTIIIVTHD-PEVAKQADRVIEL 206
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 99.8 bits (249), Expect = 7e-22
Identities = 73/235 (31%), Positives = 125/235 (53%), Gaps = 10/235 (4%)
Query: 11 GLELKDISVTYPNGYC----ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
G+ L+++S TY G AL DVNL I + + TA IG G+GKST+ Q + GL +
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 67 GSISIFNQTVENALKADLIAYIPQTESIDWTFP---ILVEDVVMMGRYKHMNWRRVASNN 123
GS+ + + + + K I I + + + FP + E V+ + N+ V+
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFG-VSQEE 120
Query: 124 DYRIVTEALENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
+ E L VG+S S+ ++ ELS GQ +RV +A LA + +++++DEP A +D K
Sbjct: 121 AEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180
Query: 183 EREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNE 236
+E++ L K L + I++ TH ++ + ++ D L+K ++ SG DIF +
Sbjct: 181 RKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235
>gnl|CDD|163250 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 230
Score = 99 bits (250), Expect = 7e-22
Identities = 69/240 (28%), Positives = 126/240 (52%), Gaps = 24/240 (10%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE+ +++V Y L V+L +P+ +T ++G NG GK+TL + +MGL+P+ GSI +
Sbjct: 1 LEVSNLNVYY-GQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59
Query: 72 FNQTVENALKADL-----IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDY 125
+ + L IAY+PQ I FP L VE+ ++ G + S
Sbjct: 60 DGEDIT-KLPPHERARAGIAYVPQGREI---FPRLTVEENLLTG----LAALPRRSR--- 108
Query: 126 RIVTEALE--NVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
+I E E V + M R+ G+LS GQQ+++ +ARAL + +++++DEP I
Sbjct: 109 KIPDEIYELFPV-LKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSII 167
Query: 184 REMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQK 241
+++ +++ L E + IL+ ++ DR +++ V+ASG ++ +ED +++
Sbjct: 168 KDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL-DEDKVRR 226
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 99.5 bits (248), Expect = 9e-22
Identities = 69/254 (27%), Positives = 129/254 (50%), Gaps = 18/254 (7%)
Query: 1 MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG 60
M+ + L+++S P G L ++L P +T LIG NG+GKSTL + +
Sbjct: 1 MQEYTNHSDTTFALRNVSFRVP-GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGR 59
Query: 61 LIPLDKGSISIFNQTVE---NALKADLIAYIPQTESIDWTFP----ILVEDVVMMGRYK- 112
P +G I + Q +E + A +AY+PQ P + V ++V +GRY
Sbjct: 60 HQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQ------LPAAEGMTVRELVAIGRYPW 113
Query: 113 HMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMD 172
H R + D V EA+ VG+ + R + LS G+++R ++A +AQ S+ +++D
Sbjct: 114 HGALGRFGAA-DREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLD 172
Query: 173 EPFAAIDFKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLT 230
EP +A+D + +++ L+ L E + ++ H+IN +CD + L+ ++A G
Sbjct: 173 EPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTP 232
Query: 231 SDIFNEDNIQKTFG 244
+++ + +++ +G
Sbjct: 233 AELMRGETLEQIYG 246
>gnl|CDD|163576 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification.
Length = 236
Score = 98.9 bits (247), Expect = 1e-21
Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 22/232 (9%)
Query: 11 GLELKDISVTYPNGYC-ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSI 69
LE+ +S Y G AL+DV+ + AL+G NGAGKSTLF + L +G I
Sbjct: 1 ALEVAGLSFAY--GARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 70 SIFNQTVENALKADL--IAYIPQTESIDWTFPILVEDVVMMG-RYK---HMNWRRVASNN 123
S+ + A +A L + + Q ++D V RY H R A
Sbjct: 59 SVAGHDLRRAPRAALARLGVVFQQPTLDLDLS------VRQNLRYHAALHGLSRAEARER 112
Query: 124 DYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
+ L +G++ ++ EL+ G ++RV +ARAL + ++++DEP +D +
Sbjct: 113 ----IAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASR 168
Query: 184 REMIFLLKSLLNED-IMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDI 233
++ +++L + + +L +TH ++ I DR + L + VLA G +++
Sbjct: 169 AAIVAHVRALCRDQGLSVLWATHLVDEI-EADDRLVVLHRGRVLADGAAAEL 219
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 98.1 bits (244), Expect = 2e-21
Identities = 67/234 (28%), Positives = 118/234 (50%), Gaps = 17/234 (7%)
Query: 10 GGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD--KG 67
GG+ + + V Y L+D++L I + ALIG +G GK+TL +AI G + G
Sbjct: 4 GGIRIDHLRVAY-GANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG 62
Query: 68 SISIFNQTVENA--LKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNND 124
I+I ++ + +A K L A + Q ++ FP L VED V G + +++ +
Sbjct: 63 RIAIADRDLTHAPPHKRGL-ALLFQNYAL---FPHLKVEDNVAFG----LRAQKMPKADI 114
Query: 125 YRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
V +AL+ VG+ +LS G Q+R+ +ARA+A + V+++DEP +A+D
Sbjct: 115 AERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRA 174
Query: 185 EMIFLLKSLLNE--DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFN 235
M + +L E ++ IL TH+ + + D+ +K + A G +++
Sbjct: 175 NMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228
>gnl|CDD|184123 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 97.6 bits (243), Expect = 3e-21
Identities = 64/229 (27%), Positives = 115/229 (50%), Gaps = 12/229 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
++L +S +Y + ++ + L+G NGAGKST+ + I+G+ D G I++
Sbjct: 42 IDLAGVSKSY-GDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100
Query: 72 FNQTVENALKADL--IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVT 129
V + I +PQ +++D F + E++++ GRY M+ R + + ++
Sbjct: 101 LGVPVPARARLARARIGVVPQFDNLDLEFTVR-ENLLVFGRYFGMSTREIEA-----VIP 154
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF- 188
LE + S ++ +LS G ++R+ LARAL Q++I+DEP +D R +I+
Sbjct: 155 SLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLD-PHARHLIWE 213
Query: 189 LLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTV-LASGLTSDIFNE 236
L+SLL IL++TH + CDR L+ +A G + +E
Sbjct: 214 RLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc.
Length = 302
Score = 96.7 bits (241), Expect = 6e-21
Identities = 52/206 (25%), Positives = 91/206 (44%), Gaps = 8/206 (3%)
Query: 23 NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTV--ENAL 80
+ A++ VN + E + +G NGAGK+T + + L+ G+ + V E
Sbjct: 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRK 63
Query: 81 KADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSM 140
I +PQ S+D E++ MMGR + R E LE +
Sbjct: 64 VRRSIGIVPQYASVDEDLTGR-ENLEMMGRLYGLPKDEAEE----RAE-ELLELFELGEA 117
Query: 141 RQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMI 200
R +G S G ++R+ +A +L + V+ +DEP +D +T R + +++L E + I
Sbjct: 118 ADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTI 177
Query: 201 LVSTHNINSIPSFCDRTIFLKKTVLA 226
L++TH + CDR + +
Sbjct: 178 LLTTHYMEEADKLCDRIAIIDHGRII 203
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
Length = 237
Score = 95.3 bits (237), Expect = 1e-20
Identities = 65/187 (34%), Positives = 102/187 (54%), Gaps = 10/187 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E+ +IS + + + AL+DVNL +P ++ AL+G +G+GKSTL + I GL D G I +
Sbjct: 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRL 59
Query: 72 FNQTVEN-ALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVT 129
Q + I ++ Q ++ F L V D + G + R+ V
Sbjct: 60 NGQDATRVHARDRKIGFVFQHYAL---FKHLTVRDNIAFG----LEIRKHPKAKIKARVE 112
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
E LE V + + R +LS GQ++RV LARALA + QV+++DEPF A+D K +E+
Sbjct: 113 ELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSW 172
Query: 190 LKSLLNE 196
L+ L +E
Sbjct: 173 LRKLHDE 179
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This model does not recognize the highly
divergent NodI from Azorhizobium caulinodans.
Length = 303
Score = 95.0 bits (236), Expect = 2e-20
Identities = 63/213 (29%), Positives = 113/213 (53%), Gaps = 11/213 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
++L +S +Y + D++ I L+G NGAGKST+ + ++G+I D+G I++
Sbjct: 5 IDLVGVSKSY-GDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITV 63
Query: 72 FNQTVENALKA--DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVT 129
+ V + + I +PQ +++D F + E++++ GRY M+ R + + ++
Sbjct: 64 LGEPVPSRARLARVAIGVVPQFDNLDPEFTVR-ENLLVFGRYFGMSTREIEA-----VIP 117
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF- 188
LE + S ++ LS G ++R+ LARAL Q++I+DEP +D R +I+
Sbjct: 118 SLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD-PHARHLIWE 176
Query: 189 LLKSLLNEDIMILVSTHNINSIPSFCDRTIFLK 221
L+SLL IL++TH + CDR L+
Sbjct: 177 RLRSLLARGKTILLTTHFMEEAERLCDRLCVLE 209
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 94.8 bits (235), Expect = 2e-20
Identities = 68/239 (28%), Positives = 125/239 (52%), Gaps = 10/239 (4%)
Query: 12 LELKDISVTY----PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
++ + ++ TY P AL D++L + + + TALIG G+GKSTL Q + GL+ +G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 68 SISIFNQTVENALKADLIAYIPQTESIDWTFP---ILVEDVVMMGRYKHMNWRRVASNND 124
+++ + V + K I + + + + FP + E V+ + N+ +
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFG-IPKEKA 120
Query: 125 YRIVTEALENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
+I E LE VG++ ++ ELS GQ +RV +A LA + +V+++DEP A +D K
Sbjct: 121 EKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKAR 180
Query: 184 REMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKT-VLASGLTSDIFNEDNIQK 241
EM+ L +S+ +++ TH ++ + + D L+K +++ G SD+F E + K
Sbjct: 181 IEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLK 239
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter.
Length = 354
Score = 94.4 bits (235), Expect = 3e-20
Identities = 64/242 (26%), Positives = 113/242 (46%), Gaps = 27/242 (11%)
Query: 30 DVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKA-DL---- 84
D + +P +TA+ G +G+GK+TL + I GL D+G I + +T+ ++ K L
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 85 --IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVTEA--LENVGMSS 139
I Y+ Q + FP L V + G R + R ++ +E +G+
Sbjct: 75 RRIGYVFQEARL---FPHLSVRGNLRYGM-----KR---ARPSERRISFERVIELLGIGH 123
Query: 140 MRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DI 198
+ R G LS G+++RV + RAL ++++MDEP AA+D + E++ L+ L E I
Sbjct: 124 LLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGI 183
Query: 199 MILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTFGAQVSPQSSILNES 257
IL +H++ + DR + L+ V A+G ++++ L E
Sbjct: 184 PILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWA----SPDLPWLAREDQGSLIEG 239
Query: 258 NI 259
+
Sbjct: 240 VV 241
>gnl|CDD|184194 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 93.5 bits (233), Expect = 6e-20
Identities = 70/234 (29%), Positives = 117/234 (50%), Gaps = 13/234 (5%)
Query: 12 LELKDISVTY----PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
+ + + Y P AL DVN+ IP + A+IG G+GKSTL Q + GL+ G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 68 SISIFNQTVENALKADLIAYIPQTESIDWTFP--ILVEDVVMMG-RYKHMNWRRVASNND 124
+++I + + K + + + I + FP L E+ V + MN+ V+ +
Sbjct: 63 TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFG-VSEEDA 121
Query: 125 YRIVTEALENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
+ E +E VG+ + R ELS GQ +RV +A LA + +V+++DEP A +D K
Sbjct: 122 KQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGR 181
Query: 184 REMIFLLKSLLNEDIM--ILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIF 234
+EM+ + L E + +LV TH++ + D+ + + K TV G +IF
Sbjct: 182 KEMMEMFYKLHKEKGLTTVLV-THSMEDAARYADQIVVMHKGTVFLQGTPREIF 234
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 93.3 bits (232), Expect = 6e-20
Identities = 71/255 (27%), Positives = 128/255 (50%), Gaps = 13/255 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ + I ++ AL+ VNL + I AL+G NGAGKSTL + + G+ KG+I+I
Sbjct: 6 ISMAGIGKSFG-PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITI 64
Query: 72 FNQT---VENALKADL-IAYIPQTES-IDWTFPILVEDVVMMGRY--KHMNWRRVASNND 124
N +++ L A L I I Q S ID + V + + +GR+ K + + +
Sbjct: 65 NNINYNKLDHKLAAQLGIGIIYQELSVID---ELTVLENLYIGRHLTKKVCGVNIIDWRE 121
Query: 125 YRIVTEA-LENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
R+ L VG+ ++ LSI ++ + +A+ L ++VIIMDEP +++ K
Sbjct: 122 MRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEV 181
Query: 184 REMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKT 242
+ ++ L E I+ +H + I CDR +K + + SG+ SD+ N+D ++
Sbjct: 182 DYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLM 241
Query: 243 FGAQVSPQSSILNES 257
G ++ + + + E+
Sbjct: 242 VGRELQNRFNAMKEN 256
Score = 73.7 bits (181), Expect = 6e-14
Identities = 54/227 (23%), Positives = 99/227 (43%), Gaps = 18/227 (7%)
Query: 30 DVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVE-----NALKADL 84
D++ + I GL G+G++ L + G+ G I + + + +A+K
Sbjct: 281 DISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKG- 339
Query: 85 IAYIPQTESIDWTFP-------ILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALE--NV 135
+AYI ++ + FP + + + G YK ++ R E +
Sbjct: 340 MAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGA-MGLFHEVDEQRTAENQRELLAL 398
Query: 136 GMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLN 195
S+ Q I ELS G Q++V +++ L +VII DEP ID + E+ +++ L +
Sbjct: 399 KCHSVNQ-NITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD 457
Query: 196 EDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLT-SDIFNEDNIQK 241
+ +IL+ + + I + CDR + L LT D +E+ I
Sbjct: 458 DGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRDDMSEEEIMA 504
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 93.4 bits (232), Expect = 6e-20
Identities = 57/223 (25%), Positives = 117/223 (52%), Gaps = 14/223 (6%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTV------ENALK 81
+EDV+L + I L+G NGAGK+T F ++G++P D G+I I ++ + A +
Sbjct: 19 VEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARR 78
Query: 82 ADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMR 141
I Y+PQ SI + + ++ ++ + + E +E + +R
Sbjct: 79 G--IGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRAN-----ELMEEFHIEHLR 131
Query: 142 QRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMIL 201
LS G+++RV +ARALA + I++DEPFA +D + ++ +++ L + + +L
Sbjct: 132 DSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVL 191
Query: 202 VSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFNEDNIQKTF 243
++ HN+ + C+R I + ++A G ++I ++++++ +
Sbjct: 192 ITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQDEHVKRVY 234
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 93.5 bits (232), Expect = 6e-20
Identities = 64/210 (30%), Positives = 113/210 (53%), Gaps = 14/210 (6%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS---ISIFNQTVENA--LK 81
AL V+L I + AL+G +G+GKSTL + + GLI DK + I + +TV+ L
Sbjct: 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLA 78
Query: 82 ADLIAYIPQTESIDWTFPIL-----VEDVVMMGRYKHMNWR---RVASNNDYRIVTEALE 133
D+ T I F ++ +E+V++ WR + + +AL
Sbjct: 79 RDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALT 138
Query: 134 NVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSL 193
VGM +++ LS GQQ+RV +ARAL Q+++VI+ DEP A++D ++ R ++ L+ +
Sbjct: 139 RVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI 198
Query: 194 -LNEDIMILVSTHNINSIPSFCDRTIFLKK 222
N+ I ++V+ H ++ +C+R + L++
Sbjct: 199 NQNDGITVVVTLHQVDYALRYCERIVALRQ 228
>gnl|CDD|132456 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines.
Length = 382
Score = 91.4 bits (227), Expect = 2e-19
Identities = 54/170 (31%), Positives = 85/170 (50%), Gaps = 29/170 (17%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFN----QTVENALKA 82
+ + +L I E I L+GL+G+GKS+L +A+ GL P+ +GS+ + + V N A
Sbjct: 39 GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAA 98
Query: 83 DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY-------------RIVT 129
L +T + F ++ M W V N + + V
Sbjct: 99 TLRRL--RTHRVSMVFQ----------KFALMPWLTVEENVAFGLEMQGMPEAERRKRVD 146
Query: 130 EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
E LE VG++ ++ GELS G Q+RV LARA A + +++MDEPF+A+D
Sbjct: 147 EQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALD 196
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 90.9 bits (226), Expect = 3e-19
Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 42/213 (19%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L++ + Y G ALED+NL + + ++G +G GK+TL I G +P GSI++
Sbjct: 2 LQISHLYADYG-GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITL 60
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKH---MNWRRVASN------ 122
+ VE P E VV +++ + WR V N
Sbjct: 61 DGKPVEG----------PGAE----------RGVV----FQNEGLLPWRNVQDNVAFGLQ 96
Query: 123 -----NDYRIVT--EALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPF 175
R+ + L+ VG+ +R I +LS GQ++RV +ARALA Q++++DEPF
Sbjct: 97 LAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPF 156
Query: 176 AAIDFKTEREMIFLLKSLLNED-IMILVSTHNI 207
A+D T +M LL L E +L+ TH+I
Sbjct: 157 GALDAFTREQMQTLLLKLWQETGKQVLLITHDI 189
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 91.0 bits (226), Expect = 3e-19
Identities = 73/245 (29%), Positives = 123/245 (50%), Gaps = 21/245 (8%)
Query: 12 LELKDISVTYPNG-YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLI---PLDKG 67
+E K +S TYP+ AL D++ IP + TALIG NG+GKST+ + I GL+
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS 65
Query: 68 SISIFNQTVENALKADLIAYIPQTESIDWTFP------ILVEDVVMMGRYKHMNWRRVAS 121
I++ T L A + I + I + P V D V G + R V
Sbjct: 66 KITVDGIT----LTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG----LENRAVPR 117
Query: 122 NNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
+IV + L +VGM + LS GQ++RV +A LA + ++II+DE + +D
Sbjct: 118 PEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPA 177
Query: 182 TEREMIFLLKSLLNEDIMILVS-THNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNI 239
+ +++ L++ L ++ + ++S TH+I+ + D+ + L +LA G +IF++ +
Sbjct: 178 GKEQILKLIRKLKKKNNLTVISITHDIDE-ANMADQVLVLDDGKLLAQGSPVEIFSKVEM 236
Query: 240 QKTFG 244
K G
Sbjct: 237 LKEIG 241
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 90.7 bits (225), Expect = 3e-19
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 5/228 (2%)
Query: 12 LELKDISVTYPNG---YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
++L +I+ + G AL +V+L +P I +IG +GAGKSTL + + L GS
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 69 ISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
+ + Q + ++L Q I F +L V + + R V
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKV 121
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
TE L VG+ LS GQ++RV +ARALA +V++ DE +A+D T + ++
Sbjct: 122 TELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILE 181
Query: 189 LLKSLLNE-DIMILVSTHNINSIPSFCDR-TIFLKKTVLASGLTSDIF 234
LLK + + IL+ TH ++ + CD + ++ G S+IF
Sbjct: 182 LLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIF 229
>gnl|CDD|184126 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 89.9 bits (224), Expect = 7e-19
Identities = 53/216 (24%), Positives = 88/216 (40%), Gaps = 39/216 (18%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE +D++ G ++ + L G NG+GK+TL + I GL+P G+I +
Sbjct: 3 LEGEDLAC-VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKL 61
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMN--------------WR 117
+++ A+ Y+ G H N W
Sbjct: 62 DGGDIDDPDVAEACHYL--------------------G---HRNAMKPALTVAENLEFWA 98
Query: 118 RVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAA 177
+ I ALE VG++ + G LS GQ++RV LAR L + I+DEP AA
Sbjct: 99 AFLGGEELDIA-AALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAA 157
Query: 178 IDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSF 213
+D L+++ L + +++ +TH +P
Sbjct: 158 LDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPGA 193
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 89.7 bits (222), Expect = 8e-19
Identities = 65/231 (28%), Positives = 120/231 (51%), Gaps = 19/231 (8%)
Query: 25 YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVEN-ALK-- 81
Y E++ + IP+ TA+IG NG GKSTL + + L+ G + + + +++ A K
Sbjct: 20 YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEV 79
Query: 82 ADLIAYIPQTESIDWTFP--ILVEDVVMMGRYKHM----NWRRVASNNDYRIVTEALENV 135
A I + Q T P I V+++V GRY H WR+ D VT+A++
Sbjct: 80 ARRIGLLAQNA----TTPGDITVQELVARGRYPHQPLFTRWRK----EDEEAVTKAMQAT 131
Query: 136 GMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLN 195
G++ + + + LS GQ++R ++A LAQ++ ++++DEP +D + +++ LL L
Sbjct: 132 GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191
Query: 196 EDIMILVST-HNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTFG 244
E L + H++N + I L++ ++A G +I + I++ +G
Sbjct: 192 EKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYG 242
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 89.4 bits (222), Expect = 9e-19
Identities = 62/216 (28%), Positives = 107/216 (49%), Gaps = 21/216 (9%)
Query: 14 LKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFN 73
L+++SV++ L DV+L + I L+G NGAGKSTL + ++GL+ D+G I
Sbjct: 7 LENVSVSFGQRR-VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK--- 62
Query: 74 QTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALE 133
L+ I Y+PQ +D T P+ V + + R D + AL+
Sbjct: 63 --RNGKLR---IGYVPQKLYLDTTLPLTVN--------RFLRLRPGTKKED---ILPALK 106
Query: 134 NVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSL 193
V + + +LS G+ +RV LARAL + Q++++DEP +D + + L+ L
Sbjct: 107 RVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166
Query: 194 LNE-DIMILVSTHNINSIPSFCDRTIFLKKTVLASG 228
E D +L+ +H+++ + + D + L + SG
Sbjct: 167 RRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCSG 202
>gnl|CDD|184192 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 88.5 bits (220), Expect = 2e-18
Identities = 63/236 (26%), Positives = 113/236 (47%), Gaps = 18/236 (7%)
Query: 13 ELKDISVTYPNGYC-ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+++++S +YPN AL++V+ I E A++G NG+GKST+ + + GL+ G I I
Sbjct: 9 KVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI 68
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFP------ILVEDVVMMGRYKHMNWRRVASNNDY 125
+ + + I + I + P VED + G + ++V
Sbjct: 69 DG----ITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFG----LENKKVPPKKMK 120
Query: 126 RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTERE 185
I+ + + VGM ++ LS GQ++RV +A LA ++II DE + +D K +RE
Sbjct: 121 DIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180
Query: 186 MIFLLKSLLNEDIMILVS-THNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNI 239
+ ++ L L+S TH+++ D+ I + ++A G +I N I
Sbjct: 181 IKKIMVDLRKTRKKTLISITHDMDEA-ILADKVIVFSEGKLIAQGKPKEILNNKEI 235
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 87.8 bits (218), Expect = 3e-18
Identities = 65/232 (28%), Positives = 115/232 (49%), Gaps = 18/232 (7%)
Query: 12 LELKDISVTYPNGYC-ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
+ ++ IS YP+ AL+DV+ + E A++G NG+GKSTL + + GL+ + G+I+
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 71 IFNQTVENALKADLIAYI------PQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124
+ + D+ + P + + T V+D V G + V
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQFVGAT----VQDDVAFG----LENIGVPREEM 117
Query: 125 YRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
V +AL VGM R+ LS GQ++RV +A LA + +II+DE + +D + R
Sbjct: 118 VERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRR 177
Query: 185 EMIFLLKSLLNEDIMILVS-THNINSIPSFCDRTIFLKK-TVLASGLTSDIF 234
E++ ++ L + + ++S TH+++ + DR I + K +L G +IF
Sbjct: 178 EVLETVRQLKEQKGITVLSITHDLDEA-AQADRVIVMNKGEILEEGTPEEIF 228
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking
protein.
Length = 214
Score = 86.9 bits (216), Expect = 5e-18
Identities = 60/218 (27%), Positives = 101/218 (46%), Gaps = 14/218 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E ++S YP G AL DV+L I + L G +GAGK+TL + + G + +G + I
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 72 FNQTVENALKADLIAYIPQTESI---DWTFPIL----VEDVVMMGRYKHMNWRRVASNND 124
+ V N L+ + + + + D F +L V + V + + R
Sbjct: 62 AGEDV-NRLRGRQLPLLRRRIGVVFQD--FRLLPDRTVYENVALP----LEVRGKKEREI 114
Query: 125 YRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
R V AL VG+ +LS G+Q+RV +ARA+ +++ DEP +D
Sbjct: 115 QRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSE 174
Query: 185 EMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
++ LLK L ++V+TH+++ + R I L
Sbjct: 175 RILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDD 212
>gnl|CDD|184124 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 86.4 bits (214), Expect = 7e-18
Identities = 57/176 (32%), Positives = 93/176 (52%), Gaps = 8/176 (4%)
Query: 43 LIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTV-ENALKADL-IAYIPQTESIDWTFPI 100
L+G NGAGK+T + ++GL D GSIS+ + V A A + +PQ +++D F +
Sbjct: 38 LLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTV 97
Query: 101 LVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLAR 160
E++++ GRY ++ +V LE + + ++GELS G ++R+ LAR
Sbjct: 98 -RENLLVFGRYFGLSAAAAR-----ALVPPLLEFAKLENKADAKVGELSGGMKRRLTLAR 151
Query: 161 ALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDR 216
AL V+++DEP +D + M L+SLL IL++TH + CDR
Sbjct: 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR 207
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 86.4 bits (214), Expect = 7e-18
Identities = 80/270 (29%), Positives = 124/270 (45%), Gaps = 60/270 (22%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI--MG-LIP--LDK 66
L++ D+SV Y N AL V+L N ITALIG +G+GKSTL ++I M L P
Sbjct: 6 LQVSDLSVYY-NKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64
Query: 67 GSISIFNQTVENALKADLIAYIPQTESIDW------------TFPILVEDVVMMGRYKHM 114
GSI + Y P+T+++D FP+ + + V+ G
Sbjct: 65 GSIVYNGHNI----------YSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGL---- 110
Query: 115 NWRRVASNNDYRIVTEALENVGMSSMRQRQIGE------------LSIGQQKRVFLARAL 162
R+ D +++ EA+E S++ I + LS GQQ+RV +AR L
Sbjct: 111 ---RLKGIKDKQVLDEAVE----KSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163
Query: 163 AQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLK 221
A ++I++DEP +A+D + ++ L L ++ M+LV T ++ DRT FL
Sbjct: 164 ATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLV-TRSMQQASRISDRTGFFLD 222
Query: 222 KTVLASGLTSDIF-------NEDNIQKTFG 244
++ T +F ED I FG
Sbjct: 223 GDLIEYNDTKQMFMNPKHKETEDYISGKFG 252
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 85.4 bits (212), Expect = 1e-17
Identities = 63/199 (31%), Positives = 96/199 (48%), Gaps = 15/199 (7%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADL--- 84
L D+NL I I L G +G+GK+TL I GL + +GS+ + Q + A + +L
Sbjct: 21 LFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80
Query: 85 ---IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSM 140
I YI Q ++ L V M N + R LE VG+
Sbjct: 81 RRNIGYIFQAHNL---LGFLTARQNVQMALELQPNLSYQEARERAR---AMLEAVGLGDH 134
Query: 141 RQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNED-IM 199
LS GQ++RV +ARAL + ++++ DEP AA+D K+ R+++ L++ L E
Sbjct: 135 LDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCT 194
Query: 200 ILVSTHNINSIPSFCDRTI 218
IL+ TH+ N I DR +
Sbjct: 195 ILIVTHD-NRILDVADRIV 212
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 85.2 bits (211), Expect = 2e-17
Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 23/238 (9%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ + ++ Y AL++V+ + I +G NGAGKST + I G +P D GS+ +
Sbjct: 3 IRVSSLTKLYGTQN-ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV 61
Query: 72 FNQTV-ENALKAD-LIAYIPQTESIDWTFPILVEDVV------MMGRYKHMNWRRVASNN 123
+ V +N + I Y+P+ P+ ++ V + G Y M + +
Sbjct: 62 CGEDVLQNPKEVQRNIGYLPEHN------PLYLDMYVREYLQFIAGIYG-MKGQLLKQR- 113
Query: 124 DYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
V E +E VG+ + ++IG+LS G ++RV LA+AL +V+I+DEP +D
Sbjct: 114 ----VEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL 169
Query: 184 REMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQ 240
E+ ++K++ + +IL STH + + + CDR I + K ++A ++ + Q
Sbjct: 170 VEIRNVIKNIGKDKTIIL-STHIMQEVEAICDRVIIINKGKIVADKKLDELSAANKKQ 226
>gnl|CDD|130034 TIGR00960, 3a0501s02, Type II (General) Secretory Pathway (IISP)
Family protein.
Length = 216
Score = 84.8 bits (210), Expect = 2e-17
Identities = 57/221 (25%), Positives = 106/221 (47%), Gaps = 19/221 (8%)
Query: 12 LELKDISVTYPNGY-CALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
+ + +S YP G+ AL+++N I + + L+G +GAGKST + I+G+ +G I
Sbjct: 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIR 61
Query: 71 IFNQTVENALKADLIAYIPQTESIDWT-FPIL-----VEDVVMMGR---YKHMNWRRVAS 121
Q + L+ I ++ + + + +L ++V R + S
Sbjct: 62 FNGQDL-TRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVS 120
Query: 122 NNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
ALE VG+ +LS G+Q+RV +ARA+ K +++ DEP +D +
Sbjct: 121 --------AALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPE 172
Query: 182 TEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
R+++ L + +LV+TH+IN + ++ RT+ L +
Sbjct: 173 LSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSR 213
>gnl|CDD|182707 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 84.7 bits (210), Expect = 2e-17
Identities = 68/215 (31%), Positives = 110/215 (51%), Gaps = 12/215 (5%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L+LK I +P G AL L + + AL+G NGAGKST+ + + G+ D GSI
Sbjct: 5 LQLKGIDKAFP-GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILY 63
Query: 72 FNQTVE-NALKADL---IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYR 126
+ V N K+ I I Q ++ P L + + + +GR + R+ Y
Sbjct: 64 LGKEVTFNGPKSSQEAGIGIIHQELNL---IPQLTIAENIFLGREFVNRFGRIDWKKMYA 120
Query: 127 IVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
+ L + + + +GELSIG+Q+ V +A+ L+ +S+VIIMDEP A+ TE E
Sbjct: 121 EADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALT-DTETES 179
Query: 187 IF-LLKSLLNEDIMILVSTHNINSIPSFCDR-TIF 219
+F +++ L ++ I+ +H + I CD T+F
Sbjct: 180 LFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVF 214
Score = 57.3 bits (139), Expect = 4e-09
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 29/217 (13%)
Query: 5 VASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPL 64
+ G + LK +++ P + DV+ + + I + GL GAG++ L + + G +P
Sbjct: 249 LDKAPGEVRLKVDNLSGP----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPR 304
Query: 65 DKGSISIFNQTVEN-----ALKADLIAYIPQTESID-----------WTFPILVEDVVMM 108
G +++ V L I YI + D + L
Sbjct: 305 TSGYVTLDGHEVVTRSPQDGLANG-IVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAG 363
Query: 109 GRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQV 168
G KH + ++ S D+ L N+ SM Q IG LS G Q++V +AR L + +V
Sbjct: 364 GSLKHADEQQAVS--DFI----RLFNIKTPSMEQ-AIGLLSGGNQQKVAIARGLMTRPKV 416
Query: 169 IIMDEPFAAIDFKTEREMIFLLKSLLNEDI-MILVST 204
+I+DEP +D ++E+ L+ E + +ILVS+
Sbjct: 417 LILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSS 453
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 84.1 bits (208), Expect = 4e-17
Identities = 62/241 (25%), Positives = 126/241 (52%), Gaps = 19/241 (7%)
Query: 12 LELKDISVTYPNG----YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
+ ++S TY G + A+ DVN + A++G G+GKSTL Q I L+ G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 68 SISIFNQTVENALKADLIAYIPQTESIDWTFP--ILVEDVV----MMG-RYKHMNWRRVA 120
++++ + T+ + K I + + + + FP L ED V + G + MN V
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEV- 121
Query: 121 SNNDYRIVTEALENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
N +R++ + +G S + + ++S GQ +++ + LA +I++DEP A +D
Sbjct: 122 KNYAHRLLMD----LGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLD 177
Query: 180 FKTEREMIFLLKSL-LNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNED 237
+++R+++ LLKSL +E+ I++ +H++N + + D I +K+ ++++ ++F +
Sbjct: 178 PQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDK 237
Query: 238 N 238
Sbjct: 238 K 238
>gnl|CDD|181868 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 83.8 bits (208), Expect = 4e-17
Identities = 60/226 (26%), Positives = 113/226 (50%), Gaps = 13/226 (5%)
Query: 1 MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG 60
+ +S +EL+ IS ++ +G + +++L I L+G +G GK+T+ + I G
Sbjct: 4 LNKQPSSLSPLVELRGISKSF-DGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG 62
Query: 61 LIPLDKGSISIFNQTVEN--ALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWR 117
D G I + Q + + A + + Q+ ++ FP + V + V G + +
Sbjct: 63 FETPDSGRIMLDGQDITHVPAENRH-VNTVFQSYAL---FPHMTVFENVAFG----LRMQ 114
Query: 118 RVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAA 177
+ + V EAL V + QR+ +LS GQQ+RV +ARA+ K +V+++DE +A
Sbjct: 115 KTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSA 174
Query: 178 IDFKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK 222
+D+K ++M LK+L + I + TH+ + DR + ++
Sbjct: 175 LDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRD 220
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 83.6 bits (207), Expect = 5e-17
Identities = 82/271 (30%), Positives = 128/271 (47%), Gaps = 56/271 (20%)
Query: 9 KGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI--MG-LIPLD 65
G + +KD+ + Y + + AL+ +NL I EN +TALIG +G GKST + + M LIP
Sbjct: 1 MGKISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 66 K--GSISIFNQTVENALKADLIA------YIPQTESIDWTFPILVEDVVMMGRYKHMNWR 117
K G + + Q + + D+ + Q + FP+ + D V G
Sbjct: 60 KIEGEVLLDGQDIYKS-DIDVNQLRKRVGMVFQQPN---PFPMSIYDNVAYGP------- 108
Query: 118 RVASNNDYRIVTEALENVGMSSMRQRQIGE------------LSIGQQKRVFLARALAQK 165
R D + + E +E S++ + + LS GQQ+R+ +ARALA +
Sbjct: 109 RTHGIKDKKKLDEIVE----KSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVE 164
Query: 166 SQVIIMDEPFAAID----FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFL 220
+V++MDEP +A+D K E E+I LK +D I++ THN+ D+T FL
Sbjct: 165 PEVLLMDEPTSALDPISTLKIE-ELIQELK----KDYTIVIVTHNMQQASRISDKTAFFL 219
Query: 221 KKTVLASGLTSDIF-------NEDNIQKTFG 244
++ G T D+F ED I FG
Sbjct: 220 NGEIVEFGDTVDLFTNPKDKRTEDYITGRFG 250
>gnl|CDD|183001 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 83.7 bits (208), Expect = 5e-17
Identities = 77/250 (30%), Positives = 112/250 (44%), Gaps = 51/250 (20%)
Query: 13 ELKDISVTYP---NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSI 69
ELK+IS +P AL +V+L IP I +IG +GAGKSTL + I L G +
Sbjct: 3 ELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV 62
Query: 70 SIFNQTVENALKADL------IAYIPQTESIDWTFPILVEDVVMMGRYKHMNW---RRVA 120
+ Q + + +L I I Q H N R V
Sbjct: 63 LVDGQDLTALSEKELRKARRQIGMIFQ----------------------HFNLLSSRTVF 100
Query: 121 SN----------NDYRI---VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQ 167
N I VTE LE VG+S R +LS GQ++RV +ARALA +
Sbjct: 101 DNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160
Query: 168 VIIMDEPFAAIDFKTEREMIFLLKSLLNED--IMILVSTHNINSIPSFCDRTIFLKKTVL 225
V++ DE +A+D T R ++ LLK +N + + I++ TH ++ + CDR + L
Sbjct: 161 VLLCDEATSALDPATTRSILELLKD-INRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
Query: 226 A-SGLTSDIF 234
G S++F
Sbjct: 220 VEQGTVSEVF 229
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 83.5 bits (206), Expect = 5e-17
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 5/210 (2%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAY 87
L+ +NL + +T L+G NG GKSTLF + GL+ KG++ ++ + K L+A
Sbjct: 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAV-LWQGKPLDYSKRGLLAL 75
Query: 88 IPQTESI--DWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQI 145
Q ++ D I D+ + N V R V EAL V R + I
Sbjct: 76 RQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG-VPEAEITRRVDEALTLVDAQHFRHQPI 134
Query: 146 GELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTH 205
LS GQ+KRV +A AL +++ +++DEP A +D +MI +++ ++ + +++S+H
Sbjct: 135 QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSH 194
Query: 206 NINSIPSFCDRTIFLKK-TVLASGLTSDIF 234
+I+ I D L++ +L G ++F
Sbjct: 195 DIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
>gnl|CDD|130045 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters.
Length = 247
Score = 83.5 bits (207), Expect = 5e-17
Identities = 67/253 (26%), Positives = 123/253 (48%), Gaps = 37/253 (14%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG---- 67
+E++++++ Y AL+++NL IP+N +TALIG +G GKSTL +++ + L G
Sbjct: 2 IEIENLNLFY-GEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 68 ------SISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMG-RYKHMNWRRVA 120
I+++ ++ + + Q + FP+ + D + G R + ++
Sbjct: 61 GKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN---PFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 121 SNNDYRIVTEALENVGM----------SSMRQRQIGELSIGQQKRVFLARALAQKSQVII 170
IV E+L+ + S++ LS GQQ+R+ +ARALA + +V++
Sbjct: 118 D----EIVEESLKKAALWDEVKDRLHDSALG------LSGGQQQRLCIARALAVEPEVLL 167
Query: 171 MDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLAS-GL 229
+DEP +A+D ++ L++ L + I++ THN+ DRT F L G
Sbjct: 168 LDEPTSALDPIATGKIEELIQE-LKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226
Query: 230 TSDIFNEDNIQKT 242
T IF ++T
Sbjct: 227 TEQIFTNPKEKRT 239
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 83.3 bits (206), Expect = 6e-17
Identities = 65/230 (28%), Positives = 113/230 (49%), Gaps = 12/230 (5%)
Query: 12 LELKDISVTY-PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
+ K++S Y + L+DV+ IP+ T+++G NG+GKST+ + ++G+ + G I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 71 IFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI 127
NQ + + L I + Q + I+ DV G H V + +R
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAF-GLENHA----VPYDEMHRR 122
Query: 128 VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
V+EAL+ V M + LS GQ++RV +A LA VII+DE + +D + ++
Sbjct: 123 VSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL 182
Query: 188 FLLKSL-LNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFN 235
L++ + +I I+ TH+++ D I + K TV G ++IF+
Sbjct: 183 DLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFD 231
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 83.4 bits (207), Expect = 6e-17
Identities = 71/221 (32%), Positives = 112/221 (50%), Gaps = 25/221 (11%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L I T+P G AL+D++ + AL+G NGAGKSTL + + G D GSI I
Sbjct: 5 LSFDGIGKTFP-GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILI 63
Query: 72 ------FNQTVENALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKH----MNWRRVA 120
F T AL A +A I Q + P + V + + +G+ H +N R +
Sbjct: 64 DGQEMRFASTTA-ALAAG-VAIIYQELHL---VPEMTVAENLYLGQLPHKGGIVNRRLL- 117
Query: 121 SNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDF 180
E LE++G+ + LSIGQ++ V +A+ALA+ ++VI DEP +++
Sbjct: 118 ----NYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173
Query: 181 KTEREMIF-LLKSLLNEDIMILVSTHNINSIPSFCDR-TIF 219
+ E E +F +++ L E +IL +H + I + CD T+F
Sbjct: 174 R-EIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVF 213
Score = 64.9 bits (159), Expect = 2e-11
Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 18/224 (8%)
Query: 29 EDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVE-----NALKAD 83
E ++ + I L GL GAG+S L + + G G + + + ++ +A++A
Sbjct: 270 EPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAG 329
Query: 84 LIAYIPQTESIDWTFPI--LVEDVVMMGRYKHMNW------RRVASNNDYRIVTEALENV 135
I P+ + P+ + +++ + R H+ R A N D I N+
Sbjct: 330 -IMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFI---RSLNI 385
Query: 136 GMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLN 195
S Q I LS G Q++ L R L++ +VI++DEP ID + E+ ++ L
Sbjct: 386 KTPSREQ-LIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA 444
Query: 196 EDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNI 239
+ + +L + ++ + DR + +++ +A L + E
Sbjct: 445 QGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQATERQA 488
>gnl|CDD|184197 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 82.8 bits (205), Expect = 8e-17
Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 23/241 (9%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI--FNQTVENALKADL 84
AL++VN+ I + LIG G+GKSTL Q + GL+ G I I + T + +D
Sbjct: 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSD- 80
Query: 85 IAYIPQTESIDWTFP--ILVEDVVMMGRYKHMNW--RRVASNND--YRIVTEALENVGMS 138
I + + + +P L E+ + K + + + + + V A+ VG+
Sbjct: 81 ---IRKKVGLVFQYPEYQLFEETI----EKDIAFGPINLGLSEEEIENRVKRAMNIVGLD 133
Query: 139 --SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE 196
+ + ELS GQ++RV +A +A + +++I+DEP A +D K E++ +K L E
Sbjct: 134 YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKE 193
Query: 197 DIM--ILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTFGAQVSPQSSI 253
M ILVS H++ + DR I + K G ++F E ++ G V PQ +
Sbjct: 194 YNMTIILVS-HSMEDVAKLADRIIVMNKGKCELQGTPREVFKEVETLESIGLAV-PQVTY 251
Query: 254 L 254
L
Sbjct: 252 L 252
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 82.8 bits (204), Expect = 9e-17
Identities = 71/237 (29%), Positives = 121/237 (51%), Gaps = 29/237 (12%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD-----KGSISIFNQTVE----- 77
LE V++ I ++ +TA+IG +G GKST + + + L+ +G + FNQ +
Sbjct: 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82
Query: 78 -NALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVG 136
N L+ + P+ FP+ V D V G K + WR +D IV AL++
Sbjct: 83 LNRLRRQVSMVHPKPN----LFPMSVYDNVAYG-VKIVGWRPKLEIDD--IVESALKDAD 135
Query: 137 MSSMRQRQIG----ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKS 192
+ + +I +LS GQQ+R+ +ARALA K +V++MDEP +D ++ L++S
Sbjct: 136 LWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS 195
Query: 193 L-LNEDIMILVSTHNINSIPSFCDRTIFLKKT------VLASGLTSDIFNEDNIQKT 242
L L ++ +++ +HN++ + D T F K ++ GLT IFN + +T
Sbjct: 196 LRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNSPHDSRT 252
>gnl|CDD|183003 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 80.6 bits (200), Expect = 4e-16
Identities = 66/235 (28%), Positives = 109/235 (46%), Gaps = 49/235 (20%)
Query: 6 ASTKGGLELKDISVTYPNG-YCALEDVNLFIPENTITALIGLNGAGKSTLFQ-------A 57
A+ + L L ++S TYP+ L+ ++L I AL+G G GKSTL Q
Sbjct: 333 AADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDP 392
Query: 58 IMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWR 117
G I L+ I+ ++ E AL+ I+ + Q + F + D N
Sbjct: 393 QQGEILLNGQPIADYS---EAALRQ-AISVVSQRVHL---FSATLRD----------NLL 435
Query: 118 RVASNNDYRIVTEALENVGMSSMRQRQ------IGE----LSIGQQKRVFLARALAQKSQ 167
A N + E L+ VG+ + + +GE LS G+Q+R+ +ARAL +
Sbjct: 436 LAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAP 495
Query: 168 VIIMDEPFAAIDFKTEREMIFLL------KSLLNEDIMILVSTHNINSIPSFCDR 216
++++DEP +D +TER+++ LL K++ +MI TH + + F DR
Sbjct: 496 LLLLDEPTEGLDAETERQILELLAEHAQNKTV----LMI---THRLTGLEQF-DR 542
>gnl|CDD|184595 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 80.0 bits (197), Expect = 6e-16
Identities = 73/251 (29%), Positives = 120/251 (47%), Gaps = 33/251 (13%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E+++++ TY + L++VNL IP+N++TALIG +G GKST + + + L I
Sbjct: 4 IEVENLN-TYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDL----IPG 58
Query: 72 FNQTVENALKADLIAYIPQTESIDW------------TFPILVEDVVMMGRYKHMNWRRV 119
F L I Y P + ++ FP + D V G H
Sbjct: 59 FRHEGHIYLDGVDI-YDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGE---- 113
Query: 120 ASNNDY--RIVTEALENVGM-----SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMD 172
+ D+ V E+L+ + + + +G LS GQQ+R+ +AR +A +VI+MD
Sbjct: 114 -DDEDFIEERVEESLKAAALWDEVKDKLDKSALG-LSGGQQQRLCIARTIAVSPEVILMD 171
Query: 173 EPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTS 231
EP +A+D + ++ L+ L ED I++ THN+ T FL ++ SGLT
Sbjct: 172 EPCSALDPISTTKIEDLIHK-LKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTD 230
Query: 232 DIFNEDNIQKT 242
IF ++T
Sbjct: 231 QIFINPKDKRT 241
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 79.7 bits (197), Expect = 9e-16
Identities = 67/247 (27%), Positives = 119/247 (48%), Gaps = 20/247 (8%)
Query: 1 MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG 60
M+T+ + L + IS Y +G L+ ++ + + AL+G NGAGKSTL + I G
Sbjct: 1 MQTSDTTAPPLLCARSISKQY-SGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG 59
Query: 61 LIPLDKGSISIFNQTVENA--LKADL--IAYIPQTESIDWTFPIL-VEDVVMMGRYKHMN 115
++P D G++ I KA I +PQ + FP L V++ ++ G K
Sbjct: 60 IVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLL---FPNLSVKENILFGLPKRQ- 115
Query: 116 WRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPF 175
+ + + L +G G L + ++ V + R L + S+++I+DEP
Sbjct: 116 -------ASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPT 168
Query: 176 AAID-FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLA-SGLTSDI 233
A++ +TER + ++ LL + + I+ +H + I DR ++ +A SG T+D+
Sbjct: 169 ASLTPAETER-LFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
Query: 234 FNEDNIQ 240
+D IQ
Sbjct: 228 STDDIIQ 234
Score = 53.9 bits (130), Expect = 4e-08
Identities = 55/238 (23%), Positives = 104/238 (43%), Gaps = 24/238 (10%)
Query: 30 DVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQ-----TVENALKADL 84
+++L + I L G+ GAG++ L + + GL P G I + + + L L
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340
Query: 85 IAYIPQTE---------SIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENV 135
+ Y+P+ + W L + G + R A YR AL N+
Sbjct: 341 V-YLPEDRQSSGLYLDAPLAWNVCALTHN--RRGFWIKPA-RENAVLERYR---RAL-NI 392
Query: 136 GMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLN 195
+ Q LS G Q++V +A+ L Q++I+DEP +D ++ L++S+
Sbjct: 393 KFNHAEQ-AARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA 451
Query: 196 EDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNI-QKTFGAQVSPQSS 252
+++ +L + ++ I DR + + + ++ LT N D I + FG + ++S
Sbjct: 452 QNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMRLAFGEHQAQEAS 509
>gnl|CDD|163251 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity.
Length = 242
Score = 79.5 bits (197), Expect = 9e-16
Identities = 66/232 (28%), Positives = 114/232 (49%), Gaps = 31/232 (13%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L L+ +SV++ +G+ AL D++L++ + +IG NGAGK+T+ I G D+GS+ +
Sbjct: 3 LYLEGLSVSF-DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV-L 60
Query: 72 FNQTVENALKADLIAYIP-----QTESIDWTFPIL-VEDVVMM------GRYKHMNWRRV 119
F T L IA Q ++ F L V + + + + + +R
Sbjct: 61 FGGTDLTGLPEHQIARAGIGRKFQKPTV---FENLTVFENLELALPRDKSVFASLFFRLS 117
Query: 120 ASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
A D + E LE +G++ R G LS GQ++ + + L Q +++++DEP A +
Sbjct: 118 AEEKD--RIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM- 174
Query: 180 FKTEREMIF---LLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASG 228
T+ E LLKSL + +++V H++ + R+I K TVL G
Sbjct: 175 --TDEETEKTAELLKSLAGKHSVVVVE-HDMEFV-----RSIADKVTVLHQG 218
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 79.4 bits (196), Expect = 1e-15
Identities = 66/226 (29%), Positives = 113/226 (50%), Gaps = 30/226 (13%)
Query: 12 LELKDISVTYPNG--YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSI 69
+E+K+++ Y L DV+ + + ++IG NG+GKST + I GL+ + G I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 70 SIFNQ--TVENAL-KADLIAYI---PQTESIDWTFPILVEDVVMMG------RYKHMNWR 117
I T EN I + P + + T VED V G ++ M R
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGAT----VEDDVAFGLENKGIPHEEMKER 120
Query: 118 RVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAA 177
V EALE VGM ++R+ LS GQ++RV +A A+A + ++II+DE +
Sbjct: 121 ----------VNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSM 170
Query: 178 IDFKTEREMIFLLKSLLNEDIMILVS-THNINSIPSFCDRTIFLKK 222
+D + E+I +K + ++ M ++S TH+++ + + DR + +K
Sbjct: 171 LDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKN 215
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 79.0 bits (195), Expect = 1e-15
Identities = 62/201 (30%), Positives = 100/201 (49%), Gaps = 12/201 (5%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAY 87
L +++L I + + +IG +G+GKSTL + I L + G + + V N K D
Sbjct: 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKV-NDPKVD-ERL 74
Query: 88 IPQTESIDWT----FPILVE-DVVMMGRYKHMNWRRVASNNDYR-IVTEALENVGMSSMR 141
I Q + + FP L + VM G + R AS + E L VG++
Sbjct: 75 IRQEAGMVFQQFYLFPHLTALENVMFGPLR----VRGASKEEAEKQARELLAKVGLAERA 130
Query: 142 QRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMIL 201
ELS GQQ+RV +ARALA K ++++ DEP +A+D + E++ +++ L E + ++
Sbjct: 131 HHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMV 190
Query: 202 VSTHNINSIPSFCDRTIFLKK 222
+ TH I R IF+ K
Sbjct: 191 IVTHEIGFAEKVASRLIFIDK 211
>gnl|CDD|163196 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely.
Length = 353
Score = 78.9 bits (195), Expect = 1e-15
Identities = 55/169 (32%), Positives = 83/169 (49%), Gaps = 26/169 (15%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
AL+D++L + + L+G +G GK+TL + I GL G+I + D+
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR--------DITR 70
Query: 87 YIPQTESIDW--------TFPIL-VEDVVMMGRY-KHMNWRRVASNNDYRIVTEALENVG 136
PQ D+ FP L V D + G + M VA V E L+ VG
Sbjct: 71 LPPQKR--DYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAER-----VAELLDLVG 123
Query: 137 MSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTERE 185
+ ++ G+LS GQQ+RV LARALA ++++DEP +A+D + RE
Sbjct: 124 LPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR-VRE 171
>gnl|CDD|184589 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 78.9 bits (194), Expect = 2e-15
Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 17/243 (6%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIM---GLIPLDKGS 68
LE+KD+S+ Y A+ D+++ I ++ +TALIG +G GKST ++I LIP +
Sbjct: 22 LEVKDLSIYYGEKR-AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSE 80
Query: 69 ISI----FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124
I N N +L I FP + + + K+ RR + ++
Sbjct: 81 GEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHA-LKYAGERRKSVLDE 139
Query: 125 YRIVTEALENVGMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDF 180
IV E+L + + ++ LS GQQ+R+ +AR LA K V+++DEP +A+D
Sbjct: 140 --IVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDP 197
Query: 181 KTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFNEDNI 239
+ ++ L+ L E+ I++ THN+ DRT FL ++ T IF
Sbjct: 198 ISNAKIEELITE-LKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQ 256
Query: 240 QKT 242
QKT
Sbjct: 257 QKT 259
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 78.4 bits (194), Expect = 2e-15
Identities = 71/252 (28%), Positives = 110/252 (43%), Gaps = 57/252 (22%)
Query: 30 DVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQT-VENALKADL---- 84
VNL +P ITA+ G +GAGK++L AI GL KG I + + + L
Sbjct: 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75
Query: 85 --IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMS-SMR 141
I Y+ Q + FP H +V N Y GM+ SM
Sbjct: 76 RRIGYVFQDARL---FP-------------HY---KVRGNLRY----------GMAKSMV 106
Query: 142 Q----------------RQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTERE 185
R G LS G+++RV + RAL ++++MDEP A++D +RE
Sbjct: 107 AQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166
Query: 186 MIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTF 243
++ L+ L E +I IL +H+++ I DR + L++ V A G +++ ++
Sbjct: 167 LLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMRPWL 226
Query: 244 GAQVSPQSSILN 255
QSSIL
Sbjct: 227 --PKEEQSSILK 236
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 78.5 bits (193), Expect = 2e-15
Identities = 78/243 (32%), Positives = 121/243 (49%), Gaps = 34/243 (13%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAI------------MGLIPLDKGSISIFNQ 74
A++DV++ PEN++TA+IG +G GKST+ ++I G I LD I +++
Sbjct: 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDI--YDR 76
Query: 75 TVENALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVTEALE 133
V+ + + Q + FP + + D V+ G YK +N R S D IV +L+
Sbjct: 77 GVDPVSIRRRVGMVFQKPN---PFPAMSIYDNVIAG-YK-LNGRVNRSEAD-EIVESSLK 130
Query: 134 NVGM-SSMRQRQIG---ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
V + ++ R ELS GQQ+R+ +AR +A K +VI+MDEP +A+D + ++ L
Sbjct: 131 RVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEEL 190
Query: 190 LKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLAS-GLTSDIF-------NEDNIQK 241
++ L E I++ THN+ D T F L G T IF ED I
Sbjct: 191 IEE-LKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEKKQTEDYITG 249
Query: 242 TFG 244
FG
Sbjct: 250 RFG 252
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 78.4 bits (194), Expect = 2e-15
Identities = 50/179 (27%), Positives = 94/179 (52%), Gaps = 27/179 (15%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E +++S + ++D++ +P I +IG NGAGKSTLF+ I G D G+I I
Sbjct: 323 IEAENLSKGF-GDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI 381
Query: 72 FNQTVENALKADLIAYIPQT-ESIDWTFPILVE-----DVVMMGRYKHMNWRRVASNNDY 125
+TV+ +AY+ Q+ +++D + E D++ +G+ + + R ++
Sbjct: 382 -GETVK-------LAYVDQSRDALDPNKTVWEEISGGLDIIQLGKRE-VPSRAYVGRFNF 432
Query: 126 RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
+ S +Q+++G+LS G++ RV LA+ L V+++DEP +D +T R
Sbjct: 433 K-----------GSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLR 480
Score = 45.7 bits (109), Expect = 1e-05
Identities = 47/194 (24%), Positives = 81/194 (41%), Gaps = 45/194 (23%)
Query: 14 LKDISVTYPNGYCALEDVNL-FIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIF 72
+ +S P L+D++L F P I ++GLNGAGKSTL + + G +DK
Sbjct: 7 MNRVSKVVPPKKEILKDISLSFFPGAKI-GVLGLNGAGKSTLLRIMAG---VDKEFNG-- 60
Query: 73 NQTVENALKADL-IAYIPQTESIDWTFPILVEDVVMMG---------RYKHMNWRRVASN 122
E + + Y+PQ +D T V + V G R+ ++ + +
Sbjct: 61 ----EARPAPGIKVGYLPQEPQLDPT--KTVRENVEEGVAEIKDALDRFNEISAKFAEPD 114
Query: 123 NDYRIVTE---ALEN---------------VGMSSMR----QRQIGELSIGQQKRVFLAR 160
D + L+ + M ++R + +LS G+++RV L R
Sbjct: 115 ADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCR 174
Query: 161 ALAQKSQVIIMDEP 174
L K ++++DEP
Sbjct: 175 LLLSKPDMLLLDEP 188
>gnl|CDD|179632 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 78.1 bits (193), Expect = 2e-15
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 19/219 (8%)
Query: 40 ITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLI---AYIPQTESIDW 96
I L+G NGAGKSTL + GL+P GSI Q +E A+L AY+ Q ++
Sbjct: 24 ILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTP-- 80
Query: 97 TFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRV 156
F + V + + + VAS + E E +G+ R + +LS G+ +RV
Sbjct: 81 PFAMPVFQYLTLHQPDKTRTEAVAS-----ALNEVAEALGLDDKLGRSVNQLSGGEWQRV 135
Query: 157 FLARALAQ-------KSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINS 209
LA + Q Q++++DEP ++D + + LL L + I +++S+H++N
Sbjct: 136 RLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH 195
Query: 210 IPSFCDRTIFLKKTVL-ASGLTSDIFNEDNIQKTFGAQV 247
DR LK+ L ASG ++ +N+ + FG
Sbjct: 196 TLRHADRVWLLKQGKLLASGRRDEVLTPENLAQVFGVNF 234
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease.
Length = 2272
Score = 78.1 bits (192), Expect = 2e-15
Identities = 55/203 (27%), Positives = 105/203 (51%), Gaps = 11/203 (5%)
Query: 17 ISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTV 76
+ + P+G A++ +N+ EN ITA +G NGAGK+T + GL+P G++ + + +
Sbjct: 935 VKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994
Query: 77 ENALKA--DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEA-LE 133
E L A + PQ +I + + E ++ + K +W + ++ EA LE
Sbjct: 995 ETNLDAVRQSLGMCPQ-HNILFHHLTVAEHILFYAQLKGRSW------EEAQLEMEAMLE 1047
Query: 134 NVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSL 193
+ G+ R + +LS G Q+++ +A A ++V+++DEP + +D + R + LL
Sbjct: 1048 DTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107
Query: 194 LNEDIMILVSTHNINSIPSFCDR 216
+ +I+ STH+++ DR
Sbjct: 1108 RSGRTIIM-STHHMDEADLLGDR 1129
Score = 62.3 bits (151), Expect = 1e-10
Identities = 42/187 (22%), Positives = 94/187 (50%), Gaps = 16/187 (8%)
Query: 42 ALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADL---IAYIPQTESIDWTF 98
L+G+NGAGK+T F+ + G + G ++ +++ + +D+ + Y PQ ++ID
Sbjct: 1969 GLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNI-SDVHQNMGYCPQFDAID--- 2024
Query: 99 PILVEDVVMMGR---YKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKR 155
++ GR Y + R V + ++ +++++G+S R G S G +++
Sbjct: 2025 ------DLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRK 2078
Query: 156 VFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCD 215
+ A AL ++++DEP +D + R + + S++ E +++++H++ + C
Sbjct: 2079 LSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCT 2138
Query: 216 RTIFLKK 222
R + K
Sbjct: 2139 RLAIMVK 2145
>gnl|CDD|162243 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c.
Length = 198
Score = 78.2 bits (193), Expect = 2e-15
Identities = 46/185 (24%), Positives = 77/185 (41%), Gaps = 50/185 (27%)
Query: 42 ALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVEN-----------------ALKADL 84
+ G NG GK+TL + + GL+ D G + +N T LK +L
Sbjct: 30 QVTGPNGIGKTTLLRILAGLLRPDSGEV-RWNGTALAEQRDEPHRNILYLGHLPGLKPEL 88
Query: 85 IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQ 144
A E++ + W + R + +AL VG++
Sbjct: 89 SA----LENLHF-------------------WAAIHGGAQ-RTIEDALAAVGLTGFEDLP 124
Query: 145 IGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDI----MI 200
+LS GQQ+R+ LAR ++ + I+DEP A+D + + LL LL + ++
Sbjct: 125 AAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD----KAGVALLAGLLRAHLARGGIV 180
Query: 201 LVSTH 205
L++TH
Sbjct: 181 LLTTH 185
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 77.9 bits (192), Expect = 3e-15
Identities = 75/270 (27%), Positives = 122/270 (45%), Gaps = 50/270 (18%)
Query: 5 VASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTL---FQAIMGL 61
+ T+ L ++++V Y + + A+++V L IP+N ITA IG +G GKST+ F + L
Sbjct: 4 LNGTETVLRTENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDL 62
Query: 62 IPLDK--GSI-----SIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHM 114
IP + G + +++ V+ I + Q + FP + D + G
Sbjct: 63 IPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN---PFPKSIYDNIAYG----- 114
Query: 115 NWRRVASNNDYRIVTEALENVGMSSMRQ-----------RQIG-ELSIGQQKRVFLARAL 162
A N Y+ ++ + S+RQ +Q G LS GQQ+R+ +ARA+
Sbjct: 115 -----ARINGYKG---DMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166
Query: 163 AQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
A + +VI+MDEP +A+D + + L+ L E I++ THN+ D T F
Sbjct: 167 AVQPEVILMDEPCSALDPISTLRIEELMHE-LKEQYTIIIVTHNMQQAARVSDMTAFFNV 225
Query: 223 TVLASGL----------TSDIFNEDNIQKT 242
+ G T IFN Q T
Sbjct: 226 ELTEGGGRYGYLVEFDRTEKIFNSPQQQAT 255
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 78.0 bits (192), Expect = 3e-15
Identities = 77/268 (28%), Positives = 121/268 (45%), Gaps = 43/268 (16%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQA------------IM 59
L ++D+ V Y + + AL+ V++ IPE ++TALIG +G GKST + I
Sbjct: 46 LSVEDLDVYYGDDH-ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARID 104
Query: 60 GLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRR- 118
G + LD I+ V + + Q+ + FP + + + G KH +
Sbjct: 105 GSVELD--GQDIYQDGVNLVELRKRVGMVFQSPN---PFPKSIRENISYGPRKHGDINTG 159
Query: 119 VASNNDYRIVTEALENVGMSSMRQRQIGE------------LSIGQQKRVFLARALAQKS 166
+ + R +A + + S+RQ + + LS GQQ+R+ +AR LA
Sbjct: 160 LLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDP 219
Query: 167 QVIIMDEPFAAID-FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTV 224
+VI+MDEP +A+D T + I L L E+ ++V THN+ D+T +FL
Sbjct: 220 EVILMDEPASALDPIATSK--IEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGE 277
Query: 225 LAS-GLTSDIFN-------EDNIQKTFG 244
L T IF ED I FG
Sbjct: 278 LVEYDDTDKIFENPESQRVEDYITGKFG 305
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included).
Length = 325
Score = 77.5 bits (191), Expect = 3e-15
Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 23/227 (10%)
Query: 43 LIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFP--- 99
L+G +G GK+TL + + G D GSI + + D+ P I+ F
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGE--------DVTNVPPHLRHINMVFQSYA 52
Query: 100 ----ILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKR 155
+ VE+ V G + R+V V EAL V + R+ +LS GQQ+R
Sbjct: 53 LFPHMTVEENVAFG----LKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQR 108
Query: 156 VFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSFC 214
V LARAL K +++++DEP +A+D K +M LK++ + I + TH+ +
Sbjct: 109 VALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMS 168
Query: 215 DRTIFLKKTVLAS-GLTSDIFNEDNIQKTFGAQVSPQSSILNESNIQ 260
DR ++K +A G +I+ E F A+ + ++ + I+
Sbjct: 169 DRIAIMRKGKIAQIGTPEEIYEEPA--NLFVARFIGEINVFEATVIE 213
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 77.4 bits (191), Expect = 3e-15
Identities = 63/232 (27%), Positives = 108/232 (46%), Gaps = 34/232 (14%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L L +S Y L ++L IP A++G +G GKSTL + + GL
Sbjct: 13 LLLNAVSKRY-GERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGL---------- 61
Query: 72 FNQTVENALKADLIA-YIPQTESIDWTFPILVEDVVMMGR-YKHMNWRRVASN------N 123
E +L+A P E+ + D +M + + + W++V N
Sbjct: 62 -----ETPSAGELLAGTAPLAEARE--------DTRLMFQDARLLPWKKVIDNVGLGLKG 108
Query: 124 DYR-IVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
+R +AL VG++ LS GQ++RV LARAL + ++++DEP A+D T
Sbjct: 109 QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 183 EREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDI 233
EM L++SL + +L+ TH+++ + DR + +++ + LT D+
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDL 220
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 77.1 bits (190), Expect = 5e-15
Identities = 60/221 (27%), Positives = 104/221 (47%), Gaps = 37/221 (16%)
Query: 8 TKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
G +++ ++S Y + L+++NL +P AL+G G+GKSTL +MG PL +G
Sbjct: 337 QSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396
Query: 68 SISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDV----VMMGRYKHMNWRRVA 120
I + + + + + L +A + Q P+++ D V +GR
Sbjct: 397 EIRLDGRPLSSLSHSVLRQGVAMVQQD-------PVVLADTFLANVTLGR---------- 439
Query: 121 SNNDYRIVTEALENV-------GMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVI 169
+ V +ALE V + +GE LS+GQ++ + LAR L Q Q++
Sbjct: 440 -DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL 498
Query: 170 IMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSI 210
I+DE A ID TE+ + L + E ++V H +++I
Sbjct: 499 ILDEATANIDSGTEQAIQQALA-AVREHTTLVVIAHRLSTI 538
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 76.8 bits (189), Expect = 6e-15
Identities = 64/254 (25%), Positives = 113/254 (44%), Gaps = 36/254 (14%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQA------------IM 59
++++ + Y AL+ +NL IP +TALIG +G GKSTL + I
Sbjct: 4 FNIENLDLFYGENQ-ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKIT 62
Query: 60 GLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRV 119
G + +D I + +K ++ P FP+ + + V G R
Sbjct: 63 GKLTMDGEDIYGNIDVADLRIKVGMVFQKPNP------FPMSIYENVAYGL-------RA 109
Query: 120 ASNNDYRIVTEALENVGMSSMRQRQIGE--------LSIGQQKRVFLARALAQKSQVIIM 171
D +++ E +E + ++ + LS GQQ+R+ +AR +A + VI+M
Sbjct: 110 QGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILM 169
Query: 172 DEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLT 230
DEP +A+D ++ L++ L ++ I++ TH++ DRT FL ++ T
Sbjct: 170 DEPTSALDPIATHKIEELMEE-LKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDT 228
Query: 231 SDIFNEDNIQKTFG 244
IF+ +T G
Sbjct: 229 QVIFSNPKDDRTQG 242
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 76.9 bits (189), Expect = 6e-15
Identities = 74/260 (28%), Positives = 126/260 (48%), Gaps = 32/260 (12%)
Query: 2 KTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI--- 58
AV + ++ +++ Y + AL+++NL IPEN +TA+IG +G GKST + +
Sbjct: 4 TEAVM-KQEVYQINGMNLWY-GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLM 61
Query: 59 MGLIPLDK--GSISIFNQTVENALK-----ADLIAYIPQTESIDWTFPILVEDVVMMGRY 111
+ ++P K G + +N + N LK +L I FP + D V G
Sbjct: 62 IQMVPNVKLTGEM-NYNGS--NILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPR 118
Query: 112 KHMNWRRVASNNDYRIVTEALENVGM-----SSMRQRQIGELSIGQQKRVFLARALAQKS 166
H + IV ++L++V + + + + LS GQQ+R+ +ARALA
Sbjct: 119 IHGTKNKKKLQ---EIVEKSLKDVALWDEVKDRLHTQALS-LSGGQQQRLCIARALATNP 174
Query: 167 QVIIMDEPFAAIDFKTER---EMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKK 222
V++MDEP +A+D + R E+I LK E I++ THN+ D+T F
Sbjct: 175 DVLLMDEPTSALDPVSTRKIEELILKLK----EKYTIVIVTHNMQQAARVSDQTAFFYMG 230
Query: 223 TVLASGLTSDIFNEDNIQKT 242
++ T+ +F+ + Q+T
Sbjct: 231 ELVECNDTNKMFSNPDDQRT 250
>gnl|CDD|172753 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 76.6 bits (188), Expect = 6e-15
Identities = 72/256 (28%), Positives = 109/256 (42%), Gaps = 52/256 (20%)
Query: 1 MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTL---FQA 57
+ E++ + V Y G+ AL DV+L IP I A IG +G GKSTL F
Sbjct: 10 DSATINPDHSVFEVEGVKVFY-GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNR 68
Query: 58 IMGLIPLDK--GSISIFNQTVE----NALKA-------------------DLIAYIPQTE 92
+ LIP K G + ++ + N++K + IA+ P+
Sbjct: 69 MNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRAN 128
Query: 93 SIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQ 152
LVED + RR A + V + L+ G + LS GQ
Sbjct: 129 GYKGNLDELVEDSL----------RRAAIWEE---VKDKLKEKGTA---------LSGGQ 166
Query: 153 QKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPS 212
Q+R+ +ARA+A K V++MDEP +A+D + R++ L L E I++ THN+
Sbjct: 167 QQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE-LKEQYTIIMVTHNMQQASR 225
Query: 213 FCDRTIFLKKTVLASG 228
D T F + G
Sbjct: 226 VADWTAFFNTEIDEYG 241
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 76.7 bits (189), Expect = 7e-15
Identities = 61/239 (25%), Positives = 116/239 (48%), Gaps = 20/239 (8%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE K++S + A+ +++L +P+N++ L+G NGAGKSTL + I G++ G I
Sbjct: 1 LETKNLSKRFGK-QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIF 59
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASN---NDYRIV 128
+ + I ES P L E++ N + + D RI
Sbjct: 60 DGHPWTRKDLHKIGSLI---ES-----PPLYENLT-----ARENLKVHTTLLGLPDSRI- 105
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
E L V +++ +++ + S+G ++R+ +A AL +++I+DEP +D +E+
Sbjct: 106 DEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRE 165
Query: 189 LLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQKTFGAQV 247
L++S + I +++S+H ++ + D + + VL G I +N++K F V
Sbjct: 166 LIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVL--GYQGKINKSENLEKLFVEVV 222
>gnl|CDD|184591 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 76.4 bits (188), Expect = 8e-15
Identities = 69/232 (29%), Positives = 110/232 (47%), Gaps = 24/232 (10%)
Query: 13 ELKDISVTYPN-GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
E++ V+Y + G L+D+++ I ++G +GAGKSTL + I LI +GSI I
Sbjct: 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVV----MMGRYKHMNWRRVASNNDYRI 127
++ DL I F V+D + M+ K+++
Sbjct: 63 DGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVD------------ 110
Query: 128 VTEALENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID-FKTE-- 183
V L VG++ R + LS G+ +RV +AR LA +V+++DEP +A+D TE
Sbjct: 111 VEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170
Query: 184 REMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLAS-GLTSDIF 234
E+I LK+ +N + ++ THN+ D T FL K +L T D F
Sbjct: 171 EELIVKLKNKMN--LTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFF 220
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 75.8 bits (186), Expect = 1e-14
Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 55/253 (21%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIM---GLIPLDKGSISIFNQTVENALKAD 83
AL+ ++L +N ITALIG +G GKST + + LIP ++I L+
Sbjct: 20 ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIP----GVTITGNVS---LRGQ 72
Query: 84 LIAYIPQTESIDW------------TFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEA 131
I Y P + + FP + + V+ G R+A D ++ EA
Sbjct: 73 NI-YAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGL-------RLAGVKDKAVLDEA 124
Query: 132 LENVGMSSMRQRQIGE------------LSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
+E +S++Q I + LS GQQ+RV +AR LA K VI++DEP +A+D
Sbjct: 125 VE----TSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180
Query: 180 FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIF---- 234
+ ++ +L L ++ +ILV TH+++ D+T FL ++ T +F
Sbjct: 181 PISSTQIENMLLELRDQYTIILV-THSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPK 239
Query: 235 ---NEDNIQKTFG 244
ED I FG
Sbjct: 240 EKETEDYITGRFG 252
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature.
Length = 363
Score = 75.7 bits (186), Expect = 1e-14
Identities = 57/206 (27%), Positives = 92/206 (44%), Gaps = 20/206 (9%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADL-- 84
+ D +L I + I ++GL+G+GKST + + LI G I I + + +L
Sbjct: 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELRE 67
Query: 85 -----IAYIPQTESIDWTFP-ILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMS 138
I + Q ++ FP + + +G E L+ VG+
Sbjct: 68 VRRKKIGMVFQQFAL---FPHMTILQNTSLG----PELLGWPEQERKEKALELLKLVGLE 120
Query: 139 SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSL---LN 195
R ELS G Q+RV LARALA + +++MDE F+A+D M LK L L
Sbjct: 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQ 180
Query: 196 EDIMILVSTHNINSIPSFCDRTIFLK 221
+ I+ + TH+++ DR + +K
Sbjct: 181 KTIVFI--THDLDEAIRIGDRIVIMK 204
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found.
Length = 213
Score = 75.3 bits (185), Expect = 2e-14
Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 10/192 (5%)
Query: 32 NLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTV-ENALKADLIAYIPQ 90
+L + + I A++G +GAGKSTL I G I GSI + +Q+ A ++ + Q
Sbjct: 18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQ 77
Query: 91 TESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELS 149
++ F L V + +G + + V +A + VG++ R +LS
Sbjct: 78 ENNL---FAHLTVRQNIGLGLHPGLKLNAEQQEK----VVDAAQQVGIADYLDRLPEQLS 130
Query: 150 IGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIMILVSTHNIN 208
GQ++RV LAR L + + ++++DEPF+A+D EM+ L+K L +E +L+ TH+++
Sbjct: 131 GGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS 190
Query: 209 SIPSFCDRTIFL 220
+ + +
Sbjct: 191 DARAIASQIAVV 202
>gnl|CDD|184583 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 75.1 bits (185), Expect = 2e-14
Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 45/257 (17%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L KD+ V Y A++ +++ +N ITALIG +G+GKST + S++
Sbjct: 21 LSTKDLHVYYGKKE-AIKGIDMQFEKNKITALIGPSGSGKSTYLR-----------SLNR 68
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVA--SNNDYRIVT 129
N T++ A I Y ID + +V M ++ M ++R + + Y +T
Sbjct: 69 MNDTIDIARVTGQILY----RGIDINRKEI--NVYEMRKHIGMVFQRPNPFAKSIYENIT 122
Query: 130 EALENVGM-----------SSMRQRQIGE------------LSIGQQKRVFLARALAQKS 166
ALE G+ +S++Q + + LS GQQ+R+ +ARA+A K
Sbjct: 123 FALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKP 182
Query: 167 QVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVL 225
+++MDEP +A+D + ++ + L +I+V THN+ D T F ++
Sbjct: 183 DILLMDEPASALDPISTMQLEETMFELKKNYTIIIV-THNMQQAARASDYTAFFYLGDLI 241
Query: 226 ASGLTSDIFNEDNIQKT 242
T +IF +Q T
Sbjct: 242 EYDKTRNIFTNPKLQST 258
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 74.8 bits (184), Expect = 3e-14
Identities = 77/273 (28%), Positives = 118/273 (43%), Gaps = 66/273 (24%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI--MG-LIPLDK-- 66
+E + +S Y + AL D++L +N +TALIG +G GKST + + M LIP +
Sbjct: 7 MEARGLSFFY-GDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVE 65
Query: 67 GSISIFNQTVENALKADLIAYIPQTESIDW------------TFPILVEDVVMMGRYKHM 114
G I + + + Y P + ++ FP + + V G
Sbjct: 66 GEILLDGENI----------YDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGL---- 111
Query: 115 NWRRVASNNDYRIVTEALENVGMSSMRQRQIGE------------LSIGQQKRVFLARAL 162
RV D + E +E S+R + + LS GQQ+R+ +ARAL
Sbjct: 112 ---RVNGVKDKAYLAERVE----RSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164
Query: 163 AQKSQVIIMDEPFAAID-FKTER--EMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIF 219
A + +V++MDEP +A+D T++ E+I LK+ I++ THN+ D T F
Sbjct: 165 AVEPEVLLMDEPASALDPIATQKIEELIHELKA----RYTIIIVTHNMQQAARVSDVTAF 220
Query: 220 LKKTVLA-SGLTSDIF-------NEDNIQKTFG 244
L G T IF ED I FG
Sbjct: 221 FYMGKLIEVGPTEQIFTRPREKQTEDYITGRFG 253
>gnl|CDD|184592 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 74.4 bits (183), Expect = 3e-14
Identities = 77/256 (30%), Positives = 123/256 (48%), Gaps = 33/256 (12%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI--MG-LI------ 62
+E +D++V Y AL+DV++ IPEN +TA+IG +G GKST + I M LI
Sbjct: 40 IEARDLNVFY-GDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVE 98
Query: 63 -PLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVAS 121
L ++++ V+ I + Q + FP + D V G + +
Sbjct: 99 GELTFRGKNVYDADVDPVALRRRIGMVFQKPN---PFPKSIYDNVAYG----LKIQGYDG 151
Query: 122 NNDYRIVTEALENVGMSSMRQRQIG----ELSIGQQKRVFLARALAQKSQVIIMDEPFAA 177
+ D R V E+L + + Q+ +LS GQQ+R+ +ARA+A +VI+MDEP +A
Sbjct: 152 DIDER-VEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASA 210
Query: 178 IDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLAS-GLTSDIFN 235
+D ++ L++ L E+ +++ THN+ D+T +FL L T IF
Sbjct: 211 LDPVATSKIEDLIEELA-EEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFE 269
Query: 236 -------EDNIQKTFG 244
ED I FG
Sbjct: 270 NPESQRVEDYITGKFG 285
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc.
Length = 708
Score = 74.4 bits (183), Expect = 3e-14
Identities = 60/224 (26%), Positives = 121/224 (54%), Gaps = 13/224 (5%)
Query: 3 TAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLI 62
T + + G + + D+S +Y G L D++L I N+ T ++G++G+GKSTL + ++G
Sbjct: 465 TELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF 524
Query: 63 PLDKGSISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRV 119
G I + ++++ + L I Y+PQ I F + + +++G ++++ +
Sbjct: 525 QARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI---FSGSILENLLLGAKENVSQDEI 581
Query: 120 ASNNDYRIVTEALENV--GMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAA 177
+ + + + +EN+ G + + +S GQ++R+ LARAL S+V+I+DE +
Sbjct: 582 WAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSN 641
Query: 178 IDFKTEREMIFLLKSLLN-EDIMILVSTHNINSIPSFCDRTIFL 220
+D TE++++ +LLN +D I+ H + S+ D+ I L
Sbjct: 642 LDTITEKKIV---NNLLNLQDKTIIFVAHRL-SVAKQSDKIIVL 681
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 74.6 bits (183), Expect = 3e-14
Identities = 76/257 (29%), Positives = 120/257 (46%), Gaps = 37/257 (14%)
Query: 8 TKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQA---------- 57
K +E K++++ Y AL D+NL I EN ITALIG +G GKST +
Sbjct: 1 MKIKMESKNLNLWYGEKQ-ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISN 59
Query: 58 --IMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMN 115
I G + LD +I +++ V+ + + Q + FP+ + D V G H
Sbjct: 60 VKIEGEVLLDGKNI--YDKDVDVVELRKRVGMVFQKPN---PFPMSIYDNVAYGPRIHGI 114
Query: 116 WRRVASNNDYRIVTEALENVGM-----SSMRQRQIGELSIGQQKRVFLARALAQKSQVII 170
+ + +IV AL+ + +++ + LS GQQ+R+ +AR +A K VI+
Sbjct: 115 KDKKELD---KIVEWALKKAALWDEVKDDLKKSALK-LSGGQQQRLCIARTIAVKPDVIL 170
Query: 171 MDEPFAAID----FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVL 225
MDEP +A+D K E M+ L K + I++ THN+ D T FL ++
Sbjct: 171 MDEPTSALDPISTLKIEDLMVELKK-----EYTIVIVTHNMQQASRVSDYTAFFLMGDLI 225
Query: 226 ASGLTSDIFNEDNIQKT 242
T IF E ++T
Sbjct: 226 EFNKTEKIFLEPQKKET 242
>gnl|CDD|183014 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 74.5 bits (184), Expect = 3e-14
Identities = 56/217 (25%), Positives = 103/217 (47%), Gaps = 37/217 (17%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E +D+ + P+G +N +P AL+G +GAGK++L A++G +P +GS+ I
Sbjct: 350 IEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY-QGSLKI 408
Query: 72 FNQTVENALKADL---IAYIPQTESIDWTFPILVE----DVVMMGRYKHMNWRRVASNND 124
+ ++++ Q P L D V++G +D
Sbjct: 409 NGIELRELDPESWRKHLSWVGQN-------PQLPHGTLRDNVLLGN---------PDASD 452
Query: 125 YRIVTEALENVGMSSMRQRQ-------IGE----LSIGQQKRVFLARALAQKSQVIIMDE 173
++ +ALEN +S IG+ LS+GQ +R+ LARAL Q Q++++DE
Sbjct: 453 EQL-QQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE 511
Query: 174 PFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSI 210
P A++D +E+ ++ L + ++V TH + +
Sbjct: 512 PTASLDAHSEQLVMQALNAASRRQTTLMV-THQLEDL 547
>gnl|CDD|183324 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 74.4 bits (184), Expect = 3e-14
Identities = 48/163 (29%), Positives = 79/163 (48%), Gaps = 48/163 (29%)
Query: 29 EDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYI 88
+D++ +P I +IG NGAGKSTLF+ I G D G+I I +TV+ +AY+
Sbjct: 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI-GETVK-------LAYV 392
Query: 89 PQT-ESID-----WTFPILVE------DVVMMGRYKHMNWRR-VASNN----DYRIVTEA 131
Q+ +++D W E D++ +G + + R V N D
Sbjct: 393 DQSRDALDPNKTVW------EEISGGLDIIKVGNRE-IPSRAYVGRFNFKGGD------- 438
Query: 132 LENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEP 174
+Q+++G LS G++ R+ LA+ L Q V+++DEP
Sbjct: 439 ---------QQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472
Score = 38.2 bits (90), Expect = 0.002
Identities = 20/47 (42%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 14 LKDISVTYPNGYCALEDVNL-FIPENTITALIGLNGAGKSTLFQAIM 59
+ +S P L+D++L F P I ++GLNGAGKSTL + IM
Sbjct: 9 MNRVSKVVPPKKQILKDISLSFFPGAKI-GVLGLNGAGKSTLLR-IM 53
Score = 28.9 bits (66), Expect = 1.3
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 145 IGELSIGQQKRVFLARALAQKSQVIIMDEP 174
+ +LS G+++RV L R L +K ++++DEP
Sbjct: 161 VTKLSGGERRRVALCRLLLEKPDMLLLDEP 190
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 74.1 bits (182), Expect = 3e-14
Identities = 53/182 (29%), Positives = 90/182 (49%), Gaps = 20/182 (10%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE+++++ ++ +G A++DV+L I + I AL+G +G GKSTL + + G G I +
Sbjct: 20 LEIRNLTKSF-DGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIML 78
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFP-------ILVEDVVMMGRYKHMNWRRVASNND 124
DL P I+ F + VE + G + ++
Sbjct: 79 DGV--------DLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFG----LKQDKLPKAEI 126
Query: 125 YRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
V E L V M +R+ +LS GQ++RV LAR+LA++ +++++DEP A+D K
Sbjct: 127 ASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRD 186
Query: 185 EM 186
M
Sbjct: 187 RM 188
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 74.3 bits (183), Expect = 3e-14
Identities = 74/274 (27%), Positives = 124/274 (45%), Gaps = 68/274 (24%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPL-D----K 66
LE++++++ Y + AL D+++ IP+N +TA IG +G GKSTL + + L D +
Sbjct: 26 LEVRNLNLFYGDKQ-ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIE 84
Query: 67 GSISIFNQTVENALKADLIAYIPQTESIDW------------TFPILVEDVVMMGRYKHM 114
G I + Q + Y + + + FP + + V+ G
Sbjct: 85 GEIRLDGQNI----------YDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGL---- 130
Query: 115 NWRRVASNNDYRIVTEALENVGMSSMRQRQIGE------------LSIGQQKRVFLARAL 162
R+ N+ R++ EA+E S+R + + LS GQQ+R+ +ARA+
Sbjct: 131 ---RLQGINNRRVLDEAVER----SLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI 183
Query: 163 AQKSQVIIMDEPFAAID----FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTI 218
A + +V+++DEP +A+D K E E+I LK I++ THN+ D T
Sbjct: 184 AIEPEVLLLDEPTSALDPISTLKIE-ELITELK----SKYTIVIVTHNMQQAARVSDYTA 238
Query: 219 FLKKTVLAS-GLTSDIF-------NEDNIQKTFG 244
F+ L G T +F ED I +G
Sbjct: 239 FMYMGKLVEYGDTDTLFTSPAKKQTEDYITGRYG 272
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase.
Length = 230
Score = 74.0 bits (182), Expect = 4e-14
Identities = 55/209 (26%), Positives = 92/209 (44%), Gaps = 37/209 (17%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAY 87
L+ VNL I + +LIG +G GKSTL I GL G + + + +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITE--------- 51
Query: 88 IPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASN---------------NDYRIVTEAL 132
P + + V+ Y + W V N IV E +
Sbjct: 52 -PGPDRM-----------VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHI 99
Query: 133 ENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKS 192
VG++ ++ G+LS G ++RV +ARAL+ + +V+++DEPF A+D T + L
Sbjct: 100 ALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQ 159
Query: 193 LLNED-IMILVSTHNINSIPSFCDRTIFL 220
+ E + +L+ TH+++ DR + L
Sbjct: 160 IWEEHRVTVLMVTHDVDEALLLSDRVVML 188
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 73.9 bits (181), Expect = 4e-14
Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 35/241 (14%)
Query: 15 KDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL---IPLDK--GSI 69
KD+ ++Y N Y AL ++L E +TALIG +G GKST + + + I K G I
Sbjct: 8 KDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI 66
Query: 70 SIFNQTVENALKADLIAYIPQTESI---DWTFPILVEDVVMMGRYKHMNWRRVASNNDYR 126
Q + + K DL+ + + FP V D V G ++A D
Sbjct: 67 KFEGQNIYGS-KMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGL-------KIAGVKDKE 118
Query: 127 IVTEALENVGMSSMRQ------------RQIGELSIGQQKRVFLARALAQKSQVIIMDEP 174
++ + +E S++Q R S GQQ+R+ +ARALA + +V+++DEP
Sbjct: 119 LIDQRVE----ESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEP 174
Query: 175 FAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDI 233
+A+D + E+ L L ++ I+V THN+ D+T FL ++ +G T ++
Sbjct: 175 TSALDPISSSEIEETLMELKHQYTFIMV-THNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
Query: 234 F 234
F
Sbjct: 234 F 234
>gnl|CDD|184201 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 73.3 bits (180), Expect = 6e-14
Identities = 55/227 (24%), Positives = 109/227 (48%), Gaps = 25/227 (11%)
Query: 12 LELKDISVTYPNGYC----ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
++ +++ Y G L++++ + E + AL+G G+GKSTL Q L+ G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 68 SI-----SIFNQTVENALKA-----DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWR 117
+I I +T LK L+ P+ + + T +++DV + N+
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENT---VLKDV----EFGPKNFG 115
Query: 118 RVASNNDYRI-VTEALENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPF 175
S ++ + + L+ VG+S + + ELS GQ +RV +A +A + +++ +DEP
Sbjct: 116 --FSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPA 173
Query: 176 AAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
A +D + +EM+ L K +++ THN++ + + D + L+
Sbjct: 174 AGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEH 220
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 73.5 bits (180), Expect = 6e-14
Identities = 73/266 (27%), Positives = 123/266 (46%), Gaps = 34/266 (12%)
Query: 4 AVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI----- 58
V+ T+ E+ ++ Y GY AL+++N+ + E +TALIG +G GKST +
Sbjct: 9 DVSPTQQKSEVNKLNFYY-GGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD 67
Query: 59 -------MGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFP-ILVEDVVMMGR 110
G I L +++I + V+ I+ + Q + FP + E+V R
Sbjct: 68 LYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPN---PFPKSIFENVAYGLR 124
Query: 111 YKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGE----LSIGQQKRVFLARALAQKS 166
+ + R + V AL N + + ++G+ LS GQQ+R+ +ARALA
Sbjct: 125 IRGVKRRSILEER----VENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDP 180
Query: 167 QVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL-KKTVL 225
++++ DEP +A+D + L+ L N+ + IL+ THN+ D T ++ ++
Sbjct: 181 EILLFDEPTSALDPIATASIEELISDLKNK-VTILIVTHNMQQAARVSDYTAYMYMGELI 239
Query: 226 ASGLTSDIF-------NEDNIQKTFG 244
G T IF ED I FG
Sbjct: 240 EFGATDTIFIKPKNKQTEDYITGRFG 265
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 73.2 bits (180), Expect = 7e-14
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 31/184 (16%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADL-IA 86
L D++L IP + AL+G +G+GK+TL + I GL G I V D +
Sbjct: 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVG 77
Query: 87 YIPQTESIDWTFPILVEDVVMMGRYKHMNW------------RRVASNNDY--RIVTEAL 132
++ Q ++ ++HM RR N VT+ L
Sbjct: 78 FVFQHYAL----------------FRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLL 121
Query: 133 ENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKS 192
E V ++ + R +LS GQ++RV LARALA + Q++++DEPF A+D + +E+ L+
Sbjct: 122 EMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQ 181
Query: 193 LLNE 196
L E
Sbjct: 182 LHEE 185
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 72.5 bits (178), Expect = 1e-13
Identities = 61/229 (26%), Positives = 113/229 (49%), Gaps = 15/229 (6%)
Query: 14 LKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFN 73
+ +IS ++P G AL++VNL + ++I AL+G NGAGKSTL + + G+ D GSI
Sbjct: 1 MSNISKSFP-GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG 59
Query: 74 QTVE-----NALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
+ ++ AL+ I+ + Q ++ V D + +GRY V + YR
Sbjct: 60 KEIDFKSSKEALENG-ISMVHQ--ELNLVLQRSVMDNMWLGRYPTKGM-FVDQDKMYRDT 115
Query: 129 TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF 188
+ + + + ++ LS+ Q + + +A+A + ++++IMDEP +++ K +
Sbjct: 116 KAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFT 175
Query: 189 LLKSLLNEDIMILVSTHNINSIPSFCDRTIFLK-----KTVLASGLTSD 232
+++ L I+ +H + I CD L+ T +GLT D
Sbjct: 176 IIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD 224
Score = 48.6 bits (116), Expect = 2e-06
Identities = 52/226 (23%), Positives = 106/226 (46%), Gaps = 31/226 (13%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
++ DV+ + + I + GL GA ++ + + + G+ G+I++ + + N
Sbjct: 263 SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNH------- 315
Query: 87 YIPQTESIDWTFPILVEDVVMMGRYKHMN--WRRVASNND-YRIVTEALENVGMSS---- 139
E+I+ F ++ E+ G Y +++ + + SN Y+ L+N M S
Sbjct: 316 --NANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQW 373
Query: 140 ----MR------QRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFL 189
MR + QIG LS G Q++V + R L + +++++DEP ID + E+ L
Sbjct: 374 VIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQL 433
Query: 190 LKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFN 235
+ L +D I++ + + + DR + V+++GL + I +
Sbjct: 434 IAELAKKDKGIIIISSEMPELLGITDRIL-----VMSNGLVAGIVD 474
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 72.3 bits (177), Expect = 1e-13
Identities = 73/243 (30%), Positives = 116/243 (47%), Gaps = 36/243 (14%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK-----GSISIFNQ------- 74
AL++V++ IP+N++TALIG +G GKST + + + L K G +SI +
Sbjct: 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDV 86
Query: 75 -TVENALKADLIAYIPQTESIDWTFPILVEDVVMMG-RYKHMNWRRVASNNDYRIVTEAL 132
VE ++ P FP+ + D V G R N + + + + + AL
Sbjct: 87 DVVELRKNVGMVFQKPNP------FPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAAL 140
Query: 133 ENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID-FKTER--EMIFL 189
+ ++ + LS GQQ+R+ +AR LA K ++I+ DEP +A+D T R ++I
Sbjct: 141 WDETSDRLKSPAL-SLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199
Query: 190 LKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFN-------EDNIQK 241
LK +D I++ THN+ D T FL ++ G T IF+ ED I
Sbjct: 200 LK----KDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKSTEDYITG 255
Query: 242 TFG 244
FG
Sbjct: 256 RFG 258
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 72.4 bits (178), Expect = 1e-13
Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 34/214 (15%)
Query: 12 LELKDISVTYPNG---YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK-- 66
LELKDI +YP+G L+ ++L I + A++G +G+GKSTL I+G LDK
Sbjct: 5 LELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMN-ILGC--LDKPT 61
Query: 67 -GSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY 125
G+ + Q V L AD +A + + E + F RY ++ A N +
Sbjct: 62 SGTYRVAGQDVA-TLDADALAQL-RREHFGFIFQ----------RYHLLSHLTAAQNVEV 109
Query: 126 RIV-------------TEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMD 172
V E L+ +G+ + Q +LS GQQ+RV +ARAL QVI+ D
Sbjct: 110 PAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILAD 169
Query: 173 EPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHN 206
EP A+D + E++ +L L + +++ TH+
Sbjct: 170 EPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
Length = 265
Score = 71.8 bits (176), Expect = 2e-13
Identities = 63/236 (26%), Positives = 108/236 (45%), Gaps = 37/236 (15%)
Query: 12 LELKDISVTYPNG--------YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP 63
LE++D++ TY G L +V+L I E L+G +G GKSTL + ++GL
Sbjct: 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62
Query: 64 LDKGSISI---------------FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMM 108
+G++S F + V+ + A P+ ++ I+ E +
Sbjct: 63 PAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRM-TVRQ---IIGEP---L 115
Query: 109 GRYKHMNWRRVASNNDYRIVTEALENVGM-SSMRQRQIGELSIGQQKRVFLARALAQKSQ 167
++ S RI E L+ VG+ S + +LS GQ +R+ +ARALA K +
Sbjct: 116 RHLTSLD----ESEQKARI-AELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPK 170
Query: 168 VIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK 222
+I++DE + +D + ++ LL+ L L TH++ + SFC R + K
Sbjct: 171 LIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDK 226
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 71.6 bits (175), Expect = 2e-13
Identities = 70/251 (27%), Positives = 122/251 (48%), Gaps = 40/251 (15%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD----- 65
+++KD+S Y N A+E +++ I N +TA+IG +G GKST + + + L+
Sbjct: 7 AIKVKDLSFYY-NTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV 65
Query: 66 KGSISIFNQTVE------NALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRV 119
+G + F Q + N L+ I + Q + FP+ + + V G R+
Sbjct: 66 EGVVDFFGQNIYDPRININRLRRQ-IGMVFQRPN---PFPMSIYENVAYGV-------RI 114
Query: 120 ASNNDY----RIVTEALENVGM-----SSMRQRQIGELSIGQQKRVFLARALAQKSQVII 170
++ IV AL+ + + + +G LS GQQ+R+ +ARALA K +V++
Sbjct: 115 SAKLPQADLDEIVESALKGAALWQEVKDKLNKSALG-LSGGQQQRLCIARALAIKPKVLL 173
Query: 171 MDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK------TV 224
MDEP +A+D ++ L+ SL +E + I + THN+ D T F +
Sbjct: 174 MDEPCSALDPIATMKVEELIHSLRSE-LTIAIVTHNMQQATRVSDFTAFFSTDESRIGQM 232
Query: 225 LASGLTSDIFN 235
+ G+T+ IF+
Sbjct: 233 VEFGVTTQIFS 243
>gnl|CDD|184581 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 71.3 bits (175), Expect = 2e-13
Identities = 79/273 (28%), Positives = 122/273 (44%), Gaps = 43/273 (15%)
Query: 1 MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQA--- 57
+T+ + +D+SV Y AL DV+L IPE T+TA IG +G GKST +
Sbjct: 9 ADKKATATEIKMRARDVSVFYGEKQ-ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNR 67
Query: 58 ---------IMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMM 108
+ G I LD I++ ++ + + Q + FP + + V
Sbjct: 68 MNDTIDGCRVTGKITLD--GEDIYDPRLDVVELRARVGMVFQKPN---PFPKSIYENVAY 122
Query: 109 GRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGE----LSIGQQKRVFLARALAQ 164
G H R A ++ IV +L G+ + ++ E LS GQQ+R+ +ARA+A
Sbjct: 123 GPRIHGLARSKAELDE--IVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAV 180
Query: 165 KSQVIIMDEPFAAID----FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIF- 219
+VI+MDEP +A+D K E E+I L ++ I++ TH++ RT F
Sbjct: 181 SPEVILMDEPCSALDPIATAKVE-ELI----DELRQNYTIVIVTHSMQQAARVSQRTAFF 235
Query: 220 -LKKTVLASGLTSDIF-------NEDNIQKTFG 244
L V G T +F +D I FG
Sbjct: 236 HLGNLV-EVGDTEKMFTNPDDPRTQDYITGRFG 267
>gnl|CDD|139715 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 71.4 bits (175), Expect = 3e-13
Identities = 62/242 (25%), Positives = 107/242 (44%), Gaps = 25/242 (10%)
Query: 22 PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALK 81
N AL +++ +N I +IG +G+GKSTL GLI G+I + + + +
Sbjct: 36 ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95
Query: 82 ADLIAYIPQTE------------SIDWTFP------ILVEDVVMMGRYKHMNWRRVASNN 123
+ P ++ S+ + FP +E +M G V +
Sbjct: 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA----LGVKKSE 151
Query: 124 DYRIVTEALENVGM-SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
++ L +G+ S +R LS GQ++RV +A LA + +++I DEP A +D K
Sbjct: 152 AKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKG 211
Query: 183 EREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIF-NEDNIQ 240
E EM+ L+ + + V TH + + D I + K +L +G +IF ++ I
Sbjct: 212 EHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIIN 271
Query: 241 KT 242
T
Sbjct: 272 ST 273
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 70.9 bits (174), Expect = 3e-13
Identities = 63/205 (30%), Positives = 105/205 (51%), Gaps = 25/205 (12%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ LK+I+ + + ++++NL I + T+ L+G +G GK+T+ + + GL +G I I
Sbjct: 7 VVLKNITKRFGSN-TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFI 65
Query: 72 FNQTV-ENALKADLIAYIPQTESIDWTFP--ILVEDV----VMMGRYKHMNWRRVASNND 124
+ V +++ I + Q+ ++ FP L E+V M+G K +RV
Sbjct: 66 DGEDVTHRSIQQRDICMVFQSYAL---FPHMSLGENVGYGLKMLGVPKEERKQRVK---- 118
Query: 125 YRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
EALE V ++ R + ++S GQQ+RV LARAL K +V++ DEP + +D R
Sbjct: 119 -----EALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRR 173
Query: 185 EM---IFLLKSLLNEDIMILVSTHN 206
M I L+ N I L TH+
Sbjct: 174 SMREKIRELQQQFN--ITSLYVTHD 196
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 71.0 bits (174), Expect = 3e-13
Identities = 66/231 (28%), Positives = 111/231 (48%), Gaps = 36/231 (15%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD-----K 66
+E ++ V Y + + ++ V+L IP+N + AL+G +G GKSTL + L+ L+ +
Sbjct: 5 IETVNLRVYYGSNH-VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVE 63
Query: 67 GSISIFNQTV--------ENALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWR 117
G + +F + + E + ++ P FP L + D V +G K
Sbjct: 64 GEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNP------FPHLTIYDNVAIG-VKLNGLV 116
Query: 118 RVASNNDYRIVTEALENVGM-SSMRQR---QIGELSIGQQKRVFLARALAQKSQVIIMDE 173
+ D R V AL+ + ++ R LS GQ++R+ +ARALA K ++++MDE
Sbjct: 117 KSKKELDER-VEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDE 175
Query: 174 PFAAID----FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
P A ID K E E++F LK ++ I++ TH+ D FL
Sbjct: 176 PTANIDPVGTAKIE-ELLFELK----KEYTIVLVTHSPAQAARVSDYVAFL 221
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 70.5 bits (173), Expect = 4e-13
Identities = 62/259 (23%), Positives = 117/259 (45%), Gaps = 36/259 (13%)
Query: 12 LELKDISVTY----PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
+++K+I + P AL++V++ I + A+IG G+GK+T + + L+ D G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 68 SISIFNQTVENALKADLIAYIPQTESIDWT--------------------------FPIL 101
+I + +N K + + I T F
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 102 VEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMS-SMRQRQIGELSIGQQKRVFLAR 160
+E ++ G V+ + + +E VG+ S QR ELS GQ++RV LA
Sbjct: 123 IEKDIIFGPVSM----GVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAG 178
Query: 161 ALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
LA + ++ DEP A +D + +E++ + +L + I++ TH+++++ + RTIF
Sbjct: 179 ILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238
Query: 221 KK-TVLASGLTSDIFNEDN 238
K ++ G T DI +++
Sbjct: 239 KDGKIIKDGDTYDILSDNK 257
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 70.2 bits (172), Expect = 6e-13
Identities = 65/234 (27%), Positives = 114/234 (48%), Gaps = 25/234 (10%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI--------------FN 73
L+ +N + ALIG +G+GKST+ + +M L P+D+G I +
Sbjct: 16 LDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLV 75
Query: 74 QTVENALKA--DLIAYIPQTESIDWTFP-ILVEDVVMMGRYKHMNWRRVASNNDYRIVTE 130
E L+ + I + Q+ ++ FP V D V + R + R + E
Sbjct: 76 PADEKHLRQMRNKIGMVFQSFNL---FPHKTVLDNVTEAPVLVLGMARAEAEK--RAM-E 129
Query: 131 ALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLL 190
L+ VG++ +LS GQQ+RV +ARALA + +V++ DE +A+D + E++ ++
Sbjct: 130 LLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVI 189
Query: 191 KSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKT 242
+ L +E D+ +L+ TH + F DR F K ++ G +IF + ++T
Sbjct: 190 RRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEERT 243
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 69.0 bits (168), Expect = 1e-12
Identities = 57/230 (24%), Positives = 109/230 (47%), Gaps = 29/230 (12%)
Query: 24 GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI------------MGLIPLDKGSISI 71
G L+ V++ P +T+L+G G+GK+T + + G + L SI
Sbjct: 33 GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFN 92
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEA 131
+ +E + ++ P FP+ + D V+ G H ++ ++R V +A
Sbjct: 93 YRDVLEFRRRVGMLFQRPNP------FPMSIMDNVLAGVRAH----KLVPRKEFRGVAQA 142
Query: 132 -LENVGMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
L VG+ + ++ + LS GQQ+ + LAR LA +V+++DEP +A+D T ++
Sbjct: 143 RLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKI 202
Query: 187 IFLLKSLLNEDIMILVSTHNINSIPSFCDR-TIFLKKTVLASGLTSDIFN 235
++SL + + +++ THN+ DR +F ++ G T +F+
Sbjct: 203 EEFIRSLADR-LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFS 251
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 69.1 bits (169), Expect = 1e-12
Identities = 77/252 (30%), Positives = 115/252 (45%), Gaps = 53/252 (21%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAI---MGLIPLDK--GSI-----SIFNQTV 76
AL+++NL I EN +TA+IG +G GKST + + + L+P K G I +IF+++
Sbjct: 39 ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98
Query: 77 ENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVG 136
+ + Q + FP + D V G H D + + E +E
Sbjct: 99 SVEELRTNVGMVFQKPN---PFPKSIYDNVTYGPKIH-------GIKDKKTLDEIVE--- 145
Query: 137 MSSMRQRQIGE------------LSIGQQKRVFLARALAQKSQVIIMDEPFAAID----F 180
S+R I + LS GQQ+R+ +AR LA + VI+MDEP +A+D
Sbjct: 146 -KSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTL 204
Query: 181 KTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IFLKKTVLASGLTSDIFN---- 235
K E E++ LK +D I++ THN+ D+T FL V T IF+
Sbjct: 205 KVE-ELVQELK----KDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPSD 259
Query: 236 ---EDNIQKTFG 244
ED I FG
Sbjct: 260 KRTEDYITGRFG 271
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 68.8 bits (168), Expect = 1e-12
Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 39/246 (15%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD-----K 66
+E++D+ V++ L+ VNL IP+NTITAL+G +G+GKSTL + LI L
Sbjct: 4 IEIRDLKVSFGQVE-VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVS 62
Query: 67 GSI-----SIFNQTV-ENALKADLIAYIPQTESIDWTFPI----LVEDVVMMGRYKHMNW 116
G + IF V E + ++ IP PI + E+V + +
Sbjct: 63 GEVYLDGQDIFKMDVIELRRRVQMVFQIPN--------PIPNLSIFENVALGLKLN---- 110
Query: 117 RRVASNND-YRIVTEALENVGM-SSMRQR---QIGELSIGQQKRVFLARALAQKSQVIIM 171
R V S + V ALE + ++ R G+LS GQQ+R+ +ARALA + +V++
Sbjct: 111 RLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLA 170
Query: 172 DEPFAAIDFK--TEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL-KKTVLASG 228
DEP A +D + + E +FL L +D+ I++ TH D FL K ++ G
Sbjct: 171 DEPTANLDPENTAKIESLFL---ELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
Query: 229 LTSDIF 234
T ++F
Sbjct: 228 PTREVF 233
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 69.1 bits (169), Expect = 1e-12
Identities = 68/226 (30%), Positives = 111/226 (49%), Gaps = 28/226 (12%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTL---FQAIMGLIPLDK-- 66
L K++++ Y + AL D+ + IP+N +TALIG +G GKSTL F + LIP +
Sbjct: 7 LSTKNLNLWYGEKH-ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRIT 65
Query: 67 GSISIFNQTVENALKADLIA---YIPQTESIDWTFPILVEDVVMMGRYKH-MNWRRVASN 122
G I +N AD++A I FP + + V G H ++
Sbjct: 66 GDIL-YNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLD- 123
Query: 123 NDYRIVTEALENVGMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAI 178
IV ++L+ + + ++ + LS GQQ+R+ +AR LA +VI+MDEP +A+
Sbjct: 124 ---TIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSAL 180
Query: 179 D----FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
D K E ++I LK ++ +++ THN+ D T F+
Sbjct: 181 DPIATAKIE-DLIEDLK----KEYTVIIVTHNMQQAARVSDYTGFM 221
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 68.9 bits (169), Expect = 1e-12
Identities = 73/263 (27%), Positives = 126/263 (47%), Gaps = 35/263 (13%)
Query: 1 MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTL---FQA 57
M + VA+ +++++++ Y + AL+++NL I +N +TA IG +G GKSTL F
Sbjct: 3 MMSMVATAPSKIQVRNLNFYY-GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNR 61
Query: 58 IMGLIPLDK--GSISIFNQTVENALKADL--------IAYIPQTESIDWTFPILVEDVVM 107
+ L P + G I + EN L + + Q + FP+ + D +
Sbjct: 62 MYELYPEQRAEGEILLDG---ENILTPKQDIALLRAKVGMVFQKPT---PFPMSIYDNIA 115
Query: 108 MGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGE----LSIGQQKRVFLARALA 163
G R + D R V AL + + + ++ + LS GQQ+R+ +AR +A
Sbjct: 116 FGVRLFEKLSR--AEMDER-VEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIA 172
Query: 164 QKSQVIIMDEPFAAID-FKTER--EMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
+ +V+++DEP +A+D T R E+I LK +D +++ THN+ D T F+
Sbjct: 173 IRPEVLLLDEPCSALDPISTGRIEELITELK----QDYTVVIVTHNMQQAARCSDYTAFM 228
Query: 221 KKTVLAS-GLTSDIFNEDNIQKT 242
L G T IF + ++T
Sbjct: 229 YLGELIEFGNTDTIFTKPAKKQT 251
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 68.1 bits (166), Expect = 3e-12
Identities = 66/228 (28%), Positives = 110/228 (48%), Gaps = 20/228 (8%)
Query: 21 YPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTV---E 77
Y N L+D+ + IP N+I ++G +G+GKSTL + + LI + I + + + +
Sbjct: 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGK 78
Query: 78 NALKADLIAYIPQTESIDWT---FPIL-VEDVVMMGRYKH--MNWRRVASNNDYRIVTEA 131
+ + D I + + FP L + D + H R + +IV E
Sbjct: 79 DIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK-----KIVEEC 133
Query: 132 LENVGMSSMRQRQI----GELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
L VG+ ++ +LS GQQ+R+ +ARALA K +V++MDEP + ID + +
Sbjct: 134 LRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIE 193
Query: 188 FLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLAS-GLTSDIF 234
L+ L NE +++VS HN + D FL L G +++IF
Sbjct: 194 KLITELKNEIAIVIVS-HNPQQVARVADYVAFLYNGELVEWGSSNEIF 240
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 67.7 bits (165), Expect = 3e-12
Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 37/237 (15%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
AL D+N+ I +N ITALIG +G GKST + FN+ + K D +
Sbjct: 17 ALFDINMQIEQNKITALIGASGCGKSTFLRC--------------FNRMNDKIAKIDGLV 62
Query: 87 YIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYR---------------IVTEA 131
I + + L ++V M+ + ++ + + N Y +V +
Sbjct: 63 EIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDC 122
Query: 132 LENVGM-----SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
L+ VG+ ++Q + LS GQQ+R+ +ARALA K +++++DEP +A+D + +
Sbjct: 123 LQKVGLFEEVKDKLKQNALA-LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI 181
Query: 187 IFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLAS-GLTSDIFNEDNIQKT 242
LLK L + MI+V THN+ D T F L G + + F +KT
Sbjct: 182 EELLKELSHNLSMIMV-THNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEKT 237
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 67.9 bits (166), Expect = 3e-12
Identities = 64/235 (27%), Positives = 110/235 (46%), Gaps = 22/235 (9%)
Query: 15 KDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTL---FQAIMGLIP-------L 64
K++++ Y L D+NL I + +TA IG +G GKST F + +P L
Sbjct: 9 KNLNLWY-GSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL 67
Query: 65 DKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124
D I +++ L + + Q + FP + D V G H + ++
Sbjct: 68 DIDGIDVYSVDTNVVLLRAKVGMVFQKPN---PFPKSIYDNVAYGPKLHGLAKNKKKLDE 124
Query: 125 YRIVTEALENVGM----SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDF 180
IV ++L +VG+ + ELS GQQ+R+ +ARA+A K +++MDEP +A+D
Sbjct: 125 --IVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDP 182
Query: 181 KTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIF 234
+ L++ L ++ I+V TH++ DR F + ++ T +IF
Sbjct: 183 VATNVIENLIQE-LKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIF 236
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 67.6 bits (165), Expect = 3e-12
Identities = 71/236 (30%), Positives = 121/236 (51%), Gaps = 21/236 (8%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL---IPLDK-- 66
+E+++ S Y A+++V + I +N ITA+IG +G GK+TL ++I + IP +
Sbjct: 4 IEIENFSAYYGEKK-AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62
Query: 67 GSISIFNQTVENALKADLIAYIPQTESI---DWTFPILVEDVVMMGRYKHMNWRRVASNN 123
G I Q + + + D+ Y + + FP+ + D V G H + +
Sbjct: 63 GKIYFKGQDIYDP-QLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD- 120
Query: 124 DYRIVTEALENVGMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
RIV E+L+ + + ++ + LS GQQ+R+ +ARALA + +VI++DEP +A+D
Sbjct: 121 --RIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178
Query: 180 -FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLAS-GLTSDI 233
T+R I L L+E+ I++ THNI D F+ + L G T +I
Sbjct: 179 PIATQR--IEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232
>gnl|CDD|182444 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 67.4 bits (165), Expect = 4e-12
Identities = 55/214 (25%), Positives = 102/214 (47%), Gaps = 37/214 (17%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI---------------F 72
L +V+L + AL+G +G GKSTL + ++GL +G++S F
Sbjct: 28 LNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAF 87
Query: 73 NQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHM----NWRRVASNNDYRIV 128
+ ++ + + A P+ +++ I+ E + +H+ R+A
Sbjct: 88 RRDIQMVFQDSISAVNPR-KTVRE---IIREPL------RHLLSLDKAERLAR------A 131
Query: 129 TEALENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
+E L V + S+ ++ +LS GQ +RV LARALA + +++I+DE + +D + +I
Sbjct: 132 SEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVI 191
Query: 188 FLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFL 220
LLK L + L TH++ + FC R + +
Sbjct: 192 RLLKKLQQQFGTACLFITHDLRLVERFCQRVMVM 225
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes.
Length = 571
Score = 67.0 bits (164), Expect = 5e-12
Identities = 54/211 (25%), Positives = 95/211 (45%), Gaps = 16/211 (7%)
Query: 9 KGGLELKDISVTYP-NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
+G +E ++++ YP AL+ ++L I AL+G +G+GKSTL I D G
Sbjct: 328 RGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSG 387
Query: 68 SISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI 127
I + + + A L + F + + + GR A +
Sbjct: 388 QILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGR------TEQADRAEIER 441
Query: 128 VTE---ALENV-GMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
A + V + IGE LS GQ++R+ +ARAL + + ++I+DE +A+D
Sbjct: 442 ALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501
Query: 180 FKTEREMIFLLKSLLNEDIMILVSTHNINSI 210
++ER + L+ L+ LV H +++I
Sbjct: 502 NESERLVQAALERLMQGRTT-LVIAHRLSTI 531
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 66.7 bits (163), Expect = 7e-12
Identities = 71/262 (27%), Positives = 127/262 (48%), Gaps = 37/262 (14%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL---IP--LDK 66
+++KD+++ Y + + A+EDVNL I ++TA IG +G GKST+ + + + IP +
Sbjct: 5 IDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVE 63
Query: 67 GSI-----SIFNQTVENALKADLIAYIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVA 120
G + ++ V+ I + Q + FP + + D V+ G +N R
Sbjct: 64 GEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN---PFPTMSIRDNVVAGL--KLNGVRNK 118
Query: 121 SNNDYRIVTEALENVGMSSMRQRQIGELSIG----QQKRVFLARALAQKSQVIIMDEPFA 176
+ D +V ++L + + + ++ + G QQ+R+ +ARA+A + V++MDEP +
Sbjct: 119 KDLD-ELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCS 177
Query: 177 AIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIF--LKKT-----VLASGL 229
A+D I L + L +D I++ THN+ D+T F L+ T ++
Sbjct: 178 ALD-PISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDD 236
Query: 230 TSDIFN-------EDNIQKTFG 244
T IF+ ED I FG
Sbjct: 237 TEKIFSNPTQKATEDYISGRFG 258
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 66.4 bits (162), Expect = 7e-12
Identities = 49/193 (25%), Positives = 89/193 (46%), Gaps = 31/193 (16%)
Query: 42 ALI--GLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFP 99
AL+ G NGAGK+TL + + GL+ ++ G I I +T ++ +AY+ P
Sbjct: 39 ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH-------LP 91
Query: 100 ILVEDVVMMGRYKHMNW------RRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQ 153
L D+ + + +++ + AL VG++ + +LS GQ+
Sbjct: 92 GLKADLSTLENLHFLCGLHGRRAKQMPGS--------ALAIVGLAGYEDTLVRQLSAGQK 143
Query: 154 KRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIM----ILVSTHNINS 209
KR+ LAR + + ++DEP+A +D E I L+ +++ + LV+TH +
Sbjct: 144 KRLALARLWLSPAPLWLLDEPYANLDL----EGITLVNRMISAHLRGGGAALVTTHGAYA 199
Query: 210 IPSFCDRTIFLKK 222
P R + L+
Sbjct: 200 APPVRTRMLTLEA 212
>gnl|CDD|178771 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 66.2 bits (161), Expect = 1e-11
Identities = 53/191 (27%), Positives = 88/191 (46%), Gaps = 38/191 (19%)
Query: 7 STKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
S K G D + P L D+NL IP ++ A++G G GK++L A++G + +
Sbjct: 616 SIKNGYFSWDSKTSKPT----LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAE 671
Query: 67 GSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMG------RYKHMNWRRVA 120
S + +V AY+PQ + W F V + ++ G RY WR +
Sbjct: 672 TSSVVIRGSV---------AYVPQ---VSWIFNATVRENILFGSDFESERY----WRAID 715
Query: 121 SNNDYRIVTEALENVGMSSMRQR-QIGE----LSIGQQKRVFLARALAQKSQVIIMDEPF 175
VT ++ + R +IGE +S GQ++RV +ARA+ S + I D+P
Sbjct: 716 -------VTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPL 768
Query: 176 AAIDFKTEREM 186
+A+D ++
Sbjct: 769 SALDAHVAHQV 779
Score = 62.3 bits (151), Expect = 1e-10
Identities = 63/239 (26%), Positives = 119/239 (49%), Gaps = 42/239 (17%)
Query: 8 TKGGLELKDISVTY-PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
++G ++ +D+ + Y P L ++ F+ + ++G GAGKS++ A+ ++ L+K
Sbjct: 1231 SRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEK 1290
Query: 67 GSISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNN 123
G I I + V DL ++ IPQ+ P+L V N + +N
Sbjct: 1291 GRIMIDDCDVAKFGLTDLRRVLSIIPQS-------PVLFSGTV------RFNIDPFSEHN 1337
Query: 124 DYRIVTEALENVGMSSMRQR-------QIGE----LSIGQQKRVFLARALAQKSQVIIMD 172
D + EALE + + R ++ E S+GQ++ + LARAL ++S+++++D
Sbjct: 1338 DADL-WEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLD 1396
Query: 173 EPFAAIDFKTEREMIFLLKSLLNEDI---MILVSTHNINSIPSFCDRTIFLKKTVLASG 228
E A++D +T+ L++ + E+ +LV H +N+I CD+ + VL+SG
Sbjct: 1397 EATASVDVRTDS----LIQRTIREEFKSCTMLVIAHRLNTIID-CDKIL-----VLSSG 1445
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 65.9 bits (160), Expect = 1e-11
Identities = 72/253 (28%), Positives = 111/253 (43%), Gaps = 57/253 (22%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAI------------MGLIPLDKGSISIFNQT 75
L+++N+ PE ITA+IG +G GKSTL +A+ G + LD +I N
Sbjct: 20 LKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLD 79
Query: 76 VENALKA----------------DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRV 119
V N K D +A+ P+ T +++VV + W V
Sbjct: 80 VVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGT--TAQSRLDEVVEKSLRQAALWDEV 137
Query: 120 ASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
N L G++ LS GQQ+R+ +AR LA + +VI+MDEP +A+D
Sbjct: 138 KDN---------LHKSGLA---------LSGGQQQRLCIARVLAIEPEVILMDEPCSALD 179
Query: 180 FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIF-LKKTVLASGLTSDIFN--- 235
+ + L++ L ++ I + THN+ D T F L ++ G T +IF+
Sbjct: 180 PVSTMRIEELMQE-LKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPR 238
Query: 236 ----EDNIQKTFG 244
ED I FG
Sbjct: 239 DKRTEDYITGRFG 251
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 65.8 bits (160), Expect = 1e-11
Identities = 66/254 (25%), Positives = 119/254 (46%), Gaps = 20/254 (7%)
Query: 10 GGLELKDISVTY----PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD 65
+ L ++S TY P + AL + +L +N +T +IG G+GKST+ Q GLI +
Sbjct: 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISE 64
Query: 66 KGSISIFNQTVENALKA-DLIAYIPQTESIDWTFP--ILVEDVVMMGRYKHMNWRRVASN 122
G + + + LK + + + + + FP L ++ + K + + V
Sbjct: 65 TGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIE----KDIAFGPVNLG 120
Query: 123 ND----YRIVTEALENVGM-SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAA 177
+ Y+ V E L+ V + +R ELS GQ++RV LA +A +++DEP
Sbjct: 121 ENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGG 180
Query: 178 IDFKTEREMIFLLKSL-LNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFN 235
+D K E + I L + L I++ THN++ + D I + + V++ G +IF+
Sbjct: 181 LDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFS 240
Query: 236 EDNIQKTFGAQVSP 249
N + ++ P
Sbjct: 241 --NQELLTKIEIDP 252
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 65.4 bits (159), Expect = 1e-11
Identities = 62/224 (27%), Positives = 110/224 (49%), Gaps = 24/224 (10%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKST---LFQAIMGLIPLDK-- 66
++ +D++ Y + + AL+ +++ I E ++ A IG +G GKST LF + LIP +
Sbjct: 4 IDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLE 62
Query: 67 GSI-----SIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVAS 121
G I +I+++ V+ + + Q + FP + + V G + V
Sbjct: 63 GEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN---PFPKSIFENVAYG----LRVNGVKD 115
Query: 122 NNDYR-IVTEALENVGMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFA 176
N R V E L+ + + ++ E LS GQQ+R+ +ARA+A V++MDEP +
Sbjct: 116 NAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175
Query: 177 AIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
A+D + ++ L+ L D I++ THN+ D+T F
Sbjct: 176 ALDPISTAKVEELIHELKK-DYTIVIVTHNMQQAARVSDKTAFF 218
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 65.4 bits (160), Expect = 1e-11
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 38/194 (19%)
Query: 42 ALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQT---------------VENALKADLIA 86
A++G +GAGKSTL I G + GS+++ Q EN L
Sbjct: 29 AILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNL------ 82
Query: 87 YIPQTESIDWTFPIL-VEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQI 145
F L V + +G + + A+ + +G+ + R
Sbjct: 83 -----------FSHLTVAQNIGLGL--NPGLKLNAAQR--EKLHAIARQMGIEDLLARLP 127
Query: 146 GELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIMILVST 204
G+LS GQ++RV LAR L ++ ++++DEPF+A+D +EM+ L+ + E + +L+ +
Sbjct: 128 GQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVS 187
Query: 205 HNINSIPSFCDRTI 218
H++ R++
Sbjct: 188 HSLEDAARIAPRSL 201
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 65.4 bits (160), Expect = 1e-11
Identities = 66/253 (26%), Positives = 126/253 (49%), Gaps = 28/253 (11%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L + + + + G A+ +VNL + E I +LIG NGAGK+T+F + G G+I +
Sbjct: 6 LSVSGLMMRF-GGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFP--------ILVEDVVMMGRYKHMNWRRVA--- 120
Q +E L IA + TF ++E++ ++ +++ + +
Sbjct: 65 RGQHIE-GLPGHQIA----RMGVVRTFQHVRLFREMTVIENL-LVAQHQQLKTGLFSGLL 118
Query: 121 SNNDYRIV-TEALEN-------VGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMD 172
+R +EAL+ VG+ RQ G L+ GQQ+R+ +AR + + +++++D
Sbjct: 119 KTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178
Query: 173 EPFAAIDFKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLT 230
EP A ++ K +E+ L+ L NE ++ +L+ H++ + DR + + T LA+G
Sbjct: 179 EPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238
Query: 231 SDIFNEDNIQKTF 243
+I N ++ K +
Sbjct: 239 EEIRNNPDVIKAY 251
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 65.4 bits (159), Expect = 2e-11
Identities = 60/237 (25%), Positives = 112/237 (47%), Gaps = 17/237 (7%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ L+++S +YP+G ALE++NL I + +IG NG+GKSTL + GL+ KG + +
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 72 -------FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124
F++ ++ P+T+ + T VE+ + G +
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRT----VEEDLAFGPENLC----LPPIEI 113
Query: 125 YRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
+ V AL +G+ R R LS GQ + V LA L + + +I DE + +D +
Sbjct: 114 RKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173
Query: 185 EMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQ 240
++ +K L + I+ THN+ + DR I + + ++ G ++ ++ ++Q
Sbjct: 174 AVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLEGEPENVLSDVSLQ 229
>gnl|CDD|183331 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 65.2 bits (159), Expect = 2e-11
Identities = 64/252 (25%), Positives = 106/252 (42%), Gaps = 68/252 (26%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSI-- 69
++++ +S T N C ++++L +P ITA++G +G GK+TL + I G I D G I
Sbjct: 8 VDMRGVSFTRGN-RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILF 66
Query: 70 --------------------SIFNQTVENALKADLIAYIPQTESIDWTF-------PILV 102
S+ Q+ AL D+ + +++ + L+
Sbjct: 67 DGENIPAMSRSRLYTVRKRMSMLFQS--GALFTDMNVF----DNVAYPLREHTQLPAPLL 120
Query: 103 EDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARAL 162
VMM LE VG+ + ELS G +R LARA+
Sbjct: 121 HSTVMM----------------------KLEAVGLRGAAKLMPSELSGGMARRAALARAI 158
Query: 163 AQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-----DIMILVSTHNINSIPSFCDRT 217
A + +I+ DEPF D T M L+K L++E + +V +H++ + S D
Sbjct: 159 ALEPDLIMFDEPFVGQDPIT---MGVLVK-LISELNSALGVTCVVVSHDVPEVLSIADHA 214
Query: 218 -IFLKKTVLASG 228
I K ++A G
Sbjct: 215 YIVADKKIVAHG 226
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 64.6 bits (158), Expect = 3e-11
Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 45/247 (18%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD--KGSI 69
LE+K+I+ T+ G AL++V+L + I +L G NGAGKSTL + + G+ P +G I
Sbjct: 6 LEMKNITKTFG-GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI 64
Query: 70 SIFNQTVENALKADL----IAYIPQTESIDWTFPILVEDV-----VMMG----RYKHMNW 116
+ ++ + D IA I Q + LV+++ + +G M++
Sbjct: 65 IFEGEELQASNIRDTERAGIAIIHQELA-------LVKELSVLENIFLGNEITPGGIMDY 117
Query: 117 RRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFA 176
+ Y + L + + +G L +GQQ+ V +A+AL ++++++I+DEP A
Sbjct: 118 DAM-----YLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTA 172
Query: 177 AIDFKTEREMIFLL---KSLLNEDIMILVSTHNINSIPSFCD--------RTIFLKKTVL 225
++ TE E LL + L I + +H +N + + D R I T
Sbjct: 173 SL---TESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI---GTRP 226
Query: 226 ASGLTSD 232
A+G+T D
Sbjct: 227 AAGMTED 233
Score = 49.2 bits (118), Expect = 1e-06
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 20/187 (10%)
Query: 30 DVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP-LDKGSISIFNQTV-----ENALKAD 83
DV+ + I + GL GAG++ L Q + G P +G I I + V + A+
Sbjct: 280 DVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQG 339
Query: 84 LIAYIPQTESIDWTFPILVEDV------VMMGRYKHMNWRRVASNNDYRIVTEALEN--V 135
IA +P+ D P++ V + R+ R+ + + + E+++ V
Sbjct: 340 -IAMVPEDRKRDGIVPVM--GVGKNITLAALDRFTG--GSRIDDAAELKTILESIQRLKV 394
Query: 136 GMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLN 195
+S I LS G Q++ LA+ L +++I+DEP ID + E+ L+ L+
Sbjct: 395 KTASPELA-IARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ 453
Query: 196 EDIMILV 202
+ + I+V
Sbjct: 454 QGVAIIV 460
>gnl|CDD|185088 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 64.3 bits (157), Expect = 3e-11
Identities = 57/209 (27%), Positives = 103/209 (49%), Gaps = 26/209 (12%)
Query: 43 LIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTF---- 98
L+G +G+GKST A++ LI +G I Q + N + L+ + I F
Sbjct: 317 LVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHR---IQVVFQDPN 372
Query: 99 ----PIL-VEDVVMMG---RYKHMNWRRVASNNDYRIVTEALENVGMS-SMRQRQIGELS 149
P L V ++ G ++ A+ + + V +E VG+ R R E S
Sbjct: 373 SSLNPRLNVLQIIEEGLRVHQPTLS----AAQREQQ-VIAVMEEVGLDPETRHRYPAEFS 427
Query: 150 IGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIM--ILVSTHNI 207
GQ++R+ +ARAL K +II+DEP +++D + +++ LLKSL + + + +S H++
Sbjct: 428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFIS-HDL 486
Query: 208 NSIPSFCDRTIFLKK-TVLASGLTSDIFN 235
+ + + C + I L++ V+ G +F
Sbjct: 487 HVVRALCHQVIVLRQGEVVEQGDCERVFA 515
Score = 58.9 bits (143), Expect = 1e-09
Identities = 61/230 (26%), Positives = 110/230 (47%), Gaps = 34/230 (14%)
Query: 12 LELKDISVTYPNG---YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP----- 63
L ++++SV + + DV+L I AL+G +G+GKS +I+ L+P
Sbjct: 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVV 65
Query: 64 LDKGSISIFNQTVENA-------LKADLIAYIPQTESIDWTFPI------LVEDVVMMGR 110
G I +++ +A ++ + IA I Q E + P+ L E + +
Sbjct: 66 YPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQ-EPMVSLNPLHTLEKQLYEVLSL--- 121
Query: 111 YKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIG---ELSIGQQKRVFLARALAQKSQ 167
H RR A+ + + L+ VG+ +R +LS G+++RV +A AL + +
Sbjct: 122 --HRGMRREAARGE---ILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPE 176
Query: 168 VIIMDEPFAAIDFKTEREMIFLLKSLLNEDIM-ILVSTHNINSIPSFCDR 216
++I DEP A+D + +++ LL+ L E M +L THN++ + DR
Sbjct: 177 LLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADR 226
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005).
Length = 500
Score = 64.1 bits (156), Expect = 4e-11
Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 16/214 (7%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE+K I T+ G AL+ ++L + L G NGAGKSTL + + G+ P I
Sbjct: 2 LEMKGIVKTF-GGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI 60
Query: 72 FNQTVENALKADLIAYIPQTE----SIDWTFPILVEDV-----VMMGRYKHMNWRRVASN 122
+ + LKA + I TE I LV ++ + +G + R+A N
Sbjct: 61 YWS--GSPLKA---SNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYN 115
Query: 123 NDYRIVTEALENVGMSSMR-QRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
Y L + + + R +G+ GQQ+ V +A+AL ++++++I+DEP +++ K
Sbjct: 116 AMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEK 175
Query: 182 TEREMIFLLKSLLNEDIMILVSTHNINSIPSFCD 215
++ +++ L + + +H +N + + CD
Sbjct: 176 ETEILLDIIRDLKAHGVACVYISHKLNEVKAVCD 209
Score = 53.7 bits (129), Expect = 5e-08
Identities = 49/226 (21%), Positives = 102/226 (45%), Gaps = 14/226 (6%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP--------LDKGSISIFNQTVENA 79
++DV+ + I + GL GAG++ L QA+ G P ++ + I + A
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDI--RNPAQA 333
Query: 80 LKADLIAYIPQTESIDWTFPILV--EDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGM 137
++A IA +P+ PIL +++ + R+ + + +I+ A++ + +
Sbjct: 334 IRAG-IAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV 392
Query: 138 -SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE 196
++ IG LS G Q++ LA+ L +V+I+DEP +D + E+ L+ L E
Sbjct: 393 KTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452
Query: 197 DIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSDIFNEDNIQKT 242
+ I+V + + + DR + + + L + ++ +
Sbjct: 453 GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHALTQEQVLAA 498
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina.
Length = 221
Score = 63.9 bits (156), Expect = 4e-11
Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 21/209 (10%)
Query: 12 LELKDISVTYPNG---YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL------- 61
L+ +++ Y G L+ V+L I + I A++G +G+GKSTL + GL
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 62 IPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVAS 121
+ + S+S + L+ + +I Q + F L E+V M + +
Sbjct: 62 VLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTAL-ENVAMPLLIGKKSVKEAK- 119
Query: 122 NNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
E LE VG+ + ELS G+++RV +ARAL + +++ DEP +D
Sbjct: 120 ----ERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNN 175
Query: 182 TER---EMIFLLKSLLNEDIMILVSTHNI 207
+ +++ L LN LV TH++
Sbjct: 176 NAKIIFDLMLELNRELN--TSFLVVTHDL 202
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 63.6 bits (155), Expect = 5e-11
Identities = 57/230 (24%), Positives = 102/230 (44%), Gaps = 48/230 (20%)
Query: 23 NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENAL-- 80
+G L ++L + + A+IG +G+GK+TL + I L + G+I + + T++ A
Sbjct: 14 HGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSL 73
Query: 81 --KADLIAYIPQTESIDWTF------------------PILV-----EDVVMMGRYKHMN 115
+ LI + Q + + F P++V E+ R
Sbjct: 74 SQQKGLIRQLRQ--HVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARAR----- 126
Query: 116 WRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPF 175
E L VG++ LS GQQ+RV +ARALA + +VI+ DEP
Sbjct: 127 --------------ELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPT 172
Query: 176 AAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVL 225
+A+D + E++ ++ L E +++ TH ++ DR IF+ + +
Sbjct: 173 SALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222
>gnl|CDD|184193 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 63.2 bits (154), Expect = 7e-11
Identities = 69/237 (29%), Positives = 111/237 (46%), Gaps = 27/237 (11%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI--FNQTVENAL---- 80
AL+DVNL + + ++G NG+GKST+ + + L+ +G + + + + E L
Sbjct: 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIR 84
Query: 81 -KADLIAYIPQTESIDWTFPILVEDVVM----MGRYKHMNWRRVASNNDYRIVTEALENV 135
KA ++ P + + I+ EDV +G + V E+L+ V
Sbjct: 85 NKAGMVFQNPDNQIVA---TIVEEDVAFGPENLG---------IPPEEIRERVDESLKKV 132
Query: 136 GMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLN 195
GM R+ LS GQ++RV +A LA + + II DEP A +D RE++ +K L
Sbjct: 133 GMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNK 192
Query: 196 ED-IMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTFGAQVSPQ 250
+ I I++ TH + DR I + V+ G +IF E + K G V PQ
Sbjct: 193 KYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFKEVEMMKKIGLDV-PQ 247
>gnl|CDD|178676 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 63.2 bits (154), Expect = 7e-11
Identities = 48/171 (28%), Positives = 80/171 (46%), Gaps = 38/171 (22%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAY 87
L ++NL +P ++ A++G G GK++L A++G +P + + TV AY
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTV---------AY 683
Query: 88 IPQTESIDWTFPILVEDVVMMG------RYKHMNWRRV---ASNNDYRIVTEALENVGMS 138
+PQ + W F V D ++ G RY R + A +D + +
Sbjct: 684 VPQ---VSWIFNATVRDNILFGSPFDPERY----ERAIDVTALQHDLDL---------LP 727
Query: 139 SMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTERE 185
+IGE +S GQ++RV +ARA+ S V I D+P +A+D R+
Sbjct: 728 GGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQ 778
Score = 60.9 bits (148), Expect = 4e-10
Identities = 60/229 (26%), Positives = 111/229 (48%), Gaps = 37/229 (16%)
Query: 10 GGLELKDISVTY-PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
G ++ +D+ + Y P L ++ I + ++G GAGKS++ A+ ++ L++G
Sbjct: 1236 GSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGR 1295
Query: 69 ISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY 125
I I + DL + IPQ P+L V R+ N +ND
Sbjct: 1296 ILIDGCDISKFGLMDLRKVLGIIPQA-------PVLFSGTV---RF---NLDPFNEHNDA 1342
Query: 126 RIVTEALENVGMSSMRQR----------QIGE-LSIGQQKRVFLARALAQKSQVIIMDEP 174
+ E+LE + + +R + GE S+GQ++ + LARAL ++S+++++DE
Sbjct: 1343 DL-WESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEA 1401
Query: 175 FAAIDFKTEREMIFLLKSLLNEDI---MILVSTHNINSIPSFCDRTIFL 220
AA+D +T+ L++ + E+ +L+ H +N+I CDR + L
Sbjct: 1402 TAAVDVRTDA----LIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVL 1445
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 62.9 bits (153), Expect = 9e-11
Identities = 61/204 (29%), Positives = 97/204 (47%), Gaps = 21/204 (10%)
Query: 28 LEDVNLFI-PENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVEN-------A 79
L V L + TI ALIG +G+GKSTL + GL G +S+ Q +
Sbjct: 26 LTGVELVVKRGETI-ALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 80 LKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSS 139
L+A + ++ Q+ + T L E+V + + + R+ + LE +G+
Sbjct: 85 LRAKHVGFVFQSFMLIPTLNAL-ENVELPALLRGESSRQSRNG-----AKALLEQLGLGK 138
Query: 140 MRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNED-- 197
+LS G+Q+RV LARA + V+ DEP +D +T ++ LL S LN +
Sbjct: 139 RLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS-LNREHG 197
Query: 198 -IMILVSTHNINSIPSFCDRTIFL 220
+ILV TH+ + + CDR + L
Sbjct: 198 TTLILV-THD-LQLAARCDRRLRL 219
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 62.7 bits (152), Expect = 1e-10
Identities = 54/219 (24%), Positives = 97/219 (44%), Gaps = 30/219 (13%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAY 87
L+ V+L + ++IG +G+GKST + I L +GSI + QT+ D
Sbjct: 21 LKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80
Query: 88 IPQTESID---------------WTFPILVEDVV-----MMGRYKHMNWRRVASNNDYRI 127
+ + W+ ++E+V+ ++G K R
Sbjct: 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA-------- 132
Query: 128 VTEALENVGMS-SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREM 186
+ L VG+ + + LS GQQ+RV +ARALA + +V++ DEP +A+D + E+
Sbjct: 133 -VKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEV 191
Query: 187 IFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVL 225
+ +++ L E ++V TH + IFL + +
Sbjct: 192 LRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 62.4 bits (151), Expect = 1e-10
Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 15/218 (6%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADL-- 84
++D +L I E I ++GL+G+GKST+ + + LI +G + I + A+L
Sbjct: 43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRE 102
Query: 85 -----IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSS 139
IA + Q+ F ++ V+ M + + +AL VG+ +
Sbjct: 103 VRRKKIAMVFQS------FALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLEN 156
Query: 140 MRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI-FLLKSLLNEDI 198
ELS G ++RV LARALA +++MDE F+A+D EM L+K
Sbjct: 157 YAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQR 216
Query: 199 MILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFN 235
I+ +H+++ DR ++ V+ G +I N
Sbjct: 217 TIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILN 254
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 62.0 bits (151), Expect = 2e-10
Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 54/237 (22%)
Query: 2 KTAVASTKGGLELKDISVTYPNG-YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG 60
K + KG +E ++++ TYP AL ++N IP AL+G +G+GKST+ +
Sbjct: 332 KRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTR 391
Query: 61 LIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVA 120
+D+G I + + D+T L V ++ + H+ +A
Sbjct: 392 FYDIDEGEILLDGHDLR-----------------DYTLASLRNQVALVSQNVHLFNDTIA 434
Query: 121 SNNDY---------RIVTEA-----------LENVGMSSMRQRQIGE----LSIGQQKRV 156
+N Y +I A ++N G+ ++ IGE LS GQ++R+
Sbjct: 435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDN-GLDTV----IGENGVLLSGGQRQRI 489
Query: 157 FLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE---DIMILVSTHNINSI 210
+ARAL + S ++I+DE +A+D ++ER +++ L+E + LV H +++I
Sbjct: 490 AIARALLRDSPILILDEATSALDTESERA----IQAALDELQKNRTSLVIAHRLSTI 542
>gnl|CDD|140270 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 62.1 bits (151), Expect = 2e-10
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 23/157 (14%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAY 87
L DV++ +P +T ++G G+GKSTL Q+++ + +G + IAY
Sbjct: 676 LRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV----------WAERSIAY 725
Query: 88 IPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVG-MSSMRQRQIG 146
+PQ W V ++ + A D V++ ++ + + +IG
Sbjct: 726 VPQQA---WIMNATVRGNILF-----FDEEDAARLADAVRVSQLEADLAQLGGGLETEIG 777
Query: 147 E----LSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
E LS GQ+ RV LARA+ V ++D+P +A+D
Sbjct: 778 EKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
Score = 38.2 bits (89), Expect = 0.002
Identities = 53/210 (25%), Positives = 82/210 (39%), Gaps = 64/210 (30%)
Query: 10 GGLELKDISVTYPNGY-CALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
G L + + + Y G L V+ I ++G G+GKSTL M ++ + G
Sbjct: 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGE 1366
Query: 69 ISIFNQTVENALKADLIAY-----------IPQTESIDWTFPILVEDVVMMGRYKHMNWR 117
I + + ++ AY IPQ P+L + V
Sbjct: 1367 IRVNGR--------EIGAYGLRELRRQFSMIPQD-------PVLFDGTV----------- 1400
Query: 118 RVASNNDYRI------VTEALENVGMSSMRQRQIGE--------------LSIGQQKRVF 157
N D + V ALE VG+ R+R E S+GQ++ +
Sbjct: 1401 --RQNVDPFLEASSAEVWAALELVGL---RERVASESEGIDSRVLEGGSNYSVGQRQLMC 1455
Query: 158 LARALAQK-SQVIIMDEPFAAIDFKTEREM 186
+ARAL +K S I+MDE A ID +R++
Sbjct: 1456 MARALLKKGSGFILMDEATANIDPALDRQI 1485
>gnl|CDD|130031 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved.
Length = 1522
Score = 61.9 bits (150), Expect = 2e-10
Identities = 62/236 (26%), Positives = 103/236 (43%), Gaps = 37/236 (15%)
Query: 9 KGGLELKDISVTYPNGY-CALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
+G +E ++ + Y L +N+ I ++G GAGKS+L + + +G
Sbjct: 1282 RGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEG 1341
Query: 68 SISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124
I I + DL I IPQ D V+ MN + +D
Sbjct: 1342 EIIIDGLNIAKIGLHDLRFKITIIPQ-------------DPVLFSGSLRMNLDPFSQYSD 1388
Query: 125 YRIVTEALENVGMSSMRQRQI----------GE-LSIGQQKRVFLARALAQKSQVIIMDE 173
+ ALE + + GE LS+GQ++ V LARAL +K++++++DE
Sbjct: 1389 EEVWW-ALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDE 1447
Query: 174 PFAAIDFKTEREMIFLLKSLLN---EDIMILVSTHNINSIPSFCDRTIFLKKTVLA 226
AA+D +T+ L++S + ED +L H +N+I + R I L K +A
Sbjct: 1448 ATAAVDLETDN----LIQSTIRTQFEDCTVLTIAHRLNTIMDYT-RVIVLDKGEVA 1498
Score = 59.2 bits (143), Expect = 1e-09
Identities = 54/195 (27%), Positives = 94/195 (48%), Gaps = 33/195 (16%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAY 87
L + IPE + A++G G GKS+L A++ + +G + +K +AY
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV---------HMKGS-VAY 703
Query: 88 IPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEA---LENVGM-SSMRQR 143
+PQ W + + ++ G K +N + Y+ V EA L ++ + S +
Sbjct: 704 VPQQA---WIQNDSLRENILFG--KALNEKY------YQQVLEACALLPDLEILPSGDRT 752
Query: 144 QIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER---EMIFLLKSLLNE 196
+IGE LS GQ++RV LARA+ + + + D+P +A+D + E + + +L
Sbjct: 753 EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKN 812
Query: 197 DIMILVSTHNINSIP 211
ILV TH I+ +P
Sbjct: 813 KTRILV-THGISYLP 826
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 62.0 bits (150), Expect = 2e-10
Identities = 64/263 (24%), Positives = 114/263 (43%), Gaps = 56/263 (21%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD-----K 66
L +D+++ Y + A+++VNL + T+ ALIG +G GK+T +AI + L
Sbjct: 5 LSAQDVNIYYGDKQ-AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVT 63
Query: 67 GSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYR 126
G I + Q + Y P+ D V M R M +++
Sbjct: 64 GRILLDGQDI----------YGPRV------------DPVAMRRRVGMVFQKPNPFPTMS 101
Query: 127 IVTEALENVGMSSMRQR----QIGE----------------------LSIGQQKRVFLAR 160
+ + + ++ +R R ++ E LS GQQ+R+ +AR
Sbjct: 102 VFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIAR 161
Query: 161 ALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRT-IF 219
ALA + ++++MDEP +A+D + + L+ L +I+V THN++ D T F
Sbjct: 162 ALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIV-THNMHQAARVSDTTSFF 220
Query: 220 LKKTVLASGLTSDIFNEDNIQKT 242
L ++ G T +F ++T
Sbjct: 221 LVGDLVEHGPTDQLFTNPRDERT 243
>gnl|CDD|172763 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 61.4 bits (149), Expect = 3e-10
Identities = 64/226 (28%), Positives = 109/226 (48%), Gaps = 24/226 (10%)
Query: 15 KDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI--MG-LIPL--DKGSI 69
K+ S+ Y + A++ VN I +TA+IG +G GKST +AI M LIP G++
Sbjct: 43 KNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGAL 101
Query: 70 -----SIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMG-RYKHMNWRRVASNN 123
I+ + + L I + Q + FP + D + G R +N ++
Sbjct: 102 MFDGEDIYGKFTDEVLLRKKIGMVFQKPN---PFPKSIFDNIAYGPRLHGINDKKQLEE- 157
Query: 124 DYRIVTEALENVGM----SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
IV ++L + S + LS GQQ+R+ +AR LA + +++++DEP +A+D
Sbjct: 158 ---IVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214
Query: 180 FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVL 225
K ++ L++ L I++ THN+ D T+F + VL
Sbjct: 215 PKATAKIEDLIQELRGS-YTIMIVTHNMQQASRVSDYTMFFYEGVL 259
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 61.2 bits (148), Expect = 3e-10
Identities = 64/243 (26%), Positives = 118/243 (48%), Gaps = 20/243 (8%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG---- 67
+E +++++ Y + + AL ++N+ I +N+ITALIG +G GKST + + + L +G
Sbjct: 8 IETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIE 66
Query: 68 ------SISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKH--MNWRRV 119
+I++ + I + QT + F + + D + G H + +++
Sbjct: 67 GNVIYEGKNIYSNNFDILELRRKIGMVFQTPN---PFLMSIYDNISYGPKIHGTKDKKKL 123
Query: 120 ASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
+ + AL N + + LS GQQ+R+ +AR LA + VI+MDEP +A+D
Sbjct: 124 DEIVEQSLKKSALWNEVKDKLNTNAL-SLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182
Query: 180 FKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSD--IFNED 237
+ ++ L+ + L E I++ THN+ DRT F + ++D FN
Sbjct: 183 PISTGKIEELIIN-LKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPK 241
Query: 238 NIQ 240
N +
Sbjct: 242 NTK 244
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 61.0 bits (148), Expect = 3e-10
Identities = 58/235 (24%), Positives = 98/235 (41%), Gaps = 28/235 (11%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+ + +S Y G AL+ V + + L G +GAGKSTL + I G+ G I
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRV------------ 119
+ ++ P L + M+ + H+ R
Sbjct: 62 SGHDITRLKNREV--------------PFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA 107
Query: 120 -ASNNDYRI-VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAA 177
AS +D R V+ AL+ VG+ + +LS G+Q+RV +ARA+ K V++ DEP
Sbjct: 108 GASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGN 167
Query: 178 IDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLTSD 232
+D ++ L + + +L++TH+I I R + L L G+ +
Sbjct: 168 LDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVGGE 222
>gnl|CDD|162555 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 544
Score = 60.8 bits (148), Expect = 3e-10
Identities = 57/216 (26%), Positives = 99/216 (45%), Gaps = 30/216 (13%)
Query: 9 KGGLELKDISVTYPNG-YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
+G L ++++++ P G L ++ + A+IG +G+GKSTL + I+G+ P G
Sbjct: 314 EGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373
Query: 68 SISI----FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNN 123
S+ + Q I Y+PQ DV + N R N
Sbjct: 374 SVRLDGADLKQWDRETF-GKHIGYLPQ-------------DVELFPGTVAENIARFGENA 419
Query: 124 DYRIVTEALENVGMSSMRQR-------QIGE----LSIGQQKRVFLARALAQKSQVIIMD 172
D + EA + G+ + R IG LS GQ++R+ LARAL +++++D
Sbjct: 420 DPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLD 479
Query: 173 EPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNIN 208
EP + +D + E+ + +K+L I ++V TH +
Sbjct: 480 EPNSNLDEEGEQALANAIKALKARGITVVVITHRPS 515
>gnl|CDD|183258 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 61.0 bits (149), Expect = 4e-10
Identities = 49/185 (26%), Positives = 82/185 (44%), Gaps = 33/185 (17%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
GL+L+ + +Y ++ ++L + + L+G +G GKSTL + + GL + G I
Sbjct: 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW 62
Query: 71 IFNQTVENALKADL-IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY---- 125
I + V AD IA + Q ++ Y HM+ V N Y
Sbjct: 63 IGGRVVNELEPADRDIAMVFQNYAL----------------YPHMS---VRENMAYGLKI 103
Query: 126 ---------RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFA 176
V EA + + + R+ ELS GQ++RV + RA+ ++ V + DEP +
Sbjct: 104 RGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLS 163
Query: 177 AIDFK 181
+D K
Sbjct: 164 NLDAK 168
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 60.9 bits (148), Expect = 4e-10
Identities = 56/240 (23%), Positives = 114/240 (47%), Gaps = 26/240 (10%)
Query: 9 KGGLELKDISVTYPN--GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
+G +E + ++ YP AL+ +NL + AL+G +GAGKSTLFQ ++
Sbjct: 335 RGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQS 394
Query: 67 GSISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNN 123
G I + + A+L +A +PQ + F V + + GR A++
Sbjct: 395 GRILLDGVDLRQLDPAELRARMALVPQDPVL---FAASVMENIRYGRPD-------ATDE 444
Query: 124 DYRIVTEALENVG----MSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPF 175
+ A + +GE LS GQ++R+ +ARA+ + + ++++DE
Sbjct: 445 EVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEAT 504
Query: 176 AAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIF 234
+A+D ++E+ + L++L+ + L+ H + ++ DR + + + ++A G +++
Sbjct: 505 SALDAESEQLVQQALETLM-KGRTTLIIAHRLATVLK-ADRIVVMDQGRIVAQGTHAELI 562
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 60.2 bits (147), Expect = 6e-10
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 39/177 (22%)
Query: 45 GLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVE----------------NALKADLIAYI 88
G NGAGK++L + + GL D G + + + +K +L A
Sbjct: 34 GPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTELTAL- 92
Query: 89 PQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGEL 148
E++ + ++R+ D + EAL VG++ + +L
Sbjct: 93 ---ENLRF-------------------YQRLHGPGDDEALWEALAQVGLAGFEDVPVRQL 130
Query: 149 SIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTH 205
S GQQ+RV LAR ++ + I+DEPF AID + + LL + M++++TH
Sbjct: 131 SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTH 187
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 59.6 bits (144), Expect = 8e-10
Identities = 59/227 (25%), Positives = 102/227 (44%), Gaps = 37/227 (16%)
Query: 25 YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKG----------SISIFNQ 74
+ A+ D ++ I +N IT IG +G GKST+ +++ + L KG ++ +
Sbjct: 21 FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGK 80
Query: 75 TVENALKADLIAYIPQTESIDWTFPILVEDVVMMG----RYK-------HMNWRRVASNN 123
V+ + I + Q + F + + D V G RYK + A +
Sbjct: 81 GVDPVVVRRYIGMVFQQPN---PFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWD 137
Query: 124 DYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
+ V + L+ G+S LS GQQ+R+ +ARA+A + +V+++DEP +A+D
Sbjct: 138 E---VKDKLKVSGLS---------LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIAT 185
Query: 184 REMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLASGLT 230
R + L+ L +D I + THN+ D T F + T
Sbjct: 186 RRVEELMVE-LKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRT 231
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous.
Length = 230
Score = 59.3 bits (144), Expect = 1e-09
Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 24/225 (10%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD----KGSISIFNQTV-ENALK 81
++D+NL + + AL+G +G+GKS AI+GL+P G I + + + +++
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60
Query: 82 ADLIAYIPQT--ESIDWTFPI---LVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVG 136
IA I Q + + F + +E + +G+ S ++ EALE VG
Sbjct: 61 GRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKL---------SKQARALILEALEAVG 111
Query: 137 MSSMRQ---RQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSL 193
+ + + +LS G +RV +A AL + +I DEP +D + ++ LL+ L
Sbjct: 112 LPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLREL 171
Query: 194 LNED-IMILVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNE 236
IL+ TH++ + D + ++ G +IF
Sbjct: 172 RQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYN 216
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 58.7 bits (142), Expect = 2e-09
Identities = 59/194 (30%), Positives = 93/194 (47%), Gaps = 24/194 (12%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFN----QTVENALKAD 83
L +V+ I E + A++G +G+GKSTL + GL G + IFN + +A KA+
Sbjct: 25 LHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDV-IFNGQPMSKLSSAAKAE 83
Query: 84 L----IAYIPQTESIDWTFPILVEDVVM---MGRYKHMNWRRVASNNDYRIVTEALENVG 136
L + +I Q + F L E+V M +G+ K A E L VG
Sbjct: 84 LRNQKLGFIYQFHHLLPDFTAL-ENVAMPLLIGKKKPAEINSRAL--------EMLAAVG 134
Query: 137 MSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLN- 195
+ + ELS G+++RV +ARAL ++++ DEP +D + + IF L LN
Sbjct: 135 LEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA-DSIFQLLGELNR 193
Query: 196 -EDIMILVSTHNIN 208
+ LV TH++
Sbjct: 194 LQGTAFLVVTHDLQ 207
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 58.2 bits (141), Expect = 2e-09
Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 42/233 (18%)
Query: 12 LELKDISVTY--PNG-YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
L++KD+ VT+ P+G A+ D+N + ++G +G+GKS A+MGL+ G
Sbjct: 13 LDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA-ANGR 71
Query: 69 IS---IFN--------QTVENALKADLIAYI---PQTESIDWTFPI---LVEDVVMMGRY 111
I FN + N L+A+ I+ I P T S++ + L+E V+M+ +
Sbjct: 72 IGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT-SLNPYMRVGEQLME-VLML--H 127
Query: 112 KHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIG----ELSIGQQKRVFLARALAQKSQ 167
K M+ + A R+ L+ V M R+R + E S G ++RV +A AL + +
Sbjct: 128 KGMS-KAEAFEESVRM----LDAVKMPEARKR-MKMYPHEFSGGMRQRVMIAMALLCRPK 181
Query: 168 VIIMDEPFAAIDFKTEREMIFLLKSLLNE----DIMILVSTHNINSIPSFCDR 216
++I DEP A+D + +++ LL L E IMI TH++ + CD+
Sbjct: 182 LLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMI---THDLGVVAGICDK 231
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 58.2 bits (140), Expect = 2e-09
Identities = 64/223 (28%), Positives = 109/223 (48%), Gaps = 24/223 (10%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSI---SIF----NQTVENAL 80
L D+NL I N +TA IG +G GKST + + L L +G+ I+ N +
Sbjct: 98 LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157
Query: 81 KADLIAYIPQTESIDWTFPILVEDVVMMG-RYKHMNWRRVASNNDYRIVTEALENVGMSS 139
+L I F + + D V G R +N R++ +IV ++L++ +
Sbjct: 158 SLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILE----KIVEKSLKSAALWD 213
Query: 140 MRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAID-FKTER--EMIFLLKS 192
+ + + LS GQQ+R+ +ARA+A + +V++MDEP +A+D T + E+I LK
Sbjct: 214 EVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELK- 272
Query: 193 LLNEDIMILVSTHNINSIPSFCDRTIFLKKT-VLASGLTSDIF 234
+ I++ TH++ D T+F + + +G T IF
Sbjct: 273 ---KKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIF 312
>gnl|CDD|162807 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se.
Length = 253
Score = 57.1 bits (138), Expect = 4e-09
Identities = 55/247 (22%), Positives = 107/247 (43%), Gaps = 33/247 (13%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L++ +S +Y G DV+ + + ++G +G+GKSTL + G + D G+ +
Sbjct: 4 LQVSGLSKSYGGGK-GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62
Query: 72 FN---QTVENALKADLIAYIPQTES-----IDWTF----PILVEDVVMMGRYKHMNW--R 117
+E + + + E +W F P D + M N R
Sbjct: 63 IMRSGAELE-------LYQLSEAERRRLMRTEWGFVHQNP---RDGLRMRVSAGANIGER 112
Query: 118 RVASNNDY--RIVTEA---LENVGMSSMR-QRQIGELSIGQQKRVFLARALAQKSQVIIM 171
+A + I A LE V + R S G Q+R+ +AR L + +++ M
Sbjct: 113 LMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFM 172
Query: 172 DEPFAAIDFKTEREMIFLLKSLLNE-DIMILVSTHNINSIPSFCDRTIFLKK-TVLASGL 229
DEP +D + ++ LL+ L+ + + +++ TH++ R + +++ V+ SGL
Sbjct: 173 DEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232
Query: 230 TSDIFNE 236
T + ++
Sbjct: 233 TDQVLDD 239
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 57.0 bits (137), Expect = 5e-09
Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 17/237 (7%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQ--TVENAL----K 81
L V+ I + ++IG NG+GKST + I GL +G + I + T EN K
Sbjct: 23 LNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82
Query: 82 ADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMR 141
++ P + + T VED V G M + + + V EAL V M +
Sbjct: 83 IGMVFQNPDNQFVGAT----VEDDVAFG----MENQGIPREEMIKRVDEALLAVNMLDFK 134
Query: 142 QRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIMI 200
R+ LS GQ++RV +A +A + ++II+DE + +D +E++ ++ + + + +
Sbjct: 135 TREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTV 194
Query: 201 LVSTHNINSIPSFCDRTIFLKK-TVLASGLTSDIFNEDNIQKTFGAQVSPQSSILNE 256
L TH+++ S DR + +K ++ S++F G V S+++ +
Sbjct: 195 LSITHDLDEAAS-SDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVPFSSNLMKD 250
>gnl|CDD|162277 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or
lesions in the genetic loci have been linked to the
aetiology of asthma, bronchiectasis, chronic obstructive
pulmonary disease etc. Disease-causing mutations have
been studied by 36Cl efflux assays in vitro cell
cultures and electrophysiology, all of which point to
the impairment of chloride channel stability and not the
biosynthetic processing per se.
Length = 1490
Score = 57.2 bits (138), Expect = 5e-09
Identities = 51/188 (27%), Positives = 88/188 (46%), Gaps = 34/188 (18%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAY 87
L++++ + + + A+ G G+GKS+L IMG + +G I + I++
Sbjct: 442 LKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIK----------HSGRISF 491
Query: 88 IPQTESIDWTFPILVEDVVMMG-RYKHMNWRRVAS----NNDYRIVTEALENVGMSSMRQ 142
PQT W P ++D ++ G Y + V D + E + V
Sbjct: 492 SPQTS---WIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTV------- 541
Query: 143 RQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF--LLKSLLNE 196
+GE LS GQ+ R+ LARA+ + + + ++D PF +D TE+E IF L L++
Sbjct: 542 --LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKE-IFESCLCKLMSN 598
Query: 197 DIMILVST 204
ILV++
Sbjct: 599 KTRILVTS 606
Score = 44.5 bits (105), Expect = 3e-05
Identities = 51/220 (23%), Positives = 103/220 (46%), Gaps = 35/220 (15%)
Query: 8 TKGGLELKDISVTYPN-GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
+ G ++++ ++ Y G L+D++ + L+G G+GKSTL A++ L+ +
Sbjct: 1214 SGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTE- 1272
Query: 67 GSISI----FNQ-TVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVAS 121
G I I +N T++ KA IPQ + + G ++ N
Sbjct: 1273 GEIQIDGVSWNSVTLQTWRKA--FGVIPQ------------KVFIFSGTFR-KNLDPYEQ 1317
Query: 122 NNDYRIVTEALENVGMSSMRQRQIGEL-----------SIGQQKRVFLARALAQKSQVII 170
+D I A E VG+ S+ ++ +L S G ++ + LAR++ K+++++
Sbjct: 1318 WSDEEIWKVA-EEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILL 1376
Query: 171 MDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSI 210
+DEP A +D T + + LK + + +++S H + ++
Sbjct: 1377 LDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEAL 1415
>gnl|CDD|162129 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei.
Length = 659
Score = 57.1 bits (138), Expect = 5e-09
Identities = 48/190 (25%), Positives = 90/190 (47%), Gaps = 23/190 (12%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
G++ ++I + PNG +E ++ +P + G NG GKS+LF+ + L P+ G ++
Sbjct: 451 GIKFENIPLVTPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLT 510
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTE 130
+ + Y+PQ + T L + ++ + M RR S+ D + +
Sbjct: 511 K---PAKGK-----LFYVPQRPYM--TLGTLRDQIIYPDSSEDMK-RRGLSDKD---LEQ 556
Query: 131 ALENVGMSSMRQRQIG---------ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
L+NV ++ + +R+ G LS G+++R+ +AR K Q I+DE +A+
Sbjct: 557 ILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVD 616
Query: 182 TEREMIFLLK 191
E M L +
Sbjct: 617 VEGYMYRLCR 626
>gnl|CDD|162558 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion.
Length = 694
Score = 56.3 bits (136), Expect = 1e-08
Identities = 55/237 (23%), Positives = 113/237 (47%), Gaps = 24/237 (10%)
Query: 2 KTAVASTKGGLELKDISVTY-PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG 60
A+ +G + ++I Y P+ L ++NL I ++G +G+GKSTL + +
Sbjct: 446 LAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQR 505
Query: 61 LIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVA 120
L G + + + A A L + +++++ V+ R N
Sbjct: 506 LYTPQHGQVLVDGVDLAIADPAWLRRQMG----------VVLQENVLFSRSIRDNIALCN 555
Query: 121 SNNDYRIVTEALENVG----MSSMRQ---RQIGE----LSIGQQKRVFLARALAQKSQVI 169
+ V A + G +S + Q ++GE LS GQ++R+ +ARAL +++
Sbjct: 556 PGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRIL 615
Query: 170 IMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKKTVLA 226
I DE +A+D+++E ++ ++ + +I+++ H ++++ + CDR I L+K +A
Sbjct: 616 IFDEATSALDYESEALIMRNMREICRGRTVIIIA-HRLSTVRA-CDRIIVLEKGQIA 670
>gnl|CDD|162132 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
Length = 711
Score = 55.5 bits (134), Expect = 2e-08
Identities = 54/229 (23%), Positives = 102/229 (44%), Gaps = 31/229 (13%)
Query: 9 KGGLELKDISVTYPN--GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDK 66
+G +E +D+S +YPN L+ + + + AL+G +G+GKST+ + L
Sbjct: 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535
Query: 67 GSISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNN 123
G + + + L +A + Q E V+ G + +
Sbjct: 536 GQVLLDGVPLVQYDHHYLHRQVALVGQ------------EPVLFSGSVRENIAYGLTDTP 583
Query: 124 DYRIVTEALEN------VGMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVIIMDE 173
D I+ A + + ++GE LS GQ++R+ +ARAL +K +V+I+DE
Sbjct: 584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDE 643
Query: 174 PFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLKK 222
+A+D + E+ L +S +L+ H ++++ D+ + LKK
Sbjct: 644 ATSALDAECEQ---LLQESRSRASRTVLLIAHRLSTVER-ADQILVLKK 688
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2.
Length = 520
Score = 55.2 bits (133), Expect = 2e-08
Identities = 55/247 (22%), Positives = 109/247 (44%), Gaps = 39/247 (15%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL--IPLDKGSI 69
+E+K+++ + +G L++++ I E + ++G +GAGKS L + G+ G I
Sbjct: 1 IEVKNLTKKF-DGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI 59
Query: 70 SIFNQTV-ENALKADLIAYIPQ----------TESIDWTFPILVEDVVMMGRYKHMNWRR 118
I++ + E + + + + E +D+ + R M R
Sbjct: 60 -IYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 119 VASNNDYRI---VTEALENVG---------------MSSMRQRQIG---ELSIGQQKRVF 157
A D + V EALE +G M + R +LS G+++RV
Sbjct: 119 FALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVV 178
Query: 158 LARALAQKSQVIIMDEPFAAIDFKTEREMIF--LLKSLLNEDIMILVSTHNINSIPSFCD 215
LAR LA++ + + DEP +D +T +++ L +++ I +++++H I D
Sbjct: 179 LARQLAKEPFLFLADEPTGTLDPQTA-KLVHNALEEAVKASGISMVLTSHWPEVIEDLSD 237
Query: 216 RTIFLKK 222
+ I+L+
Sbjct: 238 KAIWLEN 244
Score = 54.0 bits (130), Expect = 4e-08
Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 67/228 (29%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
A+++V+L + E I ++G +GAGK+TL + I G++ G + N D
Sbjct: 299 AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV--------NVRVGD--- 347
Query: 87 YIPQTESIDWTFPILVEDVVMMGRYK------HMNW-----RRVASNNDYRIVTEA---- 131
E +D T P GR K H + R V N +TEA
Sbjct: 348 -----EWVDMTKP----GPDGRGRAKRYIGILHQEYDLYPHRTVLDN-----LTEAIGLE 393
Query: 132 -------------LENVGMSSMRQRQI-----GELSIGQQKRVFLARALAQKSQVIIMDE 173
L+ VG + +I ELS G++ RV LA+ L ++ +++I+DE
Sbjct: 394 LPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDE 453
Query: 174 PFAAIDFKTEREMIFLLKSLLN-----EDIMILVSTHNINSIPSFCDR 216
P +D T+ ++ S+L E I+VS H+++ + CDR
Sbjct: 454 PTGTMDPITKVDVT---HSILKAREEMEQTFIIVS-HDMDFVLDVCDR 497
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 55.0 bits (133), Expect = 2e-08
Identities = 55/212 (25%), Positives = 99/212 (46%), Gaps = 27/212 (12%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
++L I+ Y + AL D+ L P+ L+G +GAGKS+L + + L G+++I
Sbjct: 3 IQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGR----YKHMNWR--------RV 119
D + P ++I L +V M+ + + H+ + RV
Sbjct: 62 AGN------HFDF-SKTPSDKAIR----ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRV 110
Query: 120 ASNNDYRIVTEA---LENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFA 176
+ + + A LE + + R LS GQQ+RV +ARAL + QV++ DEP A
Sbjct: 111 LGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTA 170
Query: 177 AIDFKTEREMIFLLKSLLNEDIMILVSTHNIN 208
A+D + +++ +++ L I ++ TH +
Sbjct: 171 ALDPEITAQIVSIIRELAETGITQVIVTHEVE 202
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 54.1 bits (130), Expect = 4e-08
Identities = 51/220 (23%), Positives = 98/220 (44%), Gaps = 24/220 (10%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L +S Y AL +V+L I + I LIG NGAGK+TL + G G I
Sbjct: 6 LSFDKVSAHY-GKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 64
Query: 72 FNQTVENALKADL----IAYIPQTESIDWTFP-ILVEDVVMMGRYKHMNWRRVASNNDYR 126
+ + + A + +A +P+ + F + VE+ + MG + A + ++
Sbjct: 65 DGKDITDWQTAKIMREAVAIVPEGRRV---FSRMTVEENLAMGGF-------FAERDQFQ 114
Query: 127 IVTEALENV-----GMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFK 181
E ++ V + R ++ G +S G+Q+ + + RAL + +++++DEP +
Sbjct: 115 ---ERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPI 171
Query: 182 TEREMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFLK 221
+++ ++ L + + I + N N DR L+
Sbjct: 172 IIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLE 211
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 53.6 bits (129), Expect = 6e-08
Identities = 48/207 (23%), Positives = 92/207 (44%), Gaps = 27/207 (13%)
Query: 12 LELKDISVTY------------PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIM 59
LE+ D+ V + P A++ V L + E ++G +G GKST +AI+
Sbjct: 9 LEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAII 68
Query: 60 GLIPLDKGSISIFNQTVENALKADL------IAYIPQTESIDWTFPILVEDVV---MMGR 110
GL+ G ++ + + + I I Q + + +++ +
Sbjct: 69 GLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTY 128
Query: 111 YKHMNWRRVASNNDYRIVTEALENVGM-SSMRQRQIGELSIGQQKRVFLARALAQKSQVI 169
+ ++ + V V + VG+ ++ R E S GQ +R+ +ARAL + ++I
Sbjct: 129 HPKLSRQEVKDR-----VKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLI 183
Query: 170 IMDEPFAAIDFKTEREMIFLLKSLLNE 196
I DEP +A+D + +++ LL+ L E
Sbjct: 184 ICDEPVSALDVSIQAQVVNLLQQLQRE 210
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 53.0 bits (127), Expect = 8e-08
Identities = 42/161 (26%), Positives = 71/161 (44%), Gaps = 27/161 (16%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAY 87
L+ ++ +P + L G NGAGK+TL + I GL+ +KG I Q++ K DL Y
Sbjct: 17 LQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI----KKDLCTY 72
Query: 88 IPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQ----- 142
Q + +G +N N + + VG++ + +
Sbjct: 73 QKQ--------------LCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE 118
Query: 143 ----RQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
G LS GQ+++V L R K+++ ++DEP A+D
Sbjct: 119 HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 52.9 bits (127), Expect = 1e-07
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 37/205 (18%)
Query: 12 LELKDISVT--YPNGYC------ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP 63
LE++++S T Y G+ A++ ++ + E A+IG NG+GKSTL + + G+I
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 64 LDKGSISIFNQTVE---NALKADLIAYIPQTESIDWT----------FPI-LVEDVVMMG 109
G + I + + + ++ I I Q S FP+ L D+
Sbjct: 65 PTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQ 124
Query: 110 RYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGE-LSIGQQKRVFLARALAQKSQV 168
R K + E L VG+ L+ GQ++R+ LARAL + +V
Sbjct: 125 REKQII--------------ETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKV 170
Query: 169 IIMDEPFAAIDFKTEREMIFLLKSL 193
II DE A++D ++I L+ L
Sbjct: 171 IIADEALASLDMSMRSQLINLMLEL 195
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 52.2 bits (125), Expect = 1e-07
Identities = 55/190 (28%), Positives = 86/190 (45%), Gaps = 13/190 (6%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVEN-------A 79
A+E V+ + +L+G +G+GKST +A++ L+ G I Q ++ A
Sbjct: 339 AVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQA 398
Query: 80 LKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSS 139
L+ D I +I Q V D +M H + V LE VG+
Sbjct: 399 LRRD-IQFIFQDPYASLDPRQTVGDSIMEPLRVH---GLLPGKAAAARVAWLLERVGLLP 454
Query: 140 MRQ-RQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-D 197
R E S GQ++R+ +ARALA +VII DE +A+D ++I LL L +
Sbjct: 455 EHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFG 514
Query: 198 IMILVSTHNI 207
I L +H++
Sbjct: 515 IAYLFISHDM 524
Score = 44.1 bits (104), Expect = 5e-05
Identities = 28/98 (28%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 139 SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDI 198
++ R +LS G ++RV +A AL+ + V+I DEP A+D + +++ L+K L E
Sbjct: 160 TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS 219
Query: 199 M-ILVSTHNINSIPSFCDRTIFL-KKTVLASGLTSDIF 234
M ++ TH++ + DR + + + + +G IF
Sbjct: 220 MGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIF 257
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 51.7 bits (124), Expect = 2e-07
Identities = 57/229 (24%), Positives = 101/229 (44%), Gaps = 61/229 (26%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGL----------------IPLDKGS-- 68
A++ V++ + E I L+G +G+GKS + +AI G+ I L + S
Sbjct: 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81
Query: 69 ---------ISIFNQTVENALKA------DLIAYIPQTESIDWTFPILVEDVVMMGR-YK 112
+S+ Q ++ L L+ IP WT+ GR ++
Sbjct: 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIP-----GWTYK---------GRWWQ 127
Query: 113 HMNWRRVASNNDYRIVTEALENVGMSS----MRQRQIGELSIGQQKRVFLARALAQKSQV 168
WR+ R E L VG+ MR EL+ G+ ++V +A ALA + ++
Sbjct: 128 RFGWRK-------RRAIELLHRVGIKDHKDAMRSFPY-ELTEGECQKVMIAIALANQPRL 179
Query: 169 IIMDEPFAAIDFKTEREMIFLLKSL-LNEDIMILVSTHNINSIPSFCDR 216
+I DEP A++ T+ ++ LL L N + IL+ +H++ + + D+
Sbjct: 180 LIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADK 228
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related.
Length = 585
Score = 51.4 bits (123), Expect = 3e-07
Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 21/186 (11%)
Query: 9 KGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
KG +E + I+ + N + DV+ A++G GAGK+TL + + G
Sbjct: 332 KGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 69 ISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIV 128
I I + + ES+ + + +D + R N R V
Sbjct: 392 ILIDGIDINTVTR----------ESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEV 441
Query: 129 TEALENVGMSSMRQR-------QIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFAA 177
EA + + +GE LS G+++R+ +ARA+ + + ++++DE +A
Sbjct: 442 YEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSA 501
Query: 178 IDFKTE 183
+D +TE
Sbjct: 502 LDVETE 507
>gnl|CDD|182996 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 51.5 bits (124), Expect = 3e-07
Identities = 50/201 (24%), Positives = 81/201 (40%), Gaps = 48/201 (23%)
Query: 17 ISVTYPNGYCA------LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
IS+ + + L++ L I +N L+G NGAGKSTL + + G + LD G I
Sbjct: 4 ISIH--GAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRII 61
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMG---------RYKHMNWRRVAS 121
+ L+ D + T V D V G RY ++ V +
Sbjct: 62 YEQDLIVARLQQDPPRNVEGT----------VYDFVAEGIEEQAEYLKRYHDIS-HLVET 110
Query: 122 N------NDYRIVTEALENVGMSSMRQR------QIG--------ELSIGQQKRVFLARA 161
+ N+ + E L++ + + R Q+G LS G ++ L RA
Sbjct: 111 DPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDAALSSLSGGWLRKAALGRA 170
Query: 162 LAQKSQVIIMDEPFAAIDFKT 182
L V+++DEP +D +T
Sbjct: 171 LVSNPDVLLLDEPTNHLDIET 191
Score = 46.5 bits (111), Expect = 7e-06
Identities = 53/195 (27%), Positives = 85/195 (43%), Gaps = 41/195 (21%)
Query: 28 LEDVNLFIPENTIT-------------ALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQ 74
+E+VN I + ALIG NG GK+TL + ++G + D G I
Sbjct: 322 MENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC--- 378
Query: 75 TVENALKADLIAYIPQTESI---DWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEA 131
K + +AY Q + + T V D + G+ + V N R V
Sbjct: 379 ----GTKLE-VAYFDQHRAELDPEKT----VMDNLAEGK------QEVMVNGRPRHVLGY 423
Query: 132 LENVGMSSMRQRQ-IGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLL 190
L++ R + LS G++ R+ LAR + S ++I+DEP +D +T + LL
Sbjct: 424 LQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVET----LELL 479
Query: 191 KSLLNE--DIMILVS 203
+ LL+ ++LVS
Sbjct: 480 EELLDSYQGTVLLVS 494
>gnl|CDD|162130 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein.
Length = 617
Score = 51.2 bits (123), Expect = 3e-07
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 16/175 (9%)
Query: 42 ALIGLNGAGKSTLFQAIMGLIP--LDKGSISIFNQTVENALKADLI-AYIPQTESIDWTF 98
A++G +GAGK+TL A+ P + + N +A + I AY+ Q D
Sbjct: 55 AVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQD---DLFI 111
Query: 99 PILV--EDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGE------LSI 150
P L E ++ + M RRV V E L+ +G+ +IG LS
Sbjct: 112 PTLTVREHLMFQAHLR-MP-RRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSG 169
Query: 151 GQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTH 205
G++KR+ A L ++ DEP + +D ++ +LK L + I+ + H
Sbjct: 170 GERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIH 224
>gnl|CDD|182515 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 51.1 bits (123), Expect = 3e-07
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 19/167 (11%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LEL++++ Y + ++ +NL I + LIG NG+GKSTL + GL G I +
Sbjct: 323 LELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEA 131
+ V D + F L+ + +V +
Sbjct: 383 DGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGP--------------EGKPANPALVEKW 428
Query: 132 LENVGMSSMRQRQIGE-----LSIGQQKRVFLARALAQKSQVIIMDE 173
LE + M+ + + G LS GQ+KR+ L ALA++ ++++DE
Sbjct: 429 LERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 50.1 bits (120), Expect = 6e-07
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 34/202 (16%)
Query: 4 AVASTKGGLELKDISVTYP-NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLI 62
V +G L++ TYP + ALE+VN + + + G G+GKSTL I
Sbjct: 306 PVPEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF 365
Query: 63 PLDKGSISIFNQTVE----NALKADLIAYIPQTESIDWTFPILVEDVV----MMGRYKHM 114
+ +G I + + ++ ++ L A + QT P L D V +GR
Sbjct: 366 DVSEGDIRFHDIPLTKLQLDSWRSRL-AVVSQT-------PFLFSDTVANNIALGRPD-- 415
Query: 115 NWRRVASNNDYRIVTEALENVGMSSMR-----QRQIGE----LSIGQQKRVFLARALAQK 165
A+ + V L +V +R ++GE LS GQ++R+ +ARAL
Sbjct: 416 -----ATQQEIEHVAR-LASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLN 469
Query: 166 SQVIIMDEPFAAIDFKTEREMI 187
++++I+D+ +A+D +TE +++
Sbjct: 470 AEILILDDALSAVDGRTEHQIL 491
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 49.8 bits (120), Expect = 7e-07
Identities = 39/169 (23%), Positives = 79/169 (46%), Gaps = 25/169 (14%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+E D++ + +LE I E + ++G NG GK+T + + G++ D+G +
Sbjct: 341 VEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDP 398
Query: 72 FNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASN-NDYRIVTE 130
LK I+Y PQ D + VED++ R + + +E
Sbjct: 399 -------ELK---ISYKPQYIKPD--YDGTVEDLL----------RSITDDLGSSYYKSE 436
Query: 131 ALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
++ + + + + + +LS G+ +RV +A L++ + + ++DEP A +D
Sbjct: 437 IIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLD 485
Score = 36.7 bits (86), Expect = 0.006
Identities = 47/184 (25%), Positives = 81/184 (44%), Gaps = 21/184 (11%)
Query: 32 NLFIP-ENTITALIGLNGAGKSTLFQAIMG-LIPLDKGSISIFNQTVENALKADLIAYIP 89
L IP E +T ++G NG GK+T + + G LIP E +++
Sbjct: 92 GLPIPKEGKVTGILGPNGIGKTTAVKILSGELIP-------NLGDYEEEPSWDEVLKRFR 144
Query: 90 QTESIDWTFPILVE---DVVMMGRYKHM-------NWRRVASNNDYR-IVTEALENVGMS 138
TE ++ F L VV +Y + R + D R + E +E +G+
Sbjct: 145 GTELQNY-FKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLE 203
Query: 139 SMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDI 198
++ R I ELS G+ +RV +A AL + + DEP + +D + + L++ L
Sbjct: 204 NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKY 263
Query: 199 MILV 202
+++V
Sbjct: 264 VLVV 267
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 49.8 bits (119), Expect = 8e-07
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 21/111 (18%)
Query: 148 LSIGQQKRVFLARALAQKSQVIIMDEPFAAID----FKTEREMIFLLKSLLNEDIMILVS 203
LS GQQ+R+ +AR +A + +VI+MDEP +A+D K E M L K+ I++
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNF-----TIVIV 209
Query: 204 THNINSIPSFCDRTIFLKKTVLASGL------------TSDIFNEDNIQKT 242
THN+ D T F + G T IFN + T
Sbjct: 210 THNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFNSPKQKAT 260
Score = 40.6 bits (95), Expect = 4e-04
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 1 MKTAVASTKGGLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAI 58
S + L++++++Y + A+++V IP +TALIG +G GKST+ +++
Sbjct: 3 KTNKKISKNIIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSL 59
>gnl|CDD|185024 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 49.5 bits (119), Expect = 1e-06
Identities = 43/178 (24%), Positives = 76/178 (42%), Gaps = 47/178 (26%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
LE+++++ + NG +++NL + A+IG NG GK+TL + ++G + D G++
Sbjct: 320 LEVENLTKGFDNGPL-FKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV-- 376
Query: 72 FNQTVENALKADLIAYIPQTESID-------------WTFPILVEDVV--MMGRYKHMNW 116
+ ENA I Y Q + D W E V +GR
Sbjct: 377 --KWSENA----NIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL----- 425
Query: 117 RRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEP 174
+ S +D + + + LS G++ R+ + + QK V++MDEP
Sbjct: 426 --LFSQDDIK----------------KSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEP 465
Score = 41.4 bits (98), Expect = 3e-04
Identities = 61/207 (29%), Positives = 85/207 (41%), Gaps = 59/207 (28%)
Query: 43 LIGLNGAGKSTLFQAIMG--LIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPI 100
LIG NG GKST F I+G L P G++S+ L+ D A+ T
Sbjct: 32 LIGANGCGKST-FMKILGGDLEP-SAGNVSLDPNERLGKLRQDQFAFEEFT--------- 80
Query: 101 LVEDVVMMGRYKHMNWRRVASNNDYRI--VTEALENVGMSS-------------MRQRQI 145
V D V+MG H V D RI + E E GM + +
Sbjct: 81 -VLDTVIMG---HTELWEVKQERD-RIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARA 135
Query: 146 GELSIG-----QQK-------------RVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
GEL +G +Q RV LA+AL ++++DEP +D T I
Sbjct: 136 GELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINT----I 191
Query: 188 FLLKSLLNE--DIMILVS--THNINSI 210
L+ +LNE MI++S H +NS+
Sbjct: 192 RWLEDVLNERNSTMIIISHDRHFLNSV 218
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake.
Length = 555
Score = 48.4 bits (115), Expect = 2e-06
Identities = 51/210 (24%), Positives = 83/210 (39%), Gaps = 24/210 (11%)
Query: 8 TKGGLELKDISVTYPN-----GYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLI 62
+ +ELKD+ + G+ AL ++L I + I ++G NG GKSTL + GL
Sbjct: 334 SVDSIELKDVHMNPKAPEGSEGF-ALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY 392
Query: 63 PLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASN 122
+G I + V + D S + L +D++ +H +
Sbjct: 393 IPQEGEILLDGAAVSADSRDDY----RDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQ- 447
Query: 123 NDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID--- 179
Y E + V + LS GQQKR+ L A + +++ DE A D
Sbjct: 448 --YLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAF 505
Query: 180 ---FKTEREMIFLLKSLLNEDIMILVSTHN 206
F E LL L + I++ +H+
Sbjct: 506 KRFFYEE-----LLPDLKRQGKTIIIISHD 530
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 48.1 bits (115), Expect = 3e-06
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 34/180 (18%)
Query: 14 LKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFN 73
L++++ Y +D+NL I E +G +G GKSTL + I GL + G + I
Sbjct: 6 LRNVTKAY-GDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE 64
Query: 74 QTVENALKADL-IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY------- 125
+ + + A+ + + Q+ ++ Y H++ VA N +
Sbjct: 65 KRMNDVPPAERGVGMVFQSYAL----------------YPHLS---VAENMSFGLKLAGA 105
Query: 126 ------RIVTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
+ V + E + ++ + R+ LS GQ++RV + R L + V ++DEP + +D
Sbjct: 106 KKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 47.7 bits (114), Expect = 3e-06
Identities = 50/213 (23%), Positives = 89/213 (41%), Gaps = 56/213 (26%)
Query: 33 LFIPENTIT-----ALIGLNGAGKSTLFQAIMGLIPLDKGS-ISIFNQTVENALKADLIA 86
L +P T+ A +G NG+GKS L +A+ G +PL G S F+ + +
Sbjct: 19 LQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFE----- 73
Query: 87 YIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY---------RIVTEALEN--- 134
Q + LV D W+R +N D R E +++
Sbjct: 74 ---QLQK-------LVSD----------EWQR--NNTDMLSPGEDDTGRTTAEIIQDEVK 111
Query: 135 -----------VGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE 183
G++++ R+ LS G+ ++ L +AL + ++I+DEPF +D +
Sbjct: 112 DPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171
Query: 184 REMIFLLKSLLNEDIMILVSTHNINSIPSFCDR 216
+++ LL SL I +++ + + IP F
Sbjct: 172 QQLAELLASLHQSGITLVLVLNRFDEIPDFVQF 204
Score = 45.0 bits (107), Expect = 2e-05
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 18/149 (12%)
Query: 43 LIGLNGAGKSTLFQAIMG-----------LIPLDKGSISIFNQTVENALKADLIAYIPQT 91
++G NGAGKSTL I G L +GS +T+ + K I Y+ +
Sbjct: 291 IVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGS----GETIWDIKKH--IGYVSSS 344
Query: 92 ESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSS-MRQRQIGELSI 150
+D+ V +V++ G + + + S+ ++ + L+ +G+ LS
Sbjct: 345 LHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSW 404
Query: 151 GQQKRVFLARALAQKSQVIIMDEPFAAID 179
GQQ+ + RAL + ++I+DEP +D
Sbjct: 405 GQQRLALIVRALVKHPTLLILDEPLQGLD 433
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 47.2 bits (112), Expect = 5e-06
Identities = 48/210 (22%), Positives = 95/210 (45%), Gaps = 18/210 (8%)
Query: 13 ELKDISVTYPNG--YCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
+LKD+ +G + AL +++ +PE I +IGLNG+GKSTL I G+ +KG++
Sbjct: 23 KLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVD 82
Query: 71 IFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTE 130
I A+ + L + E+I+ +MMG K I+ E
Sbjct: 83 IKGSAALIAISSGLNGQLTGIENIELKG-------LMMGLTK---------EKIKEIIPE 126
Query: 131 ALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLL 190
+E + + + S G + R+ A ++ ++++DE + D ++ + +
Sbjct: 127 IIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKM 186
Query: 191 KSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
+ I +H+++ + SFC + ++L
Sbjct: 187 NEFKEQGKTIFFISHSLSQVKSFCTKALWL 216
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein.
Length = 1394
Score = 46.6 bits (111), Expect = 7e-06
Identities = 57/232 (24%), Positives = 98/232 (42%), Gaps = 69/232 (29%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAI-----MGLI----------PLDKG---SI 69
L +V+ ++ T+TAL+G +GAGK+TL + G+I PLD SI
Sbjct: 779 LNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838
Query: 70 SIFNQ--------TVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVAS 121
Q TV +L+ AY+ Q +S+ +
Sbjct: 839 GYVQQQDLHLPTSTVRESLR--FSAYLRQPKSVS-----------------------KSE 873
Query: 122 NNDYRIVTEALENVGMSSMRQRQIGE----LSIGQQKRVFLARALAQKSQVII-MDEPFA 176
+Y V E ++ + M S +G L++ Q+KR+ + L K ++++ +DEP +
Sbjct: 874 KMEY--VEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTS 931
Query: 177 AIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPS------FCDRTIFLKK 222
+D +T + L++ L + IL + H PS F DR + L+K
Sbjct: 932 GLDSQTAWSICKLMRKLADHGQAILCTIHQ----PSAILFEEF-DRLLLLQK 978
Score = 34.3 bits (79), Expect = 0.032
Identities = 43/186 (23%), Positives = 77/186 (41%), Gaps = 21/186 (11%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLI---PLDKGSISIFN----QTVENAL 80
L+ ++ I +T ++G G+G STL + I + + ++ + ++
Sbjct: 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHY 136
Query: 81 KADLIAYIPQTESIDWTFPILV--EDVVMMGRYKHMNWR-RVASNNDYR--IVTEALENV 135
+ D++ Y +T D FP L E + R K R S +Y I +
Sbjct: 137 RGDVV-YNAET---DVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATY 192
Query: 136 GMSSMRQRQIGE-----LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLL 190
G+S R ++G +S G++KRV +A A +++ D +D T E I L
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRAL 252
Query: 191 KSLLNE 196
K+ N
Sbjct: 253 KTSANI 258
>gnl|CDD|162636 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PubMed:12554644) or associated with the
membrane (PubMed:11943156). The SUF system also includes
a cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA.
Length = 243
Score = 46.5 bits (111), Expect = 7e-06
Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 32/215 (14%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG--LIPLDKGSI 69
L++KD+ V+ L+ VNL + + I A++G NG+GKSTL + I G + G+I
Sbjct: 1 LKIKDLHVSV-EDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI 59
Query: 70 SIFNQTVENALKADLIA----YI-PQTESIDWTFPILVEDV--VMMGRYKH--MNWRRVA 120
Q + L+ D A ++ Q E++ V + +N RR A
Sbjct: 60 LFKGQDL-LELEPDERARAGLFLAFQYP----------EEIPGVSNLEFLRSALNARRSA 108
Query: 121 SNND-------YRIVTEALENVGMS-SMRQRQIGE-LSIGQQKRVFLARALAQKSQVIIM 171
+ +++ L +GM R + E S G++KR + + + ++ I+
Sbjct: 109 RGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAIL 168
Query: 172 DEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHN 206
DE + +D + + + L D L+ TH
Sbjct: 169 DEIDSGLDIDALKIVAEGINRLREPDRSFLIITHY 203
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 46.1 bits (110), Expect = 1e-05
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 23/188 (12%)
Query: 9 KGGLELKDISVTYPNGYCALEDVNLFI-PENTITALIGLNGAGKSTLFQAIMGLIPLDKG 67
KG +E D+S +Y N +EDV+ P T+ A++G GAGKSTL + + G
Sbjct: 332 KGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTV-AIVGPTGAGKSTLINLLQRVFDPQSG 390
Query: 68 SISIFNQTVENALKADL---IAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNND 124
I I + +A L IA + Q + F +ED + +GR A++ +
Sbjct: 391 RILIDGTDIRTVTRASLRRNIAVVFQDAGL---FNRSIEDNIRVGRPD-------ATDEE 440
Query: 125 YRIVTE---ALENVGMSSMR-QRQIGE----LSIGQQKRVFLARALAQKSQVIIMDEPFA 176
R E A + + +GE LS G+++R+ +ARAL + ++I+DE +
Sbjct: 441 MRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATS 500
Query: 177 AIDFKTER 184
A+D +TE
Sbjct: 501 ALDVETEA 508
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 45.2 bits (107), Expect = 2e-05
Identities = 46/186 (24%), Positives = 83/186 (44%), Gaps = 14/186 (7%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAY 87
L D+++ + IT + G NG GKS+L + I G++ G+I N + N K Y
Sbjct: 16 LFDLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKP-YCTY 74
Query: 88 IPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGE 147
I + + E++ W + N + A+ + + +
Sbjct: 75 IGHNLGLKLEMTVF-ENLKF--------WSEIY--NSAETLYAAIHYFKLHDLLDEKCYS 123
Query: 148 LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIF-LLKSLLNEDIMILVSTHN 206
LS G QK V +AR +A +S + ++DE + K R+++ L+ N ++L+S+H
Sbjct: 124 LSSGMQKIVAIARLIACQSDLWLLDEVETNLS-KENRDLLNNLIVMKANSGGIVLLSSHL 182
Query: 207 INSIPS 212
+SI S
Sbjct: 183 ESSIKS 188
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 45.1 bits (107), Expect = 2e-05
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 147 ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILV-STH 205
+LS G +RV +A A+A + +++I DEP A+D + ++I LL L ++ M LV TH
Sbjct: 153 QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITH 212
Query: 206 NINSIPSFCDRTIFL-KKTVLASGLTSDIF 234
++ + + I + V+ +G DIF
Sbjct: 213 DLALVAEAAHKIIVMYAGQVVETGKAHDIF 242
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 44.7 bits (106), Expect = 2e-05
Identities = 45/214 (21%), Positives = 89/214 (41%), Gaps = 42/214 (19%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQ--TVENA----- 79
L++V+L + AL G +GAGKSTL +++ D G I + ++ V+ A
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 80 ----LKADLIAY-------IPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI- 127
++ I Y IP+ +++ ++ E ++ G R A+ R
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALE----VVAEPLLERG------VPREAARARAREL 132
Query: 128 -----VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
+ E L ++ ++ S G+Q+RV +AR ++++DEP A++D
Sbjct: 133 LARLNIPERLWHLPPAT--------FSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184
Query: 183 EREMIFLLKSLLNEDIMILVSTHNINSIPSFCDR 216
+ ++ L+ ++ H+ DR
Sbjct: 185 RQVVVELIAEAKARGAALIGIFHDEEVRELVADR 218
>gnl|CDD|163508 TIGR03796, NHPM_micro_ABC1, NHPM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes an multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHPM, Nitrile Hydratase
Propeptide Microcin.
Length = 710
Score = 43.8 bits (104), Expect = 5e-05
Identities = 49/208 (23%), Positives = 89/208 (42%), Gaps = 62/208 (29%)
Query: 10 GGLELKDISVTYPNGYCAL-----EDVNLFIPENTITALIGLNGAGKSTLFQAIMGL--- 61
G +EL++I+ GY L E+ +L + AL+G +G+GKST+ + + GL
Sbjct: 476 GYVELRNITF----GYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP 531
Query: 62 ---------IPLDK-------GSISIFNQTV---ENALKADLIAY---IPQTESIDWTFP 99
IP ++ S+++ +Q + E ++ +L + IP + +
Sbjct: 532 WSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKD 591
Query: 100 ILVEDVV--MMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVF 157
+ DV+ G Y + E N+ S QRQ R+
Sbjct: 592 AAIHDVITSRPGGYDAE-------------LAEGGANL---SGGQRQ----------RLE 625
Query: 158 LARALAQKSQVIIMDEPFAAIDFKTERE 185
+ARAL + ++I+DE +A+D +TE+
Sbjct: 626 IARALVRNPSILILDEATSALDPETEKI 653
>gnl|CDD|163509 TIGR03797, NHPM_micro_ABC2, NHPM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal propeptide
cleavage domain, and an HlyD homolog (TIGR03794). In a
number of genomes, a conserved propeptide sequence with
a classic Gly-Gly motif.
Length = 686
Score = 43.0 bits (102), Expect = 8e-05
Identities = 16/39 (41%), Positives = 29/39 (74%)
Query: 146 GELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
G LS GQ++R+ +ARAL +K ++++ DE +A+D +T+
Sbjct: 587 GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQA 625
Score = 41.9 bits (99), Expect = 2e-04
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 10 GGLELKDISVTY-PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
G +E+ ++ Y P+G L+DV+L I A++G +G+GKSTL + ++G + GS
Sbjct: 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS 509
Query: 69 IS 70
+
Sbjct: 510 VF 511
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 43.2 bits (102), Expect = 8e-05
Identities = 53/219 (24%), Positives = 100/219 (45%), Gaps = 26/219 (11%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
L+L+++ L +++ + + G +G GKSTL + + LI G++ +
Sbjct: 8 LQLQNVGYL-AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL-L 65
Query: 72 FNQTVENALKADL----IAYIPQTESIDWTFPILVEDVVMMGRYKHM--NWRRVASNNDY 125
F + LK ++ ++Y QT P L D V Y ++ W+ D
Sbjct: 66 FEGEDISTLKPEIYRQQVSYCAQT-------PTLFGDTV----YDNLIFPWQIRNQQPDP 114
Query: 126 RIVTEALENVGM-SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTER 184
I + LE + ++ + I ELS G+++R+ L R L +V+++DE +A+D +
Sbjct: 115 AIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH 174
Query: 185 ---EMIFLLKSLLNEDIMILVSTHNINSIPSFCDRTIFL 220
E+I ++I +L TH+ + I + D+ I L
Sbjct: 175 NVNEIIHRYVR--EQNIAVLWVTHDKDEI-NHADKVITL 210
>gnl|CDD|178622 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 40.6 bits (95), Expect = 4e-04
Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 33/180 (18%)
Query: 16 DISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG-LIPLD-------KG 67
D S YP G +++N I ++ A++G NG GKST+ + I G L P K
Sbjct: 513 DASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKV 572
Query: 68 SISIFNQTVENALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRI 127
+++F+Q + L DL + P+L MM + + +++ ++
Sbjct: 573 RMAVFSQHHVDGL--DLSSN-----------PLL----YMMRCFPGVPEQKLRAHLGSFG 615
Query: 128 VTEALENVGMSSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMI 187
VT N+ + M LS GQ+ RV A+ +K ++++DEP +D +I
Sbjct: 616 VT---GNLALQPMYT-----LSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALI 667
Score = 29.1 bits (65), Expect = 1.2
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 138 SSMRQRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
M+ + S G + R+ LARAL + ++++DEP +D
Sbjct: 335 PEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 40.2 bits (94), Expect = 6e-04
Identities = 22/74 (29%), Positives = 38/74 (51%)
Query: 23 NGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKA 82
+ AL+D++L E + L+G+NG+GKSTL I G + G + + A+ A
Sbjct: 35 KTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISA 94
Query: 83 DLIAYIPQTESIDW 96
L + E+I++
Sbjct: 95 GLSGQLTGIENIEF 108
>gnl|CDD|128665 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 39.7 bits (92), Expect = 8e-04
Identities = 29/192 (15%), Positives = 63/192 (32%), Gaps = 57/192 (29%)
Query: 40 ITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFP 99
+ ++G G+GK+TL +A+ + G + +
Sbjct: 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE------------------------ 39
Query: 100 ILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGELSIGQQKRVFLA 159
+ + I+ + G +R R LA
Sbjct: 40 ---------------DILEEVLDQLLLIIVGGKKASGSGELRLRLA------------LA 72
Query: 160 RALAQKSQVIIMDEPFAAIDFKTEREMIF------LLKSLLNEDIMILVSTHNINSIPSF 213
A K V+I+DE + +D + E ++ LL +++ ++++T++ +
Sbjct: 73 LARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPA 132
Query: 214 CDRTIFLKKTVL 225
R F ++ VL
Sbjct: 133 LLRRRFDRRIVL 144
>gnl|CDD|178685 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 39.8 bits (93), Expect = 8e-04
Identities = 40/151 (26%), Positives = 69/151 (45%), Gaps = 18/151 (11%)
Query: 40 ITALIGLNGAGKSTLFQAIMG-----LIPLDKGSISIFNQTVENALKADLIAYIPQTESI 94
+TAL+G++GAGK+TL + G I +G I I + A + Y Q
Sbjct: 908 LTALMGVSGAGKTTLMDVLAGRKTGGYI---EGDIRISGFPKKQETFARISGYCEQN--- 961
Query: 95 DWTFP-ILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIG-----EL 148
D P + V + ++ + + + V+ V E +E V + +++ +G L
Sbjct: 962 DIHSPQVTVRESLIYSAFLRLP-KEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGL 1020
Query: 149 SIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
S Q+KR+ +A L +I MDEP + +D
Sbjct: 1021 STEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
>gnl|CDD|178750 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 38.3 bits (89), Expect = 0.002
Identities = 44/180 (24%), Positives = 80/180 (44%), Gaps = 17/180 (9%)
Query: 40 ITALIGLNGAGKSTLFQAIMGLIPLD--KGSISIFNQTV-ENALKADLIAYIPQTESIDW 96
I A++G +G+GKSTL A+ G I + G+I N+ + LK ++ Q D
Sbjct: 96 ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKR--TGFVTQD---DI 150
Query: 97 TFPILV--EDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQRQIGE-----LS 149
+P L E +V + + + + + +G++ IG +S
Sbjct: 151 LYPHLTVRETLVFCSLLRLP--KSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGIS 208
Query: 150 IGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINS 209
G++KRV +A + ++I+DEP + +D ++ L SL + I+ S H +S
Sbjct: 209 GGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS 268
>gnl|CDD|182443 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 37.4 bits (87), Expect = 0.004
Identities = 51/206 (24%), Positives = 97/206 (47%), Gaps = 17/206 (8%)
Query: 11 GLELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP----LDK 66
+EL++I++ + V+L + + AL+G +G+GKS A +G++P
Sbjct: 4 QIELRNIALQAAQPL--VHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTA 61
Query: 67 GSISIFNQTVE-NALKADLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDY 125
G + + + V AL+ IA I Q + P+ M + + D
Sbjct: 62 GRVLLDGKPVAPCALRGRKIATIMQNPRSAFN-PLHT-----MHTHARETCLALGKPADD 115
Query: 126 RIVTEALENVGMSSMR---QRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKT 182
+T ALE VG+ + + E+S G +R+ +A AL ++ II DEP +D
Sbjct: 116 ATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA 175
Query: 183 EREMIFLLKSLLNE-DIMILVSTHNI 207
+ ++ LL+S++ + + +L+ TH++
Sbjct: 176 QARILDLLESIVQKRALGMLLVTHDM 201
>gnl|CDD|173501 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 37.3 bits (86), Expect = 0.004
Identities = 27/94 (28%), Positives = 54/94 (57%), Gaps = 6/94 (6%)
Query: 147 ELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTE---REMIFLLKSLLNEDIMILVS 203
+LS GQ++R+ +ARA+ + +++I+DE +++D K+E ++ I LK NE+ + ++
Sbjct: 579 KLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKG--NENRITIII 636
Query: 204 THNINSIPSFCDRTIFLKKTVLASGLTSDIFNED 237
H +++I + + L S + DI ED
Sbjct: 637 AHRLSTI-RYANTIFVLSNRERGSTVDVDIIGED 669
Score = 34.6 bits (79), Expect = 0.029
Identities = 20/67 (29%), Positives = 42/67 (62%), Gaps = 7/67 (10%)
Query: 148 LSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLN----EDIMILVS 203
LS GQ++R+ +ARAL ++ +++++DE +++D +E+ + K++++ D I+
Sbjct: 1359 LSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEK---LIEKTIVDIKDKADKTIITI 1415
Query: 204 THNINSI 210
H I SI
Sbjct: 1416 AHRIASI 1422
Score = 29.6 bits (66), Expect = 0.99
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 4/73 (5%)
Query: 9 KGGLELKDISVTY---PNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLD 65
KG +E+ D++ Y PN +D+ TA++G G+GKST+ +M L
Sbjct: 1163 KGKIEIMDVNFRYISRPN-VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLK 1221
Query: 66 KGSISIFNQTVEN 78
+F N
Sbjct: 1222 NDHHIVFKNEHTN 1234
Score = 26.1 bits (57), Expect = 9.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 29 EDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISI 71
+D+N + E A +G +G GKST+ + I L +G I I
Sbjct: 402 KDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIII 444
>gnl|CDD|167016 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 36.3 bits (84), Expect = 0.008
Identities = 26/90 (28%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 132 LENVGMSSMR-QRQIGELSIGQQKRVFLARAL-AQKSQVI-IMDEPFAAIDFKTEREMIF 188
L ++G+ + +R + LS G+Q+R LA+ L A+ + I+DEP + + ++I
Sbjct: 460 LIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLIN 519
Query: 189 LLKSLLNEDIMILVSTHNINSIPSFCDRTI 218
++K L ++ +L+ H+ I S DR I
Sbjct: 520 VIKKLRDQGNTVLLVEHDEQMI-SLADRII 548
Score = 29.0 bits (65), Expect = 1.3
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTL 54
L+D+ + +P +T + G++G+GKS+L
Sbjct: 611 LKDLTISLPLGRLTVVTGVSGSGKSSL 637
Score = 27.9 bits (62), Expect = 3.5
Identities = 20/81 (24%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 143 RQIGELSIGQQKRVFLARAL---AQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIM 199
R + LS G+ +R+ LA L ++K + ++DEP + + +I++L+SL ++
Sbjct: 805 RPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHT 864
Query: 200 ILVSTHNINSIPSFCDRTIFL 220
+++ HN++ + D + L
Sbjct: 865 VVIIEHNMH-VVKVADYVLEL 884
Score = 26.3 bits (58), Expect = 8.3
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 14 LKDISVTYPNGY-CALEDVNLFIPENTITALIGLNGAGKSTL 54
DI++ N Y L+ ++L +P N +TA+ G + +GK +L
Sbjct: 938 PADITIK--NAYQHNLKHIDLSLPRNALTAVTGPSASGKHSL 977
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 36.1 bits (84), Expect = 0.009
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
Query: 149 SIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNE-DIMILVSTHNI 207
S G Q+R+ +AR L +++ MDEP +D + ++ LL+ L+ E + +++ TH++
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212
Query: 208 NSIPSFCDRTIFLKK-TVLASGLT 230
R + +K+ V+ SGLT
Sbjct: 213 AVARLLAHRLLVMKQGRVVESGLT 236
Score = 34.9 bits (81), Expect = 0.024
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSIS 70
L ++ ++ Y DV+ + + ++G +G+GK+TL A+ + D G +
Sbjct: 7 LSVRGLTKLYGPRK-GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
>gnl|CDD|183084 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 36.1 bits (84), Expect = 0.010
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 149 SIGQQKRVFLARALAQKSQVIIMDEPFAAID 179
S GQ++R+ +ARAL V++ DEP +A+D
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALD 186
>gnl|CDD|179887 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 34.9 bits (81), Expect = 0.022
Identities = 14/27 (51%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 38 NTITALIGLNGAGKSTLFQAIM-GLIP 63
+T L G NGAGKST A + LIP
Sbjct: 27 ELVTTLSGGNGAGKSTTMAAFVTALIP 53
>gnl|CDD|181256 PRK08154, PRK08154, anaerobic benzoate catabolism transcriptional
regulator; Reviewed.
Length = 309
Score = 34.9 bits (81), Expect = 0.022
Identities = 12/13 (92%), Positives = 12/13 (92%)
Query: 42 ALIGLNGAGKSTL 54
ALIGL GAGKSTL
Sbjct: 137 ALIGLRGAGKSTL 149
>gnl|CDD|161968 TIGR00630, uvra, excinuclease ABC, A subunit. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University).
Length = 924
Score = 33.8 bits (78), Expect = 0.048
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTL 54
L+++ + IP T + G++G+GKSTL
Sbjct: 623 LKNITVSIPLGLFTCITGVSGSGKSTL 649
Score = 32.7 bits (75), Expect = 0.10
Identities = 23/85 (27%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 130 EALENVGMSSMRQRQ-IGELSIGQQKRVFLARALAQKSQ---VIIMDEPFAAIDFKTERE 185
+ L +VG+ ++ Q LS G+ +R+ LA+ L+++S + I+DEP + F ++
Sbjct: 810 QTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKK 869
Query: 186 MIFLLKSLLNEDIMILVSTHNINSI 210
++ +L+ L+++ ++V HN++ I
Sbjct: 870 LLEVLQRLVDQGNTVVVIEHNLDVI 894
Score = 30.8 bits (70), Expect = 0.37
Identities = 10/27 (37%), Positives = 21/27 (77%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTL 54
L+++++ IP + + + GL+G+GKS+L
Sbjct: 12 LKNIDVEIPRDKLVVITGLSGSGKSSL 38
>gnl|CDD|182605 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 32.8 bits (75), Expect = 0.090
Identities = 47/192 (24%), Positives = 80/192 (41%), Gaps = 51/192 (26%)
Query: 43 LIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESIDW------ 96
L+G NG GKSTL + I D GS + P + W
Sbjct: 32 LVGKNGCGKSTLLALLKNEISADGGSYT-----------------FPGNWQLAWVNQETP 74
Query: 97 TFPILVEDVVMMG--RYKHMNWRRVASN--ND----------------YRIVTEA---LE 133
P + V+ G Y+ + + +N ND + I + A L
Sbjct: 75 ALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLH 134
Query: 134 NVGMSSMR-QRQIGELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKS 192
+G S+ + +R + + S G + R+ LA+AL +S ++++DEP +D +I+L K
Sbjct: 135 GLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA---VIWLEKW 191
Query: 193 LLN-EDIMILVS 203
L + + +IL+S
Sbjct: 192 LKSYQGTLILIS 203
Score = 29.4 bits (66), Expect = 1.2
Identities = 48/194 (24%), Positives = 86/194 (44%), Gaps = 40/194 (20%)
Query: 31 VNLFIPENTITALIGLNGAGKSTL-------FQAIMGLIPLDKG-SISIFNQTVENALKA 82
+NL +P + I L+G NGAGKSTL + G I L KG + F Q L+A
Sbjct: 333 LNL-VPGSRI-GLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRA 390
Query: 83 DLIAYIPQTESIDWTFPILVEDVVMMGRYKHMNWRRVASNNDYRIVTEALENVGMSSMRQ 142
D ES P+ +H+ R+A + + + L G +
Sbjct: 391 D--------ES-----PL-----------QHLA--RLAPQELEQKLRDYLGGFGFQGDKV 424
Query: 143 RQI-GELSIGQQKRVFLARALAQKSQVIIMDEPFAAIDFKTEREMIFLLKSLLNEDIMIL 201
+ S G++ R+ LA + Q+ ++++DEP +D + L ++L++ + ++
Sbjct: 425 TEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQA---LTEALIDFEGALV 481
Query: 202 VSTHNINSIPSFCD 215
V +H+ + + S D
Sbjct: 482 VVSHDRHLLRSTTD 495
>gnl|CDD|179346 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 31.4 bits (72), Expect = 0.24
Identities = 11/19 (57%), Positives = 15/19 (78%)
Query: 42 ALIGLNGAGKSTLFQAIMG 60
AL+G +G GKSTL A++G
Sbjct: 199 ALLGSSGVGKSTLVNALLG 217
>gnl|CDD|184491 PRK14079, recF, recombination protein F; Provisional.
Length = 349
Score = 31.3 bits (71), Expect = 0.30
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
Query: 32 NLFIPENT----ITALIGLNGAGKSTLFQAIM----GLIPLDKGSISI-FNQTVENALKA 82
NL P +TA++G N AGK+ L +AI G +P + + + F + E + A
Sbjct: 13 NLAPPTLAFPPGVTAVVGENAAGKTNLLEAIYLALTGELPNGRLADLVRFGEG-EAWVHA 71
Query: 83 DL 84
++
Sbjct: 72 EV 73
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University).
Length = 1042
Score = 31.1 bits (70), Expect = 0.34
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 29 EDVNLFIPENTITALIGLNGAGKSTLFQAI 58
F I + G GAGK+TL AI
Sbjct: 17 THTIDFTALGPIFLICGKTGAGKTTLLDAI 46
>gnl|CDD|178984 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 30.0 bits (69), Expect = 0.65
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTL 54
L++++L IP + + GL+G+GKS+L
Sbjct: 16 LKNIDLDIPRDKLVVFTGLSGSGKSSL 42
Score = 30.0 bits (69), Expect = 0.68
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 28 LEDVNLFIPENTITALIGLNGAGKSTL 54
L++V++ IP T + G++G+GKSTL
Sbjct: 625 LKNVDVEIPLGKFTCVTGVSGSGKSTL 651
>gnl|CDD|163544 TIGR03832, Tyr_2_3_mutase, tyrosine 2,3-aminomutase. Members of
this protein family are tyrosine 2,3-aminomutase. It is
variable from member to member as to whether the
(R)-beta-Tyr or (S)-beta-Tyr is the preferred product
from L-Tyr. This enzyme tends to occur in secondary
metabolite biosynthesis systems, as in the production of
chondramides in Chondromyces crocatus.
Length = 507
Score = 30.2 bits (68), Expect = 0.65
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 103 EDVVMMGRYKHMNWRRVASNNDYRIVTEAL 132
+DVV MG N RRV SNN+ + E L
Sbjct: 428 QDVVSMGLIAARNARRVLSNNNKILAVELL 457
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 29.8 bits (67), Expect = 0.75
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 12 LELKDISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMG 60
L +KD+ V+ L +NL + + A++G NG+GKSTL + G
Sbjct: 2 LSIKDLHVSV-EDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAG 49
>gnl|CDD|183407 PRK12289, PRK12289, GTPase RsgA; Reviewed.
Length = 352
Score = 29.6 bits (67), Expect = 0.95
Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 17 ISVTYPNGYCALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIP 63
ISV G AL + L N IT + G +G GKS+L I LIP
Sbjct: 155 ISVETGIGLEALLE-QL---RNKITVVAGPSGVGKSSL---INRLIP 194
>gnl|CDD|179675 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 29.3 bits (66), Expect = 1.3
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 40 ITALIGLNGAGKSTLFQAIMGLIPLDKGS 68
I +IG NG+GKS++ +AI+ + GS
Sbjct: 25 INLIIGQNGSGKSSILEAILVGLYWGHGS 53
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 29.2 bits (66), Expect = 1.3
Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 37 ENTITALIGLNGAGKSTLFQA-IMGL 61
E+ +T + G+NG+GKS+L +A L
Sbjct: 22 EDGVTVIHGVNGSGKSSLLEACFFAL 47
>gnl|CDD|178835 PRK00064, recF, recombination protein F; Reviewed.
Length = 361
Score = 29.0 bits (66), Expect = 1.4
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 36 PENTITALIGLNGAGKSTLFQAI 58
+ L+G NG GK+ L +AI
Sbjct: 21 LSPGVNVLVGENGQGKTNLLEAI 43
>gnl|CDD|131580 TIGR02528, EutP, ethanolamine utilization protein, EutP. This
protein is found within operons which code for
polyhedral organelles containing the enzyme
ethanolamine ammonia lyase. The function of this gene
is unknown, although the presence of an N-terminal
GxxGxGK motif implies a GTP-binding site.
Length = 142
Score = 28.6 bits (64), Expect = 1.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 42 ALIGLNGAGKSTLFQAIMGL 61
IG G GK+TL QA+ G
Sbjct: 4 MFIGSVGCGKTTLTQALQGE 23
>gnl|CDD|163021 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 28.5 bits (64), Expect = 2.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 45 GLNGAGKSTLFQAIMGLIPLDKGSISI 71
G G+GK+T ++++ IP D+ I+I
Sbjct: 151 GGTGSGKTTFLKSLVDEIPKDERIITI 177
>gnl|CDD|177372 PHA02533, 17, large terminase protein; Provisional.
Length = 534
Score = 28.1 bits (63), Expect = 2.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 133 ENVGMSSMRQRQIGELSIGQQKRV 156
ENV SMR + +L + Q KRV
Sbjct: 397 ENVICDSMRGQGFSDLGMKQTKRV 420
>gnl|CDD|184074 PRK13477, PRK13477, bifunctional pantoate ligase/cytidylate kinase;
Provisional.
Length = 512
Score = 27.9 bits (63), Expect = 2.7
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 40 ITALIGLNGAGKST---LFQAIMGLIPLDKG 67
I A+ G GAGKST +GL+ LD G
Sbjct: 286 IIAIDGPAGAGKSTVTRAVAKKLGLLYLDTG 316
>gnl|CDD|185364 PRK15467, PRK15467, ethanolamine utilization protein EutP;
Provisional.
Length = 158
Score = 28.0 bits (62), Expect = 2.7
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 42 ALIGLNGAGKSTLFQAIMG 60
A +G GAGK+TLF A+ G
Sbjct: 5 AFVGAVGAGKTTLFNALQG 23
>gnl|CDD|163162 TIGR03156, GTP_HflX, GTP-binding protein HflX. This protein family
is one of a number of homologous small, well-conserved
GTP-binding proteins with pleiotropic effects. Bacterial
members are designated HflX, following the naming
convention in Escherichia coli where HflX is encoded
immediately downstream of the RNA chaperone Hfq, and
immediately upstream of HflKC, a membrane-associated
protease pair with an important housekeeping function.
Over large numbers of other bacterial genomes, the
pairing with hfq is more significant than with hflK and
hlfC. The gene from Homo sapiens in this family has been
named PGPL (pseudoautosomal GTP-binding protein-like).
Length = 351
Score = 27.8 bits (63), Expect = 2.9
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 42 ALIGLNGAGKSTLFQAI 58
AL+G AGKSTLF A+
Sbjct: 193 ALVGYTNAGKSTLFNAL 209
>gnl|CDD|178949 PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.
Length = 278
Score = 27.9 bits (63), Expect = 3.0
Identities = 17/72 (23%), Positives = 29/72 (40%), Gaps = 6/72 (8%)
Query: 27 ALEDVNLFIPENTITALIGLNGAGKSTLFQAIMGLIPLDKGSISIFNQTVENALKADLIA 86
ALE+ + ++G GA ++ I+ L+ L I+I N+TVE A +L
Sbjct: 112 ALEERLGVDLKGKRILILGAGGAARA----VILPLLDLGVAEITIVNRTVERA--EELAK 165
Query: 87 YIPQTESIDWTF 98
+
Sbjct: 166 LFGALGKAELDL 177
>gnl|CDD|177394 PHA02562, 46, endonuclease subunit; Provisional.
Length = 562
Score = 27.7 bits (62), Expect = 3.4
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 41 TALIGLNGAGKSTLFQAI 58
T + G NGAGKST+ +A+
Sbjct: 30 TLITGKNGAGKSTMLEAL 47
>gnl|CDD|180621 PRK06556, PRK06556, vitamin B12-dependent ribonucleotide reductase;
Validated.
Length = 953
Score = 27.6 bits (62), Expect = 3.5
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 9/37 (24%)
Query: 67 GSISIFNQTVENALKA---------DLIAYIPQTESI 94
GS+ I NQTV ALK ++ YI + I
Sbjct: 573 GSMKIVNQTVPRALKKLGYSEEQIEAIVEYIAEHGHI 609
>gnl|CDD|183300 PRK11756, PRK11756, exonuclease III; Provisional.
Length = 268
Score = 27.6 bits (62), Expect = 3.8
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 12/38 (31%)
Query: 58 IMGLIPLDKGSISIFNQTVENALKADLIAYIPQTESID 95
IM IP G++++ N Y PQ ES D
Sbjct: 92 IMATIPTPNGNLTVIN------------GYFPQGESRD 117
>gnl|CDD|178861 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 27.5 bits (62), Expect = 3.9
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 40 ITALIGLNGAGKSTLFQAI 58
+T L G +G GKSTL A+
Sbjct: 166 VTVLAGQSGVGKSTLLNAL 184
>gnl|CDD|180124 PRK05537, PRK05537, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Validated.
Length = 568
Score = 26.9 bits (60), Expect = 5.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 43 LIGLNGAGKSTLFQAIM 59
GL+GAGKST+ +A+M
Sbjct: 397 FTGLSGAGKSTIAKALM 413
>gnl|CDD|162218 TIGR01134, purF, amidophosphoribosyltransferase. Alternate name:
glutamine phosphoribosylpyrophosphate (PRPP)
amidotransferase.
Length = 442
Score = 27.2 bits (61), Expect = 5.4
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 210 IPSFCDRTIFLKKTVLASGLTSDIFNEDNIQKTFG 244
I I K +GL SD+F+E ++++ G
Sbjct: 34 IAVSDGNKIRTHK---GNGLVSDVFDERHLERLKG 65
>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era. Era is an essential
GTPase in Escherichia coli and many other bacteria. It
plays a role in ribosome biogenesis. Few bacteria lack
this protein.
Length = 270
Score = 27.0 bits (60), Expect = 5.5
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 5/55 (9%)
Query: 42 ALIGLNGAGKSTLFQAIMGLIPLDKGSI-SIFNQTVENALKADLIAYIPQTESID 95
A++G GKSTL + G K SI S QT N + Q ID
Sbjct: 4 AILGRPNVGKSTLLNQLHG----QKISITSPKAQTTRNRISGIHTTGASQIIFID 54
>gnl|CDD|181172 PRK07933, PRK07933, thymidylate kinase; Validated.
Length = 213
Score = 26.9 bits (60), Expect = 5.6
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 40 ITALIGLNGAGKSTLFQAI 58
+ A+ G++GAGK TL +A+
Sbjct: 2 LIAIEGVDGAGKRTLTEAL 20
>gnl|CDD|163225 TIGR03348, VI_IcmF, type VI secretion protein IcmF. Members of
this protein family are IcmF homologs and tend to be
associated with type VI secretion systems.
Length = 1169
Score = 26.9 bits (60), Expect = 5.9
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 20/73 (27%)
Query: 43 LIGLNGAGKSTLFQAIMGL-IPLDKGSISIFNQTVENALKADLIAYIPQTESIDWTFPIL 101
+IG G+GK+TL Q GL PL L A + + T + DW F
Sbjct: 116 VIGPPGSGKTTLLQN-SGLKFPLA------------ERLGAAALRGVGGTRNCDWWF--- 159
Query: 102 VEDVVMM---GRY 111
++ V++ GRY
Sbjct: 160 TDEAVLIDTAGRY 172
>gnl|CDD|152563 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins
in this family are typically between 943 to 1234 amino
acids in length. There are two conserved sequence
motifs: GKT and YLP.
Length = 1192
Score = 26.9 bits (60), Expect = 6.0
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 41 TALIGLNGAGKSTLFQAIMGLIPL 64
T + G N AGK+TL LIPL
Sbjct: 20 TNICGTNAAGKTTL----QRLIPL 39
>gnl|CDD|163179 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD.
This model describes the DndB protein encoded by an
operon associated with a sulfur-containing modification
to DNA. The operon is sporadically distributed in
bacteria, much like some restriction enzyme operons.
DndD is described as a putative ATPase. The small
number of examples known so far include species from
among the Firmicutes, Actinomycetes, Proteobacteria,
and Cyanobacteria.
Length = 650
Score = 27.0 bits (60), Expect = 6.1
Identities = 11/14 (78%), Positives = 12/14 (85%)
Query: 45 GLNGAGKSTLFQAI 58
GLNGAGK+TL AI
Sbjct: 35 GLNGAGKTTLLDAI 48
>gnl|CDD|181981 PRK09601, PRK09601, GTP-binding protein YchF; Reviewed.
Length = 364
Score = 27.0 bits (61), Expect = 6.6
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 44 IGLNGAGKSTLFQAI 58
+GL GKSTLF A+
Sbjct: 8 VGLPNVGKSTLFNAL 22
>gnl|CDD|163008 TIGR02768, TraA_Ti, Ti-type conjugative transfer relaxase TraA.
This protein contains domains distinctive of a single
strand exonuclease (N-terminus, MobA/MobL, pfam03389) as
well as a helicase domain (central region, homologous to
the corresponding region of the F-type relaxase TraI,
TIGR02760). This protein likely fills the same role as
TraI(F), nicking (at the oriT site) and unwinding the
coiled plasmid prior to conjugative transfer.
Length = 744
Score = 26.7 bits (59), Expect = 7.6
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 40 ITALIGLNGAGKSTLFQA 57
I ++G G GKST+ +A
Sbjct: 370 IAVVVGRAGTGKSTMLKA 387
>gnl|CDD|168091 PRK05541, PRK05541, adenylylsulfate kinase; Provisional.
Length = 176
Score = 26.6 bits (59), Expect = 8.7
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 34 FIPENTITALIGLNGAGKSTLFQAI 58
P + + GL G+GK+T+ +A+
Sbjct: 3 MKPNGYVIWITGLAGSGKTTIAKAL 27
>gnl|CDD|161817 TIGR00321, dhys, deoxyhypusine synthase. This family of apparent
orthologs has an unusual UPGMA difference tree, in which
the members from the archaea M. jannaschii and P.
horikoshii cluster with the known eukaryotic
deoxyhypusine synthases. Separated by a fairly deep
branch, although still strongly related, is a small
cluster of proteins from Methanobacterium
thermoautotrophicum and Archeoglobus fulgidus, the
latter of which has two.
Length = 301
Score = 26.2 bits (58), Expect = 8.8
Identities = 10/45 (22%), Positives = 14/45 (31%)
Query: 170 IMDEPFAAIDFKTEREMIFLLKSLLNEDIMILVSTHNINSIPSFC 214
I E T E I + +N+ + IP FC
Sbjct: 135 IFSEMLGEQPIITPSEFIDEIGKRINDKRSSIRYAAYKRKIPIFC 179
>gnl|CDD|183417 PRK12299, obgE, GTPase CgtA; Reviewed.
Length = 335
Score = 26.2 bits (59), Expect = 8.9
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 43 LIGLNGAGKSTLFQAI 58
L+GL AGKSTL A+
Sbjct: 163 LVGLPNAGKSTLISAV 178
>gnl|CDD|162739 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing
and segregating chromosomes for partition. SMC proteins
are found in bacteria, archaea, and eukaryotes. This
family represents the SMC protein of most bacteria. The
smc gene is often associated with scpB (TIGR00281) and
scpA genes, where scp stands for segregation and
condensation protein. SMC was shown (in Caulobacter
crescentus) to be induced early in S phase but present
and bound to DNA throughout the cell cycle.
Length = 1179
Score = 26.2 bits (58), Expect = 9.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 40 ITALIGLNGAGKSTLFQAIM 59
IT ++G NG GKS + AI
Sbjct: 25 ITGIVGPNGCGKSNIVDAIR 44
>gnl|CDD|181743 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 26.4 bits (59), Expect = 9.4
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 39 TITALIGLNGAGKSTL 54
TI + G GAGKSTL
Sbjct: 34 TIVGIAGPPGAGKSTL 49
>gnl|CDD|151168 pfam10662, PduV-EutP, Ethanolamine utilisation - propanediol
utilisation. Members of this family function in
ethanolamine and propanediol degradation pathways,
however the exact roles of these proteins is poorly
understood.
Length = 143
Score = 26.4 bits (59), Expect = 9.5
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 43 LIGLNGAGKSTLFQAIMGL 61
LIG +G GK+TL QA+ G
Sbjct: 6 LIGRSGCGKTTLTQALNGE 24
>gnl|CDD|182330 PRK10246, PRK10246, exonuclease subunit SbcC; Provisional.
Length = 1047
Score = 26.3 bits (58), Expect = 9.9
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 38 NTITALIGLNGAGKSTLFQAI 58
N + A+ G GAGK+TL AI
Sbjct: 30 NGLFAITGPTGAGKTTLLDAI 50
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.133 0.372
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 4,330,306
Number of extensions: 272700
Number of successful extensions: 1171
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1029
Number of HSP's successfully gapped: 424
Length of query: 280
Length of database: 5,994,473
Length adjustment: 92
Effective length of query: 188
Effective length of database: 4,006,537
Effective search space: 753228956
Effective search space used: 753228956
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)