HHsearch alignment for GI: 254780539 and conserved domain: COG1172

>COG1172 AraH Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].
Probab=96.46  E-value=0.05  Score=29.64  Aligned_cols=182  Identities=16%  Similarity=0.107  Sum_probs=83.9

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHH-CCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf             99863102465115689999999999999975211022-2421121-1531002700013578876799999-9998887
Q gi|254780539|r   79 IMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSPSA-VYVENIF-LGNTLSMSRSDTIQVLIITFSVACI-VYMKWKD  155 (273)
Q Consensus        79 li~~l~~~~~~~~d~~igi~~~~~~algvllis~~~~~-~~l~~~L-fG~il~i~~~di~~~~~~~~i~~~~-~~~~~r~  155 (273)
T Consensus       108 iNG~lv~~~~ip~fI~TLgt~~i~rGl~l~~t~G~~i~~~~~~~~~g~~~~~GiP~~~~i~i~~~~~~~~~l~rT~~Gr~  187 (316)
T COG1172         108 INGLLVARLRIPPFIATLGTMFILRGLALLLTGGRPISLPDAFAWLGSGRILGIPVPVIIFIVVAALFWLLLRRTRFGRS  187 (316)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf             89899998178829998889999999998870992677978999843585428709999999999999999845601478


Q ss_pred             HHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHC--------C
Q ss_conf             888724688998717871046779999999999999999899999999----------9999999985208--------9
Q gi|254780539|r  156 FVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIAT----------VITPGATAKLMSK--------S  217 (273)
Q Consensus       156 l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~al----------lv~Paa~A~~~~~--------~  217 (273)
T Consensus       188 iyAvG~N~~AA~~sGI~v~rv~i~~y~isG~lAaia----Gi~~~~~~~s~~~~~g~~~eL~aIAAvViGGtsL~GG~Gs  263 (316)
T COG1172         188 IYAVGGNEEAARLSGIPVRRVKIAAYVLSGLLAALA----GILLAARLGSAQPNAGVGYELDAIAAVVIGGTSLAGGRGS  263 (316)
T ss_pred             EEEECCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             989789899999849881224424689999999999----9999999658485645454888889754177476688404


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             8999999999999999999999999579818999999999999999980424
Q gi|254780539|r  218 FGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSKQ  269 (273)
Q Consensus       218 ~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~  269 (273)
T Consensus       264 v~Gt~iGalil~~l~ngl-----~l~~v~~~~q~~i~G~iil~av~~~~~~~  310 (316)
T COG1172         264 VIGTLLGALILGVLQNGL-----NLLGVSSYWQQIIKGLIILLAVALDGRRR  310 (316)
T ss_pred             HHHHHHHHHHHHHHHHHH-----HHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             599999999999999889-----99299889999999999999999999998