HHsearch alignment for GI: 254780539 and conserved domain: COG1172
>COG1172 AraH Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].
Probab=96.46 E-value=0.05 Score=29.64 Aligned_cols=182 Identities=16% Similarity=0.107 Sum_probs=83.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHH-CCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 99863102465115689999999999999975211022-2421121-1531002700013578876799999-9998887
Q gi|254780539|r 79 IMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSPSA-VYVENIF-LGNTLSMSRSDTIQVLIITFSVACI-VYMKWKD 155 (273)
Q Consensus 79 li~~l~~~~~~~~d~~igi~~~~~~algvllis~~~~~-~~l~~~L-fG~il~i~~~di~~~~~~~~i~~~~-~~~~~r~ 155 (273)
T Consensus 108 iNG~lv~~~~ip~fI~TLgt~~i~rGl~l~~t~G~~i~~~~~~~~~g~~~~~GiP~~~~i~i~~~~~~~~~l~rT~~Gr~ 187 (316)
T COG1172 108 INGLLVARLRIPPFIATLGTMFILRGLALLLTGGRPISLPDAFAWLGSGRILGIPVPVIIFIVVAALFWLLLRRTRFGRS 187 (316)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 89899998178829998889999999998870992677978999843585428709999999999999999845601478
Q ss_pred HHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHC--------C
Q ss_conf 888724688998717871046779999999999999999899999999----------9999999985208--------9
Q gi|254780539|r 156 FVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIAT----------VITPGATAKLMSK--------S 217 (273)
Q Consensus 156 l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~al----------lv~Paa~A~~~~~--------~ 217 (273)
T Consensus 188 iyAvG~N~~AA~~sGI~v~rv~i~~y~isG~lAaia----Gi~~~~~~~s~~~~~g~~~eL~aIAAvViGGtsL~GG~Gs 263 (316)
T COG1172 188 IYAVGGNEEAARLSGIPVRRVKIAAYVLSGLLAALA----GILLAARLGSAQPNAGVGYELDAIAAVVIGGTSLAGGRGS 263 (316)
T ss_pred EEEECCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 989789899999849881224424689999999999----9999999658485645454888889754177476688404
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999999999999999999999999579818999999999999999980424
Q gi|254780539|r 218 FGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSKQ 269 (273)
Q Consensus 218 ~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~ 269 (273)
T Consensus 264 v~Gt~iGalil~~l~ngl-----~l~~v~~~~q~~i~G~iil~av~~~~~~~ 310 (316)
T COG1172 264 VIGTLLGALILGVLQNGL-----NLLGVSSYWQQIIKGLIILLAVALDGRRR 310 (316)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 599999999999999889-----99299889999999999999999999998