HHsearch alignment for GI: 254780539 and conserved domain: COG4120
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only].
Probab=97.17 E-value=0.013 Score=32.89 Aligned_cols=243 Identities=13% Similarity=0.107 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HCCCCHHH---HHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999987--77999999658996324899999-9999998---31441456---89999999999998631024
Q gi|254780539|r 17 AIWMSTLIGCVCG--LLSAYLILKGWSSIGNGISHAIF-PGIVVCH---RLNIPLSV---GATISGMLATGIMVKIKETT 87 (273)
Q Consensus 17 all~~~li~~~~~--~lG~~~v~r~~s~~~~alsH~~l-~Giala~---~l~~~~~~---ga~~~~ll~~~li~~l~~~~ 87 (273)
T Consensus 5 ~l~~aleqgLi~~~v~LGvyisFRiLnFPD-LTvdGsfpLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k~ 83 (293)
T COG4120 5 ILIGALEQGLIFAFVALGVYISFRILNFPD-LTVDGSFPLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVKF 83 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHEEEECCCCC-CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999998999999997861355406887-5315751050999999998168779999999998789899999999722
Q ss_pred CCCHHHHHHHH-HHHHHHHHHHHHHHHC----CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q ss_conf 65115689999-9999999999752110----2224211211531002700013578876799999999888-----788
Q gi|254780539|r 88 KLREDVAIAVV-YIIFYSFAMFMLSLSP----SAVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWK-----DFV 157 (273)
Q Consensus 88 ~~~~d~~igi~-~~~~~algvllis~~~----~~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r-----~l~ 157 (273)
T Consensus 84 kI~~-LLAgIL~M~alySVNLrIMgrpNl~ll~~~ti~~~l~~~~~~~~~~~pli~~vlvii~~~~v~~fl~t~~Glalr 162 (293)
T COG4120 84 KILT-LLAGILTMIALYSVNLRIMGRPNLPLLGEDTIFTPLPFDGLLDYLLRPLILVVLVIIAKLLVIRFLKTDLGLALR 162 (293)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 2877-999999999999888998558996536898633535545662257787999999999999999997345362210
Q ss_pred HHHCCHHHHHHCCCCCHHHHHHHHHH----HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----CCHH
Q ss_conf 87246889987178710467799999----999999999998---------99999999999999998520-----8989
Q gi|254780539|r 158 LLFFDERHAHSVGINVKLLKMLFFSL----LTITIVIGFQTV---------GILLVIATVITPGATAKLMS-----KSFG 219 (273)
Q Consensus 158 ~~sfD~~~A~~~Gi~v~~~~~l~l~l----~al~v~~~v~~v---------G~llv~allv~Paa~A~~~~-----~~~~ 219 (273)
T Consensus 163 AtG~N~~Ma~a~Gi~t~~~~~~Gl~lSNalvAl~GAL~AQ~~GfADVsmGiG~iV-v------GLAavIIGe~i~~~r~~ 235 (293)
T COG4120 163 ATGDNPDMARAQGINTERYTILGLALSNALVALAGALFAQTNGFADVSMGIGTIV-V------GLAAVIIGETIFGSRRL 235 (293)
T ss_pred CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHH-H------HHHHHHHHHHHHHHHHH
T ss_conf 1279877999839872568999899988899985668887436530025744245-4------56799977988745589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999999579818999999999999999980424
Q gi|254780539|r 220 TYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSKQ 269 (273)
Q Consensus 220 ~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~ 269 (273)
T Consensus 236 ~~~lla~viGsI~Yr~~i~~~L~~Gl~~sdL-klitallv~i~L~lp~~k 284 (293)
T COG4120 236 LLALLAVVIGSILYRFAIALALSSGLDASDL-KLITALLVAIALILPKLK 284 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999859986777-899999999999708888