HHsearch alignment for GI: 254780539 and conserved domain: cd06581

>cd06581 TM_PBP1_LivM_like Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo
Probab=97.44  E-value=0.0065  Score=34.65  Aligned_cols=132  Identities=17%  Similarity=0.135  Sum_probs=76.0

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-H---HHHHHHH
Q ss_conf             02700013578876799999999-----8887888724688998717871046779999999999999-9---9989999
Q gi|254780539|r  129 SMSRSDTIQVLIITFSVACIVYM-----KWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIG-F---QTVGILL  199 (273)
Q Consensus       129 ~i~~~di~~~~~~~~i~~~~~~~-----~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~-v---~~vG~ll  199 (273)
T Consensus       119 ~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~irAvg~n~~aA~~~GInv~rv~~~~f~isg~laglaG~l~~~~~~~~~  198 (268)
T cd06581         119 SSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVS  198 (268)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf             32279999999999999999999986136635887532859999779689999999999999999999999998716618


Q ss_pred             H---HHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf             9---99999999999852--089899999999999999999999999957981899999999999999998042
Q gi|254780539|r  200 V---IATVITPGATAKLM--SKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSK  268 (273)
Q Consensus       200 v---~allv~Paa~A~~~--~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~  268 (273)
T Consensus       199 p~~~g~~~~~~~~~~~vlGG~gsi~Ga~iG~lilg~~~~~~~~~~~~~~--------~~~~~~ili~vll~rP~  264 (268)
T cd06581         199 PESFGFALSIELLLMVVLGGLGSLLGPVLGAALLVLLPELLRSLGPGLR--------LLVFGLLLILVVLFLPR  264 (268)
T ss_pred             HHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCCC
T ss_conf             0130189999999886154887659999999999999999998607899--------99999999999998599