Query gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 273
No_of_seqs 134 out of 2518
Neff 7.1
Searched_HMMs 39220
Date Sun May 29 22:48:22 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780539.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1108 ZnuB ABC-type Mn2+/Zn2 100.0 0 0 445.8 32.9 272 1-272 1-273 (274)
2 pfam00950 ABC-3 ABC 3 transpor 100.0 0 0 423.0 32.8 257 10-266 1-258 (258)
3 PRK09543 znuB high-affinity zi 100.0 0 0 419.3 32.5 257 11-267 2-259 (261)
4 cd06550 TM_ABC_iron-siderophor 100.0 3.9E-34 1E-38 211.7 26.0 246 15-261 2-259 (261)
5 PRK10440 iron-enterobactin tra 99.9 1.1E-22 2.8E-27 146.7 26.9 246 19-271 64-330 (330)
6 PRK10577 iron-hydroxamate tran 99.9 3.1E-22 8E-27 144.2 26.6 244 19-268 401-665 (666)
7 PRK10441 iron-enterobactin tra 99.9 5.2E-22 1.3E-26 142.9 24.9 247 19-271 65-333 (335)
8 PRK03784 vtamin B12-transporte 99.9 1.5E-21 3.8E-26 140.3 25.6 247 18-271 61-330 (330)
9 PRK09777 fecD iron-dicitrate t 99.9 8.9E-22 2.3E-26 141.6 24.2 245 18-268 55-318 (318)
10 PRK09535 btuC corrinoid ABC tr 99.9 8E-22 2E-26 141.9 23.2 244 19-268 100-362 (366)
11 PRK10577 iron-hydroxamate tran 99.9 5.3E-21 1.3E-25 137.2 25.9 251 12-269 61-333 (666)
12 COG0609 FepD ABC-type Fe3+-sid 99.9 1.4E-20 3.6E-25 134.8 25.9 261 9-271 53-333 (334)
13 pfam01032 FecCD FecCD transpor 99.9 5.5E-20 1.4E-24 131.5 26.3 240 19-264 47-310 (312)
14 PRK11228 fecC iron-dicitrate t 99.9 5.2E-20 1.3E-24 131.6 23.8 240 19-264 56-319 (323)
15 COG4779 FepG ABC-type enteroba 99.5 7.6E-13 1.9E-17 90.9 10.8 205 64-271 132-346 (346)
16 COG4606 CeuB ABC-type enteroch 99.4 1.2E-11 3E-16 84.2 10.7 248 20-270 55-319 (321)
17 COG4605 CeuC ABC-type enteroch 98.9 6.4E-08 1.6E-12 63.0 13.1 178 89-269 130-315 (316)
18 COG4139 BtuC ABC-type cobalami 98.8 1.2E-07 3E-12 61.5 12.3 223 17-250 59-308 (326)
19 TIGR03622 urea_t_UrtB_arc urea 97.9 0.0013 3.3E-08 38.6 22.4 129 129-268 129-273 (283)
20 cd06582 TM_PBP1_LivH_like Tran 97.5 0.0058 1.5E-07 34.9 17.8 129 130-269 126-270 (272)
21 cd06574 TM_PBP1_branched-chain 97.5 0.0059 1.5E-07 34.9 16.1 38 153-190 146-183 (266)
22 cd06581 TM_PBP1_LivM_like Tran 97.4 0.0065 1.7E-07 34.7 19.5 132 129-268 119-264 (268)
23 cd06579 TM_PBP1_transp_AraH_li 97.4 0.007 1.8E-07 34.5 14.1 38 153-190 142-179 (263)
24 PRK10740 branched-chain amino 97.2 0.012 3.1E-07 33.1 28.0 134 128-268 151-297 (308)
25 COG4120 ABC-type uncharacteriz 97.2 0.013 3.4E-07 32.9 20.9 243 17-269 5-284 (293)
26 pfam02653 BPD_transp_2 Branche 97.1 0.018 4.5E-07 32.2 17.7 193 46-248 29-253 (267)
27 PRK09699 D-allose transporter 97.0 0.016 4E-07 32.5 10.1 72 119-191 164-237 (325)
28 COG1172 AraH Ribose/xylose/ara 96.5 0.05 1.3E-06 29.6 9.8 182 79-269 108-310 (316)
29 PRK11301 livM leucine/isoleuci 96.3 0.061 1.6E-06 29.1 15.8 110 152-269 286-403 (416)
30 PRK11285 araH L-arabinose tran 96.0 0.089 2.3E-06 28.2 10.3 71 119-190 167-239 (327)
31 COG0559 LivH Branched-chain am 95.7 0.13 3.2E-06 27.4 28.5 80 112-191 120-209 (297)
32 cd06580 TM_PBP1_transp_TpRbsC_ 95.2 0.18 4.6E-06 26.5 21.8 99 153-255 118-227 (234)
33 TIGR03409 urea_trans_UrtB urea 95.1 0.2 5E-06 26.2 28.0 130 128-268 138-283 (291)
34 PRK09478 mglC beta-methylgalac 94.6 0.27 6.8E-06 25.5 12.4 40 152-191 206-245 (336)
35 PRK09512 rbsC ribose ABC trans 94.5 0.27 7E-06 25.4 13.8 136 124-269 166-320 (321)
36 TIGR03408 urea_trans_UrtC urea 94.4 0.29 7.5E-06 25.3 21.4 105 153-269 192-309 (313)
37 COG4603 ABC-type uncharacteriz 92.7 0.59 1.5E-05 23.5 18.5 202 67-270 120-345 (356)
38 COG5006 rhtA Threonine/homoser 88.0 1.6 4E-05 21.1 8.0 40 199-238 185-225 (292)
39 PRK11618 inner membrane ABC tr 86.6 1.9 4.9E-05 20.6 16.0 40 152-191 185-224 (317)
40 COG4177 LivM ABC-type branched 84.9 2.3 6E-05 20.2 18.9 109 153-269 183-303 (314)
41 COG1079 Uncharacterized ABC-ty 83.3 2.7 7E-05 19.8 19.3 204 24-236 19-257 (304)
42 PRK10532 threonine and homoser 53.1 14 0.00036 15.8 9.3 21 220-240 206-226 (293)
43 pfam02038 ATP1G1_PLM_MAT8 ATP1 49.2 16 0.00041 15.4 2.8 32 7-39 6-37 (51)
44 TIGR00907 2A0304 amino acid pe 46.8 18 0.00045 15.2 5.4 146 125-270 307-489 (494)
45 PRK09395 actP acetate permease 39.5 23 0.00059 14.5 16.3 188 37-226 75-303 (551)
46 COG4214 XylH ABC-type xylose t 39.3 23 0.00059 14.5 14.2 39 153-191 266-304 (394)
47 PRK00191 tatA twin arginine tr 32.8 27 0.00069 14.1 1.7 28 144-177 12-39 (107)
48 TIGR00822 EII-Sor PTS system, 32.4 30 0.00077 13.9 2.3 214 7-272 23-251 (271)
49 pfam01566 Nramp Natural resist 29.7 34 0.00086 13.6 16.8 42 53-95 79-120 (365)
50 COG3610 Uncharacterized conser 26.4 39 0.00098 13.2 8.2 32 61-92 52-83 (156)
51 TIGR01937 nqrB NADH:ubiquinone 26.0 39 0.001 13.2 5.5 87 43-129 364-465 (508)
52 COG4147 DhlC Predicted symport 24.2 43 0.0011 13.0 8.9 117 36-152 46-199 (529)
53 PRK11272 hypothetical protein; 22.2 47 0.0012 12.8 10.7 42 230-271 249-291 (293)
54 PRK12872 ubiA prenyltransferas 22.1 47 0.0012 12.8 10.9 38 141-178 173-210 (297)
55 TIGR02840 spore_YtaF putative 21.5 48 0.0012 12.7 6.4 36 208-243 150-185 (215)
56 pfam01299 Lamp Lysosome-associ 21.3 49 0.0012 12.7 1.9 24 65-88 274-297 (305)
57 PRK09354 recA recombinase A; P 21.1 49 0.0013 12.7 1.3 17 160-176 99-115 (350)
58 cd00983 recA RecA is a bacter 21.0 49 0.0012 12.7 1.3 18 159-176 93-110 (325)
No 1
>COG1108 ZnuB ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=0 Score=445.75 Aligned_cols=272 Identities=39% Similarity=0.662 Sum_probs=267.7
Q ss_pred CHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 95688746325799999999999999987779999996589963248999999999998314414568999999999999
Q gi|254780539|r 1 MINQILEPFTYNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIPLSVGATISGMLATGIM 80 (273)
Q Consensus 1 m~~~~~~~~~~~f~~~all~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~Giala~~l~~~~~~ga~~~~ll~~~li 80 (273)
|.|.+.|+|+|+|||||++++.++++.||++|+|+++|||++++|++||++++|+++++++++++.+++++++++.+..+
T Consensus 1 ~~~~l~~~~~~~f~~~alla~~li~~~~~~lG~flvlRr~sl~gdalsHa~L~Gval~~ll~~~~~~~a~~~~l~~a~~i 80 (274)
T COG1108 1 MLELLLELFQYDFMQNALLASLLIGIACGLLGTFLVLRRMSLMGDALSHAVLPGVALGFLLGINPLLGAFIFGLLAALLI 80 (274)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 94578899889999999999999999998775999998899985499999999999999981268999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 863102465115689999999999999975211022-2421121153100270001357887679999999988878887
Q gi|254780539|r 81 VKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSPSA-VYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLL 159 (273)
Q Consensus 81 ~~l~~~~~~~~d~~igi~~~~~~algvllis~~~~~-~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~ 159 (273)
.++++|++.++|+++|++++.++|+|++++++.+++ .|++++||||+++++++|++.+.+...+++.++.++|||++..
T Consensus 81 ~~l~~~~~~~~D~aigiv~s~~~alGlvl~s~~~~~~~~l~~~LfG~il~V~~~dl~~~~ii~~i~l~~l~~f~r~ll~~ 160 (274)
T COG1108 81 GYLRRRSKLKEDTAIGIVFSSGLALGLVLLSLVPSSRVDLMHYLFGDILAVSRSDLLLIAIIGALVLLLLLLFYRELLLL 160 (274)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99986124227899999999999999998752467654499999542560789899999999999999999999999996
Q ss_pred HCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24688998717871046779999999999999999899999999999999998520898999999999999999999999
Q gi|254780539|r 160 FFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYI 239 (273)
Q Consensus 160 sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~l 239 (273)
+||||+||+.|+|++++|++++.+++++++.++|+||++++.+++++|+++|++++||+++++.+|..+|..++..|.++
T Consensus 161 ~fD~~~A~~~Gl~v~~~~~l~~~lisl~iv~~~k~VG~iLv~alLi~Paa~A~~lt~~~~~~~~ia~~~g~~s~~~Gl~l 240 (274)
T COG1108 161 TFDPEFARVLGLNVRLLHYLLLVLLALTIVAAIKAVGALLVSALLIIPAATARLLTKSFRQMLIIAVLIGLLSSVLGLYL 240 (274)
T ss_pred HCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 26899998749858899999999999999999999999999999986999999997289999999999999999999999
Q ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999579818999999999999999980424457
Q gi|254780539|r 240 SYFLDCSPGGIIVIIETSLFLLCLFFFSKQYRT 272 (273)
Q Consensus 240 S~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~~r~ 272 (273)
||++|.||||+|+++.+.+|+++.+++||+++.
T Consensus 241 Sy~~~~p~g~~Ivl~~~~~fl~~~l~~~~~~~~ 273 (274)
T COG1108 241 SYYLDLPSGPAIVLIAALLFLLSFLFGPKKGVL 273 (274)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 997078945999999999999999987431023
No 2
>pfam00950 ABC-3 ABC 3 transport family.
Probab=100.00 E-value=0 Score=422.99 Aligned_cols=257 Identities=36% Similarity=0.688 Sum_probs=253.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 25799999999999999987779999996589963248999999999998314414568999999999999863102465
Q gi|254780539|r 10 TYNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIPLSVGATISGMLATGIMVKIKETTKL 89 (273)
Q Consensus 10 ~~~f~~~all~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~Giala~~l~~~~~~ga~~~~ll~~~li~~l~~~~~~ 89 (273)
||||||||++++++++..|+.+|+++++|||+|++|+++|++++|++++++++.++.+++..++++.+..+.++++|++.
T Consensus 1 ~y~F~~~All~~ll~~~~~~~lG~~vv~rr~s~~~~alsH~al~Giala~~l~~~~~l~a~~~~~l~a~~i~~l~~~~~~ 80 (258)
T pfam00950 1 QYEFMQRALLASILVSLACGILGSFLVLRRQSLMGDALSHAVLPGVALAFFLGINPLIGAFLFGLIAAVAIGYLRRNSRL 80 (258)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 96579999999999999999998999995099998899999999999999992319999999999999999999851676
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 11568999999999999997521102-22421121153100270001357887679999999988878887246889987
Q gi|254780539|r 90 REDVAIAVVYIIFYSFAMFMLSLSPS-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDERHAHS 168 (273)
Q Consensus 90 ~~d~~igi~~~~~~algvllis~~~~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~sfD~~~A~~ 168 (273)
++|+.+|++++.++|+|++++++.++ +.|++++||||+++++++|++.......+++.++.++|||+...+||||+||+
T Consensus 81 ~~da~igi~~s~~~algvll~s~~~~~~~~~~~~LfG~il~v~~~dl~~~~~~~~~~l~~~~~~~r~l~~~~fD~~~A~~ 160 (258)
T pfam00950 81 KEDTAIGIVFSSFLALGLLLISLIKGSAVDLDHYLFGNILGISQEDLIQIAIITAIILLLLLLFWKELLLITFDPDHAKV 160 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 04799999999999999999975678765523787336976787789999999999999999999999999608999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 17871046779999999999999999899999999999999998520898999999999999999999999999579818
Q gi|254780539|r 169 VGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPG 248 (273)
Q Consensus 169 ~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g 248 (273)
+|+|+|++|+.++.+++++++.++|++|++++.+++++|+++||+++||+++++.+|..+|.++++.|+++||++|+|||
T Consensus 161 ~Gi~~~~~~~~~~~lial~vv~~~~~vG~lLv~allv~Paa~A~~~s~s~~~~~~~s~~~~~~~~~~Gl~lS~~~~lp~g 240 (258)
T pfam00950 161 IGLPVQFLYLLLLILLALTIVVAMQAVGAILVIALLITPAATARLLTRSFESMMLIASAIGMVSSVAGLLLSYYFDTPTG 240 (258)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 28861378999999999999999999999999999997999999997799999999999999999999999998299904
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 999999999999999980
Q gi|254780539|r 249 GIIVIIETSLFLLCLFFF 266 (273)
Q Consensus 249 ~~Iv~~~~~~f~~~~~~~ 266 (273)
|+|+++.+.+|+++++|+
T Consensus 241 ~~Iv~~~~~~f~~~~~fs 258 (258)
T pfam00950 241 PVIVLIATLLFLISFAFA 258 (258)
T ss_pred HHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999979
No 3
>PRK09543 znuB high-affinity zinc transporter membrane component; Reviewed
Probab=100.00 E-value=0 Score=419.25 Aligned_cols=257 Identities=20% Similarity=0.355 Sum_probs=251.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 57999999999999999877799999965899632489999999999983144145689999999999998631024651
Q gi|254780539|r 11 YNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIPLSVGATISGMLATGIMVKIKETTKLR 90 (273)
Q Consensus 11 ~~f~~~all~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~Giala~~l~~~~~~ga~~~~ll~~~li~~l~~~~~~~ 90 (273)
.|||+||++++.+++..||.+|+|+++|||+|++|++||+++||++++++++.++.+++..++++.+..+.++++|++.+
T Consensus 2 ~ef~~~a~la~~l~~~~~g~lG~f~vlrr~s~~gdalsH~~l~Gial~~l~~~~~~~~~~~~~ll~a~~i~~l~~~~~~~ 81 (261)
T PRK09543 2 IELLLPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKRPQLA 81 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 77899999999999999998879999962999988999999999999999970567999999999999999987136652
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
Q ss_conf 1568999999999999997521102-224211211531002700013578876799999999888788872468899871
Q gi|254780539|r 91 EDVAIAVVYIIFYSFAMFMLSLSPS-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDERHAHSV 169 (273)
Q Consensus 91 ~d~~igi~~~~~~algvllis~~~~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~sfD~~~A~~~ 169 (273)
+|+++|++++.++|+|++++++.++ +.|++++||||+++++++|++.+.....++..++.++|||+...+||||+||+.
T Consensus 82 ~Da~igiv~s~~~algvilis~~~~~~~~l~~~LfG~il~v~~~dl~~~~~~~~~~~~~~~~~~r~l~~~~fD~~~A~~~ 161 (261)
T PRK09543 82 IDTLLGIMAHSALSLGLVVVSLMSNVRVDLMAYLFGDLLAVTPEDLISIAIGVVIVLAILFWQWRNLLSMTISPDLAFVD 161 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHC
T ss_conf 34899999999999999895315788777321023038608998999999999999999999999999982899999882
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
Q ss_conf 78710467799999999999999998999999999999999985208989999999999999999999999995798189
Q gi|254780539|r 170 GINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGG 249 (273)
Q Consensus 170 Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~ 249 (273)
|+|++++|+.++.+++++++.++|++|++++.+++++|+++||+++||+++++.+|.++|.++++.|+++||++|+||||
T Consensus 162 Gi~v~~~~~~~~~lial~vv~~ik~VG~lLv~alLiiPaa~A~~~s~~~~~~~~~s~l~~~~~~~~Gl~~S~~~d~p~G~ 241 (261)
T PRK09543 162 GVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAVLVGMVAVTGGLTFSAFYDTPAGP 241 (261)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
T ss_conf 99889999999999999999999999999999999989999999976899999999999999999999999972999049
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999804
Q gi|254780539|r 250 IIVIIETSLFLLCLFFFS 267 (273)
Q Consensus 250 ~Iv~~~~~~f~~~~~~~~ 267 (273)
+|+++.+.+|+++++.+|
T Consensus 242 ~Ivl~~~~~f~lsli~k~ 259 (261)
T PRK09543 242 SVVLCAALLFILSMMKKQ 259 (261)
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999871
No 4
>cd06550 TM_ABC_iron-siderophores_like Transmembrane subunit (TM), of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters involved in the uptake of siderophores, heme, vitamin B12, or the divalent cations Mg2+ and Zn2+. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The TMs are bundles of alpha helices that transverse the cytoplasmic membrane multiple times. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Each TM has a prominent cytoplasmic loop which contacts an ABC and represents a conserved motif. The two TMs form either a homodimer (e.g. in the case of the BtuC subunits of the Escherichia coli BtuCD vitamin B12 transporter), a heterodimer (e.g. the TroC and TroD subunits of the Treponema pallidum general transition metal
Probab=100.00 E-value=3.9e-34 Score=211.67 Aligned_cols=246 Identities=26% Similarity=0.370 Sum_probs=215.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----HHHHHHHHHHHHHHHHHHHHC--CC
Q ss_conf 99999999999998777999999658996324899999999999831441-----456899999999999986310--24
Q gi|254780539|r 15 NTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIP-----LSVGATISGMLATGIMVKIKE--TT 87 (273)
Q Consensus 15 ~~all~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~Giala~~l~~~-----~~~ga~~~~ll~~~li~~l~~--~~ 87 (273)
..+++++..+++....++.+..+|..+.-..+++|.+.+|++++++++.. ....++..+...........+ +.
T Consensus 2 l~a~l~G~~L~~aG~~~Q~~~rN~la~p~~lGis~gA~lg~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (261)
T cd06550 2 LAALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFAGALAIALLVLLLASRGGL 81 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999999998089887960858999999999999999877778999999999999999999999973798
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 651156899999999999999752110--222421121153100270001357887679999999988878887246889
Q gi|254780539|r 88 KLREDVAIAVVYIIFYSFAMFMLSLSP--SAVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDERH 165 (273)
Q Consensus 88 ~~~~d~~igi~~~~~~algvllis~~~--~~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~sfD~~~ 165 (273)
+.++|..+|+..+..++.+..+++..+ ...|+..|++||+..++|+|++...+...+......++||+++..++|||.
T Consensus 82 ~~~~liL~Gi~is~~~~a~~~~l~~~~~~~~~~~~~wl~Gs~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~ 161 (261)
T cd06550 82 SPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSILGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDEDL 161 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 73999999999999999999999874767689999998356457879999999999999999999999999999789899
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q ss_conf 987178710467799999999999999998999999999999999985208989999999999999999999999995--
Q gi|254780539|r 166 AHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFL-- 243 (273)
Q Consensus 166 A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~lS~~~-- 243 (273)
||+.|+|++++|..++.+.++.++.+++.+|.+.+.++ +.|+.+++++++++|++++.|.++|......+..++.++
T Consensus 162 A~~lGi~v~~~~~~~l~l~~~~~~~~v~~vG~i~fvGL-i~P~iar~l~~~~~~~~l~~s~l~G~~l~~~~d~i~r~~~~ 240 (261)
T cd06550 162 AKSLGINVNLLRLLLLLLVALLVVAAVALVGVILFVGL-IAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLLP 240 (261)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 88769969999999999999999999998479999999-99999999848884439999999999999999999988366
Q ss_pred -CCCCHHHHHHHHHHHHHH
Q ss_conf -798189999999999999
Q gi|254780539|r 244 -DCSPGGIIVIIETSLFLL 261 (273)
Q Consensus 244 -~lp~g~~Iv~~~~~~f~~ 261 (273)
++|+|..+.++.+..|+.
T Consensus 241 ~~~p~g~v~~liG~p~fl~ 259 (261)
T cd06550 241 SELPVGPVTALLGAPYFLY 259 (261)
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 5640999999999999998
No 5
>PRK10440 iron-enterobactin transporter permease; Provisional
Probab=99.93 E-value=1.1e-22 Score=146.72 Aligned_cols=246 Identities=16% Similarity=0.189 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHCC----CCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999987779999996589963248999999--------999998314----414568999999999999863102
Q gi|254780539|r 19 WMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFP--------GIVVCHRLN----IPLSVGATISGMLATGIMVKIKET 86 (273)
Q Consensus 19 l~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~--------Giala~~l~----~~~~~ga~~~~ll~~~li~~l~~~ 86 (273)
+.+.++|...+.-|... |+...+-++..... |++++..+. ......++..+..+..++..++++
T Consensus 64 l~A~lvGa~LavsG~l~----Q~l~rNPLA~P~ilGvssGA~~g~~~~i~~~~~~~~~~~~~a~~g~~~~~~lv~~l~~~ 139 (330)
T PRK10440 64 LMALLIGAALGVSGAIF----QSLMRNPLGSPDVMGFNTGAWSGVLVAMVLFGQDLTAIALAAMAGGIVTSLLVWLLAWR 139 (330)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999999999999999----99957988895275799999999999999973468999999999999999999999954
Q ss_pred CCCCHH--HHHHHHHHHHHHHHHHHHHH-HC-C-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 465115--68999999999999997521-10-2-2242112115310027000135788767999999998887888724
Q gi|254780539|r 87 TKLRED--VAIAVVYIIFYSFAMFMLSL-SP-S-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFF 161 (273)
Q Consensus 87 ~~~~~d--~~igi~~~~~~algvllis~-~~-~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~sf 161 (273)
++.+.. ...|+..+..++...-++.. .+ + ..+...|+.||+...+|+|++...+...+.........|+++..++
T Consensus 140 ~~~~~~~liL~Giai~~~~~A~~~~l~~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~~l~l 219 (330)
T PRK10440 140 NGIDTFRLIIIGIGVRAMLVAFNTWLLLKASLETALTAGLWNAGSLNGLTWAKTSPSAPIIILMLIAAALLVRRMRLLEM 219 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 79983999999999999999999999994799999999999835334888899999999999999999999887267633
Q ss_pred CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899871787104677999999999999999989999999999999999852089899999999999999999999999
Q gi|254780539|r 162 DERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISY 241 (273)
Q Consensus 162 D~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~lS~ 241 (273)
|||.|++.|+|+++.+...+.+.++.++.++..+|.+-++++ +.|+.+.+...++ |+.++.|.+.|..-......++-
T Consensus 220 Gd~~A~sLGv~v~~~r~~~l~~a~ll~a~~Va~~G~IgFVGL-i~PHiaR~l~g~~-~~~l~~sal~Ga~lll~aD~laR 297 (330)
T PRK10440 220 GDDTACALGVSVERSRLLLMLVAVVLTAAATALAGPISFIAL-VAPHIARRLSGTA-RWGLTQAALCGALLLLAADLCAQ 297 (330)
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 828888759879999999999999999999997047989997-5999999981778-64189999999999999999997
Q ss_pred HH----CCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 95----7981899999999999999998042445
Q gi|254780539|r 242 FL----DCSPGGIIVIIETSLFLLCLFFFSKQYR 271 (273)
Q Consensus 242 ~~----~lp~g~~Iv~~~~~~f~~~~~~~~~~~r 271 (273)
.. ++|.| .+..+.+..|++.++..++|+|
T Consensus 298 ~l~~p~eiPvG-ivtaliGaP~fi~Ll~r~~Rr~ 330 (330)
T PRK10440 298 QLFMPYQLPVG-VVTVSLGGIYLIVLLIQESRKK 330 (330)
T ss_pred HHCCCCCCCHH-HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 64566562099-9999998999999996220469
No 6
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=99.93 E-value=3.1e-22 Score=144.18 Aligned_cols=244 Identities=15% Similarity=0.212 Sum_probs=161.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999998777999999658996324--------8999999999998314-----41456899999999999986310
Q gi|254780539|r 19 WMSTLIGCVCGLLSAYLILKGWSSIGNG--------ISHAIFPGIVVCHRLN-----IPLSVGATISGMLATGIMVKIKE 85 (273)
Q Consensus 19 l~~~li~~~~~~lG~~~v~r~~s~~~~a--------lsH~~l~Giala~~l~-----~~~~~ga~~~~ll~~~li~~l~~ 85 (273)
+++.+.|...+.-|..+ |....+- ++..+-.|++++..+. ......+++.+..+..++..+++
T Consensus 401 l~A~l~Ga~La~aG~ll----Q~l~rNPLAsP~iLGissGA~lg~v~~~~~~~~~~~~~~~~~a~~Gal~~~~lv~~l~~ 476 (666)
T PRK10577 401 LAALLAGALLAVAGVLL----QRLTRNPLASPEVLGVSSGAALGVVLALFLVPGAGFGWLLAAALLGAAAALLLILLLAR 476 (666)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999----99847988897354148649999999999988887899999999999999999999982
Q ss_pred CCCCCHHH--HHHHHHHHHHHHHH-HHHHHHC-CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 24651156--89999999999999-9752110-22242112115310027000135788767999999998887888724
Q gi|254780539|r 86 TTKLREDV--AIAVVYIIFYSFAM-FMLSLSP-SAVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFF 161 (273)
Q Consensus 86 ~~~~~~d~--~igi~~~~~~algv-llis~~~-~~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~sf 161 (273)
|.+.+++. ..|+..+..++... +++...+ +..++..|+.||....+|+|++...+...+.......+.|+++..+.
T Consensus 477 ~~~~~~~~liL~Giaisa~~~Al~~~l~~~~~~~~~~~~~Wl~Gs~~~~~~~~~~~~~~~~~~~~~~~~~~~r~L~lL~L 556 (666)
T PRK10577 477 RHGFAPERLLLTGIALSALFTALLQILLASGDPRAAQLLTWLSGSTYGVTWAQALLLLIVAVILLAVALLLRRWLDLLPL 556 (666)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHC
T ss_conf 57998189999999999999999999998088879999999967624688889999999999999999999875723526
Q ss_pred CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899871787104677999999999999999989999999999999999852089899999999999999999999999
Q gi|254780539|r 162 DERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISY 241 (273)
Q Consensus 162 D~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~lS~ 241 (273)
+||.|++.|+|+++.+...+.+.++.++.++..+|.+-++++ +.|+.+.+...+++++.++.|.++|..-.....+++.
T Consensus 557 Gd~~A~sLGv~v~~~r~~~l~~a~llta~ava~~G~I~FVGL-iaPHiaR~l~g~~~~~~l~~sal~Ga~lll~aD~l~R 635 (666)
T PRK10577 557 GDDTARALGLPLTRARLALLLLAALLTAAATATVGPLSFVGL-MAPHLARMLGFRRARPQLLIAALLGALLMVLADWLGR 635 (666)
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 989998789978999999999999999999997059999999-7999999982888633899999999999999999884
Q ss_pred H----HCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9----57981899999999999999998042
Q gi|254780539|r 242 F----LDCSPGGIIVIIETSLFLLCLFFFSK 268 (273)
Q Consensus 242 ~----~~lp~g~~Iv~~~~~~f~~~~~~~~~ 268 (273)
. .++|.| .+..+.+..|++.++..++
T Consensus 636 ~~~~P~eiPvG-ivtaliG~P~fl~Ll~r~~ 665 (666)
T PRK10577 636 TLLFPYQIPAG-LLAALIGAPYFLWLLRKQS 665 (666)
T ss_pred HCCCCCCCCHH-HHHHHHHHHHHHHHHHCCC
T ss_conf 33886560299-9999999999999862057
No 7
>PRK10441 iron-enterobactin transporter membrane protein; Provisional
Probab=99.92 E-value=5.2e-22 Score=142.94 Aligned_cols=247 Identities=15% Similarity=0.073 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHC-C----CCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9999999998777999999658996324899999999--------999831-4----41456899999999999986310
Q gi|254780539|r 19 WMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGI--------VVCHRL-N----IPLSVGATISGMLATGIMVKIKE 85 (273)
Q Consensus 19 l~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~Gi--------ala~~l-~----~~~~~ga~~~~ll~~~li~~l~~ 85 (273)
+.+.++|...+.-|... |....+-++.....|+ +++..+ + .+....++.++..+..++..+..
T Consensus 65 l~A~lvGaaLalsG~l~----Q~l~rNPLA~P~ilGissGA~l~~vl~~~~~~~~~~~~~~~~a~~ga~~~~~~v~~l~~ 140 (335)
T PRK10441 65 LAGLLAGGALGLAGALM----QTLTRNPLADPGILGVNAGASFAIVLGAALFGYSSAQEQLAMAFAGALVASLIVAFTGS 140 (335)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999----99947988784164588889999999999998777899999999999999999999999
Q ss_pred CCC--CCHH--HHHHHHHHHHHHHHH-HHHHHHCC-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 246--5115--689999999999999-97521102-22421121153100270001357887679999999988878887
Q gi|254780539|r 86 TTK--LRED--VAIAVVYIIFYSFAM-FMLSLSPS-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLL 159 (273)
Q Consensus 86 ~~~--~~~d--~~igi~~~~~~algv-llis~~~~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~ 159 (273)
+++ .+.+ ...|+..+..++... .+....+. ..++..|+.||....+|+|+....+...+......+..|+++..
T Consensus 141 ~~~~~~~~~~liL~Giai~~~~~a~~~~l~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~~~~~~~~~~~~~~L~~l 220 (335)
T PRK10441 141 QGGGQLSPVRLTLAGVALAAVLEGLTSGIALLNPDVYDQLRFWQAGSLDIRNLHTLKVVLIPVLIAGATALLLSRALNSL 220 (335)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 74898754999999999999999999999992979999999997777557778999999999999999999999999999
Q ss_pred HCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 24688998717871046779999999999999999899999999999999998520898999999999999999999999
Q gi|254780539|r 160 FFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYI 239 (273)
Q Consensus 160 sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~l 239 (273)
+++||.|++.|+|+++.+...+.+.++.++.++..+|.+-++++ +.|+.+.+...+++|+.++.|.+.|..-......+
T Consensus 221 ~lGd~~A~sLGv~v~~~r~~~l~~a~ll~a~~Va~~G~IgFVGL-i~PHiaR~l~g~~~~~~lp~sal~Ga~lll~aD~~ 299 (335)
T PRK10441 221 SLGSDTATALGSRVARTQLIGLLAITVLCGSATAVVGPIAFIGL-MMPHMARWLVGADHRWSLPVTLLATPALLLFADII 299 (335)
T ss_pred HCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 77969998689969999999999999999999993753867996-29999999818885408999999999999999999
Q ss_pred HHHH---CCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9995---7981899999999999999998042445
Q gi|254780539|r 240 SYFL---DCSPGGIIVIIETSLFLLCLFFFSKQYR 271 (273)
Q Consensus 240 S~~~---~lp~g~~Iv~~~~~~f~~~~~~~~~~~r 271 (273)
+..+ ++|.| .+....+..|++.++..+||+.
T Consensus 300 ~R~~~p~eiPvG-iitaliG~P~fl~Ll~r~~rgg 333 (335)
T PRK10441 300 GRLLVPGELRVS-VVSAFIGAPVLIFLVRRKTRGG 333 (335)
T ss_pred HHHCCCCCCHHH-HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 987566561099-9999998999999998264678
No 8
>PRK03784 vtamin B12-transporter permease; Provisional
Probab=99.92 E-value=1.5e-21 Score=140.34 Aligned_cols=247 Identities=15% Similarity=0.163 Sum_probs=185.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999877799999965899632489--------999999999983144------14568999999999999863
Q gi|254780539|r 18 IWMSTLIGCVCGLLSAYLILKGWSSIGNGIS--------HAIFPGIVVCHRLNI------PLSVGATISGMLATGIMVKI 83 (273)
Q Consensus 18 ll~~~li~~~~~~lG~~~v~r~~s~~~~als--------H~~l~Giala~~l~~------~~~~ga~~~~ll~~~li~~l 83 (273)
.+.+.++|...+.-|... |+...+-++ ..+-.|++++..++. .....++..++.+..++..+
T Consensus 61 ~l~a~l~Ga~LavsG~ll----Q~l~rNpLA~P~iLGissGA~l~~~~~~~~~~~~~~~~~~~~~a~~gal~~~~l~~~~ 136 (330)
T PRK03784 61 TLAVLLVGAALAVSGAVM----QALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPGWALSLCAIAGALIITLILLRF 136 (330)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999----9994798889850358899999999999998767779999999999999999999999
Q ss_pred HCCCCCCHH--HHHHHHHHHHHHHHHH-HHHHHCC-C-CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 102465115--6899999999999999-7521102-2-242112115310027000135788767999999998887888
Q gi|254780539|r 84 KETTKLRED--VAIAVVYIIFYSFAMF-MLSLSPS-A-VYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVL 158 (273)
Q Consensus 84 ~~~~~~~~d--~~igi~~~~~~algvl-lis~~~~-~-~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~ 158 (273)
+++++.+.. ...|+..+..++...- +....+. + .+...|++||....+|+|.+.......+ .....+..|+++.
T Consensus 137 ~~~~~~~~~~liL~Giais~~~~a~~~~l~~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~~~-~~~~~~~~r~L~~ 215 (330)
T PRK03784 137 ARRHRLSTARLLLAGVALGIICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQSWLMLALLPV-LIWLCCQGRPLNM 215 (330)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHCHH
T ss_conf 954798815899999999999999999999958999999999997265457988899999999999-9999999865604
Q ss_pred HHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72468899871787104677999999999999999989999999999999999852089899999999999999999999
Q gi|254780539|r 159 LFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSY 238 (273)
Q Consensus 159 ~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~ 238 (273)
.+++||.|++.|+|+++.+...+...++.++.++..+|.+-++++ +.|+.+.+...+++|+.++.|.+.|..-......
T Consensus 216 L~LGd~~A~~LGv~v~~~r~~~l~~a~ll~a~~Va~~G~IgFVGL-i~PhiaR~l~g~~~~~llp~sal~Ga~lll~aD~ 294 (330)
T PRK03784 216 LALGETSARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGL-VIPHILRLCGLTDHRVLLPGCALAGASLLLLADI 294 (330)
T ss_pred HHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 217948898789989999999999999999999993115873996-2999999980777505999999999999999999
Q ss_pred HHHHH----CCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99995----7981899999999999999998042445
Q gi|254780539|r 239 ISYFL----DCSPGGIIVIIETSLFLLCLFFFSKQYR 271 (273)
Q Consensus 239 lS~~~----~lp~g~~Iv~~~~~~f~~~~~~~~~~~r 271 (273)
++-.. ++|.| .+....|..|++.++..+||.|
T Consensus 295 ~~R~l~~p~elPvG-ivtaliG~P~fi~Ll~r~rr~r 330 (330)
T PRK03784 295 VARLALASAELPIG-VVTATLGAPVFIWLLLRSHRVR 330 (330)
T ss_pred HHHHHCCCCCCCHH-HHHHHHHHHHHHHHHHHCCCCC
T ss_conf 98562566652099-9999998999999898445789
No 9
>PRK09777 fecD iron-dicitrate transporter subunit FecD; Reviewed
Probab=99.92 E-value=8.9e-22 Score=141.60 Aligned_cols=245 Identities=15% Similarity=0.170 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHCC-----CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999987779999996589963248999999999--------998314-----4145689999999999998631
Q gi|254780539|r 18 IWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIV--------VCHRLN-----IPLSVGATISGMLATGIMVKIK 84 (273)
Q Consensus 18 ll~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~Gia--------la~~l~-----~~~~~ga~~~~ll~~~li~~l~ 84 (273)
.+++.++|...+.-|... |+...+.++.....|+. .+..+. ......++.+++.+..++..++
T Consensus 55 ~l~ail~G~~LalaG~ll----Q~l~rNpLA~P~iLGvssGA~l~~v~~~~~~~~~~~~~~~~~a~~gal~~~~~~~~l~ 130 (318)
T PRK09777 55 LLLALFVGAALAVAGVLV----QGIVRNPLASPDILGVNHAASLASVGALLLFPSLPVMWLPLLAFIGGMAGLILLKMLA 130 (318)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999----9993798889427568988999999999998767899999999999999999999996
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH-HHHHHHCC-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 02465115689999999999999-97521102-22421121153100270001357887679999999988878887246
Q gi|254780539|r 85 ETTKLREDVAIAVVYIIFYSFAM-FMLSLSPS-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFD 162 (273)
Q Consensus 85 ~~~~~~~d~~igi~~~~~~algv-llis~~~~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~sfD 162 (273)
+|.+...=...|+..+..++... .+....+. ..+...|+.||....+|+|++...+...+......+..|+++..+++
T Consensus 131 ~~~~~~~liL~Gi~is~~~~a~~~~l~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~ii~~~~~~~~~~~l~~l~lG 210 (318)
T PRK09777 131 GTHQPMKLALTGVALSACWASLTDYLMLSRPQDVNNALLWLTGSLWGRDWSFVKIALPLLILLLPLSLSFCRDLDLLALG 210 (318)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 67870799999999999999999999967989999999999405434788999999999999999999999971436369
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88998717871046779999999999999999899999999999999998520898999999999999999999999999
Q gi|254780539|r 163 ERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYF 242 (273)
Q Consensus 163 ~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~lS~~ 242 (273)
||.|++.|+|+++.+...+.+.++.++.++..+|.+-+.++ +.|+.+.+...++.++.++.|.+.|..-......++..
T Consensus 211 e~~A~sLGvnv~~~r~~~l~~~~~l~a~~va~vG~I~FVGL-i~PhiaR~l~g~~~~~~lp~s~l~Ga~lll~aD~l~R~ 289 (318)
T PRK09777 211 DARATTLGVSVPHTRFWALLLAVALTATGVAACGPISFIGL-VVPHLMRSLVGGRHRRLLPVSALTGALLLLLADLLARI 289 (318)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 39999779979999999999999999999980250524986-19999999808885418999999999999999999966
Q ss_pred H----CCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 5----7981899999999999999998042
Q gi|254780539|r 243 L----DCSPGGIIVIIETSLFLLCLFFFSK 268 (273)
Q Consensus 243 ~----~lp~g~~Iv~~~~~~f~~~~~~~~~ 268 (273)
. ++|.|- +..+.|..|++.++.++|
T Consensus 290 l~~p~elPvGi-vtaliG~P~fi~ll~R~r 318 (318)
T PRK09777 290 IHPPLELPAGV-LTAIIGAPWFVWLLVRMR 318 (318)
T ss_pred CCCCCCCHHHH-HHHHHHHHHHHHHHHCCC
T ss_conf 06665211999-999998999999740379
No 10
>PRK09535 btuC corrinoid ABC transporter permease; Reviewed
Probab=99.91 E-value=8e-22 Score=141.86 Aligned_cols=244 Identities=17% Similarity=0.198 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHCC----CCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999987779999996589963248999999999--------998314----414568999999999999863102
Q gi|254780539|r 19 WMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIV--------VCHRLN----IPLSVGATISGMLATGIMVKIKET 86 (273)
Q Consensus 19 l~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~Gia--------la~~l~----~~~~~ga~~~~ll~~~li~~l~~~ 86 (273)
+.+.++|...+.-|... |....+-++.....|+. ....++ ......++.++.++..++..+.++
T Consensus 100 l~A~lvGaaLavaG~lm----Q~l~RNPLAdP~iLGVssGA~lga~~~i~l~~~~~~~~~~~af~gal~~~~~v~~l~~~ 175 (366)
T PRK09535 100 LLGATVGFSLAIAGAVM----QGFFRNPMADPSIIGVSSGAAVGAVAFIVLPLVVPFGLQAAAFAGALIAAFTVYLIATR 175 (366)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999----99728888697287999999999999999988888999999999999999999999980
Q ss_pred CC-CCHH--HHHHHHHHHHHHHHH-HHHHHHCC-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 46-5115--689999999999999-97521102-2242112115310027000135788767999999998887888724
Q gi|254780539|r 87 TK-LRED--VAIAVVYIIFYSFAM-FMLSLSPS-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFF 161 (273)
Q Consensus 87 ~~-~~~d--~~igi~~~~~~algv-llis~~~~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~sf 161 (273)
++ .+.. ...|+..+..++... ++....+. ..+...|+.||+...+|+|++.......+.........|+++...+
T Consensus 176 ~g~~~~~~LiL~Giavs~~~~Al~~~l~~~~~~~~~~~~~Wl~Gsl~~~~w~~v~~~~~~~~i~~~~~~~~~r~L~~L~l 255 (366)
T PRK09535 176 NGRTPTATLLLAGVAVQTFLGAVISFLLLHSGESIRRAVYWLMGHLHGSTWGDVRAALPVVVVGFVVLLAYARDLNVLLL 255 (366)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHC
T ss_conf 68887599999999999999999999997481768999999977157898889999999999999999999996420213
Q ss_pred CHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 68899871787104677999999999999999989999999999999999852089899999999999999999999999
Q gi|254780539|r 162 DERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISY 241 (273)
Q Consensus 162 D~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~lS~ 241 (273)
+||.|++.|+|+++.+..++.+.++.+..++..+|.+-++++ +.|+.+.+...+++|..++.|.+.|.........++.
T Consensus 256 Gde~A~sLGvnv~~~r~~~l~la~llta~~Va~~G~IgFVGL-i~PHiaR~l~g~~~r~llp~saL~Ga~lll~aD~laR 334 (366)
T PRK09535 256 GEEDAHTLGIEVERTKRILLAAASVVTAAAVAVAGVIGFVGL-IVPHAMRLLVGPDHRILLPTSALAGASFLVATDTVAR 334 (366)
T ss_pred CHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 959998789988999999999999999999993341646986-0899999992888434999999999999999999756
Q ss_pred H--HCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9--57981899999999999999998042
Q gi|254780539|r 242 F--LDCSPGGIIVIIETSLFLLCLFFFSK 268 (273)
Q Consensus 242 ~--~~lp~g~~Iv~~~~~~f~~~~~~~~~ 268 (273)
. .++|.|-... ..+..|++.++-++|
T Consensus 335 ~~p~ElPvGivta-lIG~P~fl~LL~rr~ 362 (366)
T PRK09535 335 SGATEPPVGIITA-ALGAPFFLYLLRKRE 362 (366)
T ss_pred CCCCCCCHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 4864454999999-998999999998406
No 11
>PRK10577 iron-hydroxamate transporter permease subunit; Provisional
Probab=99.91 E-value=5.3e-21 Score=137.22 Aligned_cols=251 Identities=16% Similarity=0.204 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHH
Q ss_conf 79999999999999998777999999658996324--------8999999999998314-----4145689999999999
Q gi|254780539|r 12 NYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNG--------ISHAIFPGIVVCHRLN-----IPLSVGATISGMLATG 78 (273)
Q Consensus 12 ~f~~~all~~~li~~~~~~lG~~~v~r~~s~~~~a--------lsH~~l~Giala~~l~-----~~~~~ga~~~~ll~~~ 78 (273)
.-+-|.+ .++++|...+.-|... |....+- ++..+-.|++++..+. ......|+..+.++..
T Consensus 61 ~RLPR~l-~AllvGa~LalaG~l~----Q~v~rNPLAsP~~LGvssGA~lg~v~~~~~~~~~~~~~~~~~A~~Ga~~a~~ 135 (666)
T PRK10577 61 SLLPRLA-IALLAGAALGLAGALL----QQVLRNPLASPTTLGVAAGAQLGLVAATLFAPALLALASQLAAFAGALLAAA 135 (666)
T ss_pred CCHHHHH-HHHHHHHHHHHHHHHH----HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4288999-9999999999999999----9973887879738689999999999999999878889999999999999999
Q ss_pred HHHHHHCCCCCCHHH--HHHHHHHHHHHHHH-HHHHHHCC-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 998631024651156--89999999999999-97521102-224211211531002700013578876799999999888
Q gi|254780539|r 79 IMVKIKETTKLREDV--AIAVVYIIFYSFAM-FMLSLSPS-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWK 154 (273)
Q Consensus 79 li~~l~~~~~~~~d~--~igi~~~~~~algv-llis~~~~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r 154 (273)
++..++++++.++.. ..|+..+..++... .+...+++ ..++..|+.||....+|+|+....+...+.........|
T Consensus 136 lv~~la~~~~~s~~~liL~Giavs~~~~a~~~~l~~~~~~~~~~~~~W~~Gsl~~~~w~~v~~l~~~~~~~~~~~~~~~r 215 (666)
T PRK10577 136 LVFALAGGKRLSPLRLVLAGMVVSLYLGAITTLLVLFNEQQLQGLFLWGAGSLAQNGWSGVQRLLPQLLVGLLLLLLLIR 215 (666)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999805799829999999999999999999999939999999899882538799877899999999999999999987
Q ss_pred HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Q ss_conf 78887246889987178710467799999999999999998999999999999999985208989999999999999999
Q gi|254780539|r 155 DFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSF 234 (273)
Q Consensus 155 ~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~ 234 (273)
+++..+.|||.|++.|+|+++.+...+.+.++.++.++..+|.|-++++ +.|+.+.+...+++|+.++.|.+.|..-.+
T Consensus 216 ~L~~L~LGd~~A~sLGv~v~~~r~~~l~~a~llta~aVa~~G~IgFVGL-iaPhiaR~l~~~~~~~~lp~s~l~Ga~lll 294 (666)
T PRK10577 216 PLTLLGLGDDVARSLGLAVSLARLAALALAIFLSAVVVSAVGPIGFIGL-AAPNLARLLGARRLRARLLLSPLIGALLLL 294 (666)
T ss_pred HCCCHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 5782303999997779978999999999999999999994132768886-099999998377854079999999999999
Q ss_pred HHHHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999999995-----79818999999999999999980424
Q gi|254780539|r 235 LGSYISYFL-----DCSPGGIIVIIETSLFLLCLFFFSKQ 269 (273)
Q Consensus 235 ~G~~lS~~~-----~lp~g~~Iv~~~~~~f~~~~~~~~~~ 269 (273)
....++-.. ++|+| .+....+..|++.++...|+
T Consensus 295 ~aD~~~r~l~~~~~elP~G-~vTaliGaP~ll~Ll~R~~~ 333 (666)
T PRK10577 295 LTDQLVLLLARVGAELPTG-AVTALIGAPLLLWLLPRLRS 333 (666)
T ss_pred HHHHHHHHHCCCCCCCHHH-HHHHHHHHHHHHHHHHHHHC
T ss_conf 9999998603575304079-99999878999999997302
No 12
>COG0609 FepD ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.90 E-value=1.4e-20 Score=134.81 Aligned_cols=261 Identities=18% Similarity=0.199 Sum_probs=189.5
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CC-----CHHHHHHHHHHHHHHHH
Q ss_conf 32579999999999999998777999999658996324899999999999831---44-----14568999999999999
Q gi|254780539|r 9 FTYNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRL---NI-----PLSVGATISGMLATGIM 80 (273)
Q Consensus 9 ~~~~f~~~all~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~Giala~~l---~~-----~~~~ga~~~~ll~~~li 80 (273)
...|-...+++++...++.-..+-......--+..--+++..+-.|++++..+ .. .....++.++.++..++
T Consensus 53 ~RlPR~l~a~l~Ga~LavsG~~lQ~v~rNpLAdP~ilGIssGA~~~~~l~i~~~~~~~~~~~~~l~~~af~ga~~~~~lv 132 (334)
T COG0609 53 IRLPRILLAILVGAALAVAGALLQGVTRNPLADPGILGISSGASLGAVLAILLFPLGLGISIYLLPLAAFLGALLAALLV 132 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 57999999999999999999999999548789932305655699999999999840100378999999999999999999
Q ss_pred HHHHCCCCC--CHH--HHHHHHHHHHHHHHHHHH-HHHCC---CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 863102465--115--689999999999999975-21102---2242112115310027000135788767999999998
Q gi|254780539|r 81 VKIKETTKL--RED--VAIAVVYIIFYSFAMFML-SLSPS---AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMK 152 (273)
Q Consensus 81 ~~l~~~~~~--~~d--~~igi~~~~~~algvlli-s~~~~---~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~ 152 (273)
..++++++. ++. ...|+..+..++...-++ ...++ ..+...|++|++...+|+|+....+...+.+......
T Consensus 133 ~~ia~~~~~~~~~~~liL~Giais~~~~al~~~l~~~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~~i~l~~~~~~ 212 (334)
T COG0609 133 YLIARLRGGGLSPLRLILAGIALSALFGALTSLLLILADDSLALQAILFWLLGSLGGATWSDVLILLPVILIGLLLLLFL 212 (334)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998516888838999999999999999999999966738777784987505645587788899999999999999999
Q ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 88788872468899871787104677999999999999999989999999999999999852089899999999999999
Q gi|254780539|r 153 WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATS 232 (273)
Q Consensus 153 ~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~ 232 (273)
+|+++....|||.||+.|+|+++.+...+...++.+.+++..+|.+-..++ +.|+.+.+...+++|..++.|.++|..-
T Consensus 213 ~~~l~il~lgd~~A~~LGi~v~~~r~~~~i~a~llt~~~Vs~~G~I~FVGL-i~PHiaR~lvg~~~r~lip~s~l~Ga~l 291 (334)
T COG0609 213 SRKLNILSLGDELAKSLGINVNRLRLLLLLLASLLTAAAVSLVGPIGFVGL-IAPHIARLLVGNDHRYLLPLSALLGALL 291 (334)
T ss_pred HHHCCHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH-HHHHHHHHHHCCCCCEEHHHHHHHHHHH
T ss_conf 774767544989998779878999999999999999999998121688886-3899999982876422178789999999
Q ss_pred HHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9999999999----57981899999999999999998042445
Q gi|254780539|r 233 SFLGSYISYF----LDCSPGGIIVIIETSLFLLCLFFFSKQYR 271 (273)
Q Consensus 233 ~~~G~~lS~~----~~lp~g~~Iv~~~~~~f~~~~~~~~~~~r 271 (273)
......++.. .+.|.| .+....+..|++.++.++||+|
T Consensus 292 ll~aD~~~R~i~~p~e~pvG-iitaliGaP~FiyLl~r~~~~~ 333 (334)
T COG0609 292 LLLADILARTILAPAEIPVG-IVTALIGAPYFIYLLRKKRKRR 333 (334)
T ss_pred HHHHHHHHHHCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999863473234589-9999999999999999862356
No 13
>pfam01032 FecCD FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.
Probab=99.89 E-value=5.5e-20 Score=131.46 Aligned_cols=240 Identities=20% Similarity=0.258 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998777999999658996324899999--------99999983144------145689999999999998631
Q gi|254780539|r 19 WMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIF--------PGIVVCHRLNI------PLSVGATISGMLATGIMVKIK 84 (273)
Q Consensus 19 l~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l--------~Giala~~l~~------~~~~ga~~~~ll~~~li~~l~ 84 (273)
+++.++|...+.-|... |+...+-++.... .|++++..+.. .....+++++..+..++..+.
T Consensus 47 l~ail~Ga~L~vsG~l~----Q~l~rNpLA~P~iLGissgA~l~~~~~~~~~~~~~~~~~~~~~a~~g~~~~~~lv~~l~ 122 (312)
T pfam01032 47 LAALLVGAALAVSGALL----QTVTRNPLADPSILGVSSGAALGAVLAILLFGGSLSIFGLPLAAFIGALLAALLVLLLA 122 (312)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999----99847988883376588579999999999987677899999999999999999999999
Q ss_pred CC-CCCCHH--HHHHHHHHHHHHHHHHH-HHH-HCC-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02-465115--68999999999999997-521-102-2242112115310027000135788767999999998887888
Q gi|254780539|r 85 ET-TKLRED--VAIAVVYIIFYSFAMFM-LSL-SPS-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVL 158 (273)
Q Consensus 85 ~~-~~~~~d--~~igi~~~~~~algvll-is~-~~~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~ 158 (273)
++ ++.+.. ...|+..+..++...-+ ..+ .++ ..++..|++||....+|+|++...+...........+.|++..
T Consensus 123 ~~~~~~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~~~~~~~W~~Gsl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 202 (312)
T pfam01032 123 RKRGGLSPLRLILAGIAVSALFSALTSLLLLLADPEALQSILFWLLGSLSGASWSDVLILLPLLLIGLLLLLLLARKLNL 202 (312)
T ss_pred HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 70689877999999999999999999999997699999999999715166888899999999999999999999876058
Q ss_pred HHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72468899871787104677999999999999999989999999999999999852089899999999999999999999
Q gi|254780539|r 159 LFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSY 238 (273)
Q Consensus 159 ~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~ 238 (273)
.+.|||.|++.|+|+++.+...+...++.++.++..+|.+-+.++ +.|+.+.+...+++|+.++.|.+.|..-...+..
T Consensus 203 l~lG~~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~~G~I~FvGL-i~Phiar~l~g~~~~~~l~~s~l~Ga~lll~aD~ 281 (312)
T pfam01032 203 LALGDDVAKSLGVNVNRVRLLLLLLAALLTAAAVALVGPIGFVGL-IVPHIARLLVGANHRRLLPLSALIGALLLLLADL 281 (312)
T ss_pred HHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 874939999769989999999999999999999980169998997-4999999980888641899999999999999999
Q ss_pred HHHH----HCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999----5798189999999999999999
Q gi|254780539|r 239 ISYF----LDCSPGGIIVIIETSLFLLCLF 264 (273)
Q Consensus 239 lS~~----~~lp~g~~Iv~~~~~~f~~~~~ 264 (273)
++.. .++|.|-.+. +.+..|++.++
T Consensus 282 i~r~~~~p~eiPvgvvta-liG~P~fi~ll 310 (312)
T pfam01032 282 LARTLLAPIELPVGIVTA-LIGAPFFIYLL 310 (312)
T ss_pred HHHHHCCCCCCCHHHHHH-HHHHHHHHHHH
T ss_conf 997716766510999999-99999999986
No 14
>PRK11228 fecC iron-dicitrate transporter permease subunit; Provisional
Probab=99.89 E-value=5.2e-20 Score=131.59 Aligned_cols=240 Identities=18% Similarity=0.210 Sum_probs=178.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999987779999996589963248--------99999999999831441------45689999999999998631
Q gi|254780539|r 19 WMSTLIGCVCGLLSAYLILKGWSSIGNGI--------SHAIFPGIVVCHRLNIP------LSVGATISGMLATGIMVKIK 84 (273)
Q Consensus 19 l~~~li~~~~~~lG~~~v~r~~s~~~~al--------sH~~l~Giala~~l~~~------~~~ga~~~~ll~~~li~~l~ 84 (273)
+.+.++|...+.-|... |....+.+ ++.+-.|++++..+... ....++..+.++...+..+.
T Consensus 56 l~ailvGa~La~aG~ll----Q~l~rNPLA~P~iLGissGA~lg~~~~~~l~~~~~~~~~~~~~a~~g~~~~~~~v~~l~ 131 (323)
T PRK11228 56 LVAVLIGASLALAGALL----QTLTHNPLASPSLLGINSGAALAMALTSALSPTPFAGYSLSFIAACGGGLSWLLVMTAG 131 (323)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999----99946988896302045799999999999998888899999999999999999999999
Q ss_pred C--CCCCCHH--HHHHHHHHHHHHH-HHHHHHHHCC-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0--2465115--6899999999999-9997521102-2242112115310027000135788767999999998887888
Q gi|254780539|r 85 E--TTKLRED--VAIAVVYIIFYSF-AMFMLSLSPS-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVL 158 (273)
Q Consensus 85 ~--~~~~~~d--~~igi~~~~~~al-gvllis~~~~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~ 158 (273)
+ |++.+.+ ...|+..+..++. ..++....++ ..+...|++||....+|+|++...+...+.........|+++.
T Consensus 132 ~~~~~~~~~~~liL~Giais~~~~a~~~~l~~~~~~~~~~~~~Wl~Gsl~~~~w~~v~~~~~~~~i~~~~~~~~~~~L~~ 211 (323)
T PRK11228 132 GGWRHTHDRNRLILAGIALSALCMALTRITLLLAEDHAYGIFYWLAGGVSHARWQEVWQLLPFVVTAVPVVLLLANQLNL 211 (323)
T ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86267887189999999999999999999999481999999999955666888999999999999999999999987056
Q ss_pred HHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 72468899871787104677999999999999999989999999999999999852089899999999999999999999
Q gi|254780539|r 159 LFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSY 238 (273)
Q Consensus 159 ~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~ 238 (273)
.+++||.|++.|+|+++.|...+...++.++.++..+|.+-+.++ +.|+.+.+..+++.|+.++.|.++|..-......
T Consensus 212 l~lGd~~A~sLGv~v~~~r~~~l~~~~~l~a~~va~~G~I~FVGL-ivPhiaR~l~g~~~~~~lp~sal~Ga~lll~aD~ 290 (323)
T PRK11228 212 LNLSDSTAHTLGVNLTRLRLVVNMLVLLLVGACVSVAGPVAFIGL-LVPHLARFWAGFDQRNVLPVSMLLGATLMLLADL 290 (323)
T ss_pred HHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 745959998789979999999999999999999966771622985-0999999981888751799999999999999999
Q ss_pred HHHHH----CCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99995----798189999999999999999
Q gi|254780539|r 239 ISYFL----DCSPGGIIVIIETSLFLLCLF 264 (273)
Q Consensus 239 lS~~~----~lp~g~~Iv~~~~~~f~~~~~ 264 (273)
++... ++|.|-.+.++. ..|++.++
T Consensus 291 iaR~l~~p~eiPvGivta~iG-aP~fi~Ll 319 (323)
T PRK11228 291 LARALAFPGELPAGAVLALIG-APCFVWLA 319 (323)
T ss_pred HHHHCCCCCCCCHHHHHHHHH-HHHHHHHE
T ss_conf 986615665310999999998-99999831
No 15
>COG4779 FepG ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.46 E-value=7.6e-13 Score=90.95 Aligned_cols=205 Identities=14% Similarity=0.232 Sum_probs=156.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCC-CCHH--HHHHHHH-HHHHHHHHHHHHHHC--CCCCCCHHHCCCCCCCCHHHHHH
Q ss_conf 1456899999999999986310246-5115--6899999-999999999752110--22242112115310027000135
Q gi|254780539|r 64 PLSVGATISGMLATGIMVKIKETTK-LRED--VAIAVVY-IIFYSFAMFMLSLSP--SAVYVENIFLGNTLSMSRSDTIQ 137 (273)
Q Consensus 64 ~~~~ga~~~~ll~~~li~~l~~~~~-~~~d--~~igi~~-~~~~algvllis~~~--~~~~l~~~LfG~il~i~~~di~~ 137 (273)
+...+|+..++..+..+..+.+|+. .+.. ..+|+-- ....++--.++.+.+ ......-|+-||+-..+|+|++.
T Consensus 132 ~~~~aAi~GGi~TA~avylla~r~g~~~~~RLIivGIGvgA~L~a~n~~ll~~a~le~A~ta~lW~aGSLn~~~W~~v~p 211 (346)
T COG4779 132 AIALAAIAGGIVTALAVYLLAWRNGTIGGFRLIIVGIGVGAMLVAFNTWLLVQADLEQAMTAGLWLAGSLNGLTWAHVLP 211 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 67999998668999999999982377676389999401999999999889744029888999998548845576888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 78876799999999888788872468899871787104677999999999999999989999999999999999852089
Q gi|254780539|r 138 VLIITFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKS 217 (273)
Q Consensus 138 ~~~~~~i~~~~~~~~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~ 217 (273)
......+.+-.....-|++.+....+|.|+..|+++++.|+..+..-....+....+.|.+-++++ ..|. +||.++++
T Consensus 212 ~~~~~~vi~p~~~~l~R~lr~lEmGDd~A~~LGV~vertRL~~ilvaV~lta~aTaaAGPIaFIAL-aAPQ-iArrL~~t 289 (346)
T COG4779 212 SLLILAVILPAAAYLVRRLRLLEMGDDIACALGVSVERTRLLMILVAVALTAAATAAAGPIAFIAL-AAPQ-IARRLSGT 289 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH-CCHH-HHHHHHCC
T ss_conf 999999999999999988888760156776517353288899999999999999973465345655-2369-99997358
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8999999999999999999999999----57981899999999999999998042445
Q gi|254780539|r 218 FGTYLVSSSLLGATSSFLGSYISYF----LDCSPGGIIVIIETSLFLLCLFFFSKQYR 271 (273)
Q Consensus 218 ~~~~~~~s~~~g~~~~~~G~~lS~~----~~lp~g~~Iv~~~~~~f~~~~~~~~~~~r 271 (273)
.+..+.-+.+.|..--.....++-+ +.+|.| .+....+.+|+.++++.++|+|
T Consensus 290 ~gv~L~~~almGa~LLlaADll~q~l~~~~~lPVG-~vT~~lGG~Yl~~LL~r~~r~~ 346 (346)
T COG4779 290 AGVSLLAAALMGALLLLAADLLAQHLFTPYRLPVG-VVTVSLGGIYLIWLLIRESRKK 346 (346)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEE-EEEEECCHHHHHHHHHHHHHCC
T ss_conf 99305888998879999999999743623137705-7875314599999999986249
No 16
>COG4606 CeuB ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=1.2e-11 Score=84.21 Aligned_cols=248 Identities=17% Similarity=0.191 Sum_probs=183.6
Q ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCC--CC---HHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999877799999----96589963248999999999998314--41---45689999999999998631024651
Q gi|254780539|r 20 MSTLIGCVCGLLSAYLI----LKGWSSIGNGISHAIFPGIVVCHRLN--IP---LSVGATISGMLATGIMVKIKETTKLR 90 (273)
Q Consensus 20 ~~~li~~~~~~lG~~~v----~r~~s~~~~alsH~~l~Giala~~l~--~~---~~~ga~~~~ll~~~li~~l~~~~~~~ 90 (273)
+.++.|...+..|-..- .|=-+--..+-.+++-.|+.+..++- .+ -.+.|+.+++....+-..+-+|-+.+
T Consensus 55 aIlLaG~smsvaGLIMQ~ltqNrFv~PstaGT~e~A~LGill~l~~fp~a~~~~kmlvA~v~al~Gt~~F~~~l~ri~~k 134 (321)
T COG4606 55 AILLAGSSMSVAGLIMQQLTQNRFVEPSTAGTTESAKLGILLSLLLFPSASLLIKMLVAFVFALAGTLLFMMILRRIKLK 134 (321)
T ss_pred HHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99994308889999999998547668865444878775076775550787289999999999999999999999755634
Q ss_pred HH---HHHHHHHHHHHHHHHHHHH-HHCCCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 15---6899999999999999752-1102224211211531002700013578876799999999888788872468899
Q gi|254780539|r 91 ED---VAIAVVYIIFYSFAMFMLS-LSPSAVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDERHA 166 (273)
Q Consensus 91 ~d---~~igi~~~~~~algvllis-~~~~~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~sfD~~~A 166 (273)
+. -.+|+++.+-.+.---++. ..+--+++.+|+-||...+.+.+ +-...+.......-+++-.++......||++
T Consensus 135 ~~i~VPLiGIm~Ggvi~sitTFiAy~~dllQ~l~~W~~G~Fs~v~~Gr-YElL~i~~~l~i~ay~~AdrfTi~GmGedfs 213 (321)
T COG4606 135 DVLFVPLIGIMFGGVISSITTFIAYRFDLLQSLGAWLQGDFSGVLRGR-YELLWISIPLAILAYLFADRFTIAGMGEDFS 213 (321)
T ss_pred CEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC-EEEEHHHHHHHHHHHHHHHHEEEECCCHHHH
T ss_conf 547632499998859999999999999999986687607538775153-2561678999999999860324520556666
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_conf 871787104677999999999999999989999999999999999852089899999999999999999----9999999
Q gi|254780539|r 167 HSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFL----GSYISYF 242 (273)
Q Consensus 167 ~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~----G~~lS~~ 242 (273)
.-.|+|-++.-.+=+.++++..+.-+-.||.+...++ +.|...++..++++|+.+++-.+.|...... |..+.|.
T Consensus 214 ~NLGLnY~~v~~igl~iValitsvVvvtVG~lPFLGL-IvPNiVs~~~GDnLr~~lp~val~Ga~~VL~CDIigRvii~P 292 (321)
T COG4606 214 VNLGLNYNRVVNIGLFIVALITSVVVVTVGMLPFLGL-IVPNIVSLYRGDNLRQNLPWVALLGALFVLLCDIIGRVIIFP 292 (321)
T ss_pred HHCCCCHHHHHHHHHHHHHHHHCEEEEEECCCCCCEE-EHHHHHHHHHCCCHHHCCCHHHHHHHHHHHHHHHHCCEEEEE
T ss_conf 6507249999999999999975037999857651214-112477898455443235599997319999998642368755
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 5798189999999999999999804244
Q gi|254780539|r 243 LDCSPGGIIVIIETSLFLLCLFFFSKQY 270 (273)
Q Consensus 243 ~~lp~g~~Iv~~~~~~f~~~~~~~~~~~ 270 (273)
+++|.|-++-++.+.+|+.- +..+||+
T Consensus 293 yEipis~~~GViGs~vFl~L-llR~~~~ 319 (321)
T COG4606 293 YEIPISLILGVIGSAVFLLL-LLRGRRH 319 (321)
T ss_pred EECCHHHHHHHHHHHHHHHH-HHHCCCC
T ss_conf 51316787998889999999-9813555
No 17
>COG4605 CeuC ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=98.91 E-value=6.4e-08 Score=63.05 Aligned_cols=178 Identities=14% Similarity=0.266 Sum_probs=134.8
Q ss_pred CCHHHHHHHHHHHHHHH-HHHHHH-HHCCCC-CCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
Q ss_conf 51156899999999999-999752-110222-421121153100270001357887679999999988878887246889
Q gi|254780539|r 89 LREDVAIAVVYIIFYSF-AMFMLS-LSPSAV-YVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDERH 165 (273)
Q Consensus 89 ~~~d~~igi~~~~~~al-gvllis-~~~~~~-~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~sfD~~~ 165 (273)
.+.--.+|+++-..+.- .-.+-. .+|+.- -+++-+|+|.-.++.+-++...++..+.....+...|.++..+.++|.
T Consensus 130 l~~~lLiGlv~G~lFrSiSsfmq~liDPneF~~lQ~~mFAsFn~int~ll~i~a~i~~~~~v~~~r~~~~LDVl~LgRd~ 209 (316)
T COG4605 130 LHLLLLIGLVLGTLFRSISSFMQRLIDPNEFAILQARMFASFNNINTELLAIAAIILLVVTVYLFRYRKVLDVLSLGRDT 209 (316)
T ss_pred EEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHCCHHH
T ss_conf 11899999999888888999999975958899999987754302673079999999999999999987750263337666
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 9871787104677999999999999999989999999999999999852089--89999999999999999999999---
Q gi|254780539|r 166 AHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKS--FGTYLVSSSLLGATSSFLGSYIS--- 240 (273)
Q Consensus 166 A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~--~~~~~~~s~~~g~~~~~~G~~lS--- 240 (273)
|.-.|++.++..-..+..+++-++++...||.+...++++ +.-|+.+.++ ++..++.+.++|.++-..|-+.=
T Consensus 210 AinLGi~y~k~~~~lL~ivavLvsvSTALVGPitFlGlLv--anLay~~~~tykH~~ll~~~ili~~i~L~ggQ~vve~V 287 (316)
T COG4605 210 AINLGIDYEKVTKILLLIVAVLVSVSTALVGPITFLGLLV--ANLAYEFSKTYKHSYLLPAAILIGVIALVGGQFVVERV 287 (316)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7651862688788999999999999998844299999999--99999984434511046899999999998129999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99579818999999999999999980424
Q gi|254780539|r 241 YFLDCSPGGIIVIIETSLFLLCLFFFSKQ 269 (273)
Q Consensus 241 ~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~ 269 (273)
+.++.+-+ .|+=..|++|++.+++.++|
T Consensus 288 f~~~t~lS-viIefvGG~~FiyLllr~~~ 315 (316)
T COG4605 288 FAFQTTLS-VIIEFVGGIYFIYLLLRRNK 315 (316)
T ss_pred HHCCCEEE-EEEEECCCHHEEEEEEECCC
T ss_conf 84276378-62032052413767871578
No 18
>COG4139 BtuC ABC-type cobalamin transport system, permease component [Coenzyme metabolism]
Probab=98.83 E-value=1.2e-07 Score=61.51 Aligned_cols=223 Identities=12% Similarity=0.138 Sum_probs=159.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHCC--CC----HHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999987779999996589963248999999999--------998314--41----456899999999999986
Q gi|254780539|r 17 AIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIV--------VCHRLN--IP----LSVGATISGMLATGIMVK 82 (273)
Q Consensus 17 all~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~Gia--------la~~l~--~~----~~~ga~~~~ll~~~li~~ 82 (273)
-.++..++|...+.-|... |.++++-+++-.+.|++ .+.+++ .. ....|.+.+++...+...
T Consensus 59 R~lAv~~vGAsLAVsGAvm----QaL~~N~LAEPGllGVs~GA~Valv~~vL~~~~l~~~~a~~~~Ai~GALl~TliLl~ 134 (326)
T COG4139 59 RTLAVLLVGAALAVSGAVM----QALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLR 134 (326)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHCCCCCCCCEEEECCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8899999727888708999----999658666876343158840999999997477575899999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHHHHHH---H---HHCCC---CCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3102465115689999999999999975---2---11022---2421121153100270001357887679999999988
Q gi|254780539|r 83 IKETTKLREDVAIAVVYIIFYSFAMFML---S---LSPSA---VYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKW 153 (273)
Q Consensus 83 l~~~~~~~~d~~igi~~~~~~algvlli---s---~~~~~---~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~ 153 (273)
..||.+.. +-....+.++|++-- + +...+ .+++-|+.|+...++|.+-+.... ..-+++-+.+-.
T Consensus 135 ~aRr~~lT-----arLLLvGVALGIi~~A~mTWA~YFS~sL~LRQLMYWmMG~~~GVdW~Q~~L~La-~~PvvIWl~~Qg 208 (326)
T COG4139 135 FARRHLST-----SRLLLAGVALGIICSALMTWAIYFSTSLDLRQLMYWMMGGFGGVDWRQSWLMLA-LIPVLIWICCQS 208 (326)
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHH-HHHHHHHHHCCC
T ss_conf 99999989-----899999999999888785620031065269999999967756742999989999-977888610167
Q ss_pred HHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 87888724688998717871046779999999999999999899999999999999998520898999999999999999
Q gi|254780539|r 154 KDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSS 233 (273)
Q Consensus 154 r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~ 233 (273)
|+++..+.+|..||-.|++..+++..+..-++..+.+++...|+|-++++ ++|+.-...-..+.|..++.+.+-|...-
T Consensus 209 ~vLn~l~LGE~~ArQLG~~lh~~R~~LvLAi~llVG~SVAL~GvIgFiGL-ViPHiLRLt~~td~RlLLp~~Al~Ga~~L 287 (326)
T COG4139 209 RPLNMLALGEISARQLGLPLWFWRNVLVLATGWMVGVSVALAGAIGFIGL-VIPHILRLCGLTDHRLLLPGCALAGASAL 287 (326)
T ss_pred CCCHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCHHHHCCHHH
T ss_conf 63147762514688729718999999999999998689997527767667-68899998357423201251465032799
Q ss_pred HHHHHHHHH----HCCCCHHH
Q ss_conf 999999999----57981899
Q gi|254780539|r 234 FLGSYISYF----LDCSPGGI 250 (273)
Q Consensus 234 ~~G~~lS~~----~~lp~g~~ 250 (273)
......+.. -++|-|-.
T Consensus 288 l~AD~vARlaL~S~ELPiGVV 308 (326)
T COG4139 288 LLADIVARLALASAELPIGVV 308 (326)
T ss_pred HHHHHHHHHHHCCCCCCCEEE
T ss_conf 999999998712367773268
No 19
>TIGR03622 urea_t_UrtB_arc urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtB subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=97.90 E-value=0.0013 Score=38.64 Aligned_cols=129 Identities=13% Similarity=0.118 Sum_probs=72.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 02700013578876799999999888-----7888724688998717871046779999999999999999899999999
Q gi|254780539|r 129 SMSRSDTIQVLIITFSVACIVYMKWK-----DFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIAT 203 (273)
Q Consensus 129 ~i~~~di~~~~~~~~i~~~~~~~~~r-----~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~al 203 (273)
..+..|++.......+......+++| .+...+-|||.|++.|+|+++++..-..+-+.....+ |.+...-.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~a~RAv~~n~~~A~~~GIn~~r~~~~~f~is~~lAg~a----G~l~a~~~ 204 (283)
T TIGR03622 129 TYSTYRVFLPLVAIGVLVGLYVLFTRTEFGVRARATIQDPETARAMGVDTDRMYVTTFAIGSGLAGLT----GALYAPIG 204 (283)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHH
T ss_conf 23299999999999999999999986889898899965899997769787489999999999999999----99998750
Q ss_pred HHH---------HHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 999---------99999852--089899999999999999999999999957981899999999999999998042
Q gi|254780539|r 204 VIT---------PGATAKLM--SKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSK 268 (273)
Q Consensus 204 lv~---------Paa~A~~~--~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~ 268 (273)
-+. .+.++-.+ ..|..-.+.-+.+++........+.+.++.. .....+.++++.+.|+
T Consensus 205 ~v~p~~g~~~~~~~~~a~ilGG~gs~~Gaiigg~ilg~~~~~~~~~~~~~~~~-------~~~~~ili~vL~~rP~ 273 (283)
T TIGR03622 205 AITPDRGSIFLVEAFVAVVVGGPSVVLGTALAGGLLGFINAVFSNLYGTFVGL-------IALLIVAIIALRVLPD 273 (283)
T ss_pred CCCCCCHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHCCC
T ss_conf 75866148999998671214787655899999999999999999996589999-------9999999999998799
No 20
>cd06582 TM_PBP1_LivH_like Transmembrane subunit (TM) of Escherichia coli LivH and related proteins. LivH is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivH forms a heterodimer with another TM, LivM, to generate the transmembrane pore. LivM is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo
Probab=97.48 E-value=0.0058 Score=34.91 Aligned_cols=129 Identities=20% Similarity=0.243 Sum_probs=66.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2700013578876799999999-----88878887246889987178710467799999999999999998999999999
Q gi|254780539|r 130 MSRSDTIQVLIITFSVACIVYM-----KWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATV 204 (273)
Q Consensus 130 i~~~di~~~~~~~~i~~~~~~~-----~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~all 204 (273)
.++.+.+..............+ +-|.+....=|||-||..|+|+++++..-+.+.+.....+ |.+...-.-
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~rT~~Gr~l~Ai~~n~~aA~~~Ginv~r~k~~af~isg~lagla----G~l~a~~~~ 201 (272)
T cd06582 126 IPPYRLFIIAVALVLLAALYLFLRRTRLGRAIRAVAQNPEAARLLGINVRRVFALTFALGAALAGLA----GVLLAPITG 201 (272)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHC
T ss_conf 4189999999999999999999983950456847633989998859988898799989999999999----999999865
Q ss_pred ---------HHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf ---------99999998520--898999999999999999999999999579818999999999999999980424
Q gi|254780539|r 205 ---------ITPGATAKLMS--KSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSKQ 269 (273)
Q Consensus 205 ---------v~Paa~A~~~~--~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~ 269 (273)
..++.++-.+. .|+.-.+.-+.+++..-.....+. |+ .---.+.+.+..++.++.|+.
T Consensus 202 ~~~~~~~~~~~~~i~~vvlGG~gs~~G~v~Ga~~~~~l~~~~~~~~------~~-~~~~~~~~~~li~vll~~P~G 270 (272)
T cd06582 202 VSPTMGLLLLLKAFAAVVLGGLGSIPGAVVGGLLLGLAESLAAAYL------SS-GYKDAVAFVLLILVLLVRPQG 270 (272)
T ss_pred CCCCCHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHHHHHHHHHH------HH-HHHHHHHHHHHHHHHHHCCCC
T ss_conf 7985037899888782036898856999999999999999999851------49-999999999999999974899
No 21
>cd06574 TM_PBP1_branched-chain-AA_like Transmembrane subunit (TM) of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters which are involved in the uptake of branched-chain amino acids (AAs), as well as TMs of transporters involved in the uptake of monosaccharides including ribose, galactose, and arabinose. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. This group includes Escherichia coli LivM and LivH, two TMs which heterodimerize to form the translocation pathway of the E. coli branched-chain AA LIV-1/LS transporter. This transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBP
Probab=97.47 E-value=0.0059 Score=34.88 Aligned_cols=38 Identities=18% Similarity=0.082 Sum_probs=31.0
Q ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88788872468899871787104677999999999999
Q gi|254780539|r 153 WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVI 190 (273)
Q Consensus 153 ~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~ 190 (273)
-|++....-|||.||..|+|+++++..-+.+-+.....
T Consensus 146 G~~lrAvg~n~~aA~~~GInv~r~~~~af~isg~lagl 183 (266)
T cd06574 146 GLAMRATGDNPDMARSLGINVDRTRILGLVISNALAAL 183 (266)
T ss_pred HHHHEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 48541343887999986997578887899999999999
No 22
>cd06581 TM_PBP1_LivM_like Transmembrane subunit (TM) of Escherichia coli LivM and related proteins. LivM is one of two TMs of the E. coli LIV-1/LS transporter, a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of branched-chain amino acids (AAs). These types of transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. E. coli LivM forms a heterodimer with another TM, LivH, to generate the transmembrane pore. LivH is not included in this subgroup. The LIV-1/LS transporter is comprised of two TMs (LivM and LivH), two ABCs (LivG and LivF), and one of two alternative PBPs, LivJ (LIV-BP) or LivK (LS-BP). In addition to transpo
Probab=97.44 E-value=0.0065 Score=34.65 Aligned_cols=132 Identities=17% Similarity=0.135 Sum_probs=76.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-H---HHHHHHH
Q ss_conf 02700013578876799999999-----8887888724688998717871046779999999999999-9---9989999
Q gi|254780539|r 129 SMSRSDTIQVLIITFSVACIVYM-----KWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIG-F---QTVGILL 199 (273)
Q Consensus 129 ~i~~~di~~~~~~~~i~~~~~~~-----~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~-v---~~vG~ll 199 (273)
..+....+.......+.....++ +-|++....-|||.||..|+|+++.+..-+.+.+.....+ + ...|..-
T Consensus 119 ~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~irAvg~n~~aA~~~GInv~rv~~~~f~isg~laglaG~l~~~~~~~~~ 198 (268)
T cd06581 119 SSPLAFYYLVLAVLLLVLLLLRRLVRSPFGRALRAIRENEVAAEALGINVTRYKLLAFALSAALAGLAGALYAHYLGFVS 198 (268)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 32279999999999999999999986136635887532859999779689999999999999999999999998716618
Q ss_pred H---HHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9---99999999999852--089899999999999999999999999957981899999999999999998042
Q gi|254780539|r 200 V---IATVITPGATAKLM--SKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSK 268 (273)
Q Consensus 200 v---~allv~Paa~A~~~--~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~ 268 (273)
. .......+.++-.+ -.|.+-.+.-+.+++........+.+.+. -.+.+.+.++++++.|+
T Consensus 199 p~~~g~~~~~~~~~~~vlGG~gsi~Ga~iG~lilg~~~~~~~~~~~~~~--------~~~~~~ili~vll~rP~ 264 (268)
T cd06581 199 PESFGFALSIELLLMVVLGGLGSLLGPVLGAALLVLLPELLRSLGPGLR--------LLVFGLLLILVVLFLPR 264 (268)
T ss_pred HHHHHHHHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHCCC
T ss_conf 0130189999999886154887659999999999999999998607899--------99999999999998599
No 23
>cd06579 TM_PBP1_transp_AraH_like Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to ge
Probab=97.42 E-value=0.007 Score=34.46 Aligned_cols=38 Identities=21% Similarity=0.184 Sum_probs=30.9
Q ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 88788872468899871787104677999999999999
Q gi|254780539|r 153 WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVI 190 (273)
Q Consensus 153 ~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~ 190 (273)
-|++....=|||.||+.|+|+++++..-+.+-+.....
T Consensus 142 G~~lrAv~~n~~~A~~~Gi~v~r~~~~af~is~~lagl 179 (263)
T cd06579 142 GRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGL 179 (263)
T ss_pred CCHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 11044313189999983998689654899898999999
No 24
>PRK10740 branched-chain amino acid transporter permease subunit LivH; Reviewed
Probab=97.21 E-value=0.012 Score=33.11 Aligned_cols=134 Identities=15% Similarity=0.195 Sum_probs=71.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 0027000135788767999999998-----88788872468899871787104677999999999999999989999---
Q gi|254780539|r 128 LSMSRSDTIQVLIITFSVACIVYMK-----WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILL--- 199 (273)
Q Consensus 128 l~i~~~di~~~~~~~~i~~~~~~~~-----~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~ll--- 199 (273)
..++..++............+.++. -|.+....-|||.|++.|+|+++++..-..+-+.....+=-..+...
T Consensus 151 ~~~~~~~l~~~~v~~~~~~~l~l~l~rT~~G~a~RAv~~n~~~A~~~GIn~~rv~~~af~i~~~laglaG~l~a~~~~~i 230 (308)
T PRK10740 151 ASITTMQAVIWIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVI 230 (308)
T ss_pred EEEHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 33219999999999999999999997283968999996678899890988999999999999999999999998774365
Q ss_pred --HHHHH-HHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf --99999-9999999852--089899999999999999999999999957981899999999999999998042
Q gi|254780539|r 200 --VIATV-ITPGATAKLM--SKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSK 268 (273)
Q Consensus 200 --v~all-v~Paa~A~~~--~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~ 268 (273)
..+.. ...+..+-.+ -.|++-.+.-+.++|..-.....+++ ++ .--.+...+..+.+++.|+
T Consensus 231 ~P~~g~~~~~~~f~~vvlGGlGs~~Gaivgal~lg~~e~~~~~~~~------~~-~~~~~~~~llilvLl~rP~ 297 (308)
T PRK10740 231 NPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLS------TE-YKDVVSFALLILVLLVMPT 297 (308)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCC------HH-HHHHHHHHHHHHHHHHCCC
T ss_conf 8432489999998962137877489999999999999999998623------78-9999999999999998599
No 25
>COG4120 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=97.17 E-value=0.013 Score=32.89 Aligned_cols=243 Identities=13% Similarity=0.107 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH---HCCCCHHH---HHHHHHHHHHHHHHHHHCCC
Q ss_conf 9999999999987--77999999658996324899999-9999998---31441456---89999999999998631024
Q gi|254780539|r 17 AIWMSTLIGCVCG--LLSAYLILKGWSSIGNGISHAIF-PGIVVCH---RLNIPLSV---GATISGMLATGIMVKIKETT 87 (273)
Q Consensus 17 all~~~li~~~~~--~lG~~~v~r~~s~~~~alsH~~l-~Giala~---~l~~~~~~---ga~~~~ll~~~li~~l~~~~ 87 (273)
.++..+-.|...+ .+|+++-.|=.-|=. --.+.++ .|.+.+. ..|++|+. .++..+-++.....++..|.
T Consensus 5 ~l~~aleqgLi~~~v~LGvyisFRiLnFPD-LTvdGsfpLGaAv~a~li~~G~nP~~at~~a~~AG~~aG~it~~l~~k~ 83 (293)
T COG4120 5 ILIGALEQGLIFAFVALGVYISFRILNFPD-LTVDGSFPLGAAVAATLIAAGVNPFLATLVAMVAGAAAGMITGLLNVKF 83 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHEEEECCCCC-CCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999998999999997861355406887-5315751050999999998168779999999998789899999999722
Q ss_pred CCCHHHHHHHH-HHHHHHHHHHHHHHHC----CCCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Q ss_conf 65115689999-9999999999752110----2224211211531002700013578876799999999888-----788
Q gi|254780539|r 88 KLREDVAIAVV-YIIFYSFAMFMLSLSP----SAVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWK-----DFV 157 (273)
Q Consensus 88 ~~~~d~~igi~-~~~~~algvllis~~~----~~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r-----~l~ 157 (273)
|++. -.-|+. +....+.-.-.+.+.. ++.++.+.+.++-..-.|..-.....+..++...++++.| .+.
T Consensus 84 kI~~-LLAgIL~M~alySVNLrIMgrpNl~ll~~~ti~~~l~~~~~~~~~~~pli~~vlvii~~~~v~~fl~t~~Glalr 162 (293)
T COG4120 84 KILT-LLAGILTMIALYSVNLRIMGRPNLPLLGEDTIFTPLPFDGLLDYLLRPLILVVLVIIAKLLVIRFLKTDLGLALR 162 (293)
T ss_pred CHHH-HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 2877-999999999999888998558996536898633535545662257787999999999999999997345362210
Q ss_pred HHHCCHHHHHHCCCCCHHHHHHHHHH----HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHH-----CCHH
Q ss_conf 87246889987178710467799999----999999999998---------99999999999999998520-----8989
Q gi|254780539|r 158 LLFFDERHAHSVGINVKLLKMLFFSL----LTITIVIGFQTV---------GILLVIATVITPGATAKLMS-----KSFG 219 (273)
Q Consensus 158 ~~sfD~~~A~~~Gi~v~~~~~l~l~l----~al~v~~~v~~v---------G~llv~allv~Paa~A~~~~-----~~~~ 219 (273)
...++||.|+++|+|+.++++.=+.+ +++.-+...|.= |++. + +.+|..++ ++-.
T Consensus 163 AtG~N~~Ma~a~Gi~t~~~~~~Gl~lSNalvAl~GAL~AQ~~GfADVsmGiG~iV-v------GLAavIIGe~i~~~r~~ 235 (293)
T COG4120 163 ATGDNPDMARAQGINTERYTILGLALSNALVALAGALFAQTNGFADVSMGIGTIV-V------GLAAVIIGETIFGSRRL 235 (293)
T ss_pred CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCHHH-H------HHHHHHHHHHHHHHHHH
T ss_conf 1279877999839872568999899988899985668887436530025744245-4------56799977988745589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999999579818999999999999999980424
Q gi|254780539|r 220 TYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSKQ 269 (273)
Q Consensus 220 ~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~ 269 (273)
+.-..+..+|.+.=-.-..+.....++|+-. -++.+.+-.+++..-++|
T Consensus 236 ~~~lla~viGsI~Yr~~i~~~L~~Gl~~sdL-klitallv~i~L~lp~~k 284 (293)
T COG4120 236 LLALLAVVIGSILYRFAIALALSSGLDASDL-KLITALLVAIALILPKLK 284 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999859986777-899999999999708888
No 26
>pfam02653 BPD_transp_2 Branched-chain amino acid transport system / permease component. This is a large family mainly comprising high-affinity branched-chain amino acid transporter proteins such as E. coli LivH and LivM, both of which are form the LIV-I transport system. Also found with in this family are proteins from the galactose transport system permease and a ribose transport system.
Probab=97.05 E-value=0.018 Score=32.18 Aligned_cols=193 Identities=18% Similarity=0.130 Sum_probs=91.9
Q ss_pred HHHHHHHHHHH--HHH----HCCCCHHH---HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH---
Q ss_conf 48999999999--998----31441456---8999999999999863102465115689999999999999975211---
Q gi|254780539|r 46 GISHAIFPGIV--VCH----RLNIPLSV---GATISGMLATGIMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLS--- 113 (273)
Q Consensus 46 alsH~~l~Gia--la~----~l~~~~~~---ga~~~~ll~~~li~~l~~~~~~~~d~~igi~~~~~~algvllis~~--- 113 (273)
-++|..+.+.. .+. ..+.++.. .+...+.+...+..++..|.+.++- ...........+.......
T Consensus 29 n~a~g~~~~lgay~~~~l~~~~~~~~~~~~~~a~~~~~~~g~i~~~~~~r~~~~~~--~~tl~~~~~~~~~~~~~~~~~~ 106 (267)
T pfam02653 29 NLGVGGFMALGAYVAALLLALGGSNLWLALLAGLLVGAAVGLLNGLLVVRLKVPEV--IVTLLLNFILRGLTLFLLTGIL 106 (267)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH--HHHHHHHHHHHHHHHHHHHCCC
T ss_conf 57999999999999999999805308999999999999999974586765214299--9999999999999999986355
Q ss_pred C--CCCC-CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 0--2224-2112115310027000135788767999999998-----887888724688998717871046779999999
Q gi|254780539|r 114 P--SAVY-VENIFLGNTLSMSRSDTIQVLIITFSVACIVYMK-----WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLT 185 (273)
Q Consensus 114 ~--~~~~-l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~-----~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~a 185 (273)
+ ...+ ........-...++.+.+..............+. -|.+....-|||.||..|+|+++++..-+.+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~T~~G~~lrAv~~n~~aA~~~GI~~~~~~~~~f~is~ 186 (267)
T pfam02653 107 GGPAGTSTIVDLLGFPGLFLSFGFGVIFLLALLLALLVWLLLRRTRFGRALRAVGENPRAARYAGINVKRTKILAFVLSG 186 (267)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 78877555532554200211257999999999999999999995888469999966599998869988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
Q ss_conf 999999999899999999----------999999998520--898999999999999999999999999579818
Q gi|254780539|r 186 ITIVIGFQTVGILLVIAT----------VITPGATAKLMS--KSFGTYLVSSSLLGATSSFLGSYISYFLDCSPG 248 (273)
Q Consensus 186 l~v~~~v~~vG~llv~al----------lv~Paa~A~~~~--~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g 248 (273)
.....+ |.++..-. ...++.++-.++ .|+.-.+.-+.+++.+....-. +.+.|+.
T Consensus 187 ~lagla----G~l~~~~~~~~~p~~~~~~~~~~~~~~viGG~gs~~G~~~ga~~lg~~~~~~~~----~~g~~~~ 253 (267)
T pfam02653 187 ALAGLA----GALLVLSTGSADPNAGLGLGFDAIAAVVLGGAGSPIGAIVGALIIGLLQSLGLT----LLGIPPE 253 (267)
T ss_pred HHHHHH----HHHHHHHHCCCCCCCCHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHH----HCCCCHH
T ss_conf 999999----999998835648784276998977510168999629999999999999999999----8299889
No 27
>PRK09699 D-allose transporter subunit; Provisional
Probab=96.95 E-value=0.016 Score=32.46 Aligned_cols=72 Identities=15% Similarity=0.211 Sum_probs=44.4
Q ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2112115310027000135788767999999--998887888724688998717871046779999999999999
Q gi|254780539|r 119 VENIFLGNTLSMSRSDTIQVLIITFSVACIV--YMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIG 191 (273)
Q Consensus 119 l~~~LfG~il~i~~~di~~~~~~~~i~~~~~--~~~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~ 191 (273)
...+.-|++..++..-++. ..+..+...++ ..+-|++....=|||-||..|+|+++++..-+.+.++....+
T Consensus 164 ~~~~~~~~~~giP~~~~i~-~~~~~v~~~ll~~T~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~~y~lsG~~a~lA 237 (325)
T PRK09699 164 FVNFFAASVIGIPVPVIFS-LIVALILWFLTTRMRLGRNIYALGGNKNSAFYSGIDVKFHILVVFIISGVCAGLA 237 (325)
T ss_pred HHHHHCCCCCCCHHHHHHH-HHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHCCCCHHEEEEHHHHHHHHHHHH
T ss_conf 9998623213552999999-9999999999821814103446578999998848871340443389878999999
No 28
>COG1172 AraH Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism]
Probab=96.46 E-value=0.05 Score=29.64 Aligned_cols=182 Identities=16% Similarity=0.107 Sum_probs=83.9
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCCHHH-CCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHH
Q ss_conf 99863102465115689999999999999975211022-2421121-1531002700013578876799999-9998887
Q gi|254780539|r 79 IMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSPSA-VYVENIF-LGNTLSMSRSDTIQVLIITFSVACI-VYMKWKD 155 (273)
Q Consensus 79 li~~l~~~~~~~~d~~igi~~~~~~algvllis~~~~~-~~l~~~L-fG~il~i~~~di~~~~~~~~i~~~~-~~~~~r~ 155 (273)
+-.++-.+.|.++=.++=..+...-++...+..-.+.+ .+...++ .|++..++..-++.+.........+ -..+-|.
T Consensus 108 iNG~lv~~~~ip~fI~TLgt~~i~rGl~l~~t~G~~i~~~~~~~~~g~~~~~GiP~~~~i~i~~~~~~~~~l~rT~~Gr~ 187 (316)
T COG1172 108 INGLLVARLRIPPFIATLGTMFILRGLALLLTGGRPISLPDAFAWLGSGRILGIPVPVIIFIVVAALFWLLLRRTRFGRS 187 (316)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 89899998178829998889999999998870992677978999843585428709999999999999999845601478
Q ss_pred HHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHC--------C
Q ss_conf 888724688998717871046779999999999999999899999999----------9999999985208--------9
Q gi|254780539|r 156 FVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIAT----------VITPGATAKLMSK--------S 217 (273)
Q Consensus 156 l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~al----------lv~Paa~A~~~~~--------~ 217 (273)
+....=|||-||..|+|+++++..-+.+.++....+ |.++..-+ .-+|+.+|-.+.- +
T Consensus 188 iyAvG~N~~AA~~sGI~v~rv~i~~y~isG~lAaia----Gi~~~~~~~s~~~~~g~~~eL~aIAAvViGGtsL~GG~Gs 263 (316)
T COG1172 188 IYAVGGNEEAARLSGIPVRRVKIAAYVLSGLLAALA----GILLAARLGSAQPNAGVGYELDAIAAVVIGGTSLAGGRGS 263 (316)
T ss_pred EEEECCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC
T ss_conf 989789899999849881224424689999999999----9999999658485645454888889754177476688404
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999999999999999999999999579818999999999999999980424
Q gi|254780539|r 218 FGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSKQ 269 (273)
Q Consensus 218 ~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~ 269 (273)
..-.+.-+.+++.+..-. ...+.|+--.-+.....+.....+...++
T Consensus 264 v~Gt~iGalil~~l~ngl-----~l~~v~~~~q~~i~G~iil~av~~~~~~~ 310 (316)
T COG1172 264 VIGTLLGALILGVLQNGL-----NLLGVSSYWQQIIKGLIILLAVALDGRRR 310 (316)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 599999999999999889-----99299889999999999999999999998
No 29
>PRK11301 livM leucine/isoleucine/valine transporter permease subunit; Provisional
Probab=96.32 E-value=0.061 Score=29.13 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=62.7
Q ss_pred HHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 88878887246889987178710467799999999999999998999999999-99999998520898999999999999
Q gi|254780539|r 152 KWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATV-ITPGATAKLMSKSFGTYLVSSSLLGA 230 (273)
Q Consensus 152 ~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~all-v~Paa~A~~~~~~~~~~~~~s~~~g~ 230 (273)
+-|.+..+-=||+-|++.|+|+.+++..-+.+-+..... .|.+.-.-.- +-|.. ++-.....+..-+++|-
T Consensus 286 ~GRal~AIRedE~AA~alGInv~r~KL~AFalsA~~AGl----AGaLyA~~~g~IsP~~----F~~~~S~~iL~mVVlGG 357 (416)
T PRK11301 286 LGRAWEALREDEIACRSLGLNPTRIKLSAFTIGAAFAGF----AGTFFAARQGFVSPES----FTFIESAFILAIVVLGG 357 (416)
T ss_pred HHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHCCEECCCC----CCHHHHHHHHHHHEECC
T ss_conf 858999996279999985977699999999999999999----9999998816348330----65999999797513327
Q ss_pred HHHHHHHHHHHHH----C---CCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9999999999995----7---9818999999999999999980424
Q gi|254780539|r 231 TSSFLGSYISYFL----D---CSPGGIIVIIETSLFLLCLFFFSKQ 269 (273)
Q Consensus 231 ~~~~~G~~lS~~~----~---lp~g~~Iv~~~~~~f~~~~~~~~~~ 269 (273)
..+..|-.+.-.. + -.-+..--++.+.+..+..++.|+-
T Consensus 358 ~Gs~~G~ilGA~il~~LpE~lr~~~~~r~lvfG~lLvl~mlf~P~G 403 (416)
T PRK11301 358 MGSQLGVILAAILLVVLPELMRDFNEYRMLMFGLLMVLMMIWRPQG 403 (416)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 6451999999999999999997656559999999999999986998
No 30
>PRK11285 araH L-arabinose transporter permease protein; Provisional
Probab=96.01 E-value=0.089 Score=28.20 Aligned_cols=71 Identities=11% Similarity=0.068 Sum_probs=43.6
Q ss_pred CCHHHCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 211211531002700013578876799999--999888788872468899871787104677999999999999
Q gi|254780539|r 119 VENIFLGNTLSMSRSDTIQVLIITFSVACI--VYMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVI 190 (273)
Q Consensus 119 l~~~LfG~il~i~~~di~~~~~~~~i~~~~--~~~~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~ 190 (273)
...+-.|++..++..-++.. ....+...+ ...+-|++....=|||-||..|+|+++++..-+.+.++....
T Consensus 167 ~~~~~~~~~~gip~~~~i~i-i~~~~~~~~l~~T~~Gr~lyAvG~N~~AA~~sGI~v~r~~i~ay~isG~lagl 239 (327)
T PRK11285 167 FFALGYASFFGVPAPIWLTV-ACFVVFGFLLNKTVFGRNTLAIGGNEEAARLAGVPVVRTKIIIFVLQGLVSAL 239 (327)
T ss_pred HHHHHCCCCCCCCHHHHHHH-HHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99851384237548999999-99999999996340545998816989999881898337401999999999999
No 31
>COG0559 LivH Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism]
Probab=95.66 E-value=0.13 Score=27.36 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=56.2
Q ss_pred HHCCCCCCCHHHCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHHHCCCCCHHHHHHHH
Q ss_conf 1102224211211531-----002700013578876799999999888-----788872468899871787104677999
Q gi|254780539|r 112 LSPSAVYVENIFLGNT-----LSMSRSDTIQVLIITFSVACIVYMKWK-----DFVLLFFDERHAHSVGINVKLLKMLFF 181 (273)
Q Consensus 112 ~~~~~~~l~~~LfG~i-----l~i~~~di~~~~~~~~i~~~~~~~~~r-----~l~~~sfD~~~A~~~Gi~v~~~~~l~l 181 (273)
+.+++.....++.|+. ..+++.++..............++.+| ++...+-||+.|+..|+|+++.+.+-.
T Consensus 120 ~g~~~~~~p~~~~~~~~~~g~~~~~~~~l~~~~~s~~~~~~l~~~l~rT~~G~a~RA~~~n~~~A~l~GInv~~v~~~tf 199 (297)
T COG0559 120 FGPRPVGLPPALSGSVRFLGGVTLPTYRLFIIAVSLALLLGLWLLLRRTRLGRALRAVAENRKMAALLGINVERVIALTF 199 (297)
T ss_pred ECCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHHHHH
T ss_conf 58766667714214421032001069999999999999999999999837718898760489899880986899999999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q gi|254780539|r 182 SLLTITIVIG 191 (273)
Q Consensus 182 ~l~al~v~~~ 191 (273)
.+-+.....+
T Consensus 200 ~lg~~lAgla 209 (297)
T COG0559 200 ALGGALAGLA 209 (297)
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 32
>cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Probab=95.20 E-value=0.18 Score=26.45 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=63.3
Q ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--------HHHHHHHHHHHHHH-HCCHHHH
Q ss_conf 887888724688998717871046779999999999999--999899999--------99999999999852-0898999
Q gi|254780539|r 153 WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIG--FQTVGILLV--------IATVITPGATAKLM-SKSFGTY 221 (273)
Q Consensus 153 ~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~--v~~vG~llv--------~allv~Paa~A~~~-~~~~~~~ 221 (273)
-|++....-|||.||..|+|++++++.-+.+.+.....+ +...|..-. .++. +.++-.+ .+++...
T Consensus 118 G~~lravG~n~~aA~~~Gi~v~~~~~~a~~isg~laGlaG~~~~~~~~~~~~~~~~~g~g~~---aia~~ilg~~~p~g~ 194 (234)
T cd06580 118 GLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLAGAYLVLGVQGRFTEGMSAGYGFI---AIAVALLGRWNPLGI 194 (234)
T ss_pred HHEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHH---HHHHHHHHCCCHHHH
T ss_conf 74500331889999887988889999999999999999999999865025776776661499---999999979988999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9999999999999999999995798189999999
Q gi|254780539|r 222 LVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIE 255 (273)
Q Consensus 222 ~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~ 255 (273)
+..+.++|.+-. .+..+....+.|+.-.-.+..
T Consensus 195 ~~~al~fg~l~~-g~~~lq~~~~ip~~~~~~i~~ 227 (234)
T cd06580 195 LLAALLFGALEA-GGIALQRSGGVPSELVQVLPG 227 (234)
T ss_pred HHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHH
T ss_conf 999999999999-999997617999999999999
No 33
>TIGR03409 urea_trans_UrtB urea ABC transporter, permease protein UrtB. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=95.07 E-value=0.2 Score=26.24 Aligned_cols=130 Identities=16% Similarity=0.197 Sum_probs=69.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00270001357887679999999988-----8788872468899871787104677999999999999999989999999
Q gi|254780539|r 128 LSMSRSDTIQVLIITFSVACIVYMKW-----KDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIA 202 (273)
Q Consensus 128 l~i~~~di~~~~~~~~i~~~~~~~~~-----r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~a 202 (273)
...++++++......+++..+..+.+ |.+....-|||-|++.|+|+++++..-..+-+.....+ |.+...-
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~l~rT~~G~~lrAi~~n~~aA~~~GInv~r~~~~af~is~~lagla----G~l~a~~ 213 (291)
T TIGR03409 138 LSLPYNRLFIIVLALAVLLALALLLYRTRLGLRVRAVTQNRVMAAALGINTRRVDALTFALGSGIAGVA----GVALTLI 213 (291)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_conf 223199999999999999999999837856588888724799999859989999999999999999999----9999988
Q ss_pred ---------HHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCC
Q ss_conf ---------999999999852--089899999999999999999999999957981899999999999999998042
Q gi|254780539|r 203 ---------TVITPGATAKLM--SKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSK 268 (273)
Q Consensus 203 ---------llv~Paa~A~~~--~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~ 268 (273)
....++..+-.+ -.|++-.+.-+.+++....+...+.+..+ --.+...+..+.+++.|+
T Consensus 214 ~~v~p~~g~~~~~~~~~~~vlGG~gs~~Gai~Ga~~lg~l~~~~~~~~~~~~-------~~~~~~~~li~vLl~rP~ 283 (291)
T TIGR03409 214 GNVGPTLGQGYIVDSFLVVVFGGVGSLWGTVVAAFGLGVANKILEYFTGASL-------AKVLVLVLIILFLQWRPQ 283 (291)
T ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHCCC
T ss_conf 6589752399999999999974656458999999999999999998702899-------999999999999998699
No 34
>PRK09478 mglC beta-methylgalactoside transporter inner membrane component; Provisional
Probab=94.58 E-value=0.27 Score=25.49 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8887888724688998717871046779999999999999
Q gi|254780539|r 152 KWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIG 191 (273)
Q Consensus 152 ~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~ 191 (273)
+-|++....=|||-||..|+|+++++..-+.+.++....+
T Consensus 206 ~Gr~lyAvG~N~~AA~~sGI~v~r~~i~~y~lsG~~aala 245 (336)
T PRK09478 206 FGKNIFAIGGNPEAAKVSGVNVALNLLMIYALSGVFYAFG 245 (336)
T ss_pred HHEEEEECCCCHHHHHHHCCCCEEEEHHHHHHHHHHHHHH
T ss_conf 4336346459899998828984013308998889999999
No 35
>PRK09512 rbsC ribose ABC transporter permease protein; Reviewed
Probab=94.54 E-value=0.27 Score=25.44 Aligned_cols=136 Identities=21% Similarity=0.283 Sum_probs=68.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 15310027000135788767999999--9988878887246889987178710467799999999999999998999999
Q gi|254780539|r 124 LGNTLSMSRSDTIQVLIITFSVACIV--YMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVI 201 (273)
Q Consensus 124 fG~il~i~~~di~~~~~~~~i~~~~~--~~~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~ 201 (273)
.|+...++.. ++....+..+...++ ..+-|++....=|||-||..|+|+++++..-+.+.+.....+ |.+...
T Consensus 166 ~g~~~gip~~-~~i~i~v~ii~~~~l~~T~~Gr~lyAiG~N~~AA~~sGI~v~r~~i~~f~lsg~lagla----Gil~~~ 240 (321)
T PRK09512 166 IGRPLGVPTP-VWIMAIVFAAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLAALA----GIIEVA 240 (321)
T ss_pred CCCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHCCCCCEEEEEHHHHHHHHHHHH----HHHHHH
T ss_conf 3651565699-99999999999999986688748879779899999809885148874799999999999----999999
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------HHHHHHHH-----------HHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999852089899999999999999------99999999-----------995798189999999999999999
Q gi|254780539|r 202 ATVITPGATAKLMSKSFGTYLVSSSLLGATS------SFLGSYIS-----------YFLDCSPGGIIVIIETSLFLLCLF 264 (273)
Q Consensus 202 allv~Paa~A~~~~~~~~~~~~~s~~~g~~~------~~~G~~lS-----------~~~~lp~g~~Iv~~~~~~f~~~~~ 264 (273)
-. +.+. -...+++.-..+.++.+|-.+ ++.|..+. ...+.|+.-- -.+.+.+.+++..
T Consensus 241 ~~---~s~~-p~~g~~~~l~aIaAvviGG~sl~GG~G~v~Gt~lGal~l~~i~~gl~~~gv~~~~q-~~v~G~ili~AV~ 315 (321)
T PRK09512 241 RL---SSAQ-PTAGTGYELDAIAAVVLGGTSLAGGKGRIVGTLIGALILGFLNNALNLLGVSSYYQ-MIVKAVVILLAVL 315 (321)
T ss_pred HH---CCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHEE
T ss_conf 70---7888-43344347999999998043656980774999999999999999998819988999-9999999743146
Q ss_pred HCCCC
Q ss_conf 80424
Q gi|254780539|r 265 FFSKQ 269 (273)
Q Consensus 265 ~~~~~ 269 (273)
..+||
T Consensus 316 id~~~ 320 (321)
T PRK09512 316 VDNKK 320 (321)
T ss_pred EECCC
T ss_conf 50467
No 36
>TIGR03408 urea_trans_UrtC urea ABC transporter, permease protein UrtC. Members of this protein family are ABC transporter permease proteins associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.41 E-value=0.29 Score=25.27 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=54.3
Q ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH------------HCCHH
Q ss_conf 8878887246889987178710467799999999999999998999999999-9999999852------------08989
Q gi|254780539|r 153 WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATV-ITPGATAKLM------------SKSFG 219 (273)
Q Consensus 153 ~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~all-v~Paa~A~~~------------~~~~~ 219 (273)
.|.+....=|||.|++.|+|+++++..-+.+-+..... .|.+...-.- +-|....... ..|..
T Consensus 192 G~~lrAvr~ne~aa~~lGinv~r~k~~aF~isa~lagl----aG~l~a~~~~~v~P~~f~~~~~i~~~~~vvlGG~Gs~~ 267 (313)
T TIGR03408 192 GRVLIAIRDAENRVRFLGYDPANYKVFVFVLSAGIAGI----AGALYVPQVGIISPSEMGIVPSIEMVIWVAVGGRGTLI 267 (313)
T ss_pred HHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHCCEECHHHCCHHHHHHHHHHEEECCCCCCH
T ss_conf 89888576166999882882999999999999999999----99999987063483436599999988830456885318
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999999999999999999999579818999999999999999980424
Q gi|254780539|r 220 TYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSKQ 269 (273)
Q Consensus 220 ~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~ 269 (273)
-.+.-+.+++..-.+. +.+ .|.. -..+.+.+..+..++.|+-
T Consensus 268 GavlGa~ll~~l~~~~----~~~--~~~~--~~~i~g~ili~ill~~P~G 309 (313)
T TIGR03408 268 GAVLGALLVNYAKTFF----SEA--FPEA--WLYILGALFVVVVLFLPKG 309 (313)
T ss_pred HHHHHHHHHHHHHHHH----HHH--HHHH--HHHHHHHHHHHHHHHCCCC
T ss_conf 9999999999999999----986--5669--9999999999999991897
No 37
>COG4603 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=92.65 E-value=0.59 Score=23.53 Aligned_cols=202 Identities=13% Similarity=0.163 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-HHHHHHHH---HHCCCC-CCCHHHCCCCCCCCH---H--HH-
Q ss_conf 6899999999999986310246511568999999999-99999752---110222-421121153100270---0--01-
Q gi|254780539|r 67 VGATISGMLATGIMVKIKETTKLREDVAIAVVYIIFY-SFAMFMLS---LSPSAV-YVENIFLGNTLSMSR---S--DT- 135 (273)
Q Consensus 67 ~ga~~~~ll~~~li~~l~~~~~~~~d~~igi~~~~~~-algvllis---~~~~~~-~l~~~LfG~il~i~~---~--di- 135 (273)
+.+..++.+-+....+++-+.+.+ |....+++.--. -+...++. .+|... ..++--+.+-...++ + .+
T Consensus 120 l~g~~~G~~wa~ipg~Lka~f~~n-EVIttiMlNyIa~~l~~~lV~~~~~~p~~~~~~~T~~i~~~a~lp~~~~~~~~~~ 198 (356)
T COG4603 120 LAGAAGGGLWALIPGLLKARFGVN-EVITTIMLNYIAVYLLNYLVEGPLRDPAGTNFPQTRPIPDAARLPSLFLASGRLH 198 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCHHH
T ss_conf 999999999999999999991862-9999999999999999999807245887678866825751113775542111289
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH-
Q ss_conf 3578876799999999888-----7888724688998717871046779999999999--9999998999999999999-
Q gi|254780539|r 136 IQVLIITFSVACIVYMKWK-----DFVLLFFDERHAHSVGINVKLLKMLFFSLLTITI--VIGFQTVGILLVIATVITP- 207 (273)
Q Consensus 136 ~~~~~~~~i~~~~~~~~~r-----~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v--~~~v~~vG~llv~allv~P- 207 (273)
+-..+.....+....+.+| |+.....+|+-||-.|+++++....-+.+-+... ...+...|..--..--..|
T Consensus 199 ~g~lial~~av~~~~ll~kT~~G~~lr~~G~sp~Aa~yaGi~~~r~i~~sm~iSGalAGLaG~~ev~G~~~~~~~~~~~G 278 (356)
T COG4603 199 WGFLLALAAAVLVWFLLKKTVFGYELRVVGLSPRAARYAGISVKRTIFLSMLISGALAGLAGAVEVLGAFGRLRPSISPG 278 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCCCCCCC
T ss_conf 99999999999999999981477588872488038998798746899999999999999988999815201000366777
Q ss_pred ----HHHHHHH-HCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ----9999852-08989999999999999999999999995798189999999999999999804244
Q gi|254780539|r 208 ----GATAKLM-SKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSKQY 270 (273)
Q Consensus 208 ----aa~A~~~-~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~~ 270 (273)
+.+.-.+ .+++--.++.|.++|.+ ...|-......+.|+.-..++....++++..-+.-+|+
T Consensus 279 ~Gf~gI~Vallg~~~P~giv~asll~~~l-~~G~~~~~~~~g~P~~lv~v~qg~ii~~~~~~~~~~~~ 345 (356)
T COG4603 279 YGFDGIAVALLGRNNPLGIVFASLLFGFL-YIGAEAAQLNLGVPKELVLVFQGLIILFLLASYVLRRY 345 (356)
T ss_pred CCHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 67289999998068837899999999999-98689876404999899999999999999999999998
No 38
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=88.03 E-value=1.6 Score=21.12 Aligned_cols=40 Identities=23% Similarity=0.059 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999985208-9899999999999999999999
Q gi|254780539|r 199 LVIATVITPGATAKLMSK-SFGTYLVSSSLLGATSSFLGSY 238 (273)
Q Consensus 199 lv~allv~Paa~A~~~~~-~~~~~~~~s~~~g~~~~~~G~~ 238 (273)
++-++++.|=.++.--.. --.+.++.+...+++|+.+=+.
T Consensus 185 ~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 185 LVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred HHHHHHHHHHHHHHCCHHHCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 99999982025642552631857999999999986231037
No 39
>PRK11618 inner membrane ABC transporter permease protein YjfF; Provisional
Probab=86.58 E-value=1.9 Score=20.64 Aligned_cols=40 Identities=10% Similarity=0.110 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8887888724688998717871046779999999999999
Q gi|254780539|r 152 KWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIG 191 (273)
Q Consensus 152 ~~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~ 191 (273)
+-|++....=|||-||..|+|+++++..-+.+.++....+
T Consensus 185 ~GR~lyAvG~N~~AA~~sGI~v~r~~i~~fvisG~~aglA 224 (317)
T PRK11618 185 FGNNVYAIGGNATSANLMGVPVRRTTIRIYALSGFLAALA 224 (317)
T ss_pred HHCEEEEECCCHHHHHHCCCCCHHEEEHHHHHHHHHHHHH
T ss_conf 0066888679899999949982342207999999999999
No 40
>COG4177 LivM ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism]
Probab=84.88 E-value=2.3 Score=20.15 Aligned_cols=109 Identities=21% Similarity=0.318 Sum_probs=60.6
Q ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 887888724688998717871046779999999999999999899999999-9999999985208989999999999999
Q gi|254780539|r 153 WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIAT-VITPGATAKLMSKSFGTYLVSSSLLGAT 231 (273)
Q Consensus 153 ~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~al-lv~Paa~A~~~~~~~~~~~~~s~~~g~~ 231 (273)
-|.+..+-=||+-+|+.|+|+..++..-+++-+..... .|.+...-. .+-|...-..++- ....-..+|-.
T Consensus 183 Gr~l~AiRedE~~a~alG~n~~~~Kl~aF~isa~~AGi----AGaL~a~~~~~v~p~~f~~~~S~----~~l~~vvlGG~ 254 (314)
T COG4177 183 GRALRAIREDEIAARALGINVTRYKLLAFVISAAIAGI----AGALYALYLGFVSPESFSFTLSI----EVLAMVVLGGA 254 (314)
T ss_pred CHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHH----HHHHHHHHHCEECCHHCCHHHHH----HHHHHHHHCCC
T ss_conf 33686661578999985998899999999999999999----99999998150380025399999----99999998476
Q ss_pred HHHHH----HHHHHHH-----CCC--CHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 99999----9999995-----798--18999999999999999980424
Q gi|254780539|r 232 SSFLG----SYISYFL-----DCS--PGGIIVIIETSLFLLCLFFFSKQ 269 (273)
Q Consensus 232 ~~~~G----~~lS~~~-----~lp--~g~~Iv~~~~~~f~~~~~~~~~~ 269 (273)
.+..| -.+-... +.. +...-..+.+.++.++.++.||.
T Consensus 255 Gt~~G~v~Ga~l~~~~~~~l~~~~~~~~~~~~~v~G~llvlv~l~~P~G 303 (314)
T COG4177 255 GTLFGALLGAVLVVLLKELLRGLLPRPVEYRLLVFGLLLVLVVLFRPRG 303 (314)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 4318899999999999999976245315899999999999999983776
No 41
>COG1079 Uncharacterized ABC-type transport system, permease component [General function prediction only]
Probab=83.28 E-value=2.7 Score=19.75 Aligned_cols=204 Identities=13% Similarity=0.112 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHH---HHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf 99998777999999658996324899999999999831---4414568---99999999999986310246511568999
Q gi|254780539|r 24 IGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRL---NIPLSVG---ATISGMLATGIMVKIKETTKLREDVAIAV 97 (273)
Q Consensus 24 i~~~~~~lG~~~v~r~~s~~~~alsH~~l~Giala~~l---~~~~~~g---a~~~~ll~~~li~~l~~~~~~~~d~~igi 97 (273)
.-+.++-+|-...-|- -.+--++----+.|...+... ..++++| +.+.+.+.+++-.+.+.+-|.++ ...|+
T Consensus 19 tPLllaaLG~l~sERs-GVlNIglEG~M~~gAf~~~~~~~~t~spw~gl~~a~l~g~l~~ll~a~~ti~l~~nq-iisG~ 96 (304)
T COG1079 19 TPLLLAALGGLFSERS-GVLNIGLEGIMLLGAFSGALFAYGTGSPWLGLLAAALVGALFGLLHAFLTIKLRANQ-IISGL 96 (304)
T ss_pred HHHHHHHHHHHHHHHH-CEEEECHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHH
T ss_conf 9999999988898872-214541314899999999999981466899999999999999999999997614561-22489
Q ss_pred HHHHH-HHHHHHHHH-HHCC-CCCCCH---------HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHH
Q ss_conf 99999-999999752-1102-224211---------211531002700013578876799999999888-----788872
Q gi|254780539|r 98 VYIIF-YSFAMFMLS-LSPS-AVYVEN---------IFLGNTLSMSRSDTIQVLIITFSVACIVYMKWK-----DFVLLF 160 (273)
Q Consensus 98 ~~~~~-~algvllis-~~~~-~~~l~~---------~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r-----~l~~~s 160 (273)
..... .++...+.+ ..+. ..+.+. -..|+. ....| +........+....++.|| ++....
T Consensus 97 alnl~a~Glt~fl~~~~~~~~~~~~~~~~~p~l~~ip~~g~~--~~~~~-~~~y~ai~lv~~~~~~L~rTr~GL~lravG 173 (304)
T COG1079 97 ALNLLASGLTAFLGQSIFGQPGTTFQPIDIPGLSDIPVIGPA--LFGQS-PLVYLAILLVALVWYVLYRTRFGLRLRAVG 173 (304)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCH--HCCCC-HHHHHHHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 999999899999999986368887776677632347644411--02557-999999999999999973052466999826
Q ss_pred CCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH---------HHHHHHH-HCCHHHHHHHHHHH
Q ss_conf 468899871787104677999999999999999989999999999--99---------9999852-08989999999999
Q gi|254780539|r 161 FDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVI--TP---------GATAKLM-SKSFGTYLVSSSLL 228 (273)
Q Consensus 161 fD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv--~P---------aa~A~~~-~~~~~~~~~~s~~~ 228 (273)
=||+-+++.|+||.++|+.=...-+.... .-|..+..+.-- .| |.++..+ .+++...+..|.++
T Consensus 174 E~P~aad~~Gi~V~r~R~~av~~sG~laG----laGa~Lsl~~~~~f~~~m~aGrGfIAlA~~ifa~W~Pl~~~~~allF 249 (304)
T COG1079 174 ENPAAADAMGINVYRYRYLAVLVSGALAG----LAGAYLSLAYSGQFVEGMTAGRGFIALAAVIFARWRPLGALVAALLF 249 (304)
T ss_pred CCHHHHHHCCCCHHHHHHHHHHHHHHHHH----HHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 98267886798756788999999999987----53521355504564446667721999999999478739999999999
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780539|r 229 GATSSFLG 236 (273)
Q Consensus 229 g~~~~~~G 236 (273)
|.+....=
T Consensus 250 g~~~~l~~ 257 (304)
T COG1079 250 GFFEALAI 257 (304)
T ss_pred HHHHHHHH
T ss_conf 99999998
No 42
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=53.05 E-value=14 Score=15.76 Aligned_cols=21 Identities=14% Similarity=0.021 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999999
Q gi|254780539|r 220 TYLVSSSLLGATSSFLGSYIS 240 (273)
Q Consensus 220 ~~~~~s~~~g~~~~~~G~~lS 240 (273)
+.+..+...+++++.+-+.+-
T Consensus 206 ~~l~~~l~vavlssviPY~Le 226 (293)
T PRK10532 206 SILPLGLAVAILSTALPYSLE 226 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999878999999
No 43
>pfam02038 ATP1G1_PLM_MAT8 ATP1G1/PLM/MAT8 family.
Probab=49.21 E-value=16 Score=15.40 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=21.9
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 463257999999999999999877799999965
Q gi|254780539|r 7 EPFTYNYMNTAIWMSTLIGCVCGLLSAYLILKG 39 (273)
Q Consensus 7 ~~~~~~f~~~all~~~li~~~~~~lG~~~v~r~ 39 (273)
|||.|+| ++-=+.|++.+.+.-++|..+++.+
T Consensus 6 dpF~YDy-~tLRigGLi~a~vlfi~Gi~iils~ 37 (51)
T pfam02038 6 DPFYYDY-ETLRIGGLIFAGVLFIVGIIIILSG 37 (51)
T ss_pred CCCCCCH-HHHHHCHHHHHHHHHHHHHHHHHCC
T ss_conf 8862445-8985100599999999999999858
No 44
>TIGR00907 2A0304 amino acid permease; InterPro: IPR004756 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related , , . These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment.; GO: 0006865 amino acid transport, 0016021 integral to membrane.
Probab=46.78 E-value=18 Score=15.18 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=66.9
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHCCHHHHH-----------HCCCCCHH--HHHHHHH---HHHH
Q ss_conf 53100270001357887679999999--98887888724688998-----------71787104--6779999---9999
Q gi|254780539|r 125 GNTLSMSRSDTIQVLIITFSVACIVY--MKWKDFVLLFFDERHAH-----------SVGINVKL--LKMLFFS---LLTI 186 (273)
Q Consensus 125 G~il~i~~~di~~~~~~~~i~~~~~~--~~~r~l~~~sfD~~~A~-----------~~Gi~v~~--~~~l~l~---l~al 186 (273)
||=..-...-+.............-. ..++-=...+|-+|.+- -.++|.+. ++..+.+ ++.+
T Consensus 307 g~~fGsG~G~I~~~~~~~~~~~f~~i~~~t~~sR~~~AFsRD~~LP~S~~W~~vn~~~~vPlnAvwl~~~~~i~~~L~~L 386 (494)
T TIGR00907 307 GNKFGSGAGAIFLLLLVLVVVFFCAITSMTANSRMIYAFSRDGGLPFSRLWSKVNPRTQVPLNAVWLSAVLVIVIGLLGL 386 (494)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 55678874589999999998886444222476899888764377775632054347678628999999999999986677
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHH----HHH--HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH--------
Q ss_conf 999999998999999999---999999----985--208989999999999999999999999995798189--------
Q gi|254780539|r 187 TIVIGFQTVGILLVIATV---ITPGAT----AKL--MSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGG-------- 249 (273)
Q Consensus 187 ~v~~~v~~vG~llv~all---v~Paa~----A~~--~~~~~~~~~~~s~~~g~~~~~~G~~lS~~~~lp~g~-------- 249 (273)
.-..++|++=..=+++|. ++|-++ +|+ ..|.+.++=..+.....+...==...+-.+-.||--
T Consensus 387 gSs~Af~A~~s~c~~~L~~sY~IPIi~~~~~gR~l~~~~GP~~lGk~g~~VN~~Av~W~~f~~VlF~fP~~~PVT~~NmN 466 (494)
T TIGR00907 387 GSSTAFQAIFSVCTVALDVSYVIPIICKLVLGRNLIIEPGPFLLGKYGFFVNAVAVAWTVFISVLFLFPPVLPVTPENMN 466 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 89999999999999999987688999997632144234898764157789999999999998766426788998876443
Q ss_pred -HHHHHHHH-HHHHHHHHCCCCC
Q ss_conf -99999999-9999999804244
Q gi|254780539|r 250 -IIVIIETS-LFLLCLFFFSKQY 270 (273)
Q Consensus 250 -~Iv~~~~~-~f~~~~~~~~~~~ 270 (273)
++|++.+. ++-+..++.+=||
T Consensus 467 Y~~Vv~~gvl~~sl~yW~~~gRk 489 (494)
T TIGR00907 467 YAVVVFAGVLIISLVYWLVKGRK 489 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHCCEE
T ss_conf 27899999999999998788803
No 45
>PRK09395 actP acetate permease; Provisional
Probab=39.47 E-value=23 Score=14.52 Aligned_cols=188 Identities=16% Similarity=0.184 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HCCCCH---HHHHHHHHHHHHHHHH-HHHCCCC----------CCHH-----HHHH
Q ss_conf 96589963248999999999998-314414---5689999999999998-6310246----------5115-----6899
Q gi|254780539|r 37 LKGWSSIGNGISHAIFPGIVVCH-RLNIPL---SVGATISGMLATGIMV-KIKETTK----------LRED-----VAIA 96 (273)
Q Consensus 37 ~r~~s~~~~alsH~~l~Giala~-~l~~~~---~~ga~~~~ll~~~li~-~l~~~~~----------~~~d-----~~ig 96 (273)
...++..+|=+|-+++.|++... ..|++- .+|......+..+++. .+++.++ .+++ ++++
T Consensus 75 ~nglAiagd~mSAasfLGi~G~i~~~G~dg~~y~iG~~~g~~l~l~liA~~lR~~G~yT~pD~l~~R~~~~~vR~~aav~ 154 (551)
T PRK09395 75 QNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSIGFLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACG 154 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHH
T ss_conf 99999999999999998899999984866999999999999999999999998769906799999982785188999999
Q ss_pred HHH-------HHHHHHHHHHHHHHCCCCCC----------CHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999-------99999999975211022242----------1121153100270001357887679999999988878887
Q gi|254780539|r 97 VVY-------IIFYSFAMFMLSLSPSAVYV----------ENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLL 159 (273)
Q Consensus 97 i~~-------~~~~algvllis~~~~~~~l----------~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~ 159 (273)
... ..+.+.|.++-...+-+.+. .-..+|-...++|.|+.+..+..............++- .
T Consensus 155 ~lvv~~~Yl~aQmvG~G~L~~~lfGi~y~~avii~g~vvi~Yv~~GGM~AvtwtqiiQ~vlLl~g~~~l~i~vl~~~G-~ 233 (551)
T PRK09395 155 SLVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAVLLLSGATFMAFMVMKHVG-F 233 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC-C
T ss_conf 999999999999999999999984898188999999999875312870210599999999999999999999999968-8
Q ss_pred HCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH----HHHHHHHH
Q ss_conf 24688998717871046779999999999999999899999999999999998520898----99999999
Q gi|254780539|r 160 FFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSF----GTYLVSSS 226 (273)
Q Consensus 160 sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~----~~~~~~s~ 226 (273)
.+++-.++....+++..+..--.-. ..-....-..|.-+..+-.-.|+..-|.++-+- |+...++.
T Consensus 234 ~~~~~~~~a~~~~~~~~~~~~pg~~-~~~p~~~isl~lal~lGtaGlPHIl~RF~Tv~~~k~ARkSv~~A~ 303 (551)
T PRK09395 234 SFENLFSEAVAVHPKGLAIMGPGGL-VKDPISALSLGLALMFGTAGLPHILMRFFTVSDAKEARKSVFYAT 303 (551)
T ss_pred CHHHHHHHHHHCCCCCHHHHCCCCC-CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 8889998887517540244078865-347799999999999987448689999871688899989999999
No 46
>COG4214 XylH ABC-type xylose transport system, permease component [Carbohydrate transport and metabolism]
Probab=39.29 E-value=23 Score=14.50 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=30.9
Q ss_pred HHHHHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 887888724688998717871046779999999999999
Q gi|254780539|r 153 WKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIG 191 (273)
Q Consensus 153 ~r~l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~ 191 (273)
-|+.-...=+||-||..|+|+++..+..+...++.++.+
T Consensus 266 GR~VyAiGGN~eAA~LSGInv~r~t~~vF~~mGvl~AiA 304 (394)
T COG4214 266 GRRVYAIGGNPEAARLSGINVERVTLLVFVIMGVLAAIA 304 (394)
T ss_pred EEEEEEECCCHHHHHHCCCCEEEHHHHHHHHHHHHHHHH
T ss_conf 048987269878898648750104689999978999999
No 47
>PRK00191 tatA twin arginine translocase protein A; Provisional
Probab=32.80 E-value=27 Score=14.13 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHH
Q ss_conf 9999999988878887246889987178710467
Q gi|254780539|r 144 SVACIVYMKWKDFVLLFFDERHAHSVGINVKLLK 177 (273)
Q Consensus 144 i~~~~~~~~~r~l~~~sfD~~~A~~~Gi~v~~~~ 177 (273)
++++++++-.|++ ||.||+.|...|.++
T Consensus 12 ~vvvllLFGaKKL------PdlARslGks~RifK 39 (107)
T PRK00191 12 VLLIIVLFGAKKL------PDAARSIGRSMRIFK 39 (107)
T ss_pred HHHHHHHHCCCCC------HHHHHHHHHHHHHHH
T ss_conf 9999999765303------699998858999999
No 48
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component; InterPro: IPR004700 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane.
Probab=32.37 E-value=30 Score=13.85 Aligned_cols=214 Identities=16% Similarity=0.171 Sum_probs=101.8
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCC-----CHHHHHHHHHHHHHHHH
Q ss_conf 463257999999999999999877799999965899632489999999999983-144-----14568999999999999
Q gi|254780539|r 7 EPFTYNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHR-LNI-----PLSVGATISGMLATGIM 80 (273)
Q Consensus 7 ~~~~~~f~~~all~~~li~~~~~~lG~~~v~r~~s~~~~alsH~~l~Giala~~-l~~-----~~~~ga~~~~ll~~~li 80 (273)
..+++-|.-||+++|+++|...|=+-+=++ .|..+-.. +|| -...-+.+.++++..+.
T Consensus 23 s~Lde~q~hRPliaCTL~G~iLGDlkTG~i----------------~GGtlEL~alGwmn~G~a~~Pd~alAs~isTilv 86 (271)
T TIGR00822 23 SVLDEFQLHRPLIACTLVGLILGDLKTGII----------------LGGTLELIALGWMNVGAAQAPDPALASIISTILV 86 (271)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 898635664506877899888854677778----------------7579999996122457558862789999999988
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHHH---HHHHHHHHCC-CCCCCH-HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8631024651156899999999999---9997521102-224211-2115310027000135788767999999998887
Q gi|254780539|r 81 VKIKETTKLREDVAIAVVYIIFYSF---AMFMLSLSPS-AVYVEN-IFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKD 155 (273)
Q Consensus 81 ~~l~~~~~~~~d~~igi~~~~~~al---gvllis~~~~-~~~l~~-~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~ 155 (273)
.. ++.+-...|++-...+.+- -++..+.+-- .+..+. -=-||.-++++=++-.+.+.+.-+...-...-
T Consensus 87 i~----~~q~i~~gIalalPlaaagQ~lt~f~rtitv~F~h~ADk~A~~a~~~ai~~lh~t~l~~qA~rvaipAl~v~-- 160 (271)
T TIGR00822 87 IS----GHQSIGTGIALALPLAAAGQVLTIFVRTITVLFQHAADKAAKEANLAAISLLHVTALLIQALRVAIPALIVA-- 160 (271)
T ss_pred HH----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_conf 84----464078899999999998799999999999999999988554305367889999999999999999999999--
Q ss_pred HHHHHCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHHHH
Q ss_conf 8887246889987178710467799999999999999998999-9999999999999852-0898999999999999999
Q gi|254780539|r 156 FVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGIL-LVIATVITPGATAKLM-SKSFGTYLVSSSLLGATSS 233 (273)
Q Consensus 156 l~~~sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~l-lv~allv~Paa~A~~~-~~~~~~~~~~s~~~g~~~~ 233 (273)
+..+-|+-.+-..-+|-.. +-+.+..|-+ .++++ +..=|.. .+.+.+.+
T Consensus 161 -l~~~~~~vqa~l~AiP~~~-------------T~Gl~iAGGiivvVGy----amvlrmM~~~yl~Pff----------- 211 (271)
T TIGR00822 161 -LFVSQSAVQALLKAIPEVV-------------TKGLQIAGGIIVVVGY----AMVLRMMFVAYLMPFF----------- 211 (271)
T ss_pred -HHHHHHHHHHHHHHHHHHH-------------HCCCCCCCCHHHHHHH----HHHHHHHCCHHHHHHH-----------
T ss_conf -9988999999985218887-------------1641005732026879----9999973101223899-----------
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCC--CCC
Q ss_conf 999999999579818999999999999999980424--457
Q gi|254780539|r 234 FLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSKQ--YRT 272 (273)
Q Consensus 234 ~~G~~lS~~~~lp~g~~Iv~~~~~~f~~~~~~~~~~--~r~ 272 (273)
+.|+...-|.|..-=.. +.+....+++.-.+.+|+ +|.
T Consensus 212 ~~GFL~~~y~~fsll~~-gavg~~~a~~Y~ql~~k~sa~r~ 251 (271)
T TIGR00822 212 YLGFLLAAYTDFSLLAF-GAVGGVLALLYIQLNPKSSARRA 251 (271)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999998988999-99999999999985334552057
No 49
>pfam01566 Nramp Natural resistance-associated macrophage protein. The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functional related proteins defined by a conserved hydrophobic core of ten transmembrane domains. This family of membrane proteins are divalent cation transporters. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. By controlling divalent cation concentrations Nramp1 may regulate the interphagosomal replication of bacteria. Mutations in Nramp1 may genetically predispose an individual to susceptibility to diseases including leprosy and tuberculosis conversely this might however provide protection form rheumatoid arthritis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others it is expressed at high levels in the inte
Probab=29.72 E-value=34 Score=13.59 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
Q ss_conf 9999998314414568999999999999863102465115689
Q gi|254780539|r 53 PGIVVCHRLNIPLSVGATISGMLATGIMVKIKETTKLREDVAI 95 (273)
Q Consensus 53 ~Giala~~l~~~~~~ga~~~~ll~~~li~~l~~~~~~~~d~~i 95 (273)
.+.++..+++.+...+..+.+.....+....+++.| .-|..+
T Consensus 79 ~a~~l~ll~gi~~~~~~~i~~~~~~~il~~~~~~y~-~~E~~~ 120 (365)
T pfam01566 79 GAIALNLLFGIPLYIGVVITAVLVLLLLFLQRGGYR-RLERVI 120 (365)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHH
T ss_conf 999999985997689999999999999999817707-899999
No 50
>COG3610 Uncharacterized conserved protein [Function unknown]
Probab=26.41 E-value=39 Score=13.25 Aligned_cols=32 Identities=9% Similarity=0.123 Sum_probs=19.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 14414568999999999999863102465115
Q gi|254780539|r 61 LNIPLSVGATISGMLATGIMVKIKETTKLRED 92 (273)
Q Consensus 61 l~~~~~~ga~~~~ll~~~li~~l~~~~~~~~d 92 (273)
+|.+.....++.+.....+-..++|+.|.+..
T Consensus 52 ~g~~~~~atfiaa~~vg~lg~~~sr~~k~p~~ 83 (156)
T COG3610 52 FGFSIVVATFIAAFVVGCLGNLLSRRYKTPAK 83 (156)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 17719999999999999999999998528704
No 51
>TIGR01937 nqrB NADH:ubiquinone oxidoreductase, Na(+)-translocating, B subunit; InterPro: IPR010966 This entry represents the NqrB subunit of the six-protein (NqrA to NqrF), membrane-associated Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria . The Nqr complex catalyses the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of sodium ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol. Both the NqrB and NqrC subunits contain a FMN cofactor that is covalently attached by a phosphate group to a threonine residue .; GO: 0010181 FMN binding, 0016655 oxidoreductase activity acting on NADH or NADPH quinone or similar compound as acceptor, 0006118 electron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=26.02 E-value=39 Score=13.21 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHH----HCCCCCCHHHHHH-----HHHHHHHHHHHHHH
Q ss_conf 632489999999999983144---14568999999999999863----1024651156899-----99999999999975
Q gi|254780539|r 43 IGNGISHAIFPGIVVCHRLNI---PLSVGATISGMLATGIMVKI----KETTKLREDVAIA-----VVYIIFYSFAMFML 110 (273)
Q Consensus 43 ~~~alsH~~l~Giala~~l~~---~~~~ga~~~~ll~~~li~~l----~~~~~~~~d~~ig-----i~~~~~~algvlli 110 (273)
+||.-.=+.+.|.++=.+.++ -...+..+..+..+.+-..+ ..+++-..++... =...+++|.|++++
T Consensus 364 ~GEtSTlA~liGa~~l~~t~IASWri~a~~~~G~~~~~~lFn~Is~l~~Gq~G~~~~a~f~~p~~~hlv~GGfAfGlvFM 443 (508)
T TIGR01937 364 LGETSTLAILIGAALLILTGIASWRIMAGVMIGMIAMSTLFNAISVLIVGQSGSEANAMFFIPWYWHLVLGGFAFGLVFM 443 (508)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 02589999999899999985888999999999999999999898776506788778743447278999860478746765
Q ss_pred HHHCC---CCCCCHHHCCCCCC
Q ss_conf 21102---22421121153100
Q gi|254780539|r 111 SLSPS---AVYVENIFLGNTLS 129 (273)
Q Consensus 111 s~~~~---~~~l~~~LfG~il~ 129 (273)
.-.|- ..+.-.|+||-...
T Consensus 444 ATDPVss~~t~~GKW~yG~liG 465 (508)
T TIGR01937 444 ATDPVSSSFTKKGKWIYGALIG 465 (508)
T ss_pred CCCCCCCCHHCCCCHHHHHHHH
T ss_conf 0687760002032057789999
No 52
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=24.19 E-value=43 Score=13.01 Aligned_cols=117 Identities=17% Similarity=0.167 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHH---HHHHHHHHHHHHHH-HHHHCCCCCC-HH--------------HHH
Q ss_conf 99658996324899999999999831-44145---68999999999999-8631024651-15--------------689
Q gi|254780539|r 36 ILKGWSSIGNGISHAIFPGIVVCHRL-NIPLS---VGATISGMLATGIM-VKIKETTKLR-ED--------------VAI 95 (273)
Q Consensus 36 v~r~~s~~~~alsH~~l~Giala~~l-~~~~~---~ga~~~~ll~~~li-~~l~~~~~~~-~d--------------~~i 95 (273)
..++++.-||=+|-+++.|++....+ |.+-+ .|-...-.+..+++ ..+++.+|.. .| +++
T Consensus 46 fqNGlAiagdyMSaASflGiag~I~~~GYdG~~Y~iG~~~Gy~i~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~ 125 (529)
T COG4147 46 FQNGLAIAGDYMSAASFLGIAGLIFISGYDGLIYSIGWTGGYPILLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAI 125 (529)
T ss_pred CCCCEEHHCCCCCHHHHHCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHH
T ss_conf 20452211141466766055675454266439999999989999999977999863886668999998715315699999
Q ss_pred HHHHHH-------HHHHHHHHHHHHCCCCCC----------CHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999-------999999975211022242----------112115310027000135788767999999998
Q gi|254780539|r 96 AVVYII-------FYSFAMFMLSLSPSAVYV----------ENIFLGNTLSMSRSDTIQVLIITFSVACIVYMK 152 (273)
Q Consensus 96 gi~~~~-------~~algvllis~~~~~~~l----------~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~ 152 (273)
+..... .-+.|.++..+.+-+.++ .-.++|....+||.++..........+......
T Consensus 126 ~ti~vs~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i 199 (529)
T COG4147 126 GTIIVSFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMI 199 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999705999999939983441255767898888765513623999999999999999999999
No 53
>PRK11272 hypothetical protein; Provisional
Probab=22.22 E-value=47 Score=12.78 Aligned_cols=42 Identities=5% Similarity=-0.014 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 999999999999-957981899999999999999998042445
Q gi|254780539|r 230 ATSSFLGSYISY-FLDCSPGGIIVIIETSLFLLCLFFFSKQYR 271 (273)
Q Consensus 230 ~~~~~~G~~lS~-~~~lp~g~~Iv~~~~~~f~~~~~~~~~~~r 271 (273)
...-+.|..+++ ..|.+.++.-.+=...+..-..+...+|++
T Consensus 249 ~l~Pv~a~l~g~~~LgE~l~~~~~iG~~lIl~gv~lv~~~k~~ 291 (293)
T PRK11272 249 YVNPVVAVLLGTGLGGERLSPIEWLALGVIVFAVVLVTLGKYL 291 (293)
T ss_pred HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 8999999999999939988699999999999999999272105
No 54
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=22.12 E-value=47 Score=12.77 Aligned_cols=38 Identities=8% Similarity=0.046 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCHHHHH
Q ss_conf 76799999999888788872468899871787104677
Q gi|254780539|r 141 ITFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKM 178 (273)
Q Consensus 141 ~~~i~~~~~~~~~r~l~~~sfD~~~A~~~Gi~v~~~~~ 178 (273)
.......+...+-|+...--=|-|.-+.+|.++-..-+
T Consensus 173 ~~~a~F~fl~~lireivkDi~di~GD~~~g~~TlPi~~ 210 (297)
T PRK12872 173 LLVAAFAFLKNFVNTIVFDIKDIEGDRNSGLKTLPIIL 210 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCEECHHH
T ss_conf 99999999999999997157513154866983148352
No 55
>TIGR02840 spore_YtaF putative sporulation protein YtaF; InterPro: IPR014205 This entry represents YtaF, which represents a protein family identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome. The phylogenetic profile of the members matches the subset of the Firmicutes capable of forming endospores. These species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, and Geobacillus kaustophilus..
Probab=21.47 E-value=48 Score=12.69 Aligned_cols=36 Identities=14% Similarity=0.041 Sum_probs=19.8
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999985208989999999999999999999999995
Q gi|254780539|r 208 GATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFL 243 (273)
Q Consensus 208 aa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~lS~~~ 243 (273)
+.-|-+..=++-.+...+.+.+.+..+.|..+.+..
T Consensus 150 GiGAsl~G~~p~~~~~~~~~~S~~fv~~G~~lG~~~ 185 (215)
T TIGR02840 150 GIGASLLGLNPLATSILVAVMSFIFVSLGLKLGKKV 185 (215)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899988611789999999999999999999886788
No 56
>pfam01299 Lamp Lysosome-associated membrane glycoprotein (Lamp).
Probab=21.26 E-value=49 Score=12.66 Aligned_cols=24 Identities=17% Similarity=0.465 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 456899999999999986310246
Q gi|254780539|r 65 LSVGATISGMLATGIMVKIKETTK 88 (273)
Q Consensus 65 ~~~ga~~~~ll~~~li~~l~~~~~ 88 (273)
.-+|+.+.+++...++.++-.|+|
T Consensus 274 IaVG~aL~gLi~iVliaYlIgRrR 297 (305)
T pfam01299 274 IAVGAALAGLILIVLIAYLIGRRR 297 (305)
T ss_pred HHHHHHHHHHHHHHHHHEEEEECC
T ss_conf 547679999999843422785204
No 57
>PRK09354 recA recombinase A; Provisional
Probab=21.15 E-value=49 Score=12.65 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=14.2
Q ss_pred HCCHHHHHHCCCCCHHH
Q ss_conf 24688998717871046
Q gi|254780539|r 160 FFDERHAHSVGINVKLL 176 (273)
Q Consensus 160 sfD~~~A~~~Gi~v~~~ 176 (273)
++||++|+..|+++..+
T Consensus 99 ald~~~a~~lGVd~d~l 115 (350)
T PRK09354 99 ALDPVYAKKLGVDIDNL 115 (350)
T ss_pred CCCHHHHHHCCCCHHHE
T ss_conf 27988999849771571
No 58
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=20.96 E-value=49 Score=12.68 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=14.2
Q ss_pred HHCCHHHHHHCCCCCHHH
Q ss_conf 724688998717871046
Q gi|254780539|r 159 LFFDERHAHSVGINVKLL 176 (273)
Q Consensus 159 ~sfD~~~A~~~Gi~v~~~ 176 (273)
-++||++|+..|+++..+
T Consensus 93 ~a~d~~~a~~lGVD~~~l 110 (325)
T cd00983 93 HALDPVYAKKLGVDLDNL 110 (325)
T ss_pred HCCCHHHHHHCCCCHHHE
T ss_conf 425989999809984675
Done!