HHSEARCH alignment of GI: 254780539 and SCOP domain: d1l7va_

Alignment
>d1l7va_ f.22.1.1 (A:) ABC transporter involved in vitamin B12 uptake, BtuC {Escherichia coli [TaxId: 562]}
Probab=99.87  E-value=1.4e-19  Score=126.62  Aligned_cols=241  Identities=14%  Similarity=0.162  Sum_probs=173.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999999877799999965899632--------4899999999999831441------4568999999999999863
Q gi|254780539|r   18 IWMSTLIGCVCGLLSAYLILKGWSSIGN--------GISHAIFPGIVVCHRLNIP------LSVGATISGMLATGIMVKI   83 (273)
Q Consensus        18 ll~~~li~~~~~~lG~~~v~r~~s~~~~--------alsH~~l~Giala~~l~~~------~~~ga~~~~ll~~~li~~l   83 (273)
                      .+++.++|...+.-|...    |....+        +++..+-.|++++..++..      ....++..+..........
T Consensus        60 ~l~a~l~Ga~La~sG~~l----Q~~~rNpLA~P~ilGissGA~l~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (324)
T d1l7va_          60 TLAVLLVGAALAISGAVM----QALFENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLCAIAGALIITLILLRF  135 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHH----HHHHTCTTCCTTTTTHHHHHHHHHHHHHHTSCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH----HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999----9981798878367875428899999999723322578899999999999999999998


Q ss_pred             HCCCCCCHH-HHHHHHHHHHHHHHHH-HHHHHC-C-CCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             102465115-6899999999999999-752110-2-22421121153100270001357887679999999988878887
Q gi|254780539|r   84 KETTKLRED-VAIAVVYIIFYSFAMF-MLSLSP-S-AVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLL  159 (273)
Q Consensus        84 ~~~~~~~~d-~~igi~~~~~~algvl-lis~~~-~-~~~l~~~LfG~il~i~~~di~~~~~~~~i~~~~~~~~~r~l~~~  159 (273)
                      ++++..+.. ...|+..+..++...- +....+ . ..+...|+.|+....+|+|++...+...+.. ...+..|+++..
T Consensus       136 ~~~~~~~~~liL~Gi~i~~~~~a~~~~l~~~~~~~~~~~~~~w~~Gs~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~~L  214 (324)
T d1l7va_         136 ARRHLSTSRLLLAGVALGIICSALMTWAIYFSTSVDLRQLMYWMMGGFGGVDWRQSWLMLALIPVLL-WICCQSRPMNML  214 (324)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHTCCCTTCCGGGHHHHHHHHHHHH-HHHHCHHHHHHH
T ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHH
T ss_conf             6146881367788999999999999999995479999999999765004453203577887518999-999998446655


Q ss_pred             HCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             24688998717871046779999999999999999899999999999999998520898999999999999999999999
Q gi|254780539|r  160 FFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYI  239 (273)
Q Consensus       160 sfD~~~A~~~Gi~v~~~~~l~l~l~al~v~~~v~~vG~llv~allv~Paa~A~~~~~~~~~~~~~s~~~g~~~~~~G~~l  239 (273)
                      +.|||.|++.|+|+++++...+...++.++.++..+|.+-+.++ +.|+.+.+...+++|+.++.|.++|......+..+
T Consensus       215 ~lgd~~A~sLGv~v~~~r~~~l~~~~ll~a~~va~~G~I~FvGL-i~PhiaR~l~g~~~~~~lp~s~l~Ga~lll~aD~l  293 (324)
T d1l7va_         215 ALGEISARQLGLPLWFWRNVLVAATGWMVGVSVALAGAIGFIGL-VIPHILRLCGLTDHRVLLPGCALAGASALLLADIV  293 (324)
T ss_dssp             HHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSS-HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf             30368887068666777799999999999999972364455587-57999998607775179999999999999999999


Q ss_pred             HHHH----CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             9995----7981899999999999999998
Q gi|254780539|r  240 SYFL----DCSPGGIIVIIETSLFLLCLFF  265 (273)
Q Consensus       240 S~~~----~lp~g~~Iv~~~~~~f~~~~~~  265 (273)
                      +...    ++|.|- ++.+.+..|++.++.
T Consensus       294 ~r~i~~p~eiPvGv-italiG~P~fi~Ll~  322 (324)
T d1l7va_         294 ARLALAAAELPIGV-VTATLGAPVFIWLLL  322 (324)
T ss_dssp             HHHSCSSSCCCHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCCCHHHH-HHHHHHHHHHHHHHH
T ss_conf             97604665632999-999999999999998


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: ABC transporter involved in vitamin B12 uptake, BtuC
superfamily: ABC transporter involved in vitamin B12 uptake, BtuC
family: ABC transporter involved in vitamin B12 uptake, BtuC
domain: ABC transporter involved in vitamin B12 uptake, BtuC
species: Escherichia coli [TaxId: 562]