RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780539|ref|YP_003064952.1| ABC transporter, membrane
spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62]
(273 letters)
>gnl|CDD|109985 pfam00950, ABC-3, ABC 3 transport family.
Length = 258
Score = 196 bits (500), Expect = 6e-51
Identities = 94/256 (36%), Positives = 159/256 (62%), Gaps = 1/256 (0%)
Query: 11 YNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIPLSVGAT 70
Y +M A+ S L+ CG+L ++L+L+ S +G+ +SHA+ PG+ + L I +GA
Sbjct: 2 YEFMQRALLASILVSLACGILGSFLVLRRQSLMGDALSHAVLPGVALAFFLGINPLIGAF 61
Query: 71 ISGMLATGIMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSP-SAVYVENIFLGNTLS 129
+ G++A + ++ ++L+ED AI +V+ F + + ++SL SAV +++ GN L
Sbjct: 62 LFGLIAAVAIGYLRRNSRLKEDTAIGIVFSSFLALGLLLISLIKGSAVDLDHYLFGNILG 121
Query: 130 MSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITIV 189
+S+ D IQ+ IIT + ++ + WK+ +L+ FD HA +G+ V+ L +L LL +TIV
Sbjct: 122 ISQEDLIQIAIITAIILLLLLLFWKELLLITFDPDHAKVIGLPVQFLYLLLLILLALTIV 181
Query: 190 IGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGG 249
+ Q VG +LVIA +ITP ATA+L+++SF + ++ +S +G SS G +SY+ D G
Sbjct: 182 VAMQAVGAILVIALLITPAATARLLTRSFESMMLIASAIGMVSSVAGLLLSYYFDTPTGP 241
Query: 250 IIVIIETSLFLLCLFF 265
+IV+I T LFL+ F
Sbjct: 242 VIVLIATLLFLISFAF 257
>gnl|CDD|31305 COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease
components [Inorganic ion transport and metabolism].
Length = 274
Score = 174 bits (443), Expect = 2e-44
Identities = 106/266 (39%), Positives = 162/266 (60%), Gaps = 1/266 (0%)
Query: 1 MINQILEPFTYNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHR 60
M+ +LE F Y++M A+ S LIG CGLL +L+L+ S +G+ +SHA+ PG+ +
Sbjct: 1 MLELLLELFQYDFMQNALLASLLIGIACGLLGTFLVLRRMSLMGDALSHAVLPGVALGFL 60
Query: 61 LNIPLSVGATISGMLATGIMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSPS-AVYV 119
L I +GA I G+LA ++ ++ +KL+ED AI +V+ + + +LSL PS V +
Sbjct: 61 LGINPLLGAFIFGLLAALLIGYLRRRSKLKEDTAIGIVFSSGLALGLVLLSLVPSSRVDL 120
Query: 120 ENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKML 179
+ G+ L++SRSD + + II V ++ + +++ +LL FD A +G+NV+LL L
Sbjct: 121 MHYLFGDILAVSRSDLLLIAIIGALVLLLLLLFYRELLLLTFDPEFARVLGLNVRLLHYL 180
Query: 180 FFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYI 239
LL +TIV + VG LLV A +I P ATA+L++KSF L+ + L+G SS LG Y+
Sbjct: 181 LLVLLALTIVAAIKAVGALLVSALLIIPAATARLLTKSFRQMLIIAVLIGLLSSVLGLYL 240
Query: 240 SYFLDCSPGGIIVIIETSLFLLCLFF 265
SY+LD G IV+I LFLL F
Sbjct: 241 SYYLDLPSGPAIVLIAALLFLLSFLF 266
>gnl|CDD|119348 cd06550, TM_ABC_iron-siderophores_like, Transmembrane subunit (TM),
of Periplasmic Binding Protein (PBP)-dependent
ATP-Binding Cassette (ABC) transporters involved in the
uptake of siderophores, heme, vitamin B12, or the
divalent cations Mg2+ and Zn2+. PBP-dependent ABC
transporters consist of a PBP, two TMs, and two
cytoplasmic ABCs, and are mainly involved in importing
solutes from the environment. The solute is captured by
the PBP which delivers it to a gated translocation
pathway formed by the two TMs. The TMs are bundles of
alpha helices that transverse the cytoplasmic membrane
multiple times. The two ABCs bind and hydrolyze ATP and
drive the transport reaction. Each TM has a prominent
cytoplasmic loop which contacts an ABC and represents a
conserved motif. The two TMs form either a homodimer
(e.g. in the case of the BtuC subunits of the
Escherichia coli BtuCD vitamin B12 transporter), a
heterodimer (e.g. the TroC and TroD subunits of the
Treponema pallidum general transition metal transporter,
TroBCD), or a pseudo-heterodimer (e.g. the FhuB protein
of the E. coli ferrichrome transporter, FhuBC). FhuB
contains two tandem TMs which associate to form the
pseudo-heterodimer. Both FhuB TMs are found in this
hierarchy..
Length = 261
Score = 104 bits (263), Expect = 2e-23
Identities = 64/259 (24%), Positives = 113/259 (43%), Gaps = 13/259 (5%)
Query: 17 AIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVC----HRLNIPLSVGATIS 72
A+ + + +L + + S GISH G+V+ L+ +
Sbjct: 4 ALLVGAALAVSGAILQSLTRNRLASPSILGISHGALLGVVLALLLGIGLSNYALGAFAFA 63
Query: 73 GMLATGI---MVKIKETTKLREDVAIAVVYIIFYSFAMFMLSL--SPSAVYVENIFLGNT 127
G LA + ++ + + + I +V F+S + ++SL S + G+
Sbjct: 64 GALAIALLVLLLASRGGLSPSKLILIGIVLSAFFSAGVILISLLSDDSLQDLNIWLFGSI 123
Query: 128 LSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFFSLLTIT 187
L ++ D + +LII V ++ + + LL FDE A S+GINV LL++L L+ +
Sbjct: 124 LGVTWEDLLILLIILLLVLLLLLLLSRKLNLLTFDEDLAKSLGINVNLLRLLLLLLVALL 183
Query: 188 IVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFL---D 244
+V VG++L + +I P +L +S L S+LLGA LG +S L +
Sbjct: 184 VVAAVALVGVILFVG-LIAPHLARRLFGRSHRYLLPLSALLGAILLLLGDLLSRTLLPSE 242
Query: 245 CSPGGIIVIIETSLFLLCL 263
G + ++ FL L
Sbjct: 243 LPVGPVTALLGAPYFLYLL 261
>gnl|CDD|144573 pfam01032, FecCD, FecCD transport family. This is a sub-family of
bacterial binding protein-dependent transport systems
family. This Pfam entry contains the inner components of
this multicomponent transport system.
Length = 312
Score = 37.5 bits (88), Expect = 0.004
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 9/169 (5%)
Query: 67 VGATISGMLATGIMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSP--SAVYVENIFL 124
+GA ++ +L + K + LR +A V +F + +L L+ + + L
Sbjct: 109 IGALLAALLVLLLARKRGGLSPLRLILAGIAVSALFSALTSLLLLLADPEALQSILFWLL 168
Query: 125 GNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDERHAHSVGINVKLLKMLFF--- 181
G+ S SD + +L + ++ + + LL + A S+G+NV +++L
Sbjct: 169 GSLSGASWSDVLILLPLLLIGLLLLLLLARKLNLLALGDDVAKSLGVNVNRVRLLLLLLA 228
Query: 182 SLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGA 230
+LLT V VG + + +I P L+ + L S+L+GA
Sbjct: 229 ALLTAAAVA---LVGPIGFVG-LIVPHIARLLVGANHRRLLPLSALIGA 273
>gnl|CDD|34237 COG4606, CeuB, ABC-type enterochelin transport system, permease
component [Inorganic ion transport and metabolism].
Length = 321
Score = 32.1 bits (73), Expect = 0.19
Identities = 42/239 (17%), Positives = 97/239 (40%), Gaps = 15/239 (6%)
Query: 40 WSSIGNGISHAIFPGIVVCHRLNIPLSVGATISGMLATGIMVKIKETTKLREDVAIAVVY 99
+ +G +S +FP + ++ + A + + T + + I KL++ + + ++
Sbjct: 89 SAKLGILLSLLLFPSASLLIKM-----LVAFVFALAGTLLFMMILRRIKLKDVLFVPLIG 143
Query: 100 IIF----YSFAMFMLSLSPSAVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKD 155
I+F S F ++ + +L S ++L I+ +A + Y+
Sbjct: 144 IMFGGVISSITTF-IAYRFDLLQSLGAWLQGDFSGVLRGRYELLWISIPLAILAYLFADR 202
Query: 156 FVLLFFDERHAHSVGINVKLLKMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMS 215
F + E + ++G+N + + ++ + + TVG+L + +I P +
Sbjct: 203 FTIAGMGEDFSVNLGLNYNRVVNIGLFIVALITSVVVVTVGMLPFLG-LIVPNIVSLYRG 261
Query: 216 KSFGTYLVSSSLLGAT----SSFLGSYISYFLDCSPGGIIVIIETSLFLLCLFFFSKQY 270
+ L +LLGA +G I + + I+ +I +++FLL L +
Sbjct: 262 DNLRQNLPWVALLGALFVLLCDIIGRVIIFPYEIPISLILGVIGSAVFLLLLLRGRRHA 320
>gnl|CDD|30954 COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease
component [Inorganic ion transport and metabolism].
Length = 334
Score = 31.0 bits (70), Expect = 0.33
Identities = 34/184 (18%), Positives = 69/184 (37%), Gaps = 9/184 (4%)
Query: 65 LSVGATISGMLATGIMVKIKETTKLREDVAI-----AVVYIIFYSFAMFMLSLSPSAVYV 119
L + A + +LA ++ I + +F + +L L+ ++ +
Sbjct: 117 LPLAAFLGALLAALLVYLIARLRGGGLSPLRLILAGIALSALFGALTSLLLILADDSLAL 176
Query: 120 ENIFLGNTLSMSRSDTIQVLIITFSVAC---IVYMKWKDFVLLFFDERHAHSVGINVKLL 176
+ I S+ + VLI+ + ++ + +L + A S+GINV L
Sbjct: 177 QAILFWLLGSLGGATWSDVLILLPVILIGLLLLLFLSRKLNILSLGDELAKSLGINVNRL 236
Query: 177 KMLFFSLLTITIVIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLG 236
++L L ++ VG + + + P L+ L S+LLGA L
Sbjct: 237 RLLLLLLASLLTAAAVSLVGPIGFVGLIA-PHIARLLVGNDHRYLLPLSALLGALLLLLA 295
Query: 237 SYIS 240
++
Sbjct: 296 DILA 299
>gnl|CDD|38357 KOG3147, KOG3147, KOG3147, 6-phosphogluconolactonase - like protein
[Carbohydrate transport and metabolism].
Length = 252
Score = 27.2 bits (60), Expect = 5.3
Identities = 23/88 (26%), Positives = 32/88 (36%), Gaps = 11/88 (12%)
Query: 105 FAMFMLSLSPSAVYVENIFLGNTLSMSRSDTIQVLIITFSVACIVYMKWKDFVLLFFDER 164
A ++ S A+ F TL++S IQVL + W + + F DER
Sbjct: 24 LAGYIAEKSEKALKKRGRF---TLALSGGSLIQVLSKLLESPYQDDIDWSKWHIFFVDER 80
Query: 165 -----HAHSVGINVKLLKMLFFSLLTIT 187
S N L K F S + I
Sbjct: 81 VVPLDDPDS---NYGLAKRHFLSKVPIP 105
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies..
Length = 446
Score = 26.9 bits (60), Expect = 5.6
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 217 SFGTYLVSSSLLGATSSFLGSYISYFL 243
SF +LV SL G T S LGS ++ L
Sbjct: 125 SFEGFLVLHSLAGGTGSGLGSRVTELL 151
>gnl|CDD|31482 COG1291, MotA, Flagellar motor component [Cell motility and
secretion].
Length = 266
Score = 26.3 bits (58), Expect = 9.7
Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 13/81 (16%)
Query: 23 LIGCVCGLLSAYLILKGWSSIGNGISHAI---FPGIVVCHRLNIPLSVGATISGMLATGI 79
++G V GL+ A L + +G I+ A+ GI + + L P LA +
Sbjct: 159 IVGAVMGLIHALGNLDDPAELGALIAAALVGTLYGIFLAYGLFGP----------LANKL 208
Query: 80 MVKIKETTKLREDVAIAVVYI 100
K E KL+E + ++ I
Sbjct: 209 KQKSDEEVKLKEIIIEGLLAI 229
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.330 0.142 0.419
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,285,266
Number of extensions: 179570
Number of successful extensions: 825
Number of sequences better than 10.0: 1
Number of HSP's gapped: 806
Number of HSP's successfully gapped: 106
Length of query: 273
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 181
Effective length of database: 4,275,709
Effective search space: 773903329
Effective search space used: 773903329
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (25.9 bits)