RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780539|ref|YP_003064952.1| ABC transporter, membrane
spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62]
         (273 letters)



>2nq2_A Hypothetical ABC transporter permease protein HI1471;
           putative iron chelatin ABC transporter, nucleotide
           binding domain; 2.40A {Haemophilus influenzae}
           (A:94-261)
          Length = 168

 Score = 32.1 bits (73), Expect = 0.088
 Identities = 18/140 (12%), Positives = 45/140 (32%), Gaps = 7/140 (5%)

Query: 65  LSVGATISGMLATGIMVKIKETTKLREDVAIAVVYIIFYSFA------MFMLSLSPSAVY 118
           L     + G     ++         R  + + ++ +I           +  +S +   + 
Sbjct: 27  LFTSTILFGFGTLALVFLFSFKFNQRSLLMLILIGMILSGLFSALVSLLQYISDTEEKLP 86

Query: 119 VENIFLGNTLSMSRSDTIQVLIITFSVACIV-YMKWKDFVLLFFDERHAHSVGINVKLLK 177
               +L  + + S  + +    + F +   +         LL  DE+ A ++G+ +  L+
Sbjct: 87  SIVFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLDEKEAKALGVKMAPLR 146

Query: 178 MLFFSLLTITIVIGFQTVGI 197
            L   L    +       G 
Sbjct: 147 WLVIFLSGSLVACQVAISGS 166


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:234-256,A:435-732)
          Length = 321

 Score = 28.4 bits (62), Expect = 0.98
 Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 28/81 (34%)

Query: 44  GNGIS-HAIFPGIVVCHRLNIPLSVGATISGMLATGIMVKIKETTKLR----EDVAIAVV 98
            N ++      G                   M A  I+ +  E   +R    +++A  ++
Sbjct: 249 ANQLTVCGAIIGWT------------RGTGLMSANNIIAEGIEKMGVRTFSQKEMAFNLL 296

Query: 99  YIIFYSFAMFMLSLSPSAVYV 119
            +           L+P  V +
Sbjct: 297 GL-----------LTPEVVEL 306


>2qi9_A Vitamin B12 import system permease protein BTUC; inner
           membrane, membrane, transmembrane, transport, ATP-
           binding, hydrolase, nucleotide-binding, periplasm; HET:
           1PE; 2.60A {Escherichia coli} PDB: 1l7v_A* (A:)
          Length = 326

 Score = 27.7 bits (61), Expect = 1.7
 Identities = 30/232 (12%), Positives = 67/232 (28%), Gaps = 19/232 (8%)

Query: 10  TYNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIPLSVGA 69
             N +     +    G   GL++A L+ +G          AI   +++   L        
Sbjct: 81  FENPLAEPGLLGVSNGAGVGLIAAVLLGQGQLPNWALGLSAIAGALIITLILLRFARRHL 140

Query: 70  TISGMLATGIMVKIKETTKLREDVAIAVVYIIFYSFAMFMLSLSPSAVYVENIFLGNTLS 129
           + S +L                 +A   + II  +   + +  S S    +  +      
Sbjct: 141 STSRLL-----------------LAGVALGIISSALXTWAIYFSTSVDLRQLXYWXXGGF 183

Query: 130 MSRSDTIQVLIITFSVACIVYMKW-KDFVLLFFDERHAHSVGINVKLLKMLFFSLLTITI 188
                    L +      +      +    L   E  A  +G+ +   + +  +     +
Sbjct: 184 GGVDWRQSWLXLALIPVLLWISSQSRPXNXLALGEISARQLGLPLWFWRNVLVAATGWXV 243

Query: 189 VIGFQTVGILLVIATVITPGATAKLMSKSFGTYLVSSSLLGATSSFLGSYIS 240
            +     G +  I  ++ P              L   +L GA++  L   ++
Sbjct: 244 GVSVALAGAIGFIG-LVIPHILRLSGLTDHRVLLPGCALAGASALLLADIVA 294


>1vpb_A Putative modulator of DNA gyrase; BT3649, structural
          genomics, JCSG, joint center for structural genomics,
          PSI; 1.75A {Bacteroides thetaiotaomicron vpi-5482}
          (A:237-451)
          Length = 215

 Score = 26.8 bits (59), Expect = 3.0
 Identities = 9/66 (13%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 6  LEPFTYNYMNTAIWMSTLIGCVCGLLSAYLILKGWSSIGNGISHAIF-PGIVVCHRLNIP 64
          ++   Y  +   +  S L+  +   L+   + +  S + N ++  I    + +    ++ 
Sbjct: 6  VQSGKYTMVVDPMNSSRLLSPMISALNGSALQQKNSFLLNKLNEKIASDRLTLTDEPHLV 65

Query: 65 LSVGAT 70
           + GA 
Sbjct: 66 KASGAR 71


>2vak_A Sigma A; double-stranded RNA binding, RNA, viral protein;
           2.34A {Avian orthoreovirus} (A:163-423)
          Length = 261

 Score = 26.0 bits (57), Expect = 5.0
 Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 7/79 (8%)

Query: 11  YNYMNTAIWMSTLIGCVCGLLSAYLI----LKGWSSIGNGISHAIFPGIVVCHRLNIPLS 66
           +N   + I  + L   V       +     +   +            G    H LN+  +
Sbjct: 122 WNVDKSWIAAANLTAIVMACRQPPVFANQGVINQA---QNRPGFSMNGGTPVHELNLLTT 178

Query: 67  VGATISGMLATGIMVKIKE 85
               I   +  G++   K 
Sbjct: 179 AQECIRQWVMAGLVSAAKG 197


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.330    0.142    0.419 

Gapped
Lambda     K      H
   0.267   0.0508    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 1,980,996
Number of extensions: 82066
Number of successful extensions: 220
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 18
Length of query: 273
Length of database: 4,956,049
Length adjustment: 87
Effective length of query: 186
Effective length of database: 2,015,014
Effective search space: 374792604
Effective search space used: 374792604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (25.1 bits)