RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780539|ref|YP_003064952.1| ABC transporter, membrane spanning protein (iron) [Candidatus Liberibacter asiaticus str. psy62] (273 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 32.6 bits (74), Expect = 0.096 Identities = 50/301 (16%), Positives = 84/301 (27%), Gaps = 138/301 (45%) Query: 7 EPFTYNYMNTAIWMSTL--IGCVCGLLSAYLILKGWSSIGNGISHAIFPGIVVCHRLNIP 64 E F +++ ++ L IG C + +P ++P Sbjct: 290 ESF---FVSVRKAITVLFFIGVRC--------------------YEAYP------NTSLP 320 Query: 65 LSV-------G-ATISGMLA-TGIMVK-----IKETTK-LRED--VAIAVVYIIFYSFAM 107 S+ S ML+ + + + + +T L V I++V Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN----GAKN 376 Query: 108 FMLSLSPSAVYVENIFL-----GNTLSMSRSDTIQVLIITFSVACIVYMKWK-DFVLLF- 160 ++S P ++Y N+ L + L SR I FS + K F F Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSR--------IPFS-------ERKLKFSNRFL 421 Query: 161 -----FDERHAH----------------SVGINVKLLKMLFFSLLTITIVIG--FQTVG- 196 F H+H +V N K +++ + T G + + Sbjct: 422 PVASPF---HSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYD--TFD---GSDLRVLSG 473 Query: 197 -ILLVIATVIT------PGATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPGG 249 I I I T AT + LD PGG Sbjct: 474 SISERIVDCIIRLPVKWETTTQ----------------FKAT---------HILDFGPGG 508 Query: 250 I 250 Sbjct: 509 A 509 Score = 28.8 bits (64), Expect = 1.4 Identities = 31/163 (19%), Positives = 49/163 (30%), Gaps = 62/163 (38%) Query: 160 FFDE-RHAHS-----VGINVKLLKMLFFSLLTITI-VIGFQTVG--IL------------ 198 +F+E R + VG +K L+ T+ T G IL Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228 Query: 199 --LVIATVITP--GATAKLMSKSFGTYLVSSSLLGATSSFLGSYISYFLDCSPG------ 248 L+ + P G Y+V++ LLG T L SY+ G Sbjct: 229 DYLLSIPISCPLIGVI------QLAHYVVTAKLLGFTPGELRSYLK-------GATGHSQ 275 Query: 249 GIIV--II----------ETSLFLLCLFFF----SKQY--RTS 273 G++ I + + + FF + TS Sbjct: 276 GLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS 318 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.330 0.142 0.419 Gapped Lambda K H 0.267 0.0565 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 2,278,078 Number of extensions: 99014 Number of successful extensions: 331 Number of sequences better than 10.0: 1 Number of HSP's gapped: 330 Number of HSP's successfully gapped: 13 Length of query: 273 Length of database: 5,693,230 Length adjustment: 91 Effective length of query: 182 Effective length of database: 3,487,026 Effective search space: 634638732 Effective search space used: 634638732 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 56 (25.7 bits)