HHsearch alignment for GI: 254780540 and conserved domain: COG1172
>COG1172 AraH Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].
Probab=97.05 E-value=0.016 Score=31.72 Aligned_cols=187 Identities=16% Similarity=0.146 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH--HHHHHCCCC-CHHHHHH-HHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 999999999731233443024478989999999999--863210244-1034577-631753466552578998899999
Q gi|254780540|r 75 AGMICTLSAGYLKEKSYFQEDLVLSIVFSGMFAIGI--ILILKVHSS-LHFSHIL-LGDMLGISKSDIITTAFFAFISIS 150 (277)
Q Consensus 75 ~~ll~a~li~~l~~r~~~~~d~~igiv~~~~~algi--ll~s~~~~~-~~l~~~L-fG~il~v~~~dv~~~~i~~~~~l~ 150 (277)
T Consensus 101 ~g~~~G~iNG~lv~~~~ip~--fI~TLgt~~i~rGl~l~~t~G~~i~~~~~~~~~g~~~~~GiP~~~~i~i~~~~~~~~~ 178 (316)
T COG1172 101 VGALIGLINGLLVARLRIPP--FIATLGTMFILRGLALLLTGGRPISLPDAFAWLGSGRILGIPVPVIIFIVVAALFWLL 178 (316)
T ss_pred HHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEECCCHHHHHHHHHHHHHHHH
T ss_conf 99999998989999817882--9998889999999998870992677978999843585428709999999999999999
Q ss_pred H-HHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHH-
Q ss_conf 9-9986334311346688997618874235669999999999999989899999999----------998778998530-
Q gi|254780540|r 151 F-LILKKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAV----------LVLPGATAFLLS- 218 (277)
Q Consensus 151 ~-~~~~~r~l~~~sfD~~~A~~~Gi~v~~~~~~~~~lial~v~~~v~~vG~llv~al----------li~Paa~A~~~s- 218 (277)
T Consensus 179 l~rT~~Gr~iyAvG~N~~AA~~sGI~v~rv~i~~y~isG~lAaia----Gi~~~~~~~s~~~~~g~~~eL~aIAAvViGG 254 (316)
T COG1172 179 LRRTRFGRSIYAVGGNEEAARLSGIPVRRVKIAAYVLSGLLAALA----GILLAARLGSAQPNAGVGYELDAIAAVVIGG 254 (316)
T ss_pred HHHCCCCCEEEEECCCHHHHHHCCCCCCCEEEHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf 845601478989789899999849881224424689999999999----9999999658485645454888889754177
Q ss_pred -------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf -------888999999999999999999999999578818999999999999999999960
Q gi|254780540|r 219 -------KHHTTMILLSVIISVVCTLVGIYISFFINSAAAPTVVILMAIFFVVVYAYSIII 272 (277)
Q Consensus 219 -------~s~~~~i~~s~~ig~~~~~~G~~lS~~~~~p~g~~Iv~~~~~~~~~~~~~~~l~ 272 (277)
T Consensus 255 tsL~GG~Gsv~Gt~iGalil~~l~ngl-----~l~~v~~~~q~~i~G~iil~av~~~~~~~ 310 (316)
T COG1172 255 TSLAGGRGSVIGTLLGALILGVLQNGL-----NLLGVSSYWQQIIKGLIILLAVALDGRRR 310 (316)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHH-----HHHCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 476688404599999999999999889-----99299889999999999999999999998