HHsearch alignment for GI: 254780540 and conserved domain: PRK03784
>PRK03784 vtamin B12-transporter permease; Provisional.
Probab=99.91 E-value=1.4e-21 Score=134.45 Aligned_cols=242 Identities=12% Similarity=0.144 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999999998788999999-76899644---5899999999999972211------33458899999999997312334
Q gi|254780540|r 21 FIITVIVVIPMSVLSCFIIL-KNQSFAGE---AISHSVLPGIVLSHMAGIP------LEIGAFIAGMICTLSAGYLKEKS 90 (277)
Q Consensus 21 ll~~~l~~~~~~~lG~~vv~-rr~~~~~~---alsH~al~Gial~~l~g~~------~~lga~~~~ll~a~li~~l~~r~ 90 (277)
T Consensus 61 ~l~a~l~Ga~LavsG~llQ~l~rNpLA~P~iLGissGA~l~~~~~~~~~~~~~~~~~~~~~a~~gal~~~~l~~~~~~~~ 140 (330)
T PRK03784 61 TLAVLLVGAALAVSGAVMQALFENPLAEPGLLGVSNGAGVALVAAVLLGQGLLPGWALSLCAIAGALIITLILLRFARRH 140 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99999999999999999999947988898503588999999999999987677799999999999999999999999547
Q ss_pred CCCHH--HHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 43024--478989999999999863210244---1034577631753466552578998899999999863343113466
Q gi|254780540|r 91 YFQED--LVLSIVFSGMFAIGIILILKVHSS---LHFSHILLGDMLGISKSDIITTAFFAFISISFLILKKNDLLLMIFD 165 (277)
Q Consensus 91 ~~~~d--~~igiv~~~~~algill~s~~~~~---~~l~~~LfG~il~v~~~dv~~~~i~~~~~l~~~~~~~r~l~~~sfD 165 (277)
T Consensus 141 ~~~~~~liL~Giais~~~~a~~~~l~~~~~~~~~~~~~~Wl~Gsl~~~~w~~~~~~~~~~~~-~~~~~~~~r~L~~L~LG 219 (330)
T PRK03784 141 RLSTARLLLAGVALGIICSALMTWAVYFSTSLDLRQLMYWMMGGFGGVDWRQSWLMLALLPV-LIWLCCQGRPLNMLALG 219 (330)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHCHHHHCC
T ss_conf 98815899999999999999999999958999999999997265457988899999999999-99999998656042179
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88997618874235669999999999999989899999999998778998530888999999999999999999999999
Q gi|254780540|r 166 PMHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVLVLPGATAFLLSKHHTTMILLSVIISVVCTLVGIYISFF 245 (277)
Q Consensus 166 ~~~A~~~Gi~v~~~~~~~~~lial~v~~~v~~vG~llv~alli~Paa~A~~~s~s~~~~i~~s~~ig~~~~~~G~~lS~~ 245 (277)
T Consensus 220 d~~A~~LGv~v~~~r~~~l~~a~ll~a~~Va~~G~IgFVGL-i~PhiaR~l~g~~~~~llp~sal~Ga~lll~aD~~~R~ 298 (330)
T PRK03784 220 ETSARQLGLPLWFWRNLLVLATGWLVGVSVALAGAIGFIGL-VIPHILRLCGLTDHRVLLPGCALAGASLLLLADIVARL 298 (330)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 48898789989999999999999999999993115873996-29999999807775059999999999999999999856
Q ss_pred ----HCCCCHHHHHHHHHHHHHH
Q ss_conf ----5788189999999999999
Q gi|254780540|r 246 ----INSAAAPTVVILMAIFFVV 264 (277)
Q Consensus 246 ----~~~p~g~~Iv~~~~~~~~~ 264 (277)
T Consensus 299 l~~p~elPvGivtaliG~P~fi~ 321 (330)
T PRK03784 299 ALASAELPIGVVTATLGAPVFIW 321 (330)
T ss_pred HCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 25666520999999998999999