HHsearch alignment for GI: 254780540 and conserved domain: PRK09512
>PRK09512 rbsC ribose ABC transporter permease protein; Reviewed.
Probab=95.87 E-value=0.096 Score=27.53 Aligned_cols=120 Identities=11% Similarity=0.099 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHH----HHCCCCCCCCHHHHHHHHHHHHHHHHHHHH-H-HCCCC---CH-HHHH---HHHHHHHCCHHHH
Q ss_conf 889999999999----731233443024478989999999999863-2-10244---10-3457---7631753466552
Q gi|254780540|r 72 AFIAGMICTLSA----GYLKEKSYFQEDLVLSIVFSGMFAIGIILI-L-KVHSS---LH-FSHI---LLGDMLGISKSDI 138 (277)
Q Consensus 72 a~~~~ll~a~li----~~l~~r~~~~~d~~igiv~~~~~algill~-s-~~~~~---~~-l~~~---LfG~il~v~~~dv 138 (277)
T Consensus 100 ai~~~l~~G~~~G~iNG~lV~~~~ip~--~I~TLgt~~i~~Gl~~~~t~g~~i~~~~~~~~~~~~~~~~g~~~gip~~-~ 176 (321)
T PRK09512 100 AVPAALALGAAIGAVTGVIVAKGKVQA--FIATLVMMLLLRGVTMVYTDGSPINTGFTDNADLFGWFGIGRPLGVPTP-V 176 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCHHH-H
T ss_conf 999999999999999858776336777--9999999999999999982992124677643589999743651565699-9
Q ss_pred HHHHHHHHHHHHHH--HHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 57899889999999--986334311346688997618874235669999999999999
Q gi|254780540|r 139 ITTAFFAFISISFL--ILKKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVIS 194 (277)
Q Consensus 139 ~~~~i~~~~~l~~~--~~~~r~l~~~sfD~~~A~~~Gi~v~~~~~~~~~lial~v~~~ 194 (277)
T Consensus 177 ~i~i~v~ii~~~~l~~T~~Gr~lyAiG~N~~AA~~sGI~v~r~~i~~f~lsg~lagla 234 (321)
T PRK09512 177 WIMAIVFAAAWYMLHHTRLGRYIYALGGNEAATRLSGINVNKIKIIVYSLCGLLAALA 234 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHCCCCCEEEEEHHHHHHHHHHHH
T ss_conf 9999999999999986688748879779899999809885148874799999999999