HHsearch alignment for GI: 254780540 and conserved domain: cd06579
>cd06579 TM_PBP1_transp_AraH_like Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to ge
Probab=97.81 E-value=0.0016 Score=37.10 Aligned_cols=39 Identities=13% Similarity=0.046 Sum_probs=31.3
Q ss_pred HHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 633431134668899761887423566999999999999
Q gi|254780540|r 155 KKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVI 193 (277)
Q Consensus 155 ~~r~l~~~sfD~~~A~~~Gi~v~~~~~~~~~lial~v~~ 193 (277)
T Consensus 141 ~G~~lrAv~~n~~~A~~~Gi~v~r~~~~af~is~~lagl 179 (263)
T cd06579 141 FGRYLYAVGGNPEAARLSGINVRRVKILAYVLSGLLAGL 179 (263)
T ss_pred CCCHHHHHCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 611044313189999983998689654899898999999