HHsearch alignment for GI: 254780540 and conserved domain: cd06580
>cd06580 TM_PBP1_transp_TpRbsC_like Transmembrane subunit (TM) of Treponema pallidum (Tp) RbsC-1, RbsC-2 and related proteins. This is a functionally uncharacterized subgroup of TMs which belong to a larger group of TMs of Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporters, which are mainly involved in the uptake of branched-chain amino acids (AAs) or in the uptake of monosaccharides including ribose, galactose, and arabinose, and which generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction.
Probab=96.42 E-value=0.049 Score=29.08 Aligned_cols=103 Identities=15% Similarity=0.068 Sum_probs=68.5
Q ss_pred HHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHH-CCH
Q ss_conf 863343113466889976188742356699999999999999898999999999-----------98778998530-888
Q gi|254780540|r 154 LKKNDLLLMIFDPMHAHSMQIPIKLLHYNFLIVLSLIIVISLKSIGIILPPAVL-----------VLPGATAFLLS-KHH 221 (277)
Q Consensus 154 ~~~r~l~~~sfD~~~A~~~Gi~v~~~~~~~~~lial~v~~~v~~vG~llv~all-----------i~Paa~A~~~s-~s~ 221 (277)
T Consensus 116 ~~G~~lravG~n~~aA~~~Gi~v~~~~~~a~~isg~laGla----G~~~~~~~~~~~~~~~~~g~g~~aia~~ilg~~~p 191 (234)
T cd06580 116 RFGLRLRAVGENPRAARYAGINVKRVRLLAMLISGALAGLA----GAYLVLGVQGRFTEGMSAGYGFIAIAVALLGRWNP 191 (234)
T ss_pred HHHHEEEEECCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCH
T ss_conf 78745003318899998879888899999999999999999----99999865025776776661499999999979988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 9999999999999999999999995788189999999999
Q gi|254780540|r 222 TTMILLSVIISVVCTLVGIYISFFINSAAAPTVVILMAIF 261 (277)
Q Consensus 222 ~~~i~~s~~ig~~~~~~G~~lS~~~~~p~g~~Iv~~~~~~ 261 (277)
T Consensus 192 ~g~~~~al~fg~l~~-g~~~lq~~~~ip~~~~~~i~~ii~ 230 (234)
T cd06580 192 LGILLAALLFGALEA-GGIALQRSGGVPSELVQVLPGIIV 230 (234)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 999999999999999-999997617999999999999999